Psyllid ID: psy12803

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900--
Protein Sequence
MSWKGTQNRSRIPTLNCQAYTLDKPIISKHNVSNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEccEEEEccccEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEccccEEEEEEEEccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEccccccccccccccccccccccccccccccccEEEEEcccccccEEEEccHHHHHccccccccccccccccccEEEEcccEEEEccccccEEEEEcccccEEEEEcccccccccccEEcccccEEEEEcccccEEEEEEccccEEEEEEccccccEEEEEEEcccccccccEEEEEEEEEEEEccccccccEEEEEEcccccEEEccccccccccccEEEEEcccccEEEEEccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccHHHccccccEEEcccccEEEEEEEEEcccccccccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccccEEEEEEccccEEEcccEEEEEEcccEEEEEEEcHHHHHHEEEEccccccEEEEEccEEEEEcccEEEEEEEEEcccccEEEEEEccccEEcccccEEEEEEcccccEEEEEEEEEEEEccccccEEEEEEEcccccEEEEEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEccccEEEEEccEcccEEEEcccccccEEcccccccccccEEEEEcccccccEEEEEccHHHHHccccccEEEcccccccccEEEEccEEEEEcccccEEEEEEccHHEHHHHHHccccccccccccccccccEEEEccccEEEEEEcccccEEEEEEccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccEEEEccccccccEEEEEEEccccccEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEEEEcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mswkgtqnrsriptlncqaytldkpiiskhnvsnrfrrhvdkdkgdifdnsvpqtphvefvppdlYEEIREREKEQqnsthnnpwvwlnaysripLVAMQgfcnstkeycppglqgpigqkgeigakgemgvkgergekgapgvvgppgpqgipgdegkrgpkgdmgypgpqgipgdegkrgpkgdmgypgrigldgrdglpgepgldgipgrngmdgipgkdglpgkdgipgtngtngekgmtgprgnrgksgingvpgtpaICAYkrescsllpnsetsqllipptivgsehifssspivvregdnvrlrcvatghpkpsiiwktsenkpitlgswkdsavasstlnftrinrinmgaymcladnvppqilirnrrvgvpigrtatleceveafplsVRYWEFIDgtliehdgvkysisdvdkgsYQYIMQLNisnvnisdfdtyrcisknevdiaKGSLILfesnaktpvptekeqeevtvynrapkpegqddlcppqvlcppcsdqnkefnckegyfaydllgrrdfdvkplgnvsskglpnrtldcqvyavgkpvfhkstsmkkessgkpvdvifgawmkdphptsgnsekfwmttdsdpthlneykdkdmfksdakswtynlkepfqgnahvvfnnsfyyhkkfsnsivqfdlgsskiinivnlstvdpniklyktgynvmdfsldengLWVIYGlsnnntavtkldtaTLQIQYTWNITLLHKKVGDMFVVCGVLYVVDsvtdrntnIRFALDLYKNDLLEVSlnftnpftnttmitynsrykdlytwdrgnsltypiryheidsynlnkqektdadmttgvditptqpplipdstysFIRLTFQdlytwdrgnsltypiryheidsynlnkqektdadmttgvditptqpplip
Flexible Loop (DISEMBL)
mswkgtqnrsriptlncqaytldkpiiskhnvsnRFRRHVDKDKgdifdnsvpqtphvefvPPDLYEEIREREKEqqnsthnnpwVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGErgekgapgvvgppgpqgiPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPgtngtngekgmtgprgnrgksgiNGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVatghpkpsiiwktsenkpiTLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESnaktpvptekeqeeVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGnvsskglpnrtlDCQVYAVGKPVfhkstsmkkessgkpVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNftnpftnttmitynSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLNkqektdadmttgvditptqpplip
Low Complexity Region (SEG)
MSWKGTQNRSRIPTLNCQAYTLDKPIISKHNVSNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERgekgapgvvgppgpqgipgdegKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIP
Disordered region (IsUnstruct)
*************TLNCQAYTLDKPIISKHNVSNRFR*********************************************NPWVWLNAYSRIPLVAMQGFCNSTKEYCPPG***************************************************************************************************************************************************TPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE**********************************QVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFH*************VDVIFGAWM************************************AKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLN***********GVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNL*************************
Disordered Region (DISOPRED)
*SWKGTQ************************************************************************************************************************************************************************************************************************************************************GTPAICAYK********************************************************************************NFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF************************************************FNCKEGYFAYDLLGRRDFDV*P***********RTLDCQVYAVGKPVFHKSTSM***SSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPL**
Disordered Region (DISEMBL)
**********RIPTLNCQAYTLDKPIISKHNVSNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYEEIR**********HNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK************TVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHK**********KPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIP
Disordered Region (DISPRO)
*********SRIPTLNCQAYTLDKPII*************************PQTPHVEFVPPDLYEEIREREKEQQNSTHNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVK**********V*GP*GP********************************************************LDG***************************TNGEKGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEID**************************LIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLN**********T*V*ITPTQP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWKGTQNRSRIPTLNCQAYTLDKPIISKHNVSNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPDSTYSFIRLTFQDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	902	2.2.26 [Sep-21-2011]
Q68BL8	750	Olfactomedin-like protein	yes	N/A	0.248	0.298	0.354	9e-34
A6QLD2	759	Olfactomedin-like protein	yes	N/A	0.248	0.295	0.350	2e-33
Q3V1G4	746	Olfactomedin-like protein	yes	N/A	0.248	0.300	0.341	2e-32
A2BD09	607	Olfactomedin-like protein	no	N/A	0.276	0.410	0.300	4e-31
Q68BL7	652	Olfactomedin-like protein	no	N/A	0.279	0.386	0.301	2e-28
Q8BHP7	681	Olfactomedin-like protein	no	N/A	0.248	0.328	0.302	4e-28
A4IIT5	642	Olfactomedin-like protein	no	N/A	0.248	0.348	0.324	1e-27
Q9IAK4	485	Noelin OS=Gallus gallus G	no	N/A	0.257	0.478	0.298	2e-27
O88998	485	Noelin OS=Mus musculus GN	no	N/A	0.257	0.478	0.298	3e-27
Q62609	485	Noelin OS=Rattus norvegic	no	N/A	0.257	0.478	0.298	3e-27

>sp|Q68BL8|OLM2B_HUMAN Olfactomedin-like protein 2B OS=Homo sapiens GN=OLFML2B PE=2 SV=2

 Score =  146 bits (368), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 13/237 (5%)

Query: 581 GAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVF 640
           GAWMKDP       E+ ++T       L E+++ + FK    S +Y L   + G  HVV+
Sbjct: 515 GAWMKDP---LAKDERIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVY 571

Query: 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWV 698
           N +FYY++ F+ +I+++DL    +     L  V  +        G++ +DF++DENGLW+
Sbjct: 572 NGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWL 631

Query: 699 IY------GLSNNNTAVTKLDTATL--QIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTD 750
           IY      G S     ++KL+ A L  Q + TW   L     G+ FV+CGVLY VDS   
Sbjct: 632 IYPALDDEGFSQEVIVLSKLNAADLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQ 691

Query: 751 RNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
           RN NI +A D + N  +   L F N ++ TT I YN + + LY WD G+ +TY + +
Sbjct: 692 RNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIF 748

Homo sapiens (taxid: 9606)

>sp|A6QLD2|OLM2B_BOVIN Olfactomedin-like protein 2B OS=Bos taurus GN=OLFML2B PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 13/237 (5%)

Query: 581 GAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVF 640
           GAWMKDP       E+ ++T       L E+++ + FK    S +Y L   + G  HVV+
Sbjct: 524 GAWMKDP---LAKDERIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVY 580

Query: 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWV 698
           N +FYY++ F+ +I+++DL    +     L  V  +        G++ +DF++DENGLW+
Sbjct: 581 NGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWL 640

Query: 699 IY------GLSNNNTAVTKLDTATL--QIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTD 750
           IY      G S     ++KL+   L  Q + TW   L     G+ FV+CGVLY VDS   
Sbjct: 641 IYPALDDEGFSQEVIVLSKLNAVDLSTQKETTWRTGLRRNLYGNCFVICGVLYAVDSHNQ 700

Query: 751 RNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
           RN NI +A D + N  +   L F N ++ TT I YN + + LY WD G+ +TY + +
Sbjct: 701 RNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIF 757

Bos taurus (taxid: 9913)

>sp|Q3V1G4|OLM2B_MOUSE Olfactomedin-like protein 2B OS=Mus musculus GN=Olfml2b PE=1 SV=2

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 13/237 (5%)

Query: 581 GAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVF 640
           GAWMKDP       ++ ++T       L E+++ + FK    S +Y L   + G  HVV+
Sbjct: 511 GAWMKDP---LAKDDRIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVY 567

Query: 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWV 698
           N +FYY++ F+ +I+++DL    +     L  V  +        G++ +DF++DENGLW+
Sbjct: 568 NGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWL 627

Query: 699 IY------GLSNNNTAVTKLDTATL--QIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTD 750
           IY      G +     ++KL+   L  Q + TW   L     G+ FV+CGVLY VDS   
Sbjct: 628 IYPALDDEGFNQEVIVLSKLNAVDLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQ 687

Query: 751 RNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
           RN NI +A D + N  +   L F N ++ TT I YN + + LY WD G+ +TY + +
Sbjct: 688 RNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIF 744

Mus musculus (taxid: 10090)

>sp|A2BD09|OLM2A_PIG Olfactomedin-like protein 2A OS=Sus scrofa GN=OLFML2A PE=3 SV=2

 Score =  137 bits (345), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 27/276 (9%)

Query: 545 PNRTLDCQ--VYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTD 602
           P R   C+  + AV  PV H S    +           GAWMKDP   +   +K ++T  
Sbjct: 344 PGREASCEGTLRAVDPPVRHHSYGRHE-----------GAWMKDP---AAKDDKIYVTNY 389

Query: 603 SDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS 662
                L E+++ + FK    S  Y L   + G  HVV+  +FYY++ F+ +I+++DL   
Sbjct: 390 YYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFYYNRAFTKNIIKYDLRQR 449

Query: 663 KIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNN-------TAVTKLD 713
            + +   L  V  +        G++ +DF++DE+GLWVIY  +++          +++LD
Sbjct: 450 FVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAADDRDEAQPEVIVLSRLD 509

Query: 714 TATLQI--QYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSL 771
              L +  + TW   L     G+ F+VCG+LY VD+   R  ++ +A D +      + L
Sbjct: 510 PGDLSVHRETTWKTRLRRNSYGNCFLVCGILYAVDTYNQREGHVAYAFDTHTGADARLQL 569

Query: 772 NFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
            F N    TT I YN + + LY WD G+ LTY + +
Sbjct: 570 PFLNEHAYTTQIDYNPKERVLYAWDNGHQLTYTLHF 605

Sus scrofa (taxid: 9823)

>sp|Q68BL7|OLM2A_HUMAN Olfactomedin-like protein 2A OS=Homo sapiens GN=OLFML2A PE=2 SV=1

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 30/282 (10%)

Query: 539 VSSKGLPNRTLDCQ--VYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEK 596
           VSS+G   R   C+  + AV  PV H S    +           GAWMKDP   +   ++
Sbjct: 386 VSSQG---REASCEGTLRAVDPPVRHHSYGRHE-----------GAWMKDP---AARDDR 428

Query: 597 FWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQ 656
            ++T       L E+++ + FK    S  Y L   + G  HVV+  +FYY++ F+ +I++
Sbjct: 429 IYVTNYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFYYNRAFTKNIIK 488

Query: 657 FDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWVIY-GLSNNNTA----- 708
           +DL    + +   L  V  +        G++ +DF++DE+GLWVIY  + + + A     
Sbjct: 489 YDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDDRDEAQPEVI 548

Query: 709 -VTKLDTATLQI--QYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKND 765
            +++LD   L +  + TW   L     G+ F+VCG+LY VD+   +   + +A D +   
Sbjct: 549 VLSRLDPGDLSVHRETTWKTRLRRNSYGNCFLVCGILYAVDTYNQQEGQVAYAFDTHTGT 608

Query: 766 LLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
                L F N    TT I YN + + LY WD G+ LTY + +
Sbjct: 609 DARPQLPFLNEHAYTTQIDYNPKERVLYAWDNGHQLTYTLHF 650

Homo sapiens (taxid: 9606)

>sp|Q8BHP7|OLM2A_MOUSE Olfactomedin-like protein 2A OS=Mus musculus GN=Olfml2a PE=1 SV=1

 Score =  127 bits (319), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 14/238 (5%)

Query: 581 GAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVF 640
           GAWMKDP   +   ++ ++T       L E+++ + FK    S  Y L   + G  HVV+
Sbjct: 445 GAWMKDP---AALDDRIYVTNYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVY 501

Query: 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWV 698
             +FYY++ F+ +I+++DL    + +   L  V  +        G++ +DF++DE+GLWV
Sbjct: 502 QGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWV 561

Query: 699 IYGLSNNN-------TAVTKLDTATLQI--QYTWNITLLHKKVGDMFVVCGVLYVVDSVT 749
           IY   + +         +++LD A L +  + TW   L     G+ F+VCG+LY VD+  
Sbjct: 562 IYPAVDEHDETQHEVIVLSRLDPADLSVHRETTWKTRLRRNSYGNCFLVCGILYTVDTYN 621

Query: 750 DRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
                + +A D +        L F N ++ TT + YN + + LY WD G+ LTY + +
Sbjct: 622 QHEGQVAYAFDTHTGTDAHPQLPFLNEYSYTTQVDYNPKERVLYAWDNGHQLTYTLHF 679

Mus musculus (taxid: 10090)

>sp|A4IIT5|OLM2A_XENTR Olfactomedin-like protein 2A OS=Xenopus tropicalis GN=olfml2a PE=2 SV=1

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 13/237 (5%)

Query: 581 GAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVF 640
           GAWMKDP    G   + ++T      +L E+++ D FK    S  Y +   + G  HVVF
Sbjct: 407 GAWMKDPIAKDG---RIYVTNYYYGNNLVEFRNLDNFKQGRWSNLYKVPYNWIGTGHVVF 463

Query: 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWV 698
             +FYY++ F+ +I+++DL    +     L  V  +        G++ +DF++DE+GLWV
Sbjct: 464 QGAFYYNRAFTKNIIKYDLKQRFVAAWTLLHDVVYEDTTPWKWRGHSDIDFAVDESGLWV 523

Query: 699 IYGLSNNN------TAVTKLDTATLQI--QYTWNITLLHKKVGDMFVVCGVLYVVDSVTD 750
           IY   + +        ++KLD   L I  + TW   L     G+ F++CG+LY VD    
Sbjct: 524 IYPSVDYDYSQQEVIVISKLDPNDLSIKKETTWKTGLKRNSYGNCFIICGILYAVDVYNQ 583

Query: 751 RNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRY 807
           +   I +A D + +   +  L F N +  TT I YN + K LY WD G+ LTY + +
Sbjct: 584 KEGMISYAYDTHTDTEADPKLPFINEYAFTTQIDYNPKEKVLYAWDNGHQLTYKVNF 640

Xenopus tropicalis (taxid: 8364)

>sp|Q9IAK4|NOE1_CHICK Noelin OS=Gallus gallus GN=OLFM1 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 580 FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVV 639
           FG+WM DP    G ++ ++M +  +   + EYK    F +     ++ L  P+ G   VV
Sbjct: 246 FGSWMTDPLAPEGENKVWYMDSYHNNRFVREYKSMADFMNTDNFTSHRLPHPWSGTGQVV 305

Query: 640 FNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKT--GYNVMDFSLDENGLW 697
           +N S Y++K  S+ I++FDL +  I+   +L     N   +    G++ +D  +DENGLW
Sbjct: 306 YNGSIYFNKYQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLW 365

Query: 698 VIYGLSNN--NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNI 755
            +Y  + N  N  ++KLD  TLQ   TWN +   +  G+ F++CG LYV +  +   T +
Sbjct: 366 AVYATNQNAGNIVISKLDPNTLQSLQTWNTSYPKRSAGEAFIICGTLYVTNGYSG-GTKV 424

Query: 756 RFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIR-YHEIDS 812
            +A     +    + + F N +++ +M+ YN + + LY W+ G+ + Y +  +H I S
Sbjct: 425 HYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQILYNVTLFHVIRS 482

Seems to play an important role in regulating the production of neural crest cells by the neural tube.

Gallus gallus (taxid: 9031)

>sp|O88998|NOE1_MOUSE Noelin OS=Mus musculus GN=Olfm1 PE=1 SV=1

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 580 FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVV 639
           FG+WM DP    G++  ++M    +   + EYK    F +     ++ L  P+ G   VV
Sbjct: 246 FGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSGTGQVV 305

Query: 640 FNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKT--GYNVMDFSLDENGLW 697
           +N S Y++K  S+ I++FDL +  I+   +L     N   +    G++ +D  +DENGLW
Sbjct: 306 YNGSIYFNKFQSHIIIRFDLKTEAILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLW 365

Query: 698 VIYGLSNN--NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNI 755
            +Y  + N  N  ++KLD  +LQI  TWN +   +  G+ F++CG LYV +  +   T +
Sbjct: 366 AVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSG-GTKV 424

Query: 756 RFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIR-YHEIDS 812
            +A     +    + + F N +++ +M+ YN + + LY W+ G+   Y +  +H I S
Sbjct: 425 HYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRS 482

Seems to play an important role in regulating the production of neural crest cells by the neural tube.

Mus musculus (taxid: 10090)

>sp|Q62609|NOE1_RAT Noelin OS=Rattus norvegicus GN=Olfm1 PE=1 SV=1

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 580 FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVV 639
           FG+WM DP    G++  ++M    +   + EYK    F +     ++ L  P+ G   VV
Sbjct: 246 FGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSGTGQVV 305

Query: 640 FNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKT--GYNVMDFSLDENGLW 697
           +N S Y++K  S+ I++FDL +  I+   +L     N   +    G++ +D  +DENGLW
Sbjct: 306 YNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLW 365

Query: 698 VIYGLSNN--NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNI 755
            +Y  + N  N  ++KLD  +LQI  TWN +   +  G+ F++CG LYV +  +   T +
Sbjct: 366 AVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSG-GTKV 424

Query: 756 RFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIR-YHEIDS 812
            +A     +    + + F N +++ +M+ YN + + LY W+ G+   Y +  +H I S
Sbjct: 425 HYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRS 482

Seems to play an important role in regulating the production of neural crest cells by the neural tube.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	902
170030914	794	colmedin [Culex quinquefasciatus] gi|167	0.794	0.903	0.444	0.0
328713370	838	PREDICTED: hypothetical protein LOC10015	0.833	0.897	0.423	1e-177
157109031	793	colmedin [Aedes aegypti] gi|108879145|gb	0.791	0.900	0.444	1e-177
158294873	828	AGAP005849-PA [Anopheles gambiae str. PE	0.838	0.913	0.430	1e-165
91085657	879	PREDICTED: similar to colmedin [Triboliu	0.830	0.852	0.418	1e-162
321464115	949	hypothetical protein DAPPUDRAFT_323635 [	0.762	0.724	0.408	1e-157
194768126	960	GF19364 [Drosophila ananassae] gi|190623	0.828	0.778	0.391	1e-150
198468827	956	GA19916 [Drosophila pseudoobscura pseudo	0.798	0.753	0.400	1e-148
195166846	962	GL14936 [Drosophila persimilis] gi|19410	0.798	0.748	0.400	1e-148
195457114	977	GK15168 [Drosophila willistoni] gi|19417	0.797	0.735	0.389	1e-147

>gi|170030914|ref|XP_001843332.1| colmedin [Culex quinquefasciatus] gi|167868812|gb|EDS32195.1| colmedin [Culex quinquefasciatus]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/831 (44%), Positives = 489/831 (58%), Gaps = 114/831 (13%)

Query: 56  PHVEFVPPDLYEEIREREKEQQNSTH-------NNPWVWLNAYSRIPLVAMQGFCNSTKE 108
           P+VEF  P L  E+ +++ E    T         + WVWL +YSRIP  A+ GFC +TKE
Sbjct: 11  PNVEFFNPKLRSELEKKDAEIIKKTGMKGAAPGGDTWVWLTSYSRIPFDAITGFCRATKE 70

Query: 109 YCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGK---RGPKGD 165
           YCPP               G  G+ G  G KG  G VG PGP G+ G EGK   RGPKG+
Sbjct: 71  YCPP---------------GSTGLPGIPGPKGNRGDVGLPGPAGVDGREGKPGPRGPKGE 115

Query: 166 MGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 225
           +GY                     PG  GLDGRDG+PGEPGLDGIPGR G DGIPG+D  
Sbjct: 116 IGY---------------------PGNPGLDGRDGVPGEPGLDGIPGRAGADGIPGRD-- 152

Query: 226 PGKDGIPGTNGTN---------------------GEKGMTGPRGNRGKSGINGVPGTPAI 264
            GKDG PG NG N                     G +G+ GPRG  G+SGING PGTP I
Sbjct: 153 -GKDGTPGINGQNGVDGKHGTPGPVGPSGPTGEPGPRGLHGPRGKPGRSGINGTPGTPGI 211

Query: 265 CAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSII 324
            A+K +      N    +LL+PPTI G+    +  PIVV EG ++RLRC ATG P+P + 
Sbjct: 212 NAWKIKVNDTFSN----ELLVPPTIAGAGTPEALRPIVVHEGTHLRLRCAATGTPRPHVE 267

Query: 325 WKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------------VP 369
           W+  + K I+ G+W+ S++A  TLN T+INR++MGAY CLADN                P
Sbjct: 268 WRREDGKTISNGAWQASSMAGHTLNITKINRVHMGAYQCLADNGIPPPANQTFNLEVHFP 327

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           P I +RN+ V    G +AT ECEVEAFP +++YWE + G  +   G KY +   ++G Y+
Sbjct: 328 PLIRVRNQMVYATNGSSATFECEVEAFPEALKYWERVPGGRLLEPGDKYQMETHNEG-YK 386

Query: 430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAP 489
            IM+LNI+N+  +DF  Y CI+KNE+ I +    L E +           E      + P
Sbjct: 387 SIMRLNITNIRYADFGEYHCIAKNELGITQAEFHLMEHSPYIIHRPGSLGEAQEYGKQPP 446

Query: 490 KPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFA-YDLLGRRDFDVKPLGNVSSKGLPNRT 548
           K E  +++C P   CP C D  ++F CK+   + YDL+G  + ++K  GNVS  GLPNRT
Sbjct: 447 KVESYEEICGPPTSCPECPDP-RDFKCKDNIVSLYDLVG--NLEIKQTGNVSYPGLPNRT 503

Query: 549 LDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSE-KFWMTTDSDPTH 607
            DC +YAVGKPV+HK T           D  +GAW+KD  P +   E K W T ++D + 
Sbjct: 504 TDCVLYAVGKPVYHKYT-----------DQNYGAWLKDSAPRNDAIEKKIWATRENDTSR 552

Query: 608 LNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINI 667
           L E+ +K  ++++  + TY L +PF+GNAHVVFN SFYY+++ S  I+++DL + +   I
Sbjct: 553 LFEFANKTTYRNNVATKTYRLDKPFRGNAHVVFNGSFYYNERNSPRIIKYDLTTERQTAI 612

Query: 668 VNLSTVDPNIK--LYKTGYNVMDFSLDENGLWVIYGL-SNNNTAVTKLDTATLQIQYTWN 724
             +  V  N    LY T +N MDF++D+NGLWVIYG   +NNT + KL+   L +QY+WN
Sbjct: 613 KEIEGVTTNGSNYLYTTEFNYMDFNVDDNGLWVIYGTPESNNTIIAKLNEYNLDVQYSWN 672

Query: 725 ITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMIT 784
           I++ H KVG+MF+VCGVLY +DSVT+RNT IR ALDLY   LL+VSL FTNPF  TT + 
Sbjct: 673 ISVNHHKVGEMFIVCGVLYAIDSVTERNTKIRLALDLYHGKLLDVSLTFTNPFRKTTTVG 732

Query: 785 YNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTD----ADMTTGVDI 831
           YN + K+LYTWDRGN LTYPIRYH +  +N+   +KT+      M TG DI
Sbjct: 733 YNPKNKELYTWDRGNQLTYPIRYH-VSDFNVTVTDKTEDSLNPQMQTGYDI 782

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713370|ref|XP_001950725.2| PREDICTED: hypothetical protein LOC100159502 [Acyrthosiphon pisum]

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 355/838 (42%), Positives = 502/838 (59%), Gaps = 86/838 (10%)

Query: 33  SNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHN---NPWVWLN 89
           S+R RR V+  +  +   +      VEF+ P+ +  I E+E   +    N     W WLN
Sbjct: 42  SHRPRRDVNIAENSVSSKTDDGGEKVEFINPN-FRPIIEKETNAKGEPPNGTKEEWYWLN 100

Query: 90  AYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPG 149
           AYSRIP+ A+QGFC+ST++YCPPG +GPIG +GE+G  G  G KGE G+ G  G+ G  G
Sbjct: 101 AYSRIPVAALQGFCSSTRDYCPPGKEGPIGPRGELGPGGLPGSKGEPGQVGPMGIEGRKG 160

Query: 150 PQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDG 209
           P G+PG  G +G +G  G+PG  G                     LDGRDG+PGEPGLDG
Sbjct: 161 PTGLPGPVGPKGERGMTGFPGAPG---------------------LDGRDGIPGEPGLDG 199

Query: 210 IPGRNGMDGIPGKDGLPGKDGIPGTNGTNGE---------------KGMTGPRGNRGKSG 254
           +PG+ G+DG PG +GLPGKD     NGT+G+               KG+TGP+G  GK G
Sbjct: 200 MPGKYGLDGFPGTNGLPGKDAT-CFNGTDGKPGEMGPFGPPGPIGPKGLTGPKGRPGKPG 258

Query: 255 INGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCV 314
           ++G PG P + AY   + + +P   TS  L  P+I+G   + +   I V+EGDN+RLRCV
Sbjct: 259 VDGTPGRPGLSAYNY-TVNGIP---TSDFLTAPSIIGQSELKN---ITVKEGDNLRLRCV 311

Query: 315 ATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------- 367
           ATG PKP+I+W+  +   + +GSW++ +V    +N T++NR++MG Y C+ADN       
Sbjct: 312 ATGSPKPTIVWQKLDTTTVPIGSWREESVTGHAINITKVNRLHMGRYKCIADNGIAPSAI 371

Query: 368 --------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYS 419
                    PP I ++N+ V   + R+ + ECEVEAFP ++ YWE     L   D  KYS
Sbjct: 372 QYYSIETHFPPLISVQNQHVAAAVNRSTSFECEVEAFPYAIHYWEREGDILDNSD--KYS 429

Query: 420 ISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF--ESNAKTPVPTEK 477
           I+ +D  +Y++IMQLNIS+V  +D  TY C+SKN+  I  G++ L+  +    TP P   
Sbjct: 430 ITRIDVSNYKFIMQLNISSVVDTDNGTYYCVSKNDEAIVAGNITLYIVDPTLVTPPPYVD 489

Query: 478 EQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLG 537
              ++      P+  G+ D+C P V+CP C    +   CKE +   DLLG +   ++ L 
Sbjct: 490 PNNKIKFGTGPPELVGEYDICQPPVICPTCPKSKETKECKEEFTIDDLLGHQPLAIQQLH 549

Query: 538 NVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKF 597
            V++KG  NR+LDCQVYAVGKPVF++ ++             FG+WMKDP     N E  
Sbjct: 550 KVTNKGHANRSLDCQVYAVGKPVFNRVSNAS-----------FGSWMKDPMSRESN-ETI 597

Query: 598 WMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQF 657
           WMTT+ +   L ++ +K MFK +  + TY L  PF GN+H ++ +SFY+H+K    I +F
Sbjct: 598 WMTTN-EINSLFQFSNKSMFKDNKPTKTYTLSYPFHGNSHAMYKDSFYFHEKDKPIIRRF 656

Query: 658 DLGSSKIINIVN---LSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSN-NNTAVTKLD 713
           D+   K  N +    L+T +   +LY T  N +D +++ENGLWVIYGL + NNTAV  +D
Sbjct: 657 DILQEKCTNFMTVPYLNTTNLKSRLYTTKMNYVDLAVEENGLWVIYGLEDSNNTAVLHVD 716

Query: 714 TATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLL-EVSLN 772
             TL+I+Y WNI++ H + GDMF+VCGVLY V SVT+R+T IRFALDLYKN  L +V L 
Sbjct: 717 PMTLEIEYAWNISVKHDRAGDMFIVCGVLYAVHSVTERSTTIRFALDLYKNVRLNDVDLP 776

Query: 773 FTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDADMTTGVD 830
           FTNPF +TT+I YN   K+L+TWD+GN LTYPIRY+ +   N+  +E  D  + +G++
Sbjct: 777 FTNPFAHTTLIQYNPHNKELFTWDQGNLLTYPIRYNSM-GLNITNKELDDEMIPSGIE 833

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109031|ref|XP_001650493.1| colmedin [Aedes aegypti] gi|108879145|gb|EAT43370.1| AAEL005189-PA, partial [Aedes aegypti]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 372/836 (44%), Positives = 489/836 (58%), Gaps = 122/836 (14%)

Query: 56  PHVEFVPPDLYEEIREREKEQQNSTHN-------NPWVWLNAYSRIPLVAMQGFCNSTKE 108
           P+VEF  P L  E+ +++ E    T         + WVWL +YSRIP  A+ GFC +TKE
Sbjct: 8   PNVEFFNPKLRTELEKKDAEIIRKTGQKGAAPGGDTWVWLTSYSRIPYDAITGFCRATKE 67

Query: 109 YCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGK---RGPKGD 165
           YCPPG  G  G  G  G +G++G+               PGP GI G EGK   RGPKG+
Sbjct: 68  YCPPGPPGLPGIPGPKGNRGDVGI---------------PGPAGIDGREGKPGPRGPKGE 112

Query: 166 MGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 225
           +GY                     PG  GLDGRDG+PGEPGLDG+PGR G DGIPG+D  
Sbjct: 113 IGY---------------------PGNPGLDGRDGVPGEPGLDGVPGRAGADGIPGRD-- 149

Query: 226 PGKDGIPGTNGTNGEKG---------------------MTGPRGNRGKSGINGVPGTPAI 264
            GKDG PG NG NG  G                     + GPRG  G+ GING PGTP I
Sbjct: 150 -GKDGTPGINGQNGIDGKNGTPGPMGPVGPPGEPGPRGLHGPRGKPGRPGINGTPGTPGI 208

Query: 265 CAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSII 324
            A+K +      N    +LL+PPTI GS    +  PIVV+EG ++RLRC ATG PKP + 
Sbjct: 209 NAWKIKVNDTFSN----ELLVPPTIAGSGTPEALRPIVVQEGTHLRLRCAATGTPKPHVE 264

Query: 325 WKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------------VP 369
           W+  + K I+ G+W+ S++A  TLN T+INR++MGAY CLADN                P
Sbjct: 265 WRREDGKTISNGAWQASSMAGHTLNITKINRVHMGAYQCLADNGIPPPANQTFNIEVQFP 324

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           P I +RN+ V   +G TATLECEVEAFP +++YWE   G  +   G K+ +   + G Y+
Sbjct: 325 PLIRVRNQMVYTALGSTATLECEVEAFPEALKYWEREPGGRLLEPGDKFQMETHNDG-YK 383

Query: 430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQE----EVTVY 485
            IM+LNI+NV  +D   Y CI+KNE+ I +    L E+   TP  T  ++     +   Y
Sbjct: 384 SIMRLNITNVQPADIGAYHCIAKNELAITQAEFHLLEN---TPYNTMMQRPGGMGDTQEY 440

Query: 486 NR-APKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFA-YDLLGRRDFDVKPLGNVSSKG 543
            R  PK E  +D+C P   CP C D  ++  CK+   + YDL+G  + ++K  GNVS  G
Sbjct: 441 GRPPPKVESYEDICGPPTTCPECPDP-RDIKCKDAIVSLYDLVG--NLEIKQTGNVSYPG 497

Query: 544 LPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSE-KFWMTTD 602
           LPNRT DC +YAVGKPV+HK T           D  +GAW+KD  P +   E K W T D
Sbjct: 498 LPNRTTDCVLYAVGKPVYHKYT-----------DQNYGAWLKDAAPRNDAVEKKIWATRD 546

Query: 603 SDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS 662
           +D   L E+ +K  ++++  + TY L +PF+GNAHVVFN SFYY+++ S  I+++DL   
Sbjct: 547 NDTMRLYEFANKTTYRNNVSTKTYRLDKPFRGNAHVVFNGSFYYNERNSPRIIKYDLNLE 606

Query: 663 KIINIVNLSTVDPNIK--LYKTGYNVMDFSLDENGLWVIYGL-SNNNTAVTKLDTATLQI 719
           +   +  +  V  N    LY T YN MDF++D+NGLWVIY    +NNT V KL+   L I
Sbjct: 607 RQTAVKEIEGVATNGSNFLYSTEYNYMDFNVDDNGLWVIYSTPDSNNTIVAKLNEFNLDI 666

Query: 720 QYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTN 779
            ++WNI++ H KVG+MF+VCGVLY +DSVT+RNT IR ALDLY + LL+VSL FTNPF  
Sbjct: 667 DFSWNISVNHHKVGEMFIVCGVLYAIDSVTERNTKIRLALDLYHSKLLDVSLTFTNPFRK 726

Query: 780 TTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTD----ADMTTGVDI 831
           TT + YN + K+LYTWDRGN LTYPIRYH ++ YN    +K +      M TG +I
Sbjct: 727 TTTVGYNPKNKELYTWDRGNQLTYPIRYH-VNDYNTTVADKAEDALNPQMQTGYEI 781

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294873|ref|XP_315876.4| AGAP005849-PA [Anopheles gambiae str. PEST] gi|157015767|gb|EAA11951.4| AGAP005849-PA [Anopheles gambiae str. PEST]

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 360/836 (43%), Positives = 489/836 (58%), Gaps = 80/836 (9%)

Query: 36  FRRHVDKDKGDIF---DNSVP--QTPHVEFVPPDLYEEIREREKEQQNSTH-------NN 83
           FR    + K D+    DN VP  + P+VEF  P L  E+ +++ +    T         +
Sbjct: 21  FREPSGRPKRDLSLFDDNLVPDQEGPNVEFFNPKLRSELEKKDADIMKKTGLKGAAPGGD 80

Query: 84  PWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAK---GEMGVKGERGEKG 140
            WVWL +YSRIP  A+ GFC +TKEYCPPG  G  G  G  G +   G  G  G  G +G
Sbjct: 81  SWVWLTSYSRIPFDAITGFCRATKEYCPPGPPGLPGIPGPKGNRGDPGLPGPPGVDGREG 140

Query: 141 APGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDG 200
            PG  GP G  G PG+ G  G  G  G PG  G+PG               R G DG   
Sbjct: 141 KPGPRGPKGEIGYPGNPGLDGRDGVPGEPGLDGVPG---------------RAGADG--- 182

Query: 201 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
           +PG+ G DGIPG +G +GI GKDGL G  G  G  G  G +G+ GP+G +G+ G NG PG
Sbjct: 183 IPGKDGKDGIPGIDGRNGIDGKDGLAGPIGPAGPPGLPGPRGIHGPKGKQGRPGTNGTPG 242

Query: 261 TPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPK 320
           TP I A+K +      N    +LL+PP+I G+  + +  PI+V EG ++RLRC ATG P+
Sbjct: 243 TPGINAWKVKVNDTFSN----ELLVPPSIAGAGTVEALRPIIVHEGTHLRLRCAATGTPR 298

Query: 321 PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------------- 367
           P + W+ ++ K I+ G+W+ +++A  TLN T+INR++MGAY CLADN             
Sbjct: 299 PHVEWRRADGKTISNGAWEATSMAGHTLNITKINRVHMGAYHCLADNGISPPANQTFNIE 358

Query: 368 --VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK 425
              PP I +RN+      G T T  CE+EAFP +++YWE   G  +   G K+ +     
Sbjct: 359 VHFPPLIRVRNQMAYAVNGSTVTFVCEIEAFPEALKYWERFPGGRLLEPGDKFQMETHYD 418

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVY 485
           G Y+ +M+LNI+N+  SDF  Y C++KNE+ + +    L E +     P      ++ VY
Sbjct: 419 G-YKSVMRLNITNIRPSDFGEYHCVAKNELGMTEAEFHLMEHSPFIIRP--PGSTDINVY 475

Query: 486 -NRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFA-YDLLGRRDFDVKPLGNVSSKG 543
             + P+ E  +D+C P   CP C D  ++F CK+   + YDL+G  + ++KP+GNVS  G
Sbjct: 476 GTKPPEKESYEDICGPPTTCPECPDP-RDFKCKDTIVSLYDLVG--NLEIKPIGNVSFTG 532

Query: 544 LPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSE-KFWMTTD 602
           LPNRT DC +YAVGKPV+HK T             ++GAW+KDP   +   E K W T +
Sbjct: 533 LPNRTTDCVLYAVGKPVYHKYTEQ-----------LYGAWLKDPAARNDAMEKKVWATRE 581

Query: 603 SDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS 662
           +D   L E+ +K  ++++  + TY L+ PF+GNAHVV+N SFYY+++ S  I+++DL   
Sbjct: 582 NDTHRLFEFANKTTYRNNVATKTYRLERPFRGNAHVVYNGSFYYNERNSPRIIKYDLNVE 641

Query: 663 KIINIVNLSTVDPNIK--LYKTGYNVMDFSLDENGLWVIYGL-SNNNTAVTKLDTATLQI 719
           +   +  L  V  N    LY T  N MDF++D+NGLWVIYG   +NNT V KL+   L +
Sbjct: 642 RQTAMNELEGVTTNGSNYLYTTEINYMDFNVDDNGLWVIYGTPDSNNTMVVKLNENNLTV 701

Query: 720 QYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTN 779
           QY WNI++ H KVG+MF+VCGVLY +DSVT+RNT IR ALDLY + LL+VSL FTNPF  
Sbjct: 702 QYGWNISVNHHKVGEMFIVCGVLYAIDSVTERNTKIRLALDLYHSKLLDVSLAFTNPFRK 761

Query: 780 TTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTD----ADMTTGVDI 831
           TT + YN + K+LYTWDRGN LTYPIRYHEI  YN    EK D      M TG DI
Sbjct: 762 TTTVGYNFKNKELYTWDRGNQLTYPIRYHEI-GYNTTATEKADDGLNPQMQTGYDI 816

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085657|ref|XP_971289.1| PREDICTED: similar to colmedin [Tribolium castaneum]

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 356/850 (41%), Positives = 485/850 (57%), Gaps = 101/850 (11%)

Query: 26  IISKHNVSNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHN--- 82
           I+ +H    R RR  D  +     NS    PHVEF  P++   + ++++  +  T N   
Sbjct: 85  ILQEHQKGTRRRRDADDYQ---MLNSPSDEPHVEFFSPEMRSTLEKKDELIRQQTGNKGA 141

Query: 83  ----NPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGE 138
               + W+WL +YSRIP  A++G+C    ++C      P G+ G  G  G  G KG+RG+
Sbjct: 142 APGGDSWIWLTSYSRIPEKALEGYCKKVHQFC------PPGRPGPTGPPGSQGPKGDRGD 195

Query: 139 KGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGR 198
           KG PGV G  G +G+PG  G++G +G  G  G  GIPG+                   G 
Sbjct: 196 KGFPGVPGQMGHRGLPGLPGEKGSQGRPGLDGRDGIPGEP------------------GL 237

Query: 199 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNGTNGEKGMTGPRGNRGK 252
           DG+PG  G DGIPG NG  G+PG+DG  G D      G  G  G  G KG+TGP+G  G+
Sbjct: 238 DGMPGRNGYDGIPGVNGRPGLPGRDGRNGTDGLPGLPGPQGPPGPPGPKGLTGPKGKPGR 297

Query: 253 SGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLR 312
            G +G PG P    Y+      +     S+LLIPP+I G++      PIVV EG+NVRL 
Sbjct: 298 HGRDGDPGKPGGTFYQ------INGKNVSELLIPPSIAGAQAT-PMGPIVVHEGENVRLH 350

Query: 313 CVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----- 367
           C A G P P + W     +P++ G+W D+ V+  TLN TR+NR++MG Y C+ADN     
Sbjct: 351 CSAIGTPNPHVTWMKLGKRPVSRGAWHDTGVSGHTLNITRVNRVHMGQYKCIADNGIPPQ 410

Query: 368 ----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVK 417
                      PP I I N+ V VP G +A LECE EAFP S+RYWE  DG L+E +G K
Sbjct: 411 ASQTFNLEVYFPPLIRIYNQVVEVPTGSSAVLECETEAFPESIRYWERSDGRLLE-NGNK 469

Query: 418 YSISD-VDKGSYQYIMQLNISNVNISDFD-TYRCISKNEVDIAKGSLILFESNAKTPVPT 475
           Y I + +D+  Y+  MQLNI+ V+ +D    Y C+SKNE+   +G L + E     P   
Sbjct: 470 YQIDNSLDRDLYKARMQLNITRVHSNDMTYKYYCVSKNELKTIRGELQIQEQQPGRPRQQ 529

Query: 476 EKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKP 535
             +++     N  P    ++DLC P V CP C     E     G    DL+ R  ++++ 
Sbjct: 530 LNDKKTSIFGNLPPIQVSEEDLCGPPVQCPEC-----EACSASGVSLIDLISR--WNIRK 582

Query: 536 LGNVS-SKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHP-TSGN 593
            GN+   K   NRT +C +YAVGKPV+H+ +               G WM+D +P    +
Sbjct: 583 FGNIMYDKDYANRTTNCVLYAVGKPVYHRYSDHNN-----------GCWMRDSNPLVEKD 631

Query: 594 SEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNS 653
           +EKFW+T + DP+HL ++ +K MF+ +A S TY L  PFQGNAHV++N SFYY+ K SN 
Sbjct: 632 AEKFWVTQEDDPSHLFQFDNKTMFRRNAPSRTYVLSYPFQGNAHVIYNGSFYYNAKASNK 691

Query: 654 IVQFDLGSSKIINIVNLSTVDP----NIKLYKTGYNVMDFSLDENGLWVIYGL-SNNNTA 708
           I++F+L +S   +  NLS   P    +  LY   YN MDFS+D+NGLWVI+ +  +NNTA
Sbjct: 692 IIKFNLQTS---HSDNLSLPFPYPLNSSNLYTAQYNYMDFSVDDNGLWVIFPVPDSNNTA 748

Query: 709 VTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLE 768
           V K+D   ++I Y WN+++ H KVG+MF+VCGVLY VDSVTDRNT IRFALDLY   LL+
Sbjct: 749 VLKMDVNLMKINYIWNVSINHNKVGEMFIVCGVLYAVDSVTDRNTKIRFALDLYNEKLLD 808

Query: 769 VSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQ-------EKT 821
           V+L F+NPF  TTMI YN R K+LYTWD+GN LTYP+RYHE   YN+  +       E  
Sbjct: 809 VNLAFSNPFRKTTMIGYNHRNKELYTWDKGNQLTYPVRYHE-SGYNMTDRDDKIFASEFA 867

Query: 822 DADMTTGVDI 831
             DM TG ++
Sbjct: 868 QRDMPTGYNV 877

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464115|gb|EFX75125.1| hypothetical protein DAPPUDRAFT_323635 [Daphnia pulex]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/822 (40%), Positives = 464/822 (56%), Gaps = 134/822 (16%)

Query: 56  PHVEFVPPDLYEEIREREKEQQN-STHNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGL 114
           P+VEFV P   +E   R     + +   NPWVWLNAYSRIP+ A+Q FC++TK+YCPPGL
Sbjct: 161 PNVEFVNPKFRDEYLSRSDSGSSPNNQENPWVWLNAYSRIPVNAIQDFCSATKDYCPPGL 220

Query: 115 QGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGI 174
           +GPIG +G +G KG  G +GERG++G  G+ GP GP    G +G +GPKGDM   G  G+
Sbjct: 221 EGPIGPQGIVGEKGVRGERGERGQQGEAGLRGPVGPI---GPQGPKGPKGDM---GKTGL 274

Query: 175 PGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGK--- 228
           P                  GL+GRDG+PGEPGLDG+PGR+   G DGI G DGLPG+   
Sbjct: 275 P------------------GLNGRDGVPGEPGLDGVPGRSGTPGFDGISGMDGLPGQAGH 316

Query: 229 ---DGIPGTNGTNGE------KGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPNSE 279
              DG PGT G  G+      +G+TGPRG  G+SGI GVPG P +  +   S        
Sbjct: 317 NGIDGNPGTPGEKGDSGPIGPQGLTGPRGKPGRSGIPGVPGIPGVNTWVVNST-----DP 371

Query: 280 TSQLLIPPTIVGSEHI------FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPI 333
              +L+PP+I+G E I       ++  +V++EG N+RLRC   G+P+P + W  ++    
Sbjct: 372 RRIVLVPPSILGVEIIDGQLQGNTTRTVVIQEGKNLRLRCGTAGNPRPEVSWMRADGSLT 431

Query: 334 TLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRR 378
            +GSW+ S V   T N T+++R +MG Y+C+ADN                PP I   +  
Sbjct: 432 PMGSWQTSDVLGPTFNITQVHRDHMGVYVCVADNGIPPPSYRTINVEVHFPPLIRTESSS 491

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN--I 436
           +GV  G +  LEC VEAFP S+ YWE  DG  I+     +     D G Y+  M LN  I
Sbjct: 492 IGVANGSSVVLECVVEAFPESLCYWERADGRSIDS---MHKAFLRDHGKYKVHMTLNLTI 548

Query: 437 SNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDD 496
           +N N+ D+  Y C+SKNEV I +G                    E+ VY   P+      
Sbjct: 549 TNPNV-DYGRYHCVSKNEVGITRG--------------------EIDVYAIDPRFTQAGG 587

Query: 497 LCPPQVLCPPCSD------------------QNKEFNCKE-GYFAYDLLGRRDFDVKPLG 537
           +  P++   P SD                        C+E G   +D+LGR   D++PLG
Sbjct: 588 VNDPKLWGTPPSDLVDLEDMCPPPPDCPKCSSVPSEKCRESGLGMFDVLGR--LDIRPLG 645

Query: 538 NVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHP-TSGNSEK 596
           N +  G  NRT DC + A+GKPV+H+ T+              G WM+D  P T+ + +K
Sbjct: 646 NETYPGYVNRTQDCVLVAIGKPVYHRFTNTSH-----------GNWMRDSLPRTTFDGDK 694

Query: 597 FWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQ 656
           +W T  ++   L EY +K  FK D     Y L    +G  HVV+N S YYH++  + +++
Sbjct: 695 YWATKYNETYVLYEYANKTTFKKDISIRNYTLPFALKGYLHVVYNGSLYYHQQEESRVIR 754

Query: 657 FDLGSSK--IINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSN-----NNTAV 709
           ++L S +  ++ + N +TV  N+ LY    + +DFS+DE GLWVIYG SN     NNTAV
Sbjct: 755 YELASERNTMVYLPN-ATVTGNVHLYAHSQSYLDFSVDETGLWVIYGASNGEQPTNNTAV 813

Query: 710 TKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEV 769
            KL++ +L+I+Y WNI+L +++ G+MF+ CGVLY VDSVT+R T IRFALDLY+N LLEV
Sbjct: 814 AKLNSYSLEIEYIWNISLNNQRAGEMFIACGVLYAVDSVTERTTKIRFALDLYRNKLLEV 873

Query: 770 -SLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEI 810
             L FTNPF  T+M+ YN R K+LYTWD GN LTYP+++ +I
Sbjct: 874 DGLTFTNPFRKTSMVGYNHRNKELYTWDNGNQLTYPVKFTDI 915

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194768126|ref|XP_001966164.1| GF19364 [Drosophila ananassae] gi|190623049|gb|EDV38573.1| GF19364 [Drosophila ananassae]

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 331/846 (39%), Positives = 470/846 (55%), Gaps = 99/846 (11%)

Query: 9   RSRIPTLNCQAYTLDKPIISKHNVSNRFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYE- 67
           RS  P  N + +T +    +      R RR V   +     +S+   P +EF  P+  + 
Sbjct: 161 RSYDPLKNERKFTDNLISHTPRPTGKRMRRDVTSSEPT---SSMHADPVIEFFNPNHRKV 217

Query: 68  ------EIREREKEQQNSTHNNPWVWLNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQK 121
                 EIR+R  ++  +   + W++LN Y R+P   + GFC  T++YCPP  QGP+G+ 
Sbjct: 218 LEEQDTEIRKRTGQKGAAPGGDEWIYLNTYCRVPEKIITGFCKGTQDYCPPAPQGPVGEA 277

Query: 122 GEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKR 181
           G  G  G  G+ G  G KG  G VG PG  G+ G          +G+ GP       G R
Sbjct: 278 GPKGPTGNPGLPGIPGPKGNRGDVGLPGAPGVDG----------VGHQGP------AGPR 321

Query: 182 GPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPG---KDGLPGKDGIPGTN 235
           G KGD G  GR GLDGRDG+PGEPGLDG+PGR G DG   +PG   KDGL GKDG  G +
Sbjct: 322 GQKGDAGAVGRAGLDGRDGVPGEPGLDGVPGRAGADGKNGLPGRDGKDGLHGKDGKDGLS 381

Query: 236 -----------GTNGEKGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPN-SETSQL 283
                      G  G KG+ GPRG  GK G NG PG P I A+K +     PN S ++ L
Sbjct: 382 ITGPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTPGVPGINAWKMQ----FPNGSSSNDL 437

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV 343
           LIPP+I    +      I+V EG ++ L C ATG+P P + W+  + + I +   + +++
Sbjct: 438 LIPPSITDLHNPEFHRTIIVEEGRSLNLSCSATGNPAPQVEWRREDGRTINVNGMEMASI 497

Query: 344 ASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTAT 388
           +   L F  I R  M AY C A+N                 P I +  + +      +AT
Sbjct: 498 SGQYLKFINITRHQMAAYTCYANNGIAPVANATFIVEVHFAPMISVYRQTIYAEYQSSAT 557

Query: 389 LECEVEAFPLSVRYWE-FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447
           LEC+VEAFP ++RYWE   DG +++    KY I     G+++  M+L IS++   DF  Y
Sbjct: 558 LECQVEAFPEAIRYWERAYDGKILDPSD-KYGIESYPDGNFKTSMRLTISSLRKDDFGYY 616

Query: 448 RCISKNEVDIAKGSLILFESNAKTP-VPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPP 506
            C+++NE++    +++ FE   + P   T      + VY + P PE +   CP   +C  
Sbjct: 617 HCVARNELN---ATMVNFEVAPQDPNSETPYVGNSIKVYGQRP-PESE---CP---VCDQ 666

Query: 507 CSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTS 566
           C D +  + CK+           +F+++  GN+S  GLP R   C +YAVGKPVFHK  +
Sbjct: 667 CPDPSL-YQCKDSIL-------NNFEIQATGNLSYPGLPKRQKTCYLYAVGKPVFHKVVN 718

Query: 567 MKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDA-KSWT 625
            K           FG+W++DP P S + EK ++T ++DP +L E+  +  ++ ++     
Sbjct: 719 EK-----------FGSWLRDPAPES-DREKTFVTNENDPYNLFEFTTRIQYRMNSVPRRK 766

Query: 626 YNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGS-SKIINIVNLSTVDPNIKLYKTGY 684
           Y + E F GNAHVVFNNSFYYH++ S+ +V+ DL S  KI   +  + V    +LY T Y
Sbjct: 767 YEIPEGFYGNAHVVFNNSFYYHQRNSDLVVKLDLTSLKKITTQLPYAGVASANRLYTTDY 826

Query: 685 NVMDFSLDENGLWVIYGLSN-NNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLY 743
           N MDF++DE GLWVIY   N NNT V KLD+ TL++QY +NITL H + G+MF+VCG LY
Sbjct: 827 NYMDFNVDEVGLWVIYSTYNSNNTLVAKLDSETLKMQYNFNITLDHHQFGEMFIVCGNLY 886

Query: 744 VVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTY 803
            +DS TD+NT IR+ +DLYK  LL  +L F+NPF++TT + YN    +LY+WD+GN+LTY
Sbjct: 887 AIDSGTDKNTQIRYVVDLYKGKLLNTNLPFSNPFSHTTTVGYNPLTVELYSWDKGNALTY 946

Query: 804 PIRYHE 809
           PIRY+E
Sbjct: 947 PIRYNE 952

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198468827|ref|XP_001354827.2| GA19916 [Drosophila pseudoobscura pseudoobscura] gi|198146589|gb|EAL31882.2| GA19916 [Drosophila pseudoobscura pseudoobscura]

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 329/822 (40%), Positives = 457/822 (55%), Gaps = 102/822 (12%)

Query: 35  RFRRHVDKDKGDIFDNSVPQTPHVEFVPPD----LYE---EIREREKEQQNSTHNNPWVW 87
           R R  V +D       S+   P +EF  P+    L E   EIR+R  ++  +   + W++
Sbjct: 182 RMRMRVRRDIASS-PASMHADPLIEFFNPNHRMALEEQDSEIRKRTGQKGAAPGGDEWIY 240

Query: 88  LNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGP 147
           LN Y R+P   + GFC  T++YCPP    P+G  GE G KG                 G 
Sbjct: 241 LNTYCRVPEKIITGFCKGTQDYCPPA---PVGPPGESGPKGP---------------TGN 282

Query: 148 PGPQGIPGDEGKRGPKGDMGYPGPQGI--PGDEGKRGPKGDMGYPGRIGLDGRDGLPGEP 205
           PG  GIPG +G RG  G  G PG  G+   G  G RGPKGD G  GR GLDGRDG+PGEP
Sbjct: 283 PGLPGIPGPKGNRGDVGLPGAPGVDGVGHVGPAGPRGPKGDAGGVGRSGLDGRDGVPGEP 342

Query: 206 GLDGIPGRNGMDGI------PGKDGLPGKDGIPGTN-----------GTNGEKGMTGPRG 248
           GLDG+PGR G DG        GKDGL GKDG  G +           G  G KG+ GPRG
Sbjct: 343 GLDGVPGRAGADGKNGQPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRG 402

Query: 249 NRGKSGINGVPGTPAICAYKRESCSLLPN-SETSQLLIPPTIVGSEHIFSSSPIVVREGD 307
             GK G NG PG P I A+K +     PN S ++ LLIPP+I           ++V EG 
Sbjct: 403 RPGKPGTNGTPGVPGINAWKMQ----FPNGSSSNDLLIPPSITDLHAPDFHRTVIVEEGR 458

Query: 308 NVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
           ++ L C ATG P+P + W+  + + I +   + ++++   L FT I R  M AY C A+N
Sbjct: 459 SLNLSCTATGSPQPQVEWRREDGRTINVNGMEMASISGQFLKFTNITRHQMAAYTCYANN 518

Query: 368 ---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE-FIDGTLI 411
                            P I +  + +      +ATLEC VEAFP ++RYWE   DG ++
Sbjct: 519 GIAPVANATFIVEVHFAPMISVYRQMIYAEYQSSATLECLVEAFPEAIRYWERAYDGKIL 578

Query: 412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT 471
           +    KYSI     G ++  M+L I+N+   DF  Y C+++NE++    +++ FE   + 
Sbjct: 579 D-PSEKYSIESYPDG-FKTSMRLTINNLRKDDFGYYHCVARNELN---ATMVNFEIAPQD 633

Query: 472 P-VPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRD 530
           P   T      + VY + P PE +   CP   +C  C D +  + CK+           +
Sbjct: 634 PNSETPYVGNSIKVYGQRP-PESE---CP---VCDQCPDPSL-YQCKDSIL-------NN 678

Query: 531 FDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPT 590
           F+++P GN+S  GLP R   C +YAVGKPVFHK  + K           FG+W++DP P 
Sbjct: 679 FEIQPTGNLSYPGLPKRPKTCYLYAVGKPVFHKVVNEK-----------FGSWLRDPAPD 727

Query: 591 SGNSEKFWMTTDSDPTHLNEYKDKDMFKSDA-KSWTYNLKEPFQGNAHVVFNNSFYYHKK 649
           S + EK ++T ++DP +L E+  +  ++ ++     Y + E F GNAHVVFN SFYYH++
Sbjct: 728 S-DREKTFVTNENDPYNLFEFTTRIQYRMNSVPRRKYEIPEGFHGNAHVVFNGSFYYHQR 786

Query: 650 FSNSIVQFDLGS-SKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSN-NNT 707
            S+ +V+ DL S  KI   +  + V  + +LY T +N MDF++DE GLWVIY   N NNT
Sbjct: 787 NSDLVVKLDLISLKKITTQLPYAGVAASNRLYATDFNFMDFNVDEVGLWVIYSTYNSNNT 846

Query: 708 AVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLL 767
            V KLD  TL++QY +NITL H + G+MF+VCG LY +DS TD+NT IR+ +DLYK  LL
Sbjct: 847 LVAKLDAETLKMQYNFNITLDHHQFGEMFIVCGNLYAIDSATDKNTQIRYVVDLYKGKLL 906

Query: 768 EVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE 809
             +L F+NPF++TT + YN    +LY+WD+GN+LTYPIRY+E
Sbjct: 907 NTNLPFSNPFSHTTTVGYNPLTVELYSWDKGNALTYPIRYNE 948

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195166846|ref|XP_002024245.1| GL14936 [Drosophila persimilis] gi|194107618|gb|EDW29661.1| GL14936 [Drosophila persimilis]

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 329/822 (40%), Positives = 457/822 (55%), Gaps = 102/822 (12%)

Query: 35  RFRRHVDKDKGDIFDNSVPQTPHVEFVPPD----LYE---EIREREKEQQNSTHNNPWVW 87
           R R  V +D       S+   P +EF  P+    L E   EIR+R  ++  +   + W++
Sbjct: 188 RMRMRVRRDIASS-PASMHADPLIEFFNPNHRMALEEQDSEIRKRTGQKGAAPGGDEWIY 246

Query: 88  LNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGP 147
           LN Y R+P   + GFC  T++YCPP    P+G  GE G KG                 G 
Sbjct: 247 LNTYCRVPEKIITGFCKGTQDYCPPA---PVGPPGESGPKGP---------------TGN 288

Query: 148 PGPQGIPGDEGKRGPKGDMGYPGPQGIP--GDEGKRGPKGDMGYPGRIGLDGRDGLPGEP 205
           PG  GIPG +G RG  G  G PG  G+   G  G RGPKGD G  GR GLDGRDG+PGEP
Sbjct: 289 PGLPGIPGPKGNRGDVGLPGAPGVDGVGHLGPAGPRGPKGDAGGVGRSGLDGRDGVPGEP 348

Query: 206 GLDGIPGRNGMDGI------PGKDGLPGKDGIPGTN-----------GTNGEKGMTGPRG 248
           GLDG+PGR G DG        GKDGL GKDG  G +           G  G KG+ GPRG
Sbjct: 349 GLDGVPGRAGADGKNGQPGRDGKDGLNGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRG 408

Query: 249 NRGKSGINGVPGTPAICAYKRESCSLLPN-SETSQLLIPPTIVGSEHIFSSSPIVVREGD 307
             GK G NG PG P I A+K +     PN S ++ LLIPP+I           ++V EG 
Sbjct: 409 RPGKPGTNGTPGVPGINAWKMQ----FPNGSSSNDLLIPPSITDLHAPDFHRTVIVEEGR 464

Query: 308 NVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
           ++ L C ATG P+P + W+  + + I +   + ++++   L FT I R  M AY C A+N
Sbjct: 465 SLNLSCTATGSPQPQVEWRREDGRTINVNGMEMASISGQFLKFTNITRHQMAAYTCYANN 524

Query: 368 ---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE-FIDGTLI 411
                            P I +  + +      +ATLEC VEAFP ++RYWE   DG ++
Sbjct: 525 GIAPVANATFIVEVHFAPMISVYRQMIYAEYQSSATLECLVEAFPEAIRYWERAYDGKIL 584

Query: 412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT 471
           +    KYSI     G ++  M+L I+N+   DF  Y C+++NE++    +++ FE   + 
Sbjct: 585 D-PSEKYSIESYPDG-FKTSMRLTINNMRKDDFGYYHCVARNELN---ATMVNFEIAPQD 639

Query: 472 P-VPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRD 530
           P   T      + VY + P PE +   CP   +C  C D +  + CK+           +
Sbjct: 640 PNSETPYVGNSIKVYGQRP-PESE---CP---VCDQCPDPSL-YQCKDSIL-------NN 684

Query: 531 FDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPT 590
           F+++P GN+S  GLP R   C +YAVGKPVFHK  + K           FG+W++DP P 
Sbjct: 685 FEIQPTGNLSYPGLPKRPKTCYLYAVGKPVFHKVVNEK-----------FGSWLRDPAPD 733

Query: 591 SGNSEKFWMTTDSDPTHLNEYKDKDMFKSDA-KSWTYNLKEPFQGNAHVVFNNSFYYHKK 649
           S + EK ++T ++DP +L E+  +  ++ ++     Y + E F GNAHVVFN SFYYH++
Sbjct: 734 S-DREKTFVTNENDPYNLFEFTTRIQYRMNSVPRRKYEIPEGFHGNAHVVFNGSFYYHQR 792

Query: 650 FSNSIVQFDLGS-SKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSN-NNT 707
            S+ +V+ DL S  KI   +  + V  + +LY T +N MDF++DE GLWVIY   N NNT
Sbjct: 793 NSDLVVKLDLISLKKITTQLPYAGVAASNRLYATDFNFMDFNVDEVGLWVIYSTYNSNNT 852

Query: 708 AVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLL 767
            V KLD  TL++QY +NITL H + G+MF+VCG LY +DS TD+NT IR+ +DLYK  LL
Sbjct: 853 LVAKLDAETLKMQYNFNITLDHHQFGEMFIVCGNLYAIDSATDKNTQIRYVVDLYKGKLL 912

Query: 768 EVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE 809
             +L F+NPF++TT + YN    +LY+WD+GN+LTYPIRY+E
Sbjct: 913 NTNLPFSNPFSHTTTVGYNPLTVELYSWDKGNALTYPIRYNE 954

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457114|ref|XP_002075432.1| GK15168 [Drosophila willistoni] gi|194171517|gb|EDW86418.1| GK15168 [Drosophila willistoni]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 319/820 (38%), Positives = 457/820 (55%), Gaps = 101/820 (12%)

Query: 35  RFRRHVDKDKGDIFDNSVPQTPHVEFVPPDLYE-------EIREREKEQQNSTHNNPWVW 87
           R RR V          S+   P +EF  P+  +       EIR+R   +  +   + W++
Sbjct: 206 RMRRDVTSPTA-----SMHADPLIEFFNPNHRKVLDEQDAEIRKRTGLKGAAPGGDEWIY 260

Query: 88  LNAYSRIPLVAMQGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGP 147
           LN Y R+P   + GFC  T++YCPP  QGP         +G++G KG  G  G PG+   
Sbjct: 261 LNTYCRVPEQIITGFCKGTQDYCPPAPQGP---------QGDIGPKGPTGNPGLPGI--- 308

Query: 148 PGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGL 207
           PGP+G  GD G  G  G  G     G+ G  G RGPKGD G  GR GLDGRDG+PGEPGL
Sbjct: 309 PGPKGNRGDVGLPGAPGVDGI----GVQGPAGPRGPKGDAGGVGRAGLDGRDGVPGEPGL 364

Query: 208 DGIPGR------NGMDGIPGKDGLPGKDGIPGTN-----------GTNGEKGMTGPRGNR 250
           DG+PGR      NG+ G  GKDGL GKDG  G +           G  G KG+ GPRG  
Sbjct: 365 DGVPGRAGADGKNGLAGRDGKDGLHGKDGKDGMSITGPKGAQGPPGERGLKGIAGPRGRP 424

Query: 251 GKSGINGVPGTPAICAYKRESCSLLPN-SETSQLLIPPTIVGSEHIFSSSPIVVREGDNV 309
           GK G NG PG P I A+K +     PN S ++ LLIPP+I       +   ++V EG  +
Sbjct: 425 GKPGTNGTPGIPGINAWKMQ----YPNGSASNDLLIPPSITDLRSPDAQRSVIVEEGRTL 480

Query: 310 RLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-- 367
            L C ATG+P P + W+  + + I +   + ++++   L FT I R  M AY C A+N  
Sbjct: 481 NLSCSATGNPVPKVEWRRDDGRTINVNGMEMASISGQFLKFTNITRHQMAAYTCFANNGI 540

Query: 368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE-FIDGTLIEH 413
                          P I +  + +      +ATLEC+VEAFP ++RYWE   DG +++ 
Sbjct: 541 APVANATFLVEVHFAPMISVYRQMIYAEYQSSATLECQVEAFPEAIRYWERAYDGKILDP 600

Query: 414 DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP- 472
              KY I     G ++  M+L I+N+   DF  Y C+++NE++    +++ FE   + P 
Sbjct: 601 SD-KYRIESYPDG-FKTSMRLTINNLRKDDFGYYHCVARNELN---ATMVNFEIAPQDPN 655

Query: 473 VPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFD 532
             T      + VY + P PE +   CP   +C  C D +  + CK+           +F+
Sbjct: 656 SETPYVGNNIKVYGQRP-PESE---CP---VCDQCPDPSL-YQCKDSIL-------NNFE 700

Query: 533 VKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSG 592
           ++P GN+S  GLP R   C +YAVGKPVFHK  + K           FG+W++D  P+  
Sbjct: 701 IQPTGNLSYPGLPKRPKTCYLYAVGKPVFHKVVNEK-----------FGSWLRDAAPSDK 749

Query: 593 NSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSW-TYNLKEPFQGNAHVVFNNSFYYHKKFS 651
           + +K ++T ++DP +L E+  +  ++ ++     Y + E F GNAH VFN SFYY +K +
Sbjct: 750 DRDKTFVTNENDPYNLFEFTTRQQYRMNSVPMHKYKIPEGFHGNAHAVFNGSFYYQQKNT 809

Query: 652 NSIVQFDLGSS-KIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYG-LSNNNTAV 709
           + +V+ DL ++ KI   +  + +  + +LYKT +N MDF++DE GLWVIY    +NNT V
Sbjct: 810 DLVVKLDLFTNEKITTQLPYAGIAASNRLYKTDFNYMDFNVDEVGLWVIYSTYDSNNTMV 869

Query: 710 TKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEV 769
            KLD  TL++QY +NITL H + G+MF+VCG LY +DS TD+NT IR+ +DLYK  LL  
Sbjct: 870 AKLDAKTLKMQYNFNITLDHHQFGEMFIVCGNLYAIDSGTDKNTQIRYVVDLYKGKLLNT 929

Query: 770 SLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE 809
           +L F+NPF++TT + YN    +LY+WD+GN+LTYPIRY+E
Sbjct: 930 NLPFSNPFSHTTTVGYNPLTVELYSWDKGNALTYPIRYNE 969

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	902
MGI|MGI:2388361	549	Gldn "gliomedin" [Mus musculus	0.253	0.417	0.295	3e-44
RGD|727879	549	Gldn "gliomedin" [Rattus norve	0.253	0.417	0.283	2.4e-43
UNIPROTKB|F1RYN3	551	GLDN "Uncharacterized protein"	0.253	0.415	0.291	4.6e-42
UNIPROTKB|Q6ZMI3	551	GLDN "Gliomedin" [Homo sapiens	0.253	0.415	0.295	4.6e-42
UNIPROTKB|E1BN05	551	GLDN "Uncharacterized protein"	0.253	0.415	0.295	8.3e-42
UNIPROTKB|F1NBS7	528	GLDN "Uncharacterized protein"	0.272	0.465	0.290	1.5e-40
UNIPROTKB|I3LHF9	357	OLFM1 "Uncharacterized protein	0.311	0.787	0.290	3.3e-33
UNIPROTKB|F1N764	467	OLFM1 "Uncharacterized protein	0.311	0.601	0.283	1.5e-32
UNIPROTKB|Q9IAK4	485	OLFM1 "Noelin" [Gallus gallus	0.308	0.573	0.295	1.8e-32
WB|WBGene00006845	598	unc-122 [Caenorhabditis elegan	0.152	0.230	0.314	7.3e-32

MGI|MGI:2388361 Gldn "gliomedin" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
 Identities = 73/247 (29%), Positives = 125/247 (50%)

Query:   571 SSGKPVDVI-----FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWT 625
             S G P  V+     FG WM++    + + ++ W+T       + E+KD     +   S+T
Sbjct:   303 SIGNPAQVLKVRETFGTWMRES--ANKSDDRIWVTEHFSGIMVKEFKDLPALLNS--SFT 358

Query:   626 Y-NLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS--KIINIVNLSTVDPNIKLYKT 682
               +L   F G  H V+NNS YYHK  SN+IV+F+ G    + + + N    D    L+  
Sbjct:   359 LLHLPHYFHGCGHAVYNNSLYYHKGGSNTIVRFEFGKETPQTLKLENALYFDRKY-LFAN 417

Query:   683 GYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNITLLHKKVGDMFVVCG 740
                  + ++DE G+W+IY  S + ++  V +LD  T  +    N T    K G+ F+  G
Sbjct:   418 SKTYFNIAVDEKGIWIIYASSVDGSSILVAQLDERTFSVTQHINTTYPKSKAGNAFIARG 477

Query:   741 VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNS 800
             +LYV D+   ++T + FA DL     +  + +F    +   M++YN R + LY+W+ G+ 
Sbjct:   478 ILYVTDT---KDTRVTFAFDLLGGKQINANFDFRMSQSVLAMLSYNMRDQHLYSWEDGHL 534

Query:   801 LTYPIRY 807
             + YP+++
Sbjct:   535 MLYPVQF 541

GO:0005581 "collagen" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0032528 "microvillus organization" evidence=IMP

GO:0045162 "clustering of voltage-gated sodium channels" evidence=IMP

GO:0086080 "protein binding involved in heterotypic cell-cell adhesion" evidence=IGI

RGD|727879 Gldn "gliomedin" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.4e-43, Sum P(3) = 2.4e-43
 Identities = 70/247 (28%), Positives = 123/247 (49%)

Query:   571 SSGKPVDVI-----FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWT 625
             S G P  V+     FG W+++    + + ++ W+T       + E++D     +   S+T
Sbjct:   303 SIGNPAQVLKVKETFGTWLRES--ANRSDDRIWVTEHFSGIMVKEFEDLPALLNS--SFT 358

Query:   626 Y-NLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS--KIINIVNLSTVDPNIKLYKT 682
               +L   F G  H V+NNS YYHK  SN+IV+F+ G    + + + +    D    L+  
Sbjct:   359 LLHLPHYFHGCGHAVYNNSLYYHKGGSNTIVRFEFGKETPQTLKLEDALYFDRKY-LFAN 417

Query:   683 GYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNITLLHKKVGDMFVVCG 740
                  + ++DE GLW+IY  S + ++  V +LD  T  +    N T    K G+ F+  G
Sbjct:   418 SKTYFNIAVDEKGLWIIYASSVDGSSILVAQLDERTFSVLRHINTTYPKSKAGNAFIAQG 477

Query:   741 VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNS 800
             +LYV D+   ++T + FA DL +   +  +       +   M++YN R + LY+W+ G+ 
Sbjct:   478 ILYVTDT---KDTRVTFAFDLLRGKQINANFGLRMSQSVLAMLSYNMRDQHLYSWEDGHL 534

Query:   801 LTYPIRY 807
             + YP+ +
Sbjct:   535 MLYPVHF 541

GO:0005581 "collagen" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007399 "nervous system development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0032528 "microvillus organization" evidence=ISO

GO:0045162 "clustering of voltage-gated sodium channels" evidence=ISO

GO:0086080 "protein binding involved in heterotypic cell-cell adhesion" evidence=ISO

UNIPROTKB|F1RYN3 GLDN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 309 (113.8 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
 Identities = 72/247 (29%), Positives = 126/247 (51%)

Query:   571 SSGKPVDVI-----FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWT 625
             S G P  V+     FG W+++    + + E+ W+T       + E++D+    +   S+T
Sbjct:   306 SIGNPTQVLKVKETFGTWIRES--ANKSDERIWVTEHFSGIRVKEFEDQPSLLNG--SYT 361

Query:   626 Y-NLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLG--SSKIINIVNLSTVDPNIKLYKT 682
               +L   F G  H V+NNS YYHK  SN+IV+F+ G  +S+ + + N    D    L+  
Sbjct:   362 LIHLPYYFHGCGHTVYNNSLYYHKGGSNTIVRFEFGKETSQTLKLENALYFDRKY-LFAN 420

Query:   683 GYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNITLLHKKVGDMFVVCG 740
                  + ++DE GLW+IY  S + ++  V +LD  T  +    N T    K G+ F+  G
Sbjct:   421 SKTYFNLAVDEKGLWIIYASSMDGSSILVAQLDERTFSVVQHINTTYPKSKAGNAFIAQG 480

Query:   741 VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNS 800
             +LYV D+   ++  + FA DL     +  + +     +   M++YN R + LY+W+ G+ 
Sbjct:   481 ILYVTDT---KDMRVTFAFDLLAGKQINANFDLRTSQSVLAMLSYNMRDQHLYSWEDGHL 537

Query:   801 LTYPIRY 807
             + YP+++
Sbjct:   538 MLYPVQF 544

GO:0005886 "plasma membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

UNIPROTKB|Q6ZMI3 GLDN "Gliomedin" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
 Identities = 73/247 (29%), Positives = 128/247 (51%)

Query:   571 SSGKPVDVI-----FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWT 625
             S G PV V+     FG W+++    + + ++ W+T       + E+KD+    +   S+T
Sbjct:   306 SIGNPVQVLKVTETFGTWIRES--ANKSDDRIWVTEHFSGIMVKEFKDQPSLLNG--SYT 361

Query:   626 Y-NLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLG--SSKIINIVNLSTVDPNIKLYKT 682
             + +L   F G  HVV+NNS YYHK  SN++V+F+ G  +S+ + + N    D    L+  
Sbjct:   362 FIHLPYYFHGCGHVVYNNSLYYHKGGSNTLVRFEFGQETSQTLKLENALYFDRKY-LFAN 420

Query:   683 GYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNITLLHKKVGDMFVVCG 740
                  + ++DE GLW+IY  S + ++  V +LD  T  +    N T    K G+ F+  G
Sbjct:   421 SKTYFNLAVDEKGLWIIYASSVDGSSILVAQLDERTFSVVQHVNTTYPKSKAGNAFIARG 480

Query:   741 VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNS 800
             +LYV D+   ++  + FA DL     +  + +     +   M+ YN R + LY+W+ G+ 
Sbjct:   481 ILYVTDT---KDMRVTFAFDLLGGKQINANFDLRTSQSVLAMLAYNMRDQHLYSWEDGHL 537

Query:   801 LTYPIRY 807
             + YP+++
Sbjct:   538 MLYPVQF 544

GO:0005581 "collagen" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|E1BN05 GLDN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 306 (112.8 bits), Expect = 8.3e-42, Sum P(3) = 8.3e-42
 Identities = 73/247 (29%), Positives = 126/247 (51%)

Query:   571 SSGKPVDVI-----FGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWT 625
             S G P+ V+     FG W+++    + + E+ W+T       + E++D+    +   S+T
Sbjct:   306 SIGSPIQVLKVKETFGTWIRES--ANKSDERIWVTEHFSGIRVKEFEDQPSLLNG--SYT 361

Query:   626 Y-NLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLG--SSKIINIVNLSTVDPNIKLYKT 682
               +L   F G  H V NNS YYHK  SN+IV+F+ G  +S+ + + N    D    L+  
Sbjct:   362 LIHLPYYFHGCGHTVHNNSLYYHKGGSNTIVRFEFGKETSQTLKLENALYFDRKY-LFAN 420

Query:   683 GYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNITLLHKKVGDMFVVCG 740
                  + ++DE GLW+IY  S + ++  V +L+  T  +    N T    K G+ F+  G
Sbjct:   421 SKTYFNLAVDEKGLWIIYASSVDGSSILVAQLEERTFSVVQHINTTYPKSKAGNAFIARG 480

Query:   741 VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNS 800
             +LYV D+   ++T I FA DL     +  +       +   M++YN R + LY+W+ G+ 
Sbjct:   481 ILYVTDT---KDTRITFAFDLLGGKQINANFALRTSQSVLAMLSYNMRDQHLYSWEDGHL 537

Query:   801 LTYPIRY 807
             + YP+++
Sbjct:   538 MLYPVQF 544

GO:0005886 "plasma membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

UNIPROTKB|F1NBS7 GLDN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 305 (112.4 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
 Identities = 76/262 (29%), Positives = 122/262 (46%)

Query:   555 AVGKPVFH-KSTSMKKESSGKPVDVI-----FGAWMKDPHPTSGNSEKFWMTTDSDPTHL 608
             A  +P  H K       S G PV  +     FG WM++P   S   E+ W+T       +
Sbjct:   272 AEDRPSDHSKKAECVITSVGSPVHFVSVQQTFGTWMREPANVS--DERIWLTMHFSGNSI 329

Query:   609 NEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKI--IN 666
              EY++ +   +D      N+   F G  H V NN  YY K  +N I++  L  + +  + 
Sbjct:   330 KEYENSNALLNDTYR-IINITGFFYGCGHAVQNNHLYYQKGGTNVILKLGLDKASLGTLL 388

Query:   667 IVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTA-VTKLDTATLQIQYTWNI 725
             I N      N  L+       + ++DE GLW+IY  S + T  V  +D  T  I    N 
Sbjct:   389 IENALYHGRNY-LFSNSKTYFNVAVDEKGLWIIYASSTDETIIVAHIDEETFSIIRHINT 447

Query:   726 TLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITY 785
             T    K G+ F+ CG++YV D+   ++  + FA DL K   ++      +  +   M++Y
Sbjct:   448 TYPKSKAGNAFIACGIMYVTDT---KDMTVSFAFDLLKEKQIDARFELRSSQSVLAMLSY 504

Query:   786 NSRYKDLYTWDRGNSLTYPIRY 807
             + R K+LYTW+ G+ + YP+ +
Sbjct:   505 SLRDKNLYTWENGSLMVYPVHF 526

GO:0005615 "extracellular space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|I3LHF9 OLFM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
 Identities = 86/296 (29%), Positives = 148/296 (50%)

Query:   526 LGRRDFDVKPLGNVSSKGLPNRTLDC-QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWM 584
             +G  D+D   L N  S  L  R   C Q  A GK +   S  +  ++SG      FG+WM
Sbjct:    71 IGAHDYD--ELQNRVSN-LEERLRACMQKLACGK-LTGISDPVTVKTSGSR----FGSWM 122

Query:   585 KDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSF 644
              DP    G++  ++M    +   + EYK    F +     ++ L  P+ G   VV+N S 
Sbjct:   123 TDPLAPEGDNRVWYMDGYHNNRFVREYKSMLDFMTTDNFTSHRLPHPWSGTGQVVYNGSI 182

Query:   645 YYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKT--GYNVMDFSLDENGLWVIYGL 702
             Y++K  S+ +++FDL +  I+   +L     N   +    G++ +D  +DENGLW +Y  
Sbjct:   183 YFNKFQSHIVIRFDLKTESILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLWAVYAT 242

Query:   703 SNN--NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALD 760
             + N  N  ++KLD  +LQ+  TWN +   +  G+ F++CG LYV +  +   T + +A  
Sbjct:   243 NQNAGNIVISKLDPVSLQVLQTWNTSYPKRSAGEAFIICGTLYVTNGYSG-GTKVHYAYQ 301

Query:   761 LYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIR-YHEIDSYNL 815
                +    + + F N +++ +M+ YN + + LY W+ G+ + Y +  +H I S  L
Sbjct:   302 TNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQVLYNVTLFHVIRSDEL 357

GO:0051259 "protein oligomerization" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

UNIPROTKB|F1N764 OLFM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
 Identities = 84/296 (28%), Positives = 149/296 (50%)

Query:   526 LGRRDFDVKPLGNVSSKGLPNRTLDC-QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWM 584
             +G  D+D +    VS+  L  R   C Q  A GK +   S  +  ++SG      FG+WM
Sbjct:   181 IGAYDYD-ELQSRVSN--LEERLRACMQKLACGK-LTGISDPVTIKTSGSR----FGSWM 232

Query:   585 KDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSF 644
              DP    G++  ++M    +   + EYK    F +     ++ L  P+ G   VV+N S 
Sbjct:   233 TDPLAPEGDNRVWYMDGYHNNRFVREYKSMLDFMTTDNFTSHRLPHPWSGTGQVVYNGSI 292

Query:   645 YYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKT--GYNVMDFSLDENGLWVIYGL 702
             Y++K  S+ +++FDL +  I+   +L     N   +    G++ +D  +DENGLW +Y  
Sbjct:   293 YFNKFQSHIVIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLWAVYAT 352

Query:   703 SNN--NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALD 760
             + N  N  +++LD  +LQ+  TWN +   +  G+ F++CG LYV +  +   T + +A  
Sbjct:   353 NQNAGNIVISRLDPVSLQVLQTWNTSYPKRSAGEAFIICGTLYVTNGYSG-GTKVHYAYQ 411

Query:   761 LYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIR-YHEIDSYNL 815
                +    + + F N +++ +M+ YN + + LY W+ G+ + Y +  +H I S  L
Sbjct:   412 TNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQILYNVTLFHVIRSDEL 467

GO:0051259 "protein oligomerization" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

UNIPROTKB|Q9IAK4 OLFM1 "Noelin" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
 Identities = 86/291 (29%), Positives = 146/291 (50%)

Query:   531 FDVKPLGNVSSKGLPNRTLDC-QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHP 589
             +D + L N  S  L  R   C Q  A GK +   S  +  ++SG      FG+WM DP  
Sbjct:   202 YDYEELQNRVSN-LEERLRACMQKLACGK-LTGISDPITIKTSGSR----FGSWMTDPLA 255

Query:   590 TSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKK 649
               G ++ ++M +  +   + EYK    F +     ++ L  P+ G   VV+N S Y++K 
Sbjct:   256 PEGENKVWYMDSYHNNRFVREYKSMADFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKY 315

Query:   650 FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKT--GYNVMDFSLDENGLWVIYGLSNN-- 705
              S+ I++FDL +  I+   +L     N   +    G++ +D  +DENGLW +Y  + N  
Sbjct:   316 QSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLWAVYATNQNAG 375

Query:   706 NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKND 765
             N  ++KLD  TLQ   TWN +   +  G+ F++CG LYV +  +   T + +A     + 
Sbjct:   376 NIVISKLDPNTLQSLQTWNTSYPKRSAGEAFIICGTLYVTNGYSG-GTKVHYAYQTNAST 434

Query:   766 LLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIR-YHEIDSYNL 815
                + + F N +++ +M+ YN + + LY W+ G+ + Y +  +H I S  L
Sbjct:   435 YEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQILYNVTLFHVIRSDEL 485

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

WB|WBGene00006845 unc-122 [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
 Identities = 44/140 (31%), Positives = 76/140 (54%)

Query:   671 STVDPNIKLYKTGYNVMDFSLDENGLWVIY-GLSNNNTAVTKLDTATLQIQYTWNITLLH 729
             +  D ++ LY   +N +DF++DENGLW IY G  +    + K++ +   +   WN+ +  
Sbjct:   452 NATDRHVWLYDRPHNYVDFAVDENGLWAIYAGADSETMRMAKIEPSLFVVNI-WNVEVNT 510

Query:   730 KKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRY 789
              ++ D F++CGV Y + S  +  T I  A DL++ND +   + + NP+   TM+ YN   
Sbjct:   511 TEIADSFIMCGVWYGLKSANNLQTQITHAYDLFRNDTIPGQVEWYNPYQGLTMLHYNPLD 570

Query:   790 KDLYTWDRGNSLTYPIRYHE 809
               LY +D  + L+  +R  E
Sbjct:   571 ARLYFFDNSSLLSVNVRIEE 590

GO:0016021 "integral to membrane" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	902
pfam02191	250	pfam02191, OLF, Olfactomedin-like domain	7e-73
smart00284	255	smart00284, OLF, Olfactomedin-like domains	3e-40
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	2e-13
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	4e-13
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	6e-13
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	7e-13
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	9e-13
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	3e-12
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	3e-12
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	4e-09
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	7e-09
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	1e-08
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	3e-08
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	5e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-08
smart00409	85	smart00409, IG, Immunoglobulin	5e-08
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	6e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-07
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	7e-07
smart00409	85	smart00409, IG, Immunoglobulin	7e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	1e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	6e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	5e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	6e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	6e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.001
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.002
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.003
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.004
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.004

>gnl|CDD|216924 pfam02191, OLF, Olfactomedin-like domain

 Score =  239 bits (613), Expect = 7e-73
 Identities = 90/262 (34%), Positives = 135/262 (51%), Gaps = 18/262 (6%)

Query: 553 VYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYK 612
           + +V KPV  K    K           +GAWMKDP P S + + +     S  T L E++
Sbjct: 2   LASVSKPVTVKKAGYK-----------YGAWMKDPLPPSDDDKVYVTDGYSGDT-LFEFR 49

Query: 613 DKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIIN---IVN 669
           + + FK      TY L  P+QG  HVV+N S YY++  S +I+++DL +  ++    + N
Sbjct: 50  NLEDFKQGRPFKTYRLPYPWQGTGHVVYNGSLYYNRYNSRTIIKYDLTTRTVVATRVLPN 109

Query: 670 LSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGL--SNNNTAVTKLDTATLQIQYTWNITL 727
               +        G   +D ++DENGLWVIY    +N N  ++KLD  TL ++ TW+   
Sbjct: 110 AGYNNTFP-YSWGGKTDIDLAVDENGLWVIYATEENNGNIVLSKLDPETLDVEQTWDTGY 168

Query: 728 LHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNS 787
             +  G+ F+VCGVLYV  S + R+T I +A D         S+ F N +   +M+ YN 
Sbjct: 169 PKRSAGNAFMVCGVLYVTRSYSLRDTRIFYAYDTSTGTEEAPSIPFPNRYGYISMLDYNP 228

Query: 788 RYKDLYTWDRGNSLTYPIRYHE 809
           R + LY WD G  LTY +R+  
Sbjct: 229 RDRKLYAWDNGYQLTYDLRFKP 250

Length = 250

>gnl|CDD|128580 smart00284, OLF, Olfactomedin-like domains

 Score =  148 bits (376), Expect = 3e-40
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 24/260 (9%)

Query: 556 VGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWM--TTDSDPTHLNEYKD 613
           + KPV     +++    GK      GAWMKDP   +     +W           + EY  
Sbjct: 6   ISKPV-----TLQTSWKGK-----SGAWMKDPLWNTTKKSLYWYMPLNTRVLRSVREYSS 55

Query: 614 KDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGS-----SKIINIV 668
              F+       + L    QG   VV+N S Y++K  S+ I +FDL +       ++N  
Sbjct: 56  MSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGA 115

Query: 669 NLSTVDPNIKLYK-TGYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNI 725
             +   P    Y   G++ +D ++DENGLWVIY    N     ++KL+ ATL I+ TW  
Sbjct: 116 GYNNRFP----YAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT 171

Query: 726 TLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITY 785
           T   +   + F++CG+LYV  S+  +   + +A D        + + F N +   +M+ Y
Sbjct: 172 TYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDY 231

Query: 786 NSRYKDLYTWDRGNSLTYPI 805
           N   + LY W+ G+ + Y I
Sbjct: 232 NPNDRKLYAWNNGHLVHYDI 251

Length = 255

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 33/66 (50%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRD 199
           G PG  GPPGP G P   G  GP G  G PGP G PG  G  GP G  G P   G  G  
Sbjct: 1   GPPGPPGPPGPPGPP---GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP---GPPGAP 54

Query: 200 GLPGEP 205
           G PG P
Sbjct: 55  GAPGPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 29/60 (48%), Positives = 29/60 (48%)

Query: 122 GEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKR 181
           G  G  G  G  G  G  G PG  GPPGP G PG  G  GP G  G PGP G PG  G  
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 64.0 bits (157), Expect = 6e-13
 Identities = 31/58 (53%), Positives = 31/58 (53%)

Query: 134 GERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPG 191
           G  G  G PG  GPPGP G PG  G  GP G  G PGP G PG  G  GP G  G PG
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 63.7 bits (156), Expect = 7e-13
 Identities = 29/61 (47%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPK 184
           G  G  G  G  G  G PG   PPGP G PG  G  GP G  G PGP G PG  G  G  
Sbjct: 1   GPPGPPGPPGPPGPPGPPG---PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57

Query: 185 G 185
           G
Sbjct: 58  G 58

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 63.3 bits (155), Expect = 9e-13
 Identities = 28/59 (47%), Positives = 28/59 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
           PPG  GP G  G  G  G  G  G  G  G PG  GPPGP G PG  G  G  G  G P
Sbjct: 2   PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 62.1 bits (152), Expect = 3e-12
 Identities = 30/60 (50%), Positives = 30/60 (50%)

Query: 131 GVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYP 190
           G  G  G  G PG  GPPGP G PG  G  GP G  G PGP G PG  G  G  G  G P
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 29/59 (49%), Positives = 29/59 (49%)

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 228
           GP G PG  G  GP G  G PG  G  G  G PG PG  G PG  G  G PG  G PG 
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 26/60 (43%), Positives = 26/60 (43%)

Query: 191 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNR 250
           G  G  G  G PG PG  G PG  G  G PG  G PG  G PG  G  G  G  G  G  
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 28/59 (47%), Positives = 28/59 (47%)

Query: 182 GPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGE 240
           GP G  G PG  G  G  G PG PG  G PG  G  G PG  G PG  G PG  G  G 
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 197 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGIN 256
           G  G PG PG  G PG  G    PG  G PG  G PG  G  G  G  GP G  G  G  
Sbjct: 1   GPPGPPGPPGPPGPPGPPGP---PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57

Query: 257 GVP 259
           G P
Sbjct: 58  GPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 22/48 (45%), Positives = 22/48 (45%)

Query: 215 GMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G PG  G PG  G PG  G  G  G  GP G  G  G  G PG P
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP 48

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 26/59 (44%), Positives = 26/59 (44%)

Query: 194 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGK 252
           G  G  G PG PG  G PG  G  G PG  G PG  G PG  G  G  G  G  G  G 
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
           V  G + TL CE    P     W    G L+   G ++S+S     S      L ISNV 
Sbjct: 6   VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSTST-----LTISNVT 59

Query: 441 ISDFDTYRCISKNEVDIAKGSLIL 464
             D  TY C + N    A     L
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
           V  G + TL CE    P     W    G L+   G ++S+S     S      L ISNV 
Sbjct: 6   VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSTST-----LTISNVT 59

Query: 441 ISDFDTYRCISKNEVDIAKGSLIL 464
             D  TY C + N    A     L
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 26/57 (45%), Positives = 26/57 (45%)

Query: 206 GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G PG  G  G PG  G PG  G PG  G  G  G  GP G  G  G  G PG P
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-----WKDSAVASSTLNFTRI 353
             + V+EG++ R  C  TG P P++ W   + +P+         ++     + TL  + +
Sbjct: 8   KDVEVQEGESARFTCTVTGDPDPTVSW-FKDGQPLRSSDRFKVTYEGG---TYTLTISNV 63

Query: 354 NRINMGAYMCLADN 367
              + G Y C+A N
Sbjct: 64  QPDDEGKYTCVATN 77

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           P+   + + V V  G +A   C V   P     W F DG  +     ++ ++        
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSW-FKDGQPL-RSSDRFKVTYEGGTY-- 56

Query: 430 YIMQLNISNVNISDFDTYRCISKNEV 455
               L ISNV   D   Y C++ N  
Sbjct: 57  ---TLTISNVQPDDEGKYTCVATNSA 79

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAVASSTLNFTRIN 354
              + V+EG++V L C A+G P P + W     K +      S   S  ++STL  + + 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59

Query: 355 RINMGAYMCLADN 367
             + G Y C A N
Sbjct: 60  PEDSGTYTCAATN 72

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAVASSTLNFTRIN 354
              + V+EG++V L C A+G P P + W     K +      S   S  ++STL  + + 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59

Query: 355 RINMGAYMCLADN 367
             + G Y C A N
Sbjct: 60  PEDSGTYTCAATN 72

Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
           G +VRL+CVA+G+P+P I W   +NKP+T     +S     TL+   +   + G Y C  
Sbjct: 9   GSSVRLKCVASGNPRPDITW-LKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHV 67

Query: 366 DNVPPQI 372
            N   +I
Sbjct: 68  SNRAGEI 74

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
           EG +V L C A G+P P+I W   + KP  L        + STL    ++  + G Y C+
Sbjct: 1   EGQSVTLTCPAEGNPVPNITW-LKDGKP--LPESNRFVASGSTLTIKSVSLEDSGLYTCV 57

Query: 365 ADN 367
           A+N
Sbjct: 58  AEN 60

Length = 63

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLN---FT 351
           + + SP VV EG++V L C A G+P P+  W             KD    SS+ N     
Sbjct: 3   VLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWY------------KDGVPLSSSQNGFFTP 50

Query: 352 RINRINMGAYMCLADN 367
            ++  + G Y C+A N
Sbjct: 51  NVSAEDSGTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 309 VRLRCVATGHPKPSIIWK-----TSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMC 363
           V L C+A+G P P+I W         +    + S + ++  SSTL  + +   + G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 364 LADN 367
           +A N
Sbjct: 61  VASN 64

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
            TL C     P     W      L      +   S    G+      L ISNV + D  T
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSR---GTSSGSSTLTISNVTLEDSGT 57

Query: 447 YRCISKNEVDIAKGSL 462
           Y C++ N       S+
Sbjct: 58  YTCVASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 306 GDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
           G ++R  C A+G+P+P+  W K  +     L S     V +  L  T+++  + G Y C+
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKNGQ----PLASENRIEVEAGDLRITKLSLSDSGMYQCV 69

Query: 365 ADN 367
           A+N
Sbjct: 70  AEN 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P I + +    V  G   TL C  E  P       + +G          SIS    G  
Sbjct: 1   KPVITV-SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNG----------SISGGSGGLG 49

Query: 429 QYIMQLNISNVNISDFDTYRCISKN 453
                L +S+V   D  TY C++ N
Sbjct: 50  SSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 8/156 (5%)

Query: 116 GPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIP 175
            P G   E+ +            +       PP P   PG      P+     P  Q   
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSS 165

Query: 176 GDEGKRGPKGDMGYPGRIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 232
             +       +   P        D       E      P ++  D  PG+   P     P
Sbjct: 166 FLQPSHEDSPEEPEPPT-SEPEPDSPGPPQSETPTSSPPPQSPPDE-PGEPQSPTPQQAP 223

Query: 233 GTNGTNGEKGMTGPRGNRGKSGINGVPGTPAICAYK 268
             N     +    P                   +Y 
Sbjct: 224 SPNTQQAVEHEDEPTEP---EREGPPFPGHRSHSYT 256

Length = 413

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSW---KDSAVASSTLNFTRINRINMGAYM 362
           G +V L C  +G P+  + W   E K +   +     ++ V+S TL  + +   + G Y 
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFK-EGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 363 C 363
           C
Sbjct: 60  C 60

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 369 PPQILIRNRRVGVP--IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           PP I  R   V     +G++ TL C+ + FP     W   DG  IE    KYS ++   G
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWT-KDGEPIESGEEKYSFNE--DG 57

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           S     ++ I +V+  D   Y CI++N+    +  + L
Sbjct: 58  S-----EMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 307 DNVRLRCVATGHPKPSIIWKT------SENKPITLGSWKDSAVASSTLNFTRINRINMGA 360
           + + L C A+G P PSI W+T      SE K +       S    S+L    I   + G 
Sbjct: 18  EQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGE 77

Query: 361 YMCLADN 367
           Y+C A N
Sbjct: 78  YLCTASN 84

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
           EG  V   C A G+P+P I W T     +++   +   ++S TL  +R+   + G Y C 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAW-TKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQ 58

Query: 365 ADNV 368
           A N+
Sbjct: 59  AVNI 62

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPIT----LGSWKDSAVASSTLNFTRINRINMGAY 361
           G  VRL+C A+G+P+P+I W   + KP      +G +K       TL    +   + G Y
Sbjct: 9   GSTVRLKCPASGNPRPTITW-LKDGKPFKKEHRIGGYK-VRKKKWTLILESVVPSDSGKY 66

Query: 362 MCLADN 367
            C+ +N
Sbjct: 67  TCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 19/136 (13%), Positives = 30/136 (22%), Gaps = 1/136 (0%)

Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPK 184
            +  E   +   GEK   G  GP G            P G          P +     P+
Sbjct: 70  ESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129

Query: 185 GDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMT 244
               +            P EP        +             +D          E    
Sbjct: 130 SPASHSPP-PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188

Query: 245 GPRGNRGKSGINGVPG 260
            P   + ++  +  P 
Sbjct: 189 SPGPPQSETPTSSPPP 204

Length = 413

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
           G NV L C A G+P P I W+  +       S  + +++ + L    I   + G Y C A
Sbjct: 16  GQNVTLECFALGNPVPQIKWRKVDGSMP---SSAEISMSGAVLKIPNIQFEDEGTYECEA 72

Query: 366 DNV 368
           +N+
Sbjct: 73  ENI 75

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	902
smart00284	255	OLF Olfactomedin-like domains.	100.0
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	100.0
KOG3545|consensus	249		100.0
KOG3513|consensus	1051		99.86
KOG3513|consensus	1051		99.84
KOG3544|consensus	327		99.82
KOG4194|consensus	873		99.79
KOG4194|consensus	873		99.78
KOG3546|consensus	1167		99.75
KOG4221|consensus	1381		99.72
KOG3546|consensus	1167		99.71
PHA02826	227	IL-1 receptor-like protein; Provisional	99.7
KOG4221|consensus	1381		99.69
KOG4222|consensus	1281		99.67
KOG3544|consensus	327		99.64
KOG4222|consensus	1281		99.64
PHA02785	326	IL-beta-binding protein; Provisional	99.63
PHA02785	326	IL-beta-binding protein; Provisional	99.62
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.48
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.41
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.37
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.37
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.34
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.34
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.32
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.32
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.32
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.31
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.31
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.3
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.3
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.27
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.27
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.27
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.26
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.25
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.25
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.24
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.24
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.24
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.23
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.23
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.22
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.22
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.22
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.21
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.21
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.2
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.19
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.19
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.19
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.18
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.18
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.18
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.17
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.17
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.16
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.15
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.15
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.15
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.14
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.13
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.13
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.12
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.12
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.12
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.1
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.1
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.1
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.09
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.09
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.09
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.08
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.08
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.08
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.08
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.08
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.07
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.07
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.07
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.07
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.06
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.06
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.05
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.05
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.04
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.04
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.03
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.02
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.01
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.01
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.99
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.99
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.99
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.99
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.98
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.98
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.97
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.97
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.97
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.96
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.95
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.95
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.94
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.93
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.93
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.93
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.93
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.92
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.91
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.91
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.91
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.91
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.91
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.91
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.9
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.89
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.89
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.89
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.89
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.88
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.87
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.87
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.87
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.87
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.87
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.84
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.84
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.84
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.84
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.84
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.83
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.83
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.83
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.83
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.82
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.82
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.82
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.82
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.81
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.81
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.8
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.8
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.8
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.8
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.78
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.78
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.77
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.77
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.76
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.76
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.76
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.76
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.76
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.76
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.75
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.75
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.74
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.74
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.73
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.73
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.73
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.73
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.72
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.72
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.72
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.72
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.7
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.7
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.68
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.67
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.67
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.67
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.66
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.66
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.65
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.64
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.63
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.63
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.62
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.62
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.62
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.62
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.61
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.61
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.6
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.6
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.6
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.59
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.59
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.58
KOG3515|consensus	741		98.57
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.57
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.57
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.57
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.55
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.55
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.53
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.52
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.51
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.49
smart00409	86	IG Immunoglobulin.	98.48
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.48
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.48
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.44
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.43
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.42
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.41
PHA02826	227	IL-1 receptor-like protein; Provisional	98.4
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.4
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.38
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.38
PHA03376	221	BARF1; Provisional	98.38
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.37
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.37
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.37
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.35
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.29
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.26
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.25
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.22
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.18
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.17
smart00409	86	IG Immunoglobulin.	98.17
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.17
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.14
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.14
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.13
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.13
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.11
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.07
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.07
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.06
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.01
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.01
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.0
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.0
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.0
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.96
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.95
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.92
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.92
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.91
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.91
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.9
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.9
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.88
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.86
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.86
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.84
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.84
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.83
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.83
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.79
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.77
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.76
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.75
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.75
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.74
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.74
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.71
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.71
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.7
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.69
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.67
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.67
KOG3515|consensus	741		97.67
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.61
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.58
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.57
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.57
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.57
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.57
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.55
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.55
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.52
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.49
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.46
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.45
KOG4729|consensus	265		97.44
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.41
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.41
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.4
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.38
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.38
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.36
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.35
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.35
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.34
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.34
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.33
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.31
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.3
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.28
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.28
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.23
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.19
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.18
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.17
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.16
smart00407	75	IGc1 Immunoglobulin C-Type.	97.16
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.15
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.1
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.08
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.08
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.06
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.06
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.02
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.01
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.97
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.96
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.92
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.9
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	96.85
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.84
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.81
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.77
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.77
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.73
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.7
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.69
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.67
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.66
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.66
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.63
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.59
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.59
PHA03376	221	BARF1; Provisional	96.57
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	96.56
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.53
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.53
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.49
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.47
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.44
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.42
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	96.41
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.37
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.34
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.31
KOG1480|consensus	909		96.28
smart00406	81	IGv Immunoglobulin V-Type.	96.25
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.25
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.23
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.21
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.03
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	95.95
KOG1924|consensus	1102		95.73
smart00406	81	IGv Immunoglobulin V-Type.	95.71
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.71
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.5
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.36
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.34
KOG1924|consensus	1102		95.31
smart00407	75	IGc1 Immunoglobulin C-Type.	95.3
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	95.24
PHA02633	63	hypothetical protein; Provisional	95.1
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	94.89
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	94.87
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.74
cd05770	93	IgC_beta2m Class I major histocompatibility comple	94.63
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	94.17
KOG3545|consensus	249		94.16
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.07
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	93.82
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	93.74
KOG4597|consensus	560		93.67
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.33
PHA03270	466	envelope glycoprotein C; Provisional	93.17
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	93.08
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	92.81
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	92.74
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	92.65
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.64
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	92.32
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	92.3
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	92.06
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	91.36
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	91.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.65
smart00284	255	OLF Olfactomedin-like domains.	90.63
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	90.39
PHA02982	251	hypothetical protein; Provisional	90.02
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	89.16
PHA03269	566	envelope glycoprotein C; Provisional	88.92
KOG1480|consensus	909		88.77
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	88.75
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	88.65
PHA03273	486	envelope glycoprotein C; Provisional	88.3
PHA02633	63	hypothetical protein; Provisional	88.29
PHA02914	500	Immunoglobulin-like domain protein; Provisional	88.22
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	88.2
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	88.19
PLN02153	341	epithiospecifier protein	87.23
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	87.06
PHA03270	466	envelope glycoprotein C; Provisional	86.95
PHA03269	566	envelope glycoprotein C; Provisional	86.14
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	85.55
PHA03042	286	CD47-like protein; Provisional	85.4
PHA02982	251	hypothetical protein; Provisional	85.28
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	85.12
KOG0613|consensus	1205		84.88
PHA03271	490	envelope glycoprotein C; Provisional	84.82
PHA02914	500	Immunoglobulin-like domain protein; Provisional	83.89
PHA03098	534	kelch-like protein; Provisional	83.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	83.61
PHA03271	490	envelope glycoprotein C; Provisional	82.07
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	81.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	81.06
PHA03273	486	envelope glycoprotein C; Provisional	80.24

>smart00284 OLF Olfactomedin-like domains

Probab=100.00  E-value=9.3e-79  Score=636.56  Aligned_cols=247  Identities=29%  Similarity=0.517  Sum_probs=229.9

Q ss_pred             eeeecCCceEeeccCccccCCCcceeeeccceecCCCCCCCCCceEEEecCC--CCCceEeecChhhhcccCCcceEeCc
Q psy12803        552 QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDS--DPTHLNEYKDKDMFKSDAKSWTYNLK  629 (902)
Q Consensus       552 ~l~~v~~Pv~~~~~~~~~~~~~~~~~~~~G~W~~D~~~~~~~~~~~~~~~~~--~~~~~~ey~~~~~~~~~~~~~~~~l~  629 (902)
                      .|.+|++|++|+.+.          .+++|+|||||.+.+...+++||++++  .+++|+||+++++|++++..++|.||
T Consensus         2 ~L~~V~~P~~~~~~~----------~~~~GaWmkD~~~~~~~~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp   71 (255)
T smart00284        2 GLAGISKPVTLQTSW----------KGKSGAWMKDPLWNTTKKSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLP   71 (255)
T ss_pred             CceEecCCeEEEecC----------CCccceeecCCCCCCCCCceEEEEccccCCCcEEEEecCHHHHhccCCceEEECC
Confidence            488999999999876          258999999999855447999999875  68899999999999999999999999


Q ss_pred             CCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCC-CCCccccc-CCcccEEEEecCCccEEEEEcC--CC
Q psy12803        630 EPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV-DPNIKLYK-TGYNVMDFSLDENGLWVIYGLS--NN  705 (902)
Q Consensus       630 ~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~-~~~~~~y~-~~~~~iD~avDE~GLWviY~~~--~~  705 (902)
                      ++|+|||||||||+||||+++|++||||||+++++.+++.|+.+ ..+..+|. +++|||||||||+|||||||++  ++
T Consensus        72 ~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g  151 (255)
T smart00284       72 HAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG  151 (255)
T ss_pred             CccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence            99999999999999999999999999999999999999988843 23334554 7999999999999999999996  58


Q ss_pred             cEEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeec
Q psy12803        706 NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITY  785 (902)
Q Consensus       706 ~ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Y  785 (902)
                      +||||||||.||+||+||+|+++|++|+||||||||||||+|...++++|+|||||+|++++.++|+|+|+|++++||+|
T Consensus       152 ~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~Y  231 (255)
T smart00284      152 KIVISKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDY  231 (255)
T ss_pred             CEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceecee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEeCCeEEEEEeEEe
Q psy12803        786 NSRYKDLYTWDRGNSLTYPIRYH  808 (902)
Q Consensus       786 nP~d~~LY~wd~g~~~~Y~v~f~  808 (902)
                      ||+||+||+|||||||+|+|+|.
T Consensus       232 NP~d~~LY~wdng~~l~Y~v~f~  254 (255)
T smart00284      232 NPNDRKLYAWNNGHLVHYDIALK  254 (255)
T ss_pred             CCCCCeEEEEeCCeEEEEEEEec
Confidence            99999999999999999999995

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=100.00  E-value=2e-76  Score=626.67  Aligned_cols=244  Identities=41%  Similarity=0.777  Sum_probs=231.7

Q ss_pred             eeeecCCceEeeccCccccCCCcceeeeccceecCCCCCCCCCceEEEecCCCCCceEeecChhhh-cccCCcceEeCcC
Q psy12803        552 QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMF-KSDAKSWTYNLKE  630 (902)
Q Consensus       552 ~l~~v~~Pv~~~~~~~~~~~~~~~~~~~~G~W~~D~~~~~~~~~~~~~~~~~~~~~~~ey~~~~~~-~~~~~~~~~~l~~  630 (902)
                      +|.+|++|++++.+.           .++|||||||.  ..+.+++|++.++.+++|+||+++++| ++++..+.+.||+
T Consensus         1 tl~~I~~P~~~~~~~-----------~~~GaWmrD~~--~~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~   67 (250)
T PF02191_consen    1 TLASISKPVTVKKSG-----------YKFGAWMRDPS--PSDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPY   67 (250)
T ss_pred             CcccCcCCEEEeeec-----------cceeEEEeCCC--CCCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEec
Confidence            478999999999888           89999999998  357889999999999999999999999 8999999999999


Q ss_pred             CCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCC--CcccccCCcccEEEEecCCccEEEEEcC--CCc
Q psy12803        631 PFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDP--NIKLYKTGYNVMDFSLDENGLWVIYGLS--NNN  706 (902)
Q Consensus       631 ~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~--~~~~y~~~~~~iD~avDE~GLWviY~~~--~~~  706 (902)
                      +|+|||||||||+||||+++|++||||||+++++++++.|+.+..  ..+++.++++||||||||+||||||++.  +++
T Consensus        68 ~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~  147 (250)
T PF02191_consen   68 PWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN  147 (250)
T ss_pred             eeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence            999999999999999999999999999999999999999985543  3566669999999999999999999997  568


Q ss_pred             EEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecC
Q psy12803        707 TAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYN  786 (902)
Q Consensus       707 ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Yn  786 (902)
                      ||||||||++|+||+||+|+++|++|+||||||||||||++.++++++|+|||||++++++.++|+|+|+|+.++||+||
T Consensus       148 ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YN  227 (250)
T PF02191_consen  148 IVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYN  227 (250)
T ss_pred             EEEEeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCeEEEEEeEEe
Q psy12803        787 SRYKDLYTWDRGNSLTYPIRYH  808 (902)
Q Consensus       787 P~d~~LY~wd~g~~~~Y~v~f~  808 (902)
                      |+||+||+|||||||+|+|+|+
T Consensus       228 P~dk~LY~wd~G~~v~Y~v~f~  249 (250)
T PF02191_consen  228 PRDKKLYAWDNGYQVTYDVRFK  249 (250)
T ss_pred             CCCCeEEEEECCeEEEEEEEec
Confidence            9999999999999999999996

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG3545|consensus

Probab=100.00  E-value=1e-74  Score=592.03  Aligned_cols=245  Identities=38%  Similarity=0.710  Sum_probs=233.2

Q ss_pred             ceeeecCCceEeeccCccccCCCcceeeeccceecCCCCCCCCCceEEEecCCCCCceEeecChhhhcccCCcceEeCcC
Q psy12803        551 CQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKE  630 (902)
Q Consensus       551 C~l~~v~~Pv~~~~~~~~~~~~~~~~~~~~G~W~~D~~~~~~~~~~~~~~~~~~~~~~~ey~~~~~~~~~~~~~~~~l~~  630 (902)
                      |.+.+|++|+.++...           ..+|+|||||.+   ..+++|++.+++++.|.||+++++|+++++.++|+||+
T Consensus         1 ~~l~~v~~p~~~~~~~-----------~~~GsWmrDpl~---~~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~   66 (249)
T KOG3545|consen    1 GKLYAVGGPVTVKTAG-----------PRFGAWMRDPLP---ADDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRLPY   66 (249)
T ss_pred             CeeEEeccceEEEeec-----------cccceeecCCCc---ccCceEEeccccCceEEEeccHHHhhccCcceEEeCCC
Confidence            5688999999999888           889999999997   58899999999999999999999999999999999999


Q ss_pred             CCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCC--CCCcccccCCcccEEEEecCCccEEEEEcC--CCc
Q psy12803        631 PFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWVIYGLS--NNN  706 (902)
Q Consensus       631 ~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~--~~~~~~y~~~~~~iD~avDE~GLWviY~~~--~~~  706 (902)
                      .|.||||||||||||||+++|+.||||||+++.+..+..+|.+  .+.+++|+++++||||||||+|||||||+.  +++
T Consensus        67 ~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~  146 (249)
T KOG3545|consen   67 SWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT  146 (249)
T ss_pred             CccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc
Confidence            9999999999999999999999999999999999999989844  344567779999999999999999999997  678


Q ss_pred             EEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecC
Q psy12803        707 TAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYN  786 (902)
Q Consensus       707 ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Yn  786 (902)
                      ||||||||.+|++|++|+|+++|++++||||||||||+|+|.+..++.|+|||||++++++.++|+|+|+|++++||+||
T Consensus       147 iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYN  226 (249)
T KOG3545|consen  147 IVLSKLDPETLEVERTWNTTLPKRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYN  226 (249)
T ss_pred             EEeeccCHHHhheeeeeccccCCCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCeEEEEEeEEee
Q psy12803        787 SRYKDLYTWDRGNSLTYPIRYHE  809 (902)
Q Consensus       787 P~d~~LY~wd~g~~~~Y~v~f~~  809 (902)
                      |+|++||+|||||||+|+|+|.+
T Consensus       227 P~D~~LY~wdng~~l~y~l~~~~  249 (249)
T KOG3545|consen  227 PRDRRLYAWDNGHQLTYNLTFFE  249 (249)
T ss_pred             cccceeeEecCCcEEEEEeEecC
Confidence            99999999999999999999963

>KOG3513|consensus

Probab=99.86  E-value=1e-21  Score=235.57  Aligned_cols=196  Identities=24%  Similarity=0.373  Sum_probs=160.1

Q ss_pred             ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee
Q psy12803        263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA  342 (902)
Q Consensus       263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~  342 (902)
                      -.|.+.|..+... ....+.+..+|.+..     .++++++..|++++|.|.|.|.|.|+|+|+|++..+..........
T Consensus       309 Y~C~AeN~~G~~~-~~~~v~v~a~P~w~~-----~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~  382 (1051)
T KOG3513|consen  309 YECIAENSRGSAT-HSGHVTVYAPPYWLQ-----KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYK  382 (1051)
T ss_pred             EEEEEecccccce-eeEEEEEecCchhhc-----ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceE
Confidence            4688888887433 333556666776643     5577889999999999999999999999999988877666555677


Q ss_pred             ccCCcEEEEeeeeecCceeEEeecC---------------CCCEEEEcCce--eeeecCceEEEEEEeeccCCceEEEEe
Q psy12803        343 VASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRR--VGVPIGRTATLECEVEAFPLSVRYWEF  405 (902)
Q Consensus       343 ~~~~sL~I~~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~--~~v~~G~~v~L~C~a~g~P~P~v~W~k  405 (902)
                      ...++|+|++|+.+|+|.|+|.|+|               .+|.|...+..  +.+..|.++.|.|.+.+.|.|.+.|.+
T Consensus       383 i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k  462 (1051)
T KOG3513|consen  383 IDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK  462 (1051)
T ss_pred             EeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc
Confidence            7889999999999999999999999               45666665544  467889999999999999999999988


Q ss_pred             cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCC
Q psy12803        406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVP  474 (902)
Q Consensus       406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~  474 (902)
                      .+..+  .++.++.+..  +++      |.|.+++.+|+|.|+|+|.|.+|.++....|.|.+++.+..
T Consensus       463 ~~~~~--~~~~r~~i~e--dGt------L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~  521 (1051)
T KOG3513|consen  463 GGEKL--LQSGRIRILE--DGT------LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL  521 (1051)
T ss_pred             CCccc--ccCceEEECC--CCc------EEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe
Confidence            77733  3455666544  333      99999999999999999999999999999999998876543

>KOG3513|consensus

Probab=99.84  E-value=4.2e-20  Score=221.87  Aligned_cols=198  Identities=25%  Similarity=0.393  Sum_probs=154.4

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----------  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----------  367 (902)
                      ++++...+|+.|.|.|.|.|+|.|+|.|+|.++..+.  +.........+|.|.+++.+|+|.|+|.|+|          
T Consensus       248 p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~--~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~  325 (1051)
T KOG3513|consen  248 PETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP--RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGH  325 (1051)
T ss_pred             CCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC--cceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEE
Confidence            4467788999999999999999999999999987443  2223344566999999999999999999999          


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC-ceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG-VKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                          .+|.++..+++..+..|+++.|.|.+.|.|.|+++|++++.++...+. .++.+..   +      +|+|.+|+.+
T Consensus       326 v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~---g------~L~is~v~~~  396 (1051)
T KOG3513|consen  326 VTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD---G------TLIISNVQES  396 (1051)
T ss_pred             EEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC---C------EEEEEecccc
Confidence                789999999999999999999999999999999999999988764333 2233332   2      3999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEeecCCCCCCC-CCCcceEEEEeCCCCCCccccCCCCcccCCC
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFESNAKTPVPT-EKEQEEVTVYNRAPKPEGQDDLCPPQVLCPP  506 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~-~~~~~~v~~~~~~~~~~~~~~~C~~~~v~~~  506 (902)
                      |+|.|.|.|+|..|...+++.|.|....+..+. .......+..+......|....-+-+.+-|.
T Consensus       397 dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~  461 (1051)
T KOG3513|consen  397 DSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL  461 (1051)
T ss_pred             cCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence            999999999999999999999999987444322 3333334555555666644444333444444

>KOG3544|consensus

Probab=99.82  E-value=1.9e-19  Score=201.26  Aligned_cols=98  Identities=16%  Similarity=0.065  Sum_probs=61.0

Q ss_pred             cccccccccCCCCCCceEeeCchhHHHHHHHhhhhhcccCCCcceeecccCCC-------chhh--------------cc
Q psy12803         42 KDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHNNPWVWLNAYSRI-------PLVA--------------MQ  100 (902)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~w~~l~~~~~~-------~~~~--------------~~  100 (902)
                      .+.+.++.+..+....+.|...+........++.+|+..++++|..|..+...       ....              ..
T Consensus        20 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   99 (327)
T KOG3544|consen   20 GTPSAPAVLGPLLGVPGLYGYVGSVGSPLPPGLGFFGERGDPGWPGPTGPPGLPGVTGPKGEKGYPGGPLGPRGEPGPPG   99 (327)
T ss_pred             ccccccccccceecccccccCCCCcCCcCCCcccccccccccccccccccccccCCCCCCCcCCCCCCCCCcCCCCCCCC
Confidence            44455555555546666666665555555777899999999999887654211       0000              02


Q ss_pred             cccCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12803        101 GFCNS--TKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEK  139 (902)
Q Consensus       101 ~~c~~--~~~~c~~g~~G~~G~~G~~G~~G~~G~~G~~G~~  139 (902)
                      +.|..  ....|++|++|++|.+|.+|.+|.+|..|..|.+
T Consensus       100 ~~~~~~~~~~~cp~GppGp~G~pG~~G~pG~~g~~G~~G~p  140 (327)
T KOG3544|consen  100 CQGPPGEQGEKCPPGPPGPPGPPGPPGPPGVPGAPGLPGEP  140 (327)
T ss_pred             CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            45554  5667898888888888777777766444444433

>KOG4194|consensus

Probab=99.79  E-value=7.5e-19  Score=196.76  Aligned_cols=210  Identities=18%  Similarity=0.243  Sum_probs=154.5

Q ss_pred             cccCCceeecCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCcccccCCcc----cee----------ccCCcEEEE
Q psy12803        288 TIVGSEHIFSSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENKPITLGSWK----DSA----------VASSTLNFT  351 (902)
Q Consensus       288 ~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~~~~~~~~~----~~~----------~~~~sL~I~  351 (902)
                      .+..+..+..|.++.+..|++++|+|.|.+  ..+.++.|.+++..........    ..+          .-.+.|.+.
T Consensus       500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~  579 (873)
T KOG4194|consen  500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD  579 (873)
T ss_pred             CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence            344556666778888889999999999887  4566899999765322111000    000          012469999


Q ss_pred             eeeeecCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCe-eeecCC
Q psy12803        352 RINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT-LIEHDG  415 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~-l~~~~~  415 (902)
                      +|+..|+|.|+|++.|               ..|.|+..|.+..+..|+.+.|.|.++|.|.|+|.|.|+++. ++....
T Consensus       580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e  659 (873)
T KOG4194|consen  580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE  659 (873)
T ss_pred             eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence            9999999999999999               689999999999999999999999999999999999998887 444444


Q ss_pred             ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCCCCCCcceEEEEeCCCCCCccc
Q psy12803        416 VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQD  495 (902)
Q Consensus       416 ~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~~~~~~~v~~~~~~~~~~~~~  495 (902)
                      ++..+.... ..      +.|.+|+.+|+|.|+|.|.|.+|..++.+.|.|.+.|....  +.....+.++....+.|..
T Consensus       660 RRl~Vmped-d~------f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~--PL~~~~V~~get~vlqC~a  730 (873)
T KOG4194|consen  660 RRLHVMPED-DV------FFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSI--PLEDQLVVVGETLVLQCLA  730 (873)
T ss_pred             heeeecCCC-CE------EEEecccccccceeEEeeeccccceeeceEEEEecCCcccc--cccceEEEecceEEEEEec
Confidence            444443333 22      88999999999999999999999999999999998765422  2333444555555666444


Q ss_pred             cCCCC-cccCCC
Q psy12803        496 DLCPP-QVLCPP  506 (902)
Q Consensus       496 ~~C~~-~~v~~~  506 (902)
                      +.-++ +..-|.
T Consensus       731 ~~~~a~pr~~W~  742 (873)
T KOG4194|consen  731 EGAPADPRLEWF  742 (873)
T ss_pred             CCCCCCcccccc
Confidence            44333 334444

>KOG4194|consensus

Probab=99.78  E-value=1.3e-18  Score=195.00  Aligned_cols=195  Identities=21%  Similarity=0.336  Sum_probs=163.1

Q ss_pred             ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-
Q psy12803        263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-  341 (902)
Q Consensus       263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-  341 (902)
                      -.|...|.+++..+....+++.+.|.|.     ..|.++++..|+.+.|.|.|+|.|.|+|.|.|+++.-.+....++. 
T Consensus       589 YQCVvtN~FGStysqk~KltV~~~PsFt-----ktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~  663 (873)
T KOG4194|consen  589 YQCVVTNHFGSTYSQKAKLTVNQAPSFT-----KTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLH  663 (873)
T ss_pred             EEEEEecccCcchhheeEEEeeccCccc-----cCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheee
Confidence            5799999999999999999999999884     3567899999999999999999999999999998875554443332 


Q ss_pred             -eccCCcEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEe
Q psy12803        342 -AVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEF  405 (902)
Q Consensus       342 -~~~~~sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k  405 (902)
                       .-++..+.|.||+.+|+|.|+|.|.|              ..|.+.++..++.|..|+++.|.|.+.+.|. |.+.|+|
T Consensus       664 Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k  743 (873)
T KOG4194|consen  664 VMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFK  743 (873)
T ss_pred             ecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccC
Confidence             23566899999999999999999999              5677777788899999999999999999998 9999999


Q ss_pred             cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .++++.......+.   ..+-      .|++.++..+|+|.|+|...|..|.....+.+.|...+.
T Consensus       744 ~d~pil~t~rh~f~---d~dQ------llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  744 EDKPILITERHTFP---DGDQ------LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK  800 (873)
T ss_pred             CCCceEEeecccCC---CCCe------EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence            99988765544332   1221      289999999999999999999999988888777765443

>KOG3546|consensus

Probab=99.75  E-value=3e-17  Score=182.87  Aligned_cols=37  Identities=32%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCC
Q psy12803        241 KGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPN  277 (902)
Q Consensus       241 ~G~~G~~G~~G~~g~~g~~G~pg~c~~kN~scs~~s~  277 (902)
                      .|-+|++|+.|..|.+|.+|.+|...-|.+-+++.+.
T Consensus       639 ~gfpgp~gpkg~~g~~g~~g~~g~~gekgepg~i~s~  675 (1167)
T KOG3546|consen  639 AGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSP  675 (1167)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccCC
Confidence            3444444455555555555555555555555555544

>KOG4221|consensus

Probab=99.72  E-value=8.9e-17  Score=192.12  Aligned_cols=194  Identities=20%  Similarity=0.269  Sum_probs=148.5

Q ss_pred             cccccccc-ccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce
Q psy12803        263 AICAYKRE-SCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS  341 (902)
Q Consensus       263 g~c~~kN~-scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~  341 (902)
                      -.|.+... .+++.+....+.+.-.+.+     ...+.+.++..|+++.|.|.+.+.|.|.+.|.|++..+ .... +..
T Consensus       116 Yqc~atv~~~gsi~Sr~a~v~~a~~~~f-----~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl-~~~~-r~i  188 (1381)
T KOG4221|consen  116 YQCLATVEDVGSILSRTAKVALAGLADF-----ALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPL-PLDS-RVI  188 (1381)
T ss_pred             EEEEEEccccceeecceEEEEecccCcc-----ccCccceeEecCCcEEEEEEEcCccCceeEEecccccc-cCCC-cEE
Confidence            34555444 5666665544333333333     22345688999999999999999999999999977644 3333 778


Q ss_pred             eccCCcEEEEeeeeecCceeEEeecC---------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCce
Q psy12803        342 AVASSTLNFTRINRINMGAYMCLADN---------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV  400 (902)
Q Consensus       342 ~~~~~sL~I~~Vt~~DsG~YtC~A~N---------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~  400 (902)
                      ...++.|.|.+++..|.|.|.|.+.+                     ....|...+.+..+.+|+++.|+|.+.+.|.|.
T Consensus       189 ~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~  268 (1381)
T KOG4221|consen  189 VLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS  268 (1381)
T ss_pred             EcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc
Confidence            88999999999999999999999998                     233456677788899999999999999999999


Q ss_pred             EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       401 v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |.|.+++..+.. ++.++.+...  .      .|.|.+++..|+|.|+|+|.|......+++.|.|..+|..
T Consensus       269 v~Wlrng~~i~~-ds~rivl~g~--~------slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~  331 (1381)
T KOG4221|consen  269 VKWLRNGEKISV-DSYRIVLVGG--S------SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGF  331 (1381)
T ss_pred             eEEeeCCeeeee-cceEEEEecc--c------ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCC
Confidence            999987766644 4444444322  2      2999999999999999999997777777888888877654

>KOG3546|consensus

Probab=99.71  E-value=1.5e-16  Score=177.39  Aligned_cols=38  Identities=29%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             eEEEEec--cccccccceEEEecEEEEEeecCCCcceEEEEEeCCC
Q psy12803        720 QYTWNIT--LLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYK  763 (902)
Q Consensus       720 ~~tw~t~--~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~  763 (902)
                      +-.|+-+  +.-+.|+|   +|+-...|+|   ..+...|+|||-+
T Consensus      1101 klvwhgsSplgirlags---ycegwrtvss---ggtgfasaldlgs 1140 (1167)
T KOG3546|consen 1101 KLVWHGSSPLGIRLAGS---YCEGWRTVSS---GGTGFASALDLGS 1140 (1167)
T ss_pred             hheecCCCccchhhhhc---cccceeEecC---Ccccccccccccc
Confidence            3345544  23334444   5777777766   3446777777754

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.70  E-value=1.1e-16  Score=168.91  Aligned_cols=148  Identities=16%  Similarity=0.272  Sum_probs=105.2

Q ss_pred             CcEEEEcCCeEEEEEecCCCC-----------CCceEEecCCCcccccC--C--------ccceeccCCcEEEEeeeeec
Q psy12803        299 SPIVVREGDNVRLRCVATGHP-----------KPSIIWKTSENKPITLG--S--------WKDSAVASSTLNFTRINRIN  357 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P-----------~p~v~W~k~~~~~~~~~--~--------~~~~~~~~~sL~I~~Vt~~D  357 (902)
                      ..+.+.+|++|.|.|.+.+.|           .+.|.|+|.+.......  .        .......+++|+|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            347789999999999987754           45899999764321110  0        01111235689999999999


Q ss_pred             CceeEEeecCC--------CCEEEEcCceeeeecCceEEEEEEee-----ccCCceEEEEecCCeeeecCCceEEEeecC
Q psy12803        358 MGAYMCLADNV--------PPQILIRNRRVGVPIGRTATLECEVE-----AFPLSVRYWEFIDGTLIEHDGVKYSISDVD  424 (902)
Q Consensus       358 sG~YtC~A~N~--------~P~i~~~p~~~~v~~G~~v~L~C~a~-----g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~  424 (902)
                      +|.|+|.|.|.        ...+.....+..+.+|++++|+|.+.     +.|.|+++|++++..+....  ++.+.. .
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~--r~~~~~-~  186 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD--RIQLRN-N  186 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC--CEEEeC-C
Confidence            99999999991        11222233445678899999999986     34679999999887765322  333322 1


Q ss_pred             CCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        425 KGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       425 ~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .      .+|.|.+|+.+|+|.|+|+|+...
T Consensus       187 ~------~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        187 N------STLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             C------CEEEECcCCHHhCEEEEEEEEEeE
Confidence            1      249999999999999999998865

>KOG4221|consensus

Probab=99.69  E-value=4.3e-17  Score=194.77  Aligned_cols=167  Identities=27%  Similarity=0.413  Sum_probs=141.5

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      ++..+.+.++.+|++|.|.|.+.+.|.|+|.|.|++..+. ..+.+......++|.|++++.+|+|.|+|+|.|      
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~-~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~id  318 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKIS-VDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSID  318 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeee-ecceEEEEecccceEEeccccccCceEEEEecCCCcccc
Confidence            4567888999999999999999999999999999665544 444566666778999999999999999999998      


Q ss_pred             --------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        368 --------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       368 --------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                              .+|.|+..+.+....++.+++|.|.+.+.|.|.+.|+|++..+...+  .+++....  .      |.|.-+
T Consensus       319 asaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsd--y~ki~~~~--~------lrIlgi  388 (1381)
T KOG4221|consen  319 ASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSD--YFKIVGGG--N------LRILGI  388 (1381)
T ss_pred             cceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCccc--ceEecCCC--C------cEEEEE
Confidence                    67888888999999999999999999999999999999998887633  33333322  2      888888


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        440 NISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      -..|.|.|.|+++|.+|.+...+.|.|...+.
T Consensus       389 ~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~  420 (1381)
T KOG4221|consen  389 VKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA  420 (1381)
T ss_pred             ecccchhhhhhhccCcccccchhhheeccCCc
Confidence            89999999999999999999999887765533

>KOG4222|consensus

Probab=99.67  E-value=1.5e-16  Score=189.37  Aligned_cols=229  Identities=19%  Similarity=0.264  Sum_probs=174.9

Q ss_pred             ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccce
Q psy12803        263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDS  341 (902)
Q Consensus       263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~  341 (902)
                      -.|.++|.++.+.+....+.+.+...-    +-..+..+.+..|+.++|.|.- .+.|.|.|.|.|++..+.......+.
T Consensus       107 y~cvasn~~g~avSr~a~L~vavlrdd----frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~  182 (1281)
T KOG4222|consen  107 YSCVASNRLGEAVSRGASLIVAVLRDD----FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA  182 (1281)
T ss_pred             eEeeecCccceeeecCceEEEEEechh----cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence            458888888887777766666665433    2234566888999999999984 57999999999998887644445566


Q ss_pred             eccCCcEEEEeeeeecCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEec
Q psy12803        342 AVASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI  406 (902)
Q Consensus       342 ~~~~~sL~I~~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~  406 (902)
                      ....+.|.|.+|..+|+|+|.|++.|               .+|.|...+.++.+.+|..+.|.|.+.|.|.|++.|.+.
T Consensus       183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~  262 (1281)
T KOG4222|consen  183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD  262 (1281)
T ss_pred             EecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeecc
Confidence            67889999999999999999999999               688888899999999999999999999999999999886


Q ss_pred             CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCCCCCCcceEEEEe
Q psy12803        407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYN  486 (902)
Q Consensus       407 ~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~~~~~~~v~~~~  486 (902)
                      +..+.   ..++.+.... .      +|.|.+++..|.|.|.|.|.|.+|..+++..|+|..++.......  ...+..+
T Consensus       263 ~~~~P---~~ry~i~~d~-q------tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~--dq~v~lg  330 (1281)
T KOG4222|consen  263 DPSLP---RSRYSILDDT-Q------TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPR--DQKVALG  330 (1281)
T ss_pred             CCCCC---ccceeeeecc-c------cccccccCCCcccceeeeccccccccccccceEEecCcccccccC--ccccccC
Confidence            66553   2333433221 1      399999999999999999999999999999999998776532222  2223333


Q ss_pred             CCCCCCccccCCCCcccCCCC
Q psy12803        487 RAPKPEGQDDLCPPQVLCPPC  507 (902)
Q Consensus       487 ~~~~~~~~~~~C~~~~v~~~c  507 (902)
                      ....+.|....-+++.+.|..
T Consensus       331 ~~vt~pc~~~gnP~PavfW~k  351 (1281)
T KOG4222|consen  331 GTVTFPCETLGNPPPAVFWLK  351 (1281)
T ss_pred             ceEEeeeecCCCCCcceEEec
Confidence            334455555555555555553

>KOG3544|consensus

Probab=99.64  E-value=4.4e-15  Score=166.15  Aligned_cols=22  Identities=45%  Similarity=0.835  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q psy12803        110 CPPGLQGPIGQKGEIGAKGEMG  131 (902)
Q Consensus       110 c~~g~~G~~G~~G~~G~~G~~G  131 (902)
                      .++|++|.+|.+|.+|.+|..|
T Consensus       114 GppGp~G~pG~~G~pG~~g~~G  135 (327)
T KOG3544|consen  114 GPPGPPGPPGPPGPPGVPGAPG  135 (327)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Confidence            6667766666666666663333

>KOG4222|consensus

Probab=99.64  E-value=2.6e-15  Score=178.85  Aligned_cols=205  Identities=22%  Similarity=0.268  Sum_probs=147.5

Q ss_pred             ceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc-CCccceeccCCcEEEEeee-----eecCceeEEeec
Q psy12803        293 EHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL-GSWKDSAVASSTLNFTRIN-----RINMGAYMCLAD  366 (902)
Q Consensus       293 ~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~-~~~~~~~~~~~sL~I~~Vt-----~~DsG~YtC~A~  366 (902)
                      .++..+.++.+..|+.++|.|.++|.|.|+|+|+|++..+... ....++...+++|.+..+.     ..|.|.|+|+|+
T Consensus        33 ~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvas  112 (1281)
T KOG4222|consen   33 RIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVAS  112 (1281)
T ss_pred             ceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeec
Confidence            3455667788999999999999999999999999988654432 2344566677777776552     349999999999


Q ss_pred             C----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCcee
Q psy12803        367 N----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ  429 (902)
Q Consensus       367 N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~  429 (902)
                      |                -.-.|.+.+.++.+..|+.+.|+|.- .+.|.|.+.|.|++..+.......+.+...++    
T Consensus       113 n~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~----  188 (1281)
T KOG4222|consen  113 NRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN----  188 (1281)
T ss_pred             CccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc----
Confidence            9                23344556677888899999999965 68899999998888877633333333333322    


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEEeecCCCCCCCCCCcceEEEEeCCCCCCccccCCCCcccCCCC
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPC  507 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~C~~~~v~~~c  507 (902)
                          |.|.+|..+|+|.|.|+|.|.+|.. +..++|.|.+++.-.  ......++.++......|.+..-+.+.+.|.|
T Consensus       189 ----LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~--~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk  261 (1281)
T KOG4222|consen  189 ----LLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW--KRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK  261 (1281)
T ss_pred             ----EEEeccccCCCceeeeeecccccccccccceeeeccCCccc--cccccceeecccccccccccCCCCCCceeeec
Confidence                9999999999999999999999986 567788888776542  22223334444445555444444445555555

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.63  E-value=5.5e-15  Score=164.99  Aligned_cols=154  Identities=20%  Similarity=0.348  Sum_probs=108.7

Q ss_pred             cEEEEcCCeEEEEEe-----cCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803        300 PIVVREGDNVRLRCV-----ATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~-----a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------  367 (902)
                      +..+.+|+.+.|.|.     ..+.|.+.|+|+++. .+   ...+.....++.|.|.+|+.+|+|.|+|.|.|       
T Consensus       130 ~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~---~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~  205 (326)
T PHA02785        130 PQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL---RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY  205 (326)
T ss_pred             cceecccCcEEEECCChhhcccCCCCceEEEccCC-cc---CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence            355779999999997     246789999998853 21   22233344567899999999999999999998       


Q ss_pred             --------------CCCEEEEcCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeeeecC---CceEEEeecC---
Q psy12803        368 --------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLIEHD---GVKYSISDVD---  424 (902)
Q Consensus       368 --------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~~~~---~~~~~~~~~~---  424 (902)
                                    .+|.+ ..+..+.+..|++++|.|.+.+.|.   +.+.|++++..+...+   ..++......   
T Consensus       206 ~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~  284 (326)
T PHA02785        206 NVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTT  284 (326)
T ss_pred             eEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccc
Confidence                          01222 2345566778999999999999886   4899999876653221   1122221111   


Q ss_pred             CCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       425 ~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      .......+.|+|.+|+.+|+|.|+|+|.|..+..
T Consensus       285 ~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        285 DKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             ccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            1111235679999999999999999999988543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.62  E-value=4.3e-15  Score=165.79  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=106.0

Q ss_pred             EEEEcCCeEEEEEec-----CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC-------
Q psy12803        301 IVVREGDNVRLRCVA-----TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV-------  368 (902)
Q Consensus       301 v~v~eGe~v~L~C~a-----~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~-------  368 (902)
                      ..+.+|+.+.|.|.+     .|.|.++++|+|++...    ........+..|.|.++..+|+|.|+|+|.|.       
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~----~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s  111 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADN----DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS  111 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc----ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence            346689999999997     68899999999986431    11122223345899999999999999999991       


Q ss_pred             ---------CCEEEEcCceeeeecCceEEEEEE-----eeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        369 ---------PPQILIRNRRVGVPIGRTATLECE-----VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       369 ---------~P~i~~~p~~~~v~~G~~v~L~C~-----a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                               ++.+...+..+.+.+|..+.|.|.     ..+.|.+.|+|+++. .+   ...++..  ...      +.|
T Consensus       112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~---~~~r~~~--~~~------~~L  179 (326)
T PHA02785        112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL---RNKRLKQ--RTP------GII  179 (326)
T ss_pred             EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-cc---CCcceEe--cCC------CeE
Confidence                     111111223355778999999996     346788999997643 22   1222222  111      249


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeE----EEEEEEeec
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAK----GSLILFESN  468 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~----~s~~L~V~~  468 (902)
                      .|.+|+.+|+|.|+|.|.|..|...    ..+.|.|..
T Consensus       180 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~  217 (326)
T PHA02785        180 TIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD  217 (326)
T ss_pred             EEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec
Confidence            9999999999999999999988654    344566654

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.48  E-value=2.3e-13  Score=125.03  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=81.2

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      |.|...+.++.+..|+.+.|.|.+.|.|.|++.|++++..+...  .++.+.....     .+.|.|.++..+|+|.|+|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~--~~~~~~~~~~-----~s~L~I~~~~~~D~G~Ytc   73 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG--EGIKIENTEN-----SSKLTITEGQQEHCGCYTL   73 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC--CcEEEEecCC-----eeEEEECCCChhhCEEEEE
Confidence            56788889999999999999999999999999999988776432  3344333222     3469999999999999999


Q ss_pred             EEEeCCceeEEEEEEEeecCCCCC
Q psy12803        450 ISKNEVDIAKGSLILFESNAKTPV  473 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V~~~p~~~  473 (902)
                      .|.|.+|...+++.|.|.+.|.++
T Consensus        74 ~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          74 EVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EEEcCCCceeEEEEEEEecCCCCC
Confidence            999999999999999999887653

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.41  E-value=1.4e-12  Score=117.41  Aligned_cols=88  Identities=24%  Similarity=0.318  Sum_probs=74.2

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+.++.+.+|+.+.|.|.+.|.|.|.++|++++..+..  ..++..   ..      ..|.|.+++.+|+|.|+
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~---~~------~~L~I~~v~~~D~G~Y~   69 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA--TAEISM---SG------AVLKIFNIQPEDEGTYE   69 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC--CCEEec---CC------CEEEECcCChhhCEEEE
Confidence            57889999999999999999999999999999999998866532  222221   11      24999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.|.+|..+.++.|.|+
T Consensus        70 C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          70 CEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EEEEcCCCceEEEEEEEEC
Confidence            9999999999999999874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.37  E-value=4.8e-12  Score=113.87  Aligned_cols=87  Identities=20%  Similarity=0.298  Sum_probs=69.4

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+.++|.|.+.|.|.+.+.|++++..+.. ...++.+.....+ ....++|.|.+++.+|+|.|+|+|.|.+|..++++.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~-~~~r~~~~~~~~~-~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   78 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP-EMSRYLVSTKEVG-DEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ   78 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCC-CCCcEEEEEecCC-CcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence            78999999999999999999887765533 2334444332221 244678999999999999999999999999999999


Q ss_pred             EEeecCCCC
Q psy12803        464 LFESNAKTP  472 (902)
Q Consensus       464 L~V~~~p~~  472 (902)
                      |.|.++|..
T Consensus        79 L~V~~~P~~   87 (88)
T cd05735          79 LTVQEPPDP   87 (88)
T ss_pred             EEEeCCCCC
Confidence            999987654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.37  E-value=4.7e-12  Score=116.91  Aligned_cols=89  Identities=21%  Similarity=0.340  Sum_probs=70.5

Q ss_pred             ceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        377 RRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.+.+|++++|.|.++| .|+|.+.|+|++..+.. ...... .........+.++|.|.+++.+|+|.|+|+|.|..
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~-~~~~~~-~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTN-KLTEIV-TSENESEYRYVSELKLVRLKESEAGTYTFLASNSD   88 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCC-CcceeE-EEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence            4678999999999999999 89999999998776643 222222 11111223456789999999999999999999999


Q ss_pred             ceeEEEEEEEee
Q psy12803        456 DIAKGSLILFES  467 (902)
Q Consensus       456 G~~~~s~~L~V~  467 (902)
                      |.++.++.|.|.
T Consensus        89 G~~~~t~~L~V~  100 (101)
T cd04975          89 ASKSLTFELYVN  100 (101)
T ss_pred             ccEEEEEEEEEE
Confidence            999999999885

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.34  E-value=5.5e-12  Score=114.38  Aligned_cols=86  Identities=22%  Similarity=0.206  Sum_probs=68.5

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+.....  +.+......    .++|.|.+++.+|+|.|+|.|.|.
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~--~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~   80 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDH--YNVKVEQGK----YASLTIKGVSSEDSGKYGIVVKNK   80 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCC--EEEEEcCCC----EEEEEEccCChhhCEEEEEEEEEC
Confidence            45567899999999999999999999999998876644333  232222111    245999999999999999999999


Q ss_pred             CceeEEEEEEEe
Q psy12803        455 VDIAKGSLILFE  466 (902)
Q Consensus       455 ~G~~~~s~~L~V  466 (902)
                      +|..+.++.|.|
T Consensus        81 ~G~~~~~~~v~v   92 (92)
T cd05737          81 YGGETVDVTVSV   92 (92)
T ss_pred             CCcceEEEEEeC
Confidence            999999988875

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.34  E-value=1.1e-11  Score=113.34  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=68.9

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      +.+.|....+.+|++++|.|.+.|.|. |.++|++.++..+.....++.+.....    ..++|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~----~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD----YSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC----CceEEEEeccChhhCEEEEEE
Confidence            345566778999999999999999995 799999844443222233443322221    245799999999999999999


Q ss_pred             EEeCC-ceeEEEEEEEe
Q psy12803        451 SKNEV-DIAKGSLILFE  466 (902)
Q Consensus       451 A~N~~-G~~~~s~~L~V  466 (902)
                      |.|.+ |.+++++.|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            99997 88999998876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.32  E-value=8.9e-12  Score=115.15  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=70.4

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|++..+..... .+.........+.+.++|.|.+++.+|+|.|+|+|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLT-EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcc-eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            56788899999999999999999999998877653322 22111111112345678999999999999999999999999


Q ss_pred             eEEEEEEEee
Q psy12803        458 AKGSLILFES  467 (902)
Q Consensus       458 ~~~s~~L~V~  467 (902)
                      ++.++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999999885

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.32  E-value=1.2e-11  Score=110.94  Aligned_cols=83  Identities=17%  Similarity=0.207  Sum_probs=67.9

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+.....     .++|.|.++..+|+|.|+|.|.|.+|.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~-----~~~L~I~~~~~~D~G~Y~c~a~N~~G~   77 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVESYKD-----LSSFVIEGAEREDEGVYTITVTNPVGE   77 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC-CCeEEEEEcCC-----eEEEEECCCccCcCEEEEEEEEeCCCc
Confidence            467889999999999999999999999988766432 22444433221     356999999999999999999999999


Q ss_pred             eEEEEEEEe
Q psy12803        458 AKGSLILFE  466 (902)
Q Consensus       458 ~~~s~~L~V  466 (902)
                      +++++.|.|
T Consensus        78 ~~~~~~l~V   86 (86)
T cd05894          78 DHASLFVKV   86 (86)
T ss_pred             EEEEEEEEC
Confidence            999998875

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.32  E-value=1.6e-11  Score=110.09  Aligned_cols=90  Identities=29%  Similarity=0.361  Sum_probs=75.8

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      |.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.......  +....     ..++|.|.+++.+|+|.|+|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~--~~~~~-----~~~~L~I~~v~~~D~G~Y~C   73 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQ--IESDG-----GSSSLTIKNVTREDAGTYTC   73 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEE--EEEET-----TEEEEEESSESGGGSEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeee--eeccc-----ceeEEccCCCChhhCEEEEE
Confidence            678888899999999999999999999999999999977765533333  33222     24569999999999999999


Q ss_pred             EEEeCCceeEEEEEEEe
Q psy12803        450 ISKNEVDIAKGSLILFE  466 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V  466 (902)
                      .|.|..|..++++.|.|
T Consensus        74 ~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   74 VASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEC
Confidence            99999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.31  E-value=9.2e-12  Score=108.58  Aligned_cols=75  Identities=25%  Similarity=0.333  Sum_probs=60.5

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |.|+|.+.|.|.|.|.|++++..+.. +..++.+.....+    .++|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~-~~~r~~~~~~~~g----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQY-NTDRISLYQDNSG----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcC-CCCeEEEEEcCCC----cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999999999999999998766643 3345555433322    135999999999999999999999999999999875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.31  E-value=1.4e-11  Score=110.60  Aligned_cols=88  Identities=23%  Similarity=0.347  Sum_probs=72.2

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      |+.+...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....  ...   ..      ...|.|.+++.+|+|.|+
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~--~~~---~~------~~~L~i~~v~~~D~G~Y~   69 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSA--EIS---MS------GAVLKIPNIQFEDEGTYE   69 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCcc--EEE---Ee------CCEEEECCCCcccCEEEE
Confidence            4567777888889999999999999999999999999877654321  111   11      134999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.|..|..+.++.|.|.
T Consensus        70 C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          70 CEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             EEEEECCCcEEEEEEEEEC
Confidence            9999999999999998873

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.30  E-value=2.6e-11  Score=111.03  Aligned_cols=93  Identities=16%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC---CceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD---GVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~---~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      .|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+....   ..++.+...     ...++|.|.+++.+|+|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~L~I~~v~~~D~G   76 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH-----ARVSSLTLKYIQYTDAG   76 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC-----ccEEEEEEecCccCcCE
Confidence            5788877766666678999999999999999999998765543211   112222111     12357999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEe
Q psy12803        446 TYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      .|+|.|.|.+|.+++++.|.|
T Consensus        77 ~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          77 EYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEEecCCCCeeEEEEEEC
Confidence            999999999999999998875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.30  E-value=1.2e-11  Score=112.07  Aligned_cols=91  Identities=23%  Similarity=0.431  Sum_probs=74.1

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..  ..++.+....     ..++|.|.+++.+|+|.|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~--~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y   74 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS--SQRHQITSTE-----YKSTFEISKVQMSDEGNY   74 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC--CCcEEEEEcC-----CeeEEEECCCCcccCEeE
Confidence            368888889999999999999999999999999999998765533  2233332221     135699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEE
Q psy12803        448 RCISKNEVDIAKGSLILF  465 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~  465 (902)
                      +|.|.|.+|..+.++.|+
T Consensus        75 ~C~a~N~~G~~~~~~~l~   92 (92)
T cd05747          75 TVVVENSEGKQEAQFTLT   92 (92)
T ss_pred             EEEEEcCCCCEeEEEEeC
Confidence            999999999999888763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.27  E-value=2.5e-11  Score=110.50  Aligned_cols=92  Identities=24%  Similarity=0.418  Sum_probs=71.3

Q ss_pred             CCEEEEcC--ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRN--RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p--~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ||.|....  .+..+.+|+++.|.|.+.|.|.|.|.|++++..+... ..++....  .     .+.|.|.+++.+|+|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~--~-----~~~L~I~~v~~~D~G~   72 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNE--D-----GSEMTILDVDKLDEAE   72 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeC--C-----CCEEEECCCChhhCEE
Confidence            35555543  3457889999999999999999999999887665332 23333221  1     1349999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeec
Q psy12803        447 YRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |+|.|.|.+|..+.++.|.|..
T Consensus        73 Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          73 YTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEEEEEcCCCeEEEEEEEEEEe
Confidence            9999999999999999998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.27  E-value=1.4e-11  Score=106.83  Aligned_cols=74  Identities=24%  Similarity=0.329  Sum_probs=60.5

Q ss_pred             cCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      +|+++.|.|.+.|.|.|.|.|++++..+...  .++.+.  ..      .+|.|.+++.+|+|.|+|.|.|.+|..+.++
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~--~~------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   70 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVL--SS------GTLRISRVALHDQGQYECQAVNIVGSQRTVA   70 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEc--cC------CeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence            6899999999999999999999987665432  222221  12      2499999999999999999999999999999


Q ss_pred             EEEe
Q psy12803        463 ILFE  466 (902)
Q Consensus       463 ~L~V  466 (902)
                      .|.|
T Consensus        71 ~L~V   74 (74)
T cd05745          71 QLTV   74 (74)
T ss_pred             EEeC
Confidence            8875

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.27  E-value=2e-11  Score=106.49  Aligned_cols=75  Identities=24%  Similarity=0.328  Sum_probs=60.6

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |+|+|.+.|.|.|.|.|++++..+.. ...++.+.....+    .++|.|.+++.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTH-NTDRVSMHQDNCG----YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCC-CCCeEEEEEcCCC----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            57999999999999999998876643 3345554433222    235999999999999999999999999999999875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.26  E-value=4.4e-11  Score=109.76  Aligned_cols=93  Identities=23%  Similarity=0.304  Sum_probs=70.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ceeeec---CCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTLIEH---DGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l~~~---~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      ++|.+.. +.++.+.+|++++|.|.+.|.|.|.|.|++..  ..+...   ...++.+....     ..++|.|.+++.+
T Consensus         1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-----~~~~L~I~~v~~~   74 (98)
T cd05870           1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-----GESSLHIKDVKLS   74 (98)
T ss_pred             CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-----CeeEEEEeeCCcC
Confidence            3577765 66788999999999999999999999999853  222111   11233332111     1245999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |+|.|+|.|.|.+|....++.|.|
T Consensus        75 D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          75 DSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CCEEEEEEEeccCCcceeEEEEeC
Confidence            999999999999999999888865

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.25  E-value=1.9e-11  Score=109.10  Aligned_cols=84  Identities=20%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      |...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+..  ..++...   .      ..|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~--~~~~~~~---~------~~L~i~~~~~~D~G~Y~C~a   70 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS--ENRIEVE---A------GDLRITKLSLSDSGMYQCVA   70 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC--CCeEEEe---C------CEEEEeeCCHHHCEEEEEEE
Confidence            45567788999999999999999999999999998776532  2233321   1      24999999999999999999


Q ss_pred             EeCCceeEEEEEEEe
Q psy12803        452 KNEVDIAKGSLILFE  466 (902)
Q Consensus       452 ~N~~G~~~~s~~L~V  466 (902)
                      .|..|...+++.|.|
T Consensus        71 ~N~~G~~~~~~~l~V   85 (85)
T cd05728          71 ENKHGTIYASAELAV   85 (85)
T ss_pred             ECCCCeEEEEEEEEC
Confidence            999999999998875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.25  E-value=2e-11  Score=105.86  Aligned_cols=73  Identities=27%  Similarity=0.412  Sum_probs=60.4

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+++.|.|.+.|.|.|+|.|++++..+..  ..++.+..  ++      +|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~--~~r~~~~~--~g------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   70 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVN--NSRISIWD--DG------SLEILNITKLDEGSYTCFAENNRGKANSTGV   70 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEeccc--CCCEEEcC--CC------EEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence            67899999999999999999998765532  33444322  22      3999999999999999999999999999999


Q ss_pred             EEe
Q psy12803        464 LFE  466 (902)
Q Consensus       464 L~V  466 (902)
                      |.|
T Consensus        71 l~~   73 (73)
T cd05852          71 LSV   73 (73)
T ss_pred             EEC
Confidence            875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.24  E-value=6.3e-11  Score=107.88  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=70.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC---CceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD---GVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~---~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.|. .+.+..+.+|+++.|.|.+.+.|.|.+.|++++..+....   ..++.+...     ...++|.|.+++.+|+|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G   75 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-----ARVSSLTLKDVQLTDAG   75 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC-----ccEEEEEECcCCcCcCE
Confidence            56775 4556789999999999999999999999999775443211   112222111     12457999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEe
Q psy12803        446 TYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      .|+|.|.|.+|.++.++.|.|
T Consensus        76 ~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          76 RYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EeEEEEEeCCCCcEEEEEEeC
Confidence            999999999999999988865

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.24  E-value=3.5e-11  Score=109.18  Aligned_cols=86  Identities=21%  Similarity=0.169  Sum_probs=68.1

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .|..+.+.+|+++.|.|.+.+.|.|.+.|++++..+.....  +........    .++|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~   80 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEH--YSVKLEQGK----YASLTIKGVTSEDSGKYSINVKNK   80 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCC--EEEEEcCCC----EEEEEECCCChhhCEEEEEEEEeC
Confidence            35567899999999999999999999999998876643322  222221111    245999999999999999999999


Q ss_pred             CceeEEEEEEEe
Q psy12803        455 VDIAKGSLILFE  466 (902)
Q Consensus       455 ~G~~~~s~~L~V  466 (902)
                      +|.++.++.|.|
T Consensus        81 ~G~~~~~~~v~~   92 (92)
T cd05891          81 YGGETVDVTVSV   92 (92)
T ss_pred             CCceeeEEEEEC
Confidence            999999998875

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.24  E-value=5.1e-11  Score=108.62  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=68.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec---CCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH---DGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~---~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+...   ...+....  ..+. .....+.+..++.+|+|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~~-~~~~~i~~~~~~~~D~G   77 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL--PSGS-LFFLRVVHGRKGRSDEG   77 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEe--cCCc-EEEEEeeccCCCcCcCE
Confidence            588888999999999999999999999999999999987665431   11111111  1111 11122333345799999


Q ss_pred             EEEEEEEeCCce-eEEEEEEEe
Q psy12803        446 TYRCISKNEVDI-AKGSLILFE  466 (902)
Q Consensus       446 ~YtC~A~N~~G~-~~~s~~L~V  466 (902)
                      .|+|.|.|.+|. .+..+.|.|
T Consensus        78 ~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          78 VYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEEccccceecceEEEEe
Confidence            999999999999 577777776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.23  E-value=4.4e-11  Score=104.39  Aligned_cols=75  Identities=23%  Similarity=0.366  Sum_probs=60.5

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      |+++.|.|.+.|.|.|+++|++++..+...... ++..   ..      .+|.|.+++.+|+|.|+|.|.|..|...+++
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~---~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   71 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV---SS------GALILTDVQPSDTAVYQCEARNRHGNLLANA   71 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe---eC------CEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence            688999999999999999999987665432221 2222   11      2499999999999999999999999999999


Q ss_pred             EEEee
Q psy12803        463 ILFES  467 (902)
Q Consensus       463 ~L~V~  467 (902)
                      .|.|.
T Consensus        72 ~l~V~   76 (76)
T cd05867          72 HVHVV   76 (76)
T ss_pred             EEEEC
Confidence            99873

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.23  E-value=3.9e-11  Score=108.29  Aligned_cols=87  Identities=24%  Similarity=0.274  Sum_probs=68.2

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      ...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  ......     ...++|.|.+++.+|.|.|+|.|.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~~D~g~Y~C~A~   76 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRT--DTLETT-----VDIYNLQLSNITSETQTTVTCTAE   76 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCcc--EEEEec-----CCEEEEEEecCCcccCEEEEEEEE
Confidence            3455667799999999999999999999999998876533211  111111     113469999999999999999999


Q ss_pred             eCCceeEEEEEEEe
Q psy12803        453 NEVDIAKGSLILFE  466 (902)
Q Consensus       453 N~~G~~~~s~~L~V  466 (902)
                      |..|...+++.|.|
T Consensus        77 N~~G~~~~~~~L~v   90 (90)
T cd04972          77 NPVGQANVSVQVTV   90 (90)
T ss_pred             CCCCceeEEEEEeC
Confidence            99999999998865

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.22  E-value=5.5e-11  Score=105.73  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      +.+.+|+.+.|.|.+.|.|.|.+.|++++..+...... .+... ..      ..+|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~------~~~l~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-NQ------HWSLIMESVVPSDKGNYTCVVENEYGS   76 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe-CC------ceEEEEccCCcccCEEEEEEEEeCCCE
Confidence            56889999999999999999999999988766432211 11111 11      235999999999999999999999999


Q ss_pred             eEEEEEEEe
Q psy12803        458 AKGSLILFE  466 (902)
Q Consensus       458 ~~~s~~L~V  466 (902)
                      .+.++.|.|
T Consensus        77 ~~~~~~l~v   85 (85)
T cd05857          77 INHTYHLDV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            999998875

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.22  E-value=7.2e-11  Score=101.67  Aligned_cols=71  Identities=27%  Similarity=0.402  Sum_probs=57.9

Q ss_pred             eEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       386 ~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      ++.|.|.+.|.|.|.++|++++..+....  ++.+...  +.      |.|.+++.+|+|.|+|.|.|.+|+.++++.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~--~~~~~~~--~~------l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSD--YFKIVKE--HN------LQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCC--CEEEEec--CC------EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            47899999999999999999887764322  3333222  22      88999999999999999999999999999987


Q ss_pred             e
Q psy12803        466 E  466 (902)
Q Consensus       466 V  466 (902)
                      |
T Consensus        71 V   71 (71)
T cd05723          71 I   71 (71)
T ss_pred             C
Confidence            5

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.22  E-value=8.8e-11  Score=107.76  Aligned_cols=94  Identities=21%  Similarity=0.322  Sum_probs=72.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-CeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-sG~  446 (902)
                      ||.+.. +..+.+.+|+++.|.|.+.|.|.| .|.|++++..+......++.+...... ....++|.|.+++.+| .|.
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence            566644 456778999999999999999999 699999887665443345555433221 2345789999999955 899


Q ss_pred             EEEEEEeCCceeEEEEEE
Q psy12803        447 YRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L  464 (902)
                      |+|.|.|..|.+++++.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999999888876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.21  E-value=9.5e-11  Score=109.86  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             CCCEEEEcCceeee----ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CC
Q psy12803        368 VPPQILIRNRRVGV----PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-IS  442 (902)
Q Consensus       368 ~~P~i~~~p~~~~v----~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~  442 (902)
                      ++|.|...+....+    ..|..+.|.|.+.|.|.|.+.|++++..+.. ...++.+..... .....++|+|.+++ .+
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~-~~~r~~~~~~~~-~~~~~s~L~I~~v~~~~   80 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDL-GNPRYEETTEHT-GTVHTSILTIINVSAAL   80 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCC-CCCeEEEEeecc-CccceeEEEECcCCccC
Confidence            45677665552222    2457899999999999999999998766532 233443322221 11234679999997 69


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |.|.|+|.|.|.+|.+..++.|.|...|
T Consensus        81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          81 DYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            9999999999999999999999998765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.21  E-value=6.1e-11  Score=103.59  Aligned_cols=75  Identities=17%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |++++|.|.+.|.|.|+|.|++++..+...........  ..      ..|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   72 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DG------DTIIFSKVQERSSAVYQCNASNEYGYLLANAF   72 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cC------CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence            67899999999999999999998776643221111111  11      24999999999999999999999999999999


Q ss_pred             EEe
Q psy12803        464 LFE  466 (902)
Q Consensus       464 L~V  466 (902)
                      |.|
T Consensus        73 l~v   75 (76)
T cd05868          73 VNV   75 (76)
T ss_pred             EEe
Confidence            987

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.20  E-value=7.6e-11  Score=102.75  Aligned_cols=75  Identities=25%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      ++|.|.+.|.|.|.|.|++++..+.. ...++.+.....+    ..+|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~-~~~r~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTY-NTDRISLYQDNCG----RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCC-CCCcEEEEEcCCC----eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            57999999999999999998766543 2334444332222    235999999999999999999999999999998875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.19  E-value=1.2e-10  Score=104.01  Aligned_cols=82  Identities=26%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             ceEEEEEEeeccCCc--eEEEEecCCeeeecC-CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        385 RTATLECEVEAFPLS--VRYWEFIDGTLIEHD-GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       385 ~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~-~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ++++|.|.+.|.|.|  .+.|++++..+.... ..++.......    ..++|+|.+++.+|+|.|+|.|.|.+|.++++
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKE----TIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecc----eEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            468999999999987  579999876664321 22222111110    12469999999999999999999999999999


Q ss_pred             EEEEeecCC
Q psy12803        462 LILFESNAK  470 (902)
Q Consensus       462 ~~L~V~~~p  470 (902)
                      +.|.|..+|
T Consensus        77 ~~L~V~~~P   85 (85)
T cd05854          77 ATLVVRGPP   85 (85)
T ss_pred             EEEEEECCC
Confidence            999998754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.19  E-value=9.6e-11  Score=103.75  Aligned_cols=78  Identities=18%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             EEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       388 ~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .|.|.+.|.|.|+|+|++++..+.....................+.|.|.+++.+|+|.|+|+|.|.+|.+++++.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            378999999999999999887775433222222221111223456799999999999999999999999999988875

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.19  E-value=1.7e-10  Score=104.79  Aligned_cols=88  Identities=20%  Similarity=0.316  Sum_probs=67.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      +.+.+.++.+.+|+++.|.|.+.|.|. .+.|+++++..+.. +.++.+.....     .++|.|.++..+|+|.|+|.|
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~-~~r~~~~~~g~-----~~~L~I~~v~~~D~G~Y~C~A   75 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS-SQRVVVQKEGV-----RSRLTIYNANIEDAGIYRCQA   75 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC-CCCEEEEeCCC-----eeEEEEecCChHHCEEEEEEE
Confidence            445677788999999999999999998 89999865554432 33444432221     235999999999999999999


Q ss_pred             EeCCcee-EEEEEEEe
Q psy12803        452 KNEVDIA-KGSLILFE  466 (902)
Q Consensus       452 ~N~~G~~-~~s~~L~V  466 (902)
                      +|..|.. ..++.|.|
T Consensus        76 ~N~~G~~~~~~i~l~~   91 (92)
T cd05866          76 TDAKGQTQEATVVLEI   91 (92)
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999986 67777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.18  E-value=8.2e-11  Score=102.21  Aligned_cols=76  Identities=25%  Similarity=0.324  Sum_probs=60.5

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+++.|.|.+.|.|.|.|.|++++..+...... ... ....      ..|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~-~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   72 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRR-RVDG------GTLILSNVQPNDTAVYQCNASNVHGYLLANAF   72 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceE-EccC------CEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence            688999999999999999999887665433222 111 1111      34999999999999999999999999999999


Q ss_pred             EEee
Q psy12803        464 LFES  467 (902)
Q Consensus       464 L~V~  467 (902)
                      |.|.
T Consensus        73 l~V~   76 (76)
T cd04978          73 VHVV   76 (76)
T ss_pred             EEEC
Confidence            9873

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.18  E-value=6.9e-11  Score=100.66  Aligned_cols=66  Identities=18%  Similarity=0.130  Sum_probs=54.1

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      ++|.|.+.|+|.|.+.|+|++..+...         ..      .++|.|.++..+|+|.|+|+|+|..|..++++.|.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~---------~~------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK---------HS------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc---------CC------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            579999999999999999987666311         01      235999999999999999999999998877777765


Q ss_pred             e
Q psy12803        467 S  467 (902)
Q Consensus       467 ~  467 (902)
                      .
T Consensus        66 ~   66 (67)
T cd05863          66 I   66 (67)
T ss_pred             E
Confidence            3

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.18  E-value=9.8e-11  Score=102.98  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             EEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       388 ~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .|.|.+.|+|.|+|+|++++..+.........+.....  ..+.++|.|.+++.+|+|.|+|+|+|.+|++++++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINN--TEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecc--cceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            37899999999999999988777543322222222111  12356799999999999999999999999999888764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.17  E-value=9.2e-11  Score=101.60  Aligned_cols=74  Identities=19%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             eEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       386 ~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .+.|.|.+.|.|.|.+.|++++..+..  ..++.+.....     .++|.|.+++.+|+|.|+|.|.|.+|.++.++.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~--~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKL--SGRVQIETTAS-----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCC--CCeEEEEECCC-----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            478999999999999999998877633  23333332221     35699999999999999999999999999999887


Q ss_pred             e
Q psy12803        466 E  466 (902)
Q Consensus       466 V  466 (902)
                      |
T Consensus        74 V   74 (74)
T cd05748          74 V   74 (74)
T ss_pred             C
Confidence            5

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.17  E-value=1.9e-10  Score=104.89  Aligned_cols=86  Identities=22%  Similarity=0.400  Sum_probs=64.6

Q ss_pred             CEEEEcCceeeee---cCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CCCCe
Q psy12803        370 PQILIRNRRVGVP---IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISDFD  445 (902)
Q Consensus       370 P~i~~~p~~~~v~---~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~DsG  445 (902)
                      |.|+..+.++.+.   +|+.++|.|.+.|.|.|+|+|++++..+......++...   ++      .|.|.++. .+|+|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~---~g------~L~i~~~~~~~D~G   72 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI---DG------NLIISNPSEVKDSG   72 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee---CC------eEEEccCCccCcCE
Confidence            6788888876554   478999999999999999999998876643333333222   12      38999885 69999


Q ss_pred             EEEEEEEeCCceeE-EEEEE
Q psy12803        446 TYRCISKNEVDIAK-GSLIL  464 (902)
Q Consensus       446 ~YtC~A~N~~G~~~-~s~~L  464 (902)
                      .|+|.|.|.+|... ..+.|
T Consensus        73 ~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          73 RYQCLATNSIGSILSREALL   92 (94)
T ss_pred             EEEEEEEcCCCeEEeccEEE
Confidence            99999999999884 34443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.16  E-value=2.4e-10  Score=104.11  Aligned_cols=86  Identities=21%  Similarity=0.333  Sum_probs=66.0

Q ss_pred             CEEEEcCceeeeecC---ceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CCCCe
Q psy12803        370 PQILIRNRRVGVPIG---RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISDFD  445 (902)
Q Consensus       370 P~i~~~p~~~~v~~G---~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~DsG  445 (902)
                      |.|...|.++.+.+|   ++++|.|.+.|.|.|+++|++++..+......++.+..         ..|.|.++. .+|+|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---------g~L~I~~~~~~~D~G   72 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA---------GNLVINNPQKARDAG   72 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC---------CeEEEccCCccCcCE
Confidence            678888888877666   57999999999999999999988776433333443321         238998865 59999


Q ss_pred             EEEEEEEeCCceeE-EEEEE
Q psy12803        446 TYRCISKNEVDIAK-GSLIL  464 (902)
Q Consensus       446 ~YtC~A~N~~G~~~-~s~~L  464 (902)
                      .|+|+|+|..|... ..+.|
T Consensus        73 ~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          73 SYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEEEEcCcCcEEEEEEEE
Confidence            99999999999874 35544

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.15  E-value=1.4e-10  Score=100.81  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=56.8

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeee-cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      ++|.|.+.|.|.|.|+|++++..... ....++.+.. ..      ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-ED------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec-CC------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            57999999999999999998764322 1222332211 11      2499999999999999999999999999999998


Q ss_pred             e
Q psy12803        466 E  466 (902)
Q Consensus       466 V  466 (902)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            7

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.15  E-value=1.4e-10  Score=100.21  Aligned_cols=73  Identities=27%  Similarity=0.351  Sum_probs=60.0

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+++.|.|.+.+.|.|.+.|++++..+...  .++.+.  ..+      +|.|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~--~~~------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   70 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS--SRICIW--PDG------SLEILNVTKSDEGKYTCFAENFFGKANSTGS   70 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC--CCEEEC--CCC------eEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence            678999999999999999999988765432  233322  222      3999999999999999999999999999998


Q ss_pred             EEe
Q psy12803        464 LFE  466 (902)
Q Consensus       464 L~V  466 (902)
                      |.|
T Consensus        71 l~V   73 (73)
T cd04969          71 LSV   73 (73)
T ss_pred             EEC
Confidence            875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.15  E-value=2.1e-10  Score=99.31  Aligned_cols=74  Identities=27%  Similarity=0.434  Sum_probs=59.4

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+.+.|.|.+.|.|.|.+.|+++++.+.... .+.....  .      .+|.|.+++.+|+|.|+|+|.|..|.++.++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~--~------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVYD--N------GTLDILITTVKDTGSFTCIASNAAGEATATVE   71 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEec--C------CEEEEEECChhhCEEEEEEEECCCCeEEEEEE
Confidence            6889999999999999999998666655433 2222221  2      24999999999999999999999999999888


Q ss_pred             EEe
Q psy12803        464 LFE  466 (902)
Q Consensus       464 L~V  466 (902)
                      |.|
T Consensus        72 l~v   74 (74)
T cd05764          72 LHI   74 (74)
T ss_pred             EEC
Confidence            875

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.14  E-value=2.8e-10  Score=102.70  Aligned_cols=80  Identities=25%  Similarity=0.393  Sum_probs=63.3

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeee------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIE------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      |++++|.|.+.+.|.|.+.|++++..+..      ....++.+.  ..      .+|+|.+++.+|+|.|+|.|.|.+|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--QT------GDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--CC------CeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            68899999999999999999998765421      112233322  11      24999999999999999999999999


Q ss_pred             eEEEEEEEeecCCC
Q psy12803        458 AKGSLILFESNAKT  471 (902)
Q Consensus       458 ~~~s~~L~V~~~p~  471 (902)
                      ..+++.|.|.+...
T Consensus        73 ~~~~~~l~V~~~~~   86 (90)
T cd05726          73 ILTKAYLEVTDVIA   86 (90)
T ss_pred             eEEEEEEEEeeccc
Confidence            99999999987543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.13  E-value=2.6e-10  Score=101.68  Aligned_cols=82  Identities=21%  Similarity=0.255  Sum_probs=61.3

Q ss_pred             ceEEEEEEeeccCCc--eEEEEecCCeeeecC-CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        385 RTATLECEVEAFPLS--VRYWEFIDGTLIEHD-GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       385 ~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~-~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ++++|.|.+.+.|.|  .+.|++++..+.... ..++.......    ..++|.|.+++.+|+|.|+|.|.|.+|..+++
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~   76 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKD----SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEeccc----ccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence            468999999999987  568998877664322 12221111100    12359999999999999999999999999999


Q ss_pred             EEEEeecCC
Q psy12803        462 LILFESNAK  470 (902)
Q Consensus       462 ~~L~V~~~p  470 (902)
                      +.|.|..+|
T Consensus        77 ~~l~V~~pP   85 (85)
T cd04970          77 ADLIVRGPP   85 (85)
T ss_pred             EEEEEECCC
Confidence            999998754

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.13  E-value=2.3e-10  Score=103.38  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=58.4

Q ss_pred             CceEEEEEEeeccCCceEEEEecC----CeeeecCCceEEEeec--CCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFID----GTLIEHDGVKYSISDV--DKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~----~~l~~~~~~~~~~~~~--~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      |++++|.|.+.|.|.|.|+|++++    ..+.............  .........+|.|.+|+.+|+|.|+|+|.|.+|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999863    2221111111111110  0000011235999999999999999999999999


Q ss_pred             eEEEEEEEee
Q psy12803        458 AKGSLILFES  467 (902)
Q Consensus       458 ~~~s~~L~V~  467 (902)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999999873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.12  E-value=2.7e-10  Score=101.66  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=63.0

Q ss_pred             ceEEEEEEeeccC--CceEEEEecCCeeee-cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        385 RTATLECEVEAFP--LSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       385 ~~v~L~C~a~g~P--~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      +++.|.|.+.+.|  .+.|.|++++..+.. ....++.......    ..+.|.|.+++.+|+|+|+|.|+|.++..+++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~----~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQD----SAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCC----CCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence            4689999998754  778999998877743 2333443321100    11249999999999999999999999999999


Q ss_pred             EEEEeecCC
Q psy12803        462 LILFESNAK  470 (902)
Q Consensus       462 ~~L~V~~~p  470 (902)
                      +.|.|..+|
T Consensus        77 a~L~V~~pP   85 (85)
T cd05853          77 ADLIVRGPP   85 (85)
T ss_pred             EEEEEecCC
Confidence            999999765

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.12  E-value=2.8e-10  Score=102.75  Aligned_cols=83  Identities=18%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             CceEEEEEEeeccCCceEEEEecC----CeeeecCCceEEEeecCC--CceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFID----GTLIEHDGVKYSISDVDK--GSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~----~~l~~~~~~~~~~~~~~~--~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      |++++|.|.+.+.|.|.|+|++..    ..+...............  ......++|.|.+++.+|+|.|+|+|.|.+|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            678999999999999999999853    222211111111111100  00011357999999999999999999999999


Q ss_pred             eEEEEEEEe
Q psy12803        458 AKGSLILFE  466 (902)
Q Consensus       458 ~~~s~~L~V  466 (902)
                      ..+++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.12  E-value=7.1e-10  Score=100.62  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=65.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      +.+.|....+.+|+++.|.|.+.|.|. .+.|++.++..+..... +.......    ..++|+|.+++.+|+|.|+|.|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~-~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A   76 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQ-ISVVQNDD----VRSTLTIYNANIEDAGIYKCVA   76 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCC-EEEEeCCC----CEEEEEEecCCcccCEEEEEEE
Confidence            455677788999999999999999974 99999755443332222 22222111    2457999999999999999999


Q ss_pred             EeCCc-eeEEEEEEEe
Q psy12803        452 KNEVD-IAKGSLILFE  466 (902)
Q Consensus       452 ~N~~G-~~~~s~~L~V  466 (902)
                      .|.+| ..++++.|.|
T Consensus        77 ~N~~g~~~~~sv~l~~   92 (92)
T cd04977          77 TDAKGTESEATVNLKI   92 (92)
T ss_pred             EcCCCCcceeEEEEEC
Confidence            99975 4577777754

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.10  E-value=2.6e-10  Score=98.16  Aligned_cols=70  Identities=27%  Similarity=0.366  Sum_probs=56.5

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +.|.|.+.|.|.|.+.|++++..+... ..  ... ..      ..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~--~~~-~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RT--KKL-NN------NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC-ce--eEE-cC------CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            579999999999999999988765432 11  111 11      134999999999999999999999999999999887

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.10  E-value=4.3e-10  Score=102.45  Aligned_cols=87  Identities=22%  Similarity=0.251  Sum_probs=65.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc-----CCCCCeE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV-----NISDFDT  446 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V-----~~~DsG~  446 (902)
                      |...|.+..+.+|+++.|.|.+.+.|.|.+.|++++..+......++...  ..++      |.|.++     +.+|+|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~--~~~~------l~i~~v~~~~~~~~D~G~   73 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL--PNGS------LLITSVVHSKHNKPDEGF   73 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc--cCCe------EEEeeeeccCCCCCcCEE
Confidence            45677788889999999999999999999999998776643332222222  1222      666665     6899999


Q ss_pred             EEEEEEeC-Ccee-EEEEEEEe
Q psy12803        447 YRCISKNE-VDIA-KGSLILFE  466 (902)
Q Consensus       447 YtC~A~N~-~G~~-~~s~~L~V  466 (902)
                      |+|.|.|. .|.. +..+.|.|
T Consensus        74 Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          74 YQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEEEEECCccCcEEEeeeEEeC
Confidence            99999999 9987 56776654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.10  E-value=2.4e-10  Score=100.41  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      +.+..|+++.|.|.+.+.|.|.+.|++++..+.......  .  .     ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~--~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   74 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--S--R-----KKKWTLSLKNLKPEDSGKYTCHVSNRAGEI   74 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--e--c-----CceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence            456789999999999999999999999887664322111  0  0     112459999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy12803        459 KGSLILFE  466 (902)
Q Consensus       459 ~~s~~L~V  466 (902)
                      ++++.|.|
T Consensus        75 ~~~~~v~v   82 (82)
T cd05856          75 NATYKVDV   82 (82)
T ss_pred             EEEEEEeC
Confidence            98888865

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.09  E-value=3.1e-10  Score=96.95  Aligned_cols=69  Identities=30%  Similarity=0.441  Sum_probs=55.8

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      ++|.|.+.|.|.|.+.|+++++.+..   .++...  ..      .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~--~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEIL--DD------KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC---CcEEEe--eC------CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            57999999999999999998765522   222222  11      24999999999999999999999999999988875

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.09  E-value=5.8e-10  Score=101.47  Aligned_cols=86  Identities=20%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             CCEEEEcCceeeeecC---ceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CCCC
Q psy12803        369 PPQILIRNRRVGVPIG---RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISDF  444 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G---~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~Ds  444 (902)
                      .|.|...|.++.+.++   ..+.|.|.+.|.|.|+++|++++..+... ..++.+.   .      ..|.|.++. .+|+
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~-~~~~~~~---~------g~L~I~~~~~~~D~   70 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT-NDRYSMV---G------GNLVINNPDKYKDA   70 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC-CCeEEEE---C------CEEEECcCCcCCCC
Confidence            4778888887766554   47999999999999999999987765322 2233322   1      239999985 6999


Q ss_pred             eEEEEEEEeCCceeE-EEEEE
Q psy12803        445 DTYRCISKNEVDIAK-GSLIL  464 (902)
Q Consensus       445 G~YtC~A~N~~G~~~-~s~~L  464 (902)
                      |.|+|.|.|.+|... +.++|
T Consensus        71 G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          71 GRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEEEEEEeCcceEEEccEEE
Confidence            999999999999874 45554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.09  E-value=3e-10  Score=97.88  Aligned_cols=70  Identities=19%  Similarity=0.205  Sum_probs=55.7

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +.|.|.+.|.|.|.+.|++++..+...  .++..   ..      .+|.|.+++.+|+|.|+|.|.|.+|..+.++.+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~--~~~~~---~~------~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTKK---SG------HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC--CEEEc---CC------CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            579999999999999999987665432  22221   11      24999999999999999999999998887777766


Q ss_pred             e
Q psy12803        467 S  467 (902)
Q Consensus       467 ~  467 (902)
                      .
T Consensus        70 ~   70 (71)
T cd04976          70 V   70 (71)
T ss_pred             E
Confidence            4

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.08  E-value=4.2e-10  Score=98.53  Aligned_cols=73  Identities=21%  Similarity=0.313  Sum_probs=55.2

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE--EEEEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK--GSLIL  464 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~--~s~~L  464 (902)
                      ++|.|.+.|.|.|.+.|++++..+... ..++.+.. ..      .+|.|.+++.+|+|.|+|.|.|.+|...  +.+.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~-~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDG-QGNYSVSS-KE------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCC-CccEEEeC-CC------CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            579999999999999999987765432 22333221 11      2499999999999999999999999874  45566


Q ss_pred             Eee
Q psy12803        465 FES  467 (902)
Q Consensus       465 ~V~  467 (902)
                      .|.
T Consensus        73 ~v~   75 (77)
T cd05760          73 SII   75 (77)
T ss_pred             EEe
Confidence            554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.08  E-value=2.6e-10  Score=97.56  Aligned_cols=68  Identities=25%  Similarity=0.456  Sum_probs=54.8

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      |.|.|.+.|.|.|.+.|++++..+..  ..++.+..  .      ++|.|.+++.+|+|.|+|.|.|.+|.++.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~--~~~~~~~~--~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTE--SGKFHISP--E------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCC--CCCEEECC--C------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999987765532  22333321  1      249999999999999999999999999988877

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.08  E-value=3.9e-10  Score=98.92  Aligned_cols=76  Identities=22%  Similarity=0.309  Sum_probs=58.8

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+++.|.|.+.|.|.|.|.|++++..+...  .++.+....     ..++|.|.+++.+|+|.|+|.|.|..|...+...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   73 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDS--ARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD   73 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCC--CCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence            688999999999999999999887665432  233332221     1346999999999999999999999999876665


Q ss_pred             EEe
Q psy12803        464 LFE  466 (902)
Q Consensus       464 L~V  466 (902)
                      +.+
T Consensus        74 ~~~   76 (78)
T cd05743          74 GIL   76 (78)
T ss_pred             EEE
Confidence            543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.08  E-value=1.2e-09  Score=100.16  Aligned_cols=94  Identities=18%  Similarity=0.330  Sum_probs=72.6

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-CeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-sG~  446 (902)
                      ||.+ .....+.+.+|++++|.|.+.+.|.| .|.|.+.+..+......++.+..... .....++|.|.++..+| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcE
Confidence            5666 45556789999999999999999987 57898877665444345666654321 12357889999998877 799


Q ss_pred             EEEEEEeCCceeEEEEEE
Q psy12803        447 YRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L  464 (902)
                      |.|.|.|.+|.++..++|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999999988877

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.08  E-value=4.7e-10  Score=97.71  Aligned_cols=75  Identities=29%  Similarity=0.481  Sum_probs=60.2

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +.|.|.+.|.|.|.+.|++++..+......++....  ..     ++|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~--~~-----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIA--NG-----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeC--CC-----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            479999999999999999988766543333333321  11     24999999999999999999999999999999988


Q ss_pred             ec
Q psy12803        467 SN  468 (902)
Q Consensus       467 ~~  468 (902)
                      .+
T Consensus        74 ~~   75 (76)
T cd05736          74 ED   75 (76)
T ss_pred             Ec
Confidence            63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.07  E-value=2.5e-10  Score=102.65  Aligned_cols=70  Identities=26%  Similarity=0.446  Sum_probs=57.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...+.+..+.+|+++.|.|.+.|+|.|.++|+|++..+...   ......++.|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   74 (88)
T cd05851           5 NVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---AEISMSGAVLKIFNIQPEDEGTYECEAEN   74 (88)
T ss_pred             EEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---CEEecCCCEEEECcCChhhCEEEEEEEEc
Confidence            34556788999999999999999999999999987654321   12233456899999999999999999999

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.07  E-value=3.7e-10  Score=98.03  Aligned_cols=72  Identities=21%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILF  465 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~  465 (902)
                      ++|.|.+.|.|.|.|.|++++..+......++...  ..+      .|.|.+++.+|+|.|+|.|.|..|.. +.++.|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--RSG------ALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--CCc------EEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            57999999999999999998766543233344332  222      39999999999999999999999985 6777777


Q ss_pred             e
Q psy12803        466 E  466 (902)
Q Consensus       466 V  466 (902)
                      |
T Consensus        73 v   73 (74)
T cd05738          73 V   73 (74)
T ss_pred             E
Confidence            6

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.07  E-value=5.4e-10  Score=98.23  Aligned_cols=77  Identities=26%  Similarity=0.357  Sum_probs=57.1

Q ss_pred             CceEEEEEEeeccCCceEEEEecCC---eeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDG---TLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~---~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      |++++|.|.+.+.|.|.+.|+++..   .+...... ........      .++|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   74 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN------IGQLVIYNAQPQDAGLYTCTARNSGGLLR   74 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc------ccEEEEccCCcccCEEEEEEEecCCceEE
Confidence            6889999999999999999998732   11111111 00011111      23599999999999999999999999999


Q ss_pred             EEEEEEe
Q psy12803        460 GSLILFE  466 (902)
Q Consensus       460 ~s~~L~V  466 (902)
                      .++.|.|
T Consensus        75 ~~~~l~v   81 (81)
T cd05765          75 ANFPLSV   81 (81)
T ss_pred             EEEEEeC
Confidence            9999875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.07  E-value=7.5e-10  Score=100.32  Aligned_cols=86  Identities=27%  Similarity=0.356  Sum_probs=65.4

Q ss_pred             CEEEE--cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        370 PQILI--RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       370 P~i~~--~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      |.+..  .+.++.+.+|++++|.|.+.|. .|.|.|++++..+.. .  ++.+.. ..      .+|.|.+++.+|+|.|
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~--~~~~~~-~~------~~L~I~~v~~~D~G~Y   70 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-P--RLQLSN-DN------RTLTFNNVTRSDTGHY   70 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-C--CEEEeC-CC------CEEEECcCChhhCEEE
Confidence            45543  3446789999999999999999 999999988766532 2  222221 11      2499999999999999


Q ss_pred             EEEEEeCCcee-EEEEEEEe
Q psy12803        448 RCISKNEVDIA-KGSLILFE  466 (902)
Q Consensus       448 tC~A~N~~G~~-~~s~~L~V  466 (902)
                      +|.|.|.+|.. +..+.|.|
T Consensus        71 ~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          71 QCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEEEcCCCCEEeeeEEEEe
Confidence            99999999986 45777766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.06  E-value=6.7e-10  Score=98.81  Aligned_cols=83  Identities=25%  Similarity=0.325  Sum_probs=63.3

Q ss_pred             cCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      .|.++.+.+|+++.|.|.+ .+.|.|.+.|++++..+... ..++.+..  .      ++|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~--~------~~L~I~~~~~~D~G~Y~C~a~N   72 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVD--D------GNLLIAEARKSDEGTYKCVATN   72 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEcc--C------CEEEEeECCcccCEEEEEEEEe
Confidence            3566788999999999998 79999999999987665432 22333221  2      2499999999999999999999


Q ss_pred             CCcee-EEEEEEEe
Q psy12803        454 EVDIA-KGSLILFE  466 (902)
Q Consensus       454 ~~G~~-~~s~~L~V  466 (902)
                      ..|.. +..+.|.|
T Consensus        73 ~~G~~~s~~~~l~V   86 (86)
T cd05724          73 MVGERESAAARLSV   86 (86)
T ss_pred             ccCceeeeeEEEEC
Confidence            99986 45555543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.06  E-value=5.6e-10  Score=98.23  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      ....+.+|+.+.|.|.+.+. .+.+.|++++..+..  ..++.+..   .      +|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~--~~~~~~~~---~------~L~I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE--NNRTRITG---E------EVQIKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC--CceEEEeC---C------EEEECCCChhhCEEEEEEEeCCCC
Confidence            45678899999999999986 578999998866643  22333321   1      399999999999999999999999


Q ss_pred             eeEEEEEEEe
Q psy12803        457 IAKGSLILFE  466 (902)
Q Consensus       457 ~~~~s~~L~V  466 (902)
                      .....+.|.|
T Consensus        70 ~~~~~~~v~V   79 (79)
T cd04973          70 SDTTYFSVNV   79 (79)
T ss_pred             cccEEEEEeC
Confidence            9888887765

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.05  E-value=6.1e-10  Score=95.45  Aligned_cols=68  Identities=15%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      |+++.|.|.+.|.|.|.|.|++++..+..  ..++..   .      .+.|.|.++.  |+|.|+|.|.|.+|..++++.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~--~~~~~~---~------~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK--EDEMPV---G------RNVLELTNIY--ESANYTCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCC--ccceec---C------ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence            67899999999999999999998876532  222211   1      1248999874  899999999999999988887


Q ss_pred             E
Q psy12803        464 L  464 (902)
Q Consensus       464 L  464 (902)
                      |
T Consensus        68 l   68 (69)
T cd05739          68 V   68 (69)
T ss_pred             E
Confidence            6

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.05  E-value=1.3e-09  Score=106.64  Aligned_cols=109  Identities=19%  Similarity=0.347  Sum_probs=80.5

Q ss_pred             cEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCee
Q psy12803        347 TLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTL  410 (902)
Q Consensus       347 sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l  410 (902)
                      +|+|.+++.+|+|.|.|.+.+              .+|.+...+......+|+.++|.|.+.+. |. +.|.|++++...
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~   81 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD   81 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence            699999999999999999987              56666665555555578999999999986 54 489999987542


Q ss_pred             ee----cCCceE-EEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        411 IE----HDGVKY-SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       411 ~~----~~~~~~-~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..    ...... ......++++...+.|.|..-...+...|+|.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            11    111111 2334566788888999998766666779999998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.04  E-value=3.9e-10  Score=96.95  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=54.0

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +.|.|.+.|.|.|.+.|++++..+..  ..++.    .      ...|.|.++..+|+|.|+|.|.|.+|..+.+.++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~--~~~~~----~------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVL--NHTFK----R------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCC--CCEEc----c------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            47999999999999999998877643  22211    1      124999999999999999999999998776666654


Q ss_pred             e
Q psy12803        467 S  467 (902)
Q Consensus       467 ~  467 (902)
                      .
T Consensus        69 ~   69 (70)
T cd05864          69 V   69 (70)
T ss_pred             E
Confidence            3

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.04  E-value=6.6e-10  Score=95.09  Aligned_cols=70  Identities=29%  Similarity=0.403  Sum_probs=56.1

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +.|.|.+.|.|.|.+.|++++..+.. .  +.... ..      ..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~--~~~~~-~~------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPA-D--RTKFE-NF------NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCC-C--ceeEe-cC------CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            57999999999999999998866532 1  11111 11      235999999999999999999999999999998877

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.03  E-value=3.6e-10  Score=103.85  Aligned_cols=73  Identities=25%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|+++.|.|.+.|.|.+++.|+|++..+.......... ...+.|+|.+++++|+|.|+|.|.|
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N   77 (98)
T cd05762           4 IQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN   77 (98)
T ss_pred             EECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence            445677899999999999999999999999999876654332211111 2346899999999999999999999

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.02  E-value=9.2e-10  Score=100.36  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             ceeeeecCceEEEEEEeec-----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        377 RRVGVPIGRTATLECEVEA-----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g-----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      ....+.+|+.+.|.|.+.+     .|.+.|.|++++..+........++... .      ..|.|.++..+|+|.|+|.|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~------~~L~I~~~~~~DsG~Y~C~~   79 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ-K------DLLWFLPAALEDSGLYTCVV   79 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec-C------CeEEEccCCcccCeEEEEEE
Confidence            3566889999999999998     6899999999886543211111111111 1      24999999999999999999


Q ss_pred             EeCCceeEEEEEEEe
Q psy12803        452 KNEVDIAKGSLILFE  466 (902)
Q Consensus       452 ~N~~G~~~~s~~L~V  466 (902)
                      +|..|..+.++.|.|
T Consensus        80 ~N~~g~~~~~~~L~v   94 (94)
T cd05756          80 RNSTYCMKVSISLTV   94 (94)
T ss_pred             cCCCccEEEEEEEEC
Confidence            999999999998875

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.01  E-value=3.6e-10  Score=98.03  Aligned_cols=61  Identities=31%  Similarity=0.559  Sum_probs=51.2

Q ss_pred             cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ||+++.|.|.+.|+|.|.|+|+|++..+...  .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   61 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRVALHDQGQYECQAVN   61 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEccCCeEEEeeCCHHhCEEEEEEEEe
Confidence            6999999999999999999999977654322  223345567999999999999999999999

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.01  E-value=2.3e-09  Score=95.35  Aligned_cols=81  Identities=19%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             CceEEEEEEeecc--CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        384 GRTATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       384 G~~v~L~C~a~g~--P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      |+++.|.|.+.+.  |.|.+.|++++..+..........  .........++|.|.+++.+|+|.|+|.|.|..|..+++
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s   78 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQ--SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES   78 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccc--ccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence            7899999999999  889999988765442111100000  111122356789999999999999999999999999998


Q ss_pred             EEEEe
Q psy12803        462 LILFE  466 (902)
Q Consensus       462 ~~L~V  466 (902)
                      ..|.|
T Consensus        79 ~~v~v   83 (84)
T cd05742          79 TKVNI   83 (84)
T ss_pred             EEEEE
Confidence            88876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.99  E-value=5.8e-10  Score=101.50  Aligned_cols=69  Identities=23%  Similarity=0.459  Sum_probs=54.7

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..++.+.+|+++.|.|.+.|.|.|.+.|+|++..+... ..+... ...+.|+|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   79 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAEN   79 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEc
Confidence            34567899999999999999999999999977654332 122222 2345799999999999999999999

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.99  E-value=4.7e-10  Score=101.67  Aligned_cols=70  Identities=17%  Similarity=0.413  Sum_probs=55.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec--cCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+++.+|+++.|.|.+.|.|.|.+.|+|++..+...........  ...+|.|.+++.+|+|.|+|.|.|
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   79 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKN   79 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEE
Confidence            4457899999999999999999999999998766543332222222  123799999999999999999998

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.99  E-value=7.4e-10  Score=101.36  Aligned_cols=72  Identities=26%  Similarity=0.377  Sum_probs=54.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceecc----CCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVA----SSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~----~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+....+.+|++++|.|.+.|.|. |.++|++.++..+.....+.....    .++|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            345567899999999999999995 799999844443332222222221    258999999999999999999993

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.99  E-value=6.5e-10  Score=100.72  Aligned_cols=73  Identities=19%  Similarity=0.468  Sum_probs=57.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..++++.+.+|+++.|.|.+.|+|.|.+.|+|++..+.......... ...++|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             cccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            445677899999999999999999999999999876543322211111 1235899999999999999999998

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.98  E-value=4.8e-10  Score=97.81  Aligned_cols=62  Identities=27%  Similarity=0.478  Sum_probs=50.9

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.|.|.|+++|+|++..+............+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   62 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARN   62 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEEC
Confidence            78999999999999999999997765443322223344567999999999999999999999

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.98  E-value=5.6e-10  Score=96.83  Aligned_cols=60  Identities=25%  Similarity=0.575  Sum_probs=51.1

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+++.|.|.+.|.|.|+|+|+|++..+..  ..+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~--~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N   60 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVN--NSRISIWDDGSLEILNITKLDEGSYTCFAEN   60 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEeccc--CCCEEEcCCCEEEECcCChhHCEEEEEEEEC
Confidence            78999999999999999999997765432  2344555678999999999999999999999

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.97  E-value=2.3e-09  Score=92.73  Aligned_cols=73  Identities=18%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             EEEEEEeec-cCCceEEEEecCCeeeecCCce-EEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        387 ATLECEVEA-FPLSVRYWEFIDGTLIEHDGVK-YSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       387 v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~-~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      +.|.|.+.+ .|.|.+.|++++..+....... +.+...     ...++|.|.+++.+|+|.|+|.|.|.+|.+..++.+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~   75 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK-----KKNSELQINKAKLADSGEYTCVVENILGNDTVTANV   75 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEec-----CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence            479999999 9999999999877665433222 112111     123569999999999999999999999998877653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.97  E-value=1.7e-09  Score=95.79  Aligned_cols=78  Identities=13%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      |...|.++.+.+|+++.|.|.+.|.|.| +|.|++++..+..  .  .    ...     .+.|.|..+  .|+|.|.|+
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~--~----~~~-----~s~L~i~~~--~d~g~Y~C~   65 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--P--P----APS-----PSVLNVPGL--NETSKFSCE   65 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--C--C----CCC-----CCEEEEccc--cCCeEEEEE
Confidence            3456778899999999999999999999 7999998766532  0  0    011     134999887  478999999


Q ss_pred             EEeCCceeE-EEEEE
Q psy12803        451 SKNEVDIAK-GSLIL  464 (902)
Q Consensus       451 A~N~~G~~~-~s~~L  464 (902)
                      |+|.+|... ..++|
T Consensus        66 A~N~~G~~~s~~a~~   80 (81)
T cd05749          66 AHNAKGVTTSRTGTV   80 (81)
T ss_pred             EEeccCcEEeeeEEe
Confidence            999999764 34444

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.97  E-value=7.1e-10  Score=102.45  Aligned_cols=68  Identities=25%  Similarity=0.389  Sum_probs=54.5

Q ss_pred             CcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceecc-------CCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA-------SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~-------~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+++.|.|.+.| .|.|.+.|+|++..+..... ......       .++|.|.++..+|+|.|+|.|.|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLT-EIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcc-eeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            4578999999999999999 99999999998765542222 121211       36899999999999999999999

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.96  E-value=8.6e-10  Score=98.94  Aligned_cols=69  Identities=26%  Similarity=0.499  Sum_probs=57.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.++.+.+|+++.|.|.+.|.|.|.++|+|++..+.....   ....++.|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N   74 (88)
T cd04968           6 VFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE---ISMSGAVLKIPNIQFEDEGTYECEAEN   74 (88)
T ss_pred             ECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccE---EEEeCCEEEECCCCcccCEEEEEEEEE
Confidence            345678899999999999999999999999998765543221   224567999999999999999999998

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.95  E-value=3.9e-09  Score=95.40  Aligned_cols=82  Identities=21%  Similarity=0.317  Sum_probs=61.3

Q ss_pred             CEEEEcCceeeeec---CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC-CCCe
Q psy12803        370 PQILIRNRRVGVPI---GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFD  445 (902)
Q Consensus       370 P~i~~~p~~~~v~~---G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~-~DsG  445 (902)
                      |.|...+.++.+.+   +.++.|.|.+.|.|.|.++|++++..+......++...   .      ..|.|.++.. +|+|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~---~------~~L~i~~~~~~~d~G   72 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV---G------GNLVISNPSKAKDAG   72 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE---C------CEEEEecCCccCCCE
Confidence            67777777765544   46799999999999999999988766533233333321   1      2399998874 9999


Q ss_pred             EEEEEEEeCCceeEE
Q psy12803        446 TYRCISKNEVDIAKG  460 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~  460 (902)
                      .|+|+|+|.+|...+
T Consensus        73 ~Y~C~a~N~~G~~~S   87 (91)
T cd04967          73 RYQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEEcCCCEEEe
Confidence            999999999998754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.95  E-value=9.9e-10  Score=98.41  Aligned_cols=67  Identities=22%  Similarity=0.406  Sum_probs=54.5

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec---cCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV---ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.+.+|+++.|.|.+.|.|.|.+.|+|++..+..... +....   ..++|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~-r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   73 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEG-RVRVESYKDLSSFVIEGAEREDEGVYTITVTN   73 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCC-eEEEEEcCCeEEEEECCCccCcCEEEEEEEEe
Confidence            47789999999999999999999999998766543221 22221   235899999999999999999998

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.94  E-value=9.2e-09  Score=93.95  Aligned_cols=90  Identities=19%  Similarity=0.342  Sum_probs=74.0

Q ss_pred             CceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      ...+.|.+|+++.|.|.++++|.|+ +.|.+++..+.......  ........+++.++|.|.+++.+|+|.|+|.|+|+
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~--~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~   87 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHY--VKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS   87 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccce--eEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence            3457899999999999999999997 99998877654333322  22233345679999999999999999999999999


Q ss_pred             CceeEEEEEEEee
Q psy12803        455 VDIAKGSLILFES  467 (902)
Q Consensus       455 ~G~~~~s~~L~V~  467 (902)
                      ....+.++.|.|+
T Consensus        88 ~~~~s~tF~l~v~  100 (101)
T cd05860          88 DASASVTFNVYVN  100 (101)
T ss_pred             CCeEEEEEEEEEe
Confidence            9999999999875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.93  E-value=3.2e-09  Score=93.25  Aligned_cols=72  Identities=24%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-E
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-K  459 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~  459 (902)
                      |+|.|.+.|+|.|.+.|++.++.....      ...++...  .      ..+|.|.++..+|+|.|+|.|.|..|.+ +
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--S------NGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--c------CCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            579999999999999999875432110      11122221  1      2359999999999999999999999987 6


Q ss_pred             EEEEEEe
Q psy12803        460 GSLILFE  466 (902)
Q Consensus       460 ~s~~L~V  466 (902)
                      .++.|.|
T Consensus        73 ~~~~l~~   79 (79)
T cd05734          73 KSMVLTV   79 (79)
T ss_pred             eEEEEeC
Confidence            6666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.93  E-value=3.6e-09  Score=96.39  Aligned_cols=77  Identities=30%  Similarity=0.456  Sum_probs=60.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEee-----eeecCceeEEeecCC-C
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI-----NRINMGAYMCLADNV-P  369 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~V-----t~~DsG~YtC~A~N~-~  369 (902)
                      ..|.+..+.+|+++.|.|.+.+.|.|.++|+|++..+......+.....+++|.|.++     +.+|+|.|+|.|.|. .
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~   83 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSL   83 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence            3566778899999999999999999999999977665433332344455678888887     589999999999996 5


Q ss_pred             CEE
Q psy12803        370 PQI  372 (902)
Q Consensus       370 P~i  372 (902)
                      ..+
T Consensus        84 G~~   86 (95)
T cd05722          84 GSI   86 (95)
T ss_pred             CcE
Confidence            444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.93  E-value=2.4e-09  Score=98.26  Aligned_cols=73  Identities=23%  Similarity=0.403  Sum_probs=55.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC-ccccc----CCccceec---cCCcEEEEeeeeecCceeEEeec
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN-KPITL----GSWKDSAV---ASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~-~~~~~----~~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      +..+.++++.+|++++|.|.+.|.|.|.|.|+|... ..+..    ...+....   ...+|.|.+++.+|+|.|+|.|.
T Consensus         5 i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~   84 (98)
T cd05870           5 IIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAA   84 (98)
T ss_pred             EEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEe
Confidence            345667899999999999999999999999999532 22111    11122222   23589999999999999999999


Q ss_pred             C
Q psy12803        367 N  367 (902)
Q Consensus       367 N  367 (902)
                      |
T Consensus        85 N   85 (98)
T cd05870          85 S   85 (98)
T ss_pred             c
Confidence            9

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.93  E-value=2.4e-09  Score=95.17  Aligned_cols=69  Identities=25%  Similarity=0.463  Sum_probs=56.5

Q ss_pred             CCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++.+.+|+++.|.|.+ .+.|.|.+.|+|++..+... ..+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   72 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATN   72 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEe
Confidence            456789999999999998 78999999999977654432 2233344467999999999999999999999

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.92  E-value=1.3e-08  Score=90.80  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc--eeEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD--IAKGS  461 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G--~~~~s  461 (902)
                      |++++|.|.+.+.|.+.+.|++.++.............   .......++|.|.+++.+|+|.|+|.|.|..+  ..+.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s   77 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVK---VPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK   77 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEe---cCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence            78999999999999999999876653211000000111   11122456899999999999999999999876  66788


Q ss_pred             EEEEee
Q psy12803        462 LILFES  467 (902)
Q Consensus       462 ~~L~V~  467 (902)
                      +.|.|.
T Consensus        78 v~i~V~   83 (84)
T cd05861          78 VNITVH   83 (84)
T ss_pred             EEEEEe
Confidence            888775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.91  E-value=1.3e-09  Score=94.69  Aligned_cols=62  Identities=29%  Similarity=0.495  Sum_probs=51.2

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.|.|.|.|.|++++..+.............+.|.|.+++.+|+|.|+|.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N   62 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASN   62 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEc
Confidence            78999999999999999999997765543332223445567999999999999999999999

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.91  E-value=2.6e-09  Score=97.36  Aligned_cols=74  Identities=22%  Similarity=0.359  Sum_probs=55.4

Q ss_pred             eecCCcEEEE---cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecCCC
Q psy12803        295 IFSSSPIVVR---EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADNVP  369 (902)
Q Consensus       295 i~~~~~v~v~---eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N~~  369 (902)
                      +..+.++.+.   +|++++|.|.+.|.|.|+|+|+|++..+..... ......+++|.|.++. .+|+|.|+|.|.|..
T Consensus         5 ~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~-~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~   82 (94)
T cd05848           5 VQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESD-YRYSLIDGNLIISNPSEVKDSGRYQCLATNSI   82 (94)
T ss_pred             EECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCC-ceEEeeCCeEEEccCCccCcCEEEEEEEEcCC
Confidence            3445555443   578999999999999999999998765533222 2333456789999985 699999999999933

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.91  E-value=1.6e-09  Score=96.79  Aligned_cols=68  Identities=25%  Similarity=0.503  Sum_probs=56.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+...   ......++.|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE---NRIEVEAGDLRITKLSLSDSGMYQCVAEN   72 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC---CeEEEeCCEEEEeeCCHHHCEEEEEEEEC
Confidence            456788999999999999999999999999987654321   12334567899999999999999999998

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.91  E-value=1.5e-09  Score=97.82  Aligned_cols=71  Identities=25%  Similarity=0.436  Sum_probs=55.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc-ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK-DSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|+.+.|.|.+.|+|.|.+.|++++..+....... .......+|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N   77 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN   77 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEEC
Confidence            3455779999999999999999999999999876543222111 1112335899999999999999999998

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.91  E-value=1.1e-09  Score=95.59  Aligned_cols=62  Identities=31%  Similarity=0.501  Sum_probs=49.4

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.|+|.|+|+|+|++..+............++.|.|.+++.+|+|.|+|.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N   62 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASN   62 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEc
Confidence            78999999999999999999997765432222122233456899999999999999999999

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.91  E-value=8.2e-09  Score=91.11  Aligned_cols=82  Identities=21%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++..+......  ......    .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~   77 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRI--GGYKVR----KKKWTLILESVVPSDSGKYTCIVENKYGSI   77 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCce--eEEEcc----CcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence            45778999999999999999999999887665432211  111111    123469999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy12803        459 KGSLILFE  466 (902)
Q Consensus       459 ~~s~~L~V  466 (902)
                      +.++.|.|
T Consensus        78 ~~~~~l~v   85 (85)
T cd05729          78 NHTYKVDV   85 (85)
T ss_pred             EEEEEEeC
Confidence            98888864

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.90  E-value=2.1e-09  Score=97.54  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=55.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|+++.|.|.+.|.|. .+.|+++++..+... .+.....++   +|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~-~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS-QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   77 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC-CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence            456688999999999999999998 899998665544332 233333333   899999999999999999999

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.89  E-value=7.7e-09  Score=90.61  Aligned_cols=67  Identities=18%  Similarity=0.252  Sum_probs=49.0

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC----CCCCeEEEEEEEeCCceeEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN----ISDFDTYRCISKNEVDIAKG  460 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~----~~DsG~YtC~A~N~~G~~~~  460 (902)
                      +.|.|.+.|+|.|.|+|++++..+......++.+. ...      ++|.|..+.    .+|+|.|+|.|+|.+|.+.+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-~~~------~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-RRS------GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-CCC------ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            47999999999999999998865533333344332 122      248888764    24799999999999998754

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.89  E-value=4.3e-09  Score=92.12  Aligned_cols=67  Identities=22%  Similarity=0.360  Sum_probs=49.8

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC----CCCeEEEEEEEeCCceeEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI----SDFDTYRCISKNEVDIAKG  460 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~----~DsG~YtC~A~N~~G~~~~  460 (902)
                      ++|.|.+.|.|.|+|+|++++..+......++... ...+      +|.|.+++.    +|+|.|+|+|+|.+|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~~g------~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-PDSG------TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-CCCC------EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            57999999999999999998776643333333322 2222      488888754    7999999999999998743

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.89  E-value=2.1e-09  Score=97.34  Aligned_cols=68  Identities=24%  Similarity=0.389  Sum_probs=54.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +.++.+.+|++|+|.|.+.|. .|.+.|+|++..+.. .. ......+++|+|.+++++|+|.|+|.|.|.
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNE   77 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CC-EEEeCCCCEEEECcCChhhCEEEEEEEEcC
Confidence            345789999999999999999 999999998765432 11 112234468999999999999999999993

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.89  E-value=5e-09  Score=95.38  Aligned_cols=73  Identities=32%  Similarity=0.565  Sum_probs=53.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc---CCccceeccCCcEEEEee-----eeecCceeEEeec
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL---GSWKDSAVASSTLNFTRI-----NRINMGAYMCLAD  366 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~~sL~I~~V-----t~~DsG~YtC~A~  366 (902)
                      +..+.++.+.+|++++|.|.+.|.|.|.+.|+|++..+...   .........++.+.+..+     +.+|+|.|+|.|.
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~   84 (100)
T cd07693           5 VEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAH   84 (100)
T ss_pred             EecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence            34566788999999999999999999999999987655431   112223334444443333     6899999999999


Q ss_pred             C
Q psy12803        367 N  367 (902)
Q Consensus       367 N  367 (902)
                      |
T Consensus        85 N   85 (100)
T cd07693          85 N   85 (100)
T ss_pred             c
Confidence            9

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.88  E-value=7.7e-09  Score=90.63  Aligned_cols=67  Identities=21%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC----CCCeEEEEEEEeCCceeEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI----SDFDTYRCISKNEVDIAKG  460 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~----~DsG~YtC~A~N~~G~~~~  460 (902)
                      +.|.|.+.|.|.|+|+|++++..+......++... ...+      +|.|..+..    .|.|.|+|.|.|.+|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g------~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTG------TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-CCCc------eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            57999999999999999998876633333333322 2222      388887764    3789999999999998754

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.87  E-value=1.4e-09  Score=94.83  Aligned_cols=59  Identities=29%  Similarity=0.414  Sum_probs=45.9

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceec--cCC--cEEEEeeeeecCceeEEeecCC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--ASS--TLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~~--sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      |.|.|.+.|.|.|.|+|+|++..+..... +....  ..+  +|.|.+++.+|+|.|+|.|.|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~-r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~   63 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTD-RISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNE   63 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCC-eEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcC
Confidence            57999999999999999997765543222 32222  222  7999999999999999999993

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.87  E-value=5.5e-09  Score=90.26  Aligned_cols=69  Identities=20%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      +.|.|.++|.|.|++.|++++..+.. ...++..  . .      .+|.|.+++.+|+|.|+|.|+|..........+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-~~~~~~~--~-~------~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAE-KCSRYHV--D-G------YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCC-CCcEEEe--C-C------CEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            47999999999999999999866543 2223322  1 1      1399999999999999999999876555444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.87  E-value=2.4e-09  Score=97.12  Aligned_cols=70  Identities=19%  Similarity=0.416  Sum_probs=55.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |..+++.+|+++.|.|.+.+.|.|.+.|+|++..+............+  .+|.|.+++.+|+|.|+|.|.|
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   79 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKN   79 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            456889999999999999999999999999876654332211111222  3799999999999999999998

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.87  E-value=8.2e-09  Score=89.88  Aligned_cols=73  Identities=18%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             EEEEEEeec-cCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        387 ATLECEVEA-FPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       387 v~L~C~a~g-~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      +.|.|.+.+ .|.+.+.|++++..+....  ..++.+....     ..++|.|.+++.+|+|.|+|+|.|..|.++.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKK-----KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCC-----cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 6888999999877664322  1222222111     2356999999999999999999999999888765


Q ss_pred             E
Q psy12803        464 L  464 (902)
Q Consensus       464 L  464 (902)
                      +
T Consensus        76 ~   76 (76)
T cd05895          76 V   76 (76)
T ss_pred             C
Confidence            3

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.87  E-value=2.3e-09  Score=96.08  Aligned_cols=73  Identities=26%  Similarity=0.574  Sum_probs=58.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+........... ...+|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   77 (90)
T PF07679_consen    4 TKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN   77 (90)
T ss_dssp             EEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred             EEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence            4456779999999999999999999999999998665544333222222 345899999999999999999987

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.84  E-value=3.9e-09  Score=96.03  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC---Cccceec---cCCcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAV---ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~---~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+....   ..+....   ..+.|+|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (96)
T cd05732           6 TYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASN   83 (96)
T ss_pred             eecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEe
Confidence            34556889999999999999999999999999764432211   1111111   224899999999999999999999

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.84  E-value=2e-08  Score=91.69  Aligned_cols=86  Identities=20%  Similarity=0.280  Sum_probs=60.6

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      ..++.+.+|+++.|.|.+.+.|.|.|.|++.+..++...      ..++.+.....    ...+|.|.+|+.+|+|.|+|
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~nV~~~D~G~YtC   79 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP----TELIISISNVQLSDEGEYTC   79 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC----ceEEEEECCCCcccCEEEEE
Confidence            356789999999999999999999999998876543211      12222211111    13469999999999999999


Q ss_pred             EEEeCCceeEEEEEEEe
Q psy12803        450 ISKNEVDIAKGSLILFE  466 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V  466 (902)
                      .+.. .-..++.+.|.|
T Consensus        80 ~~~t-~~~~~~~~~~~v   95 (95)
T cd05882          80 SIFT-MPVRTAKATVTV   95 (95)
T ss_pred             EEEe-eccccEEEEEEC
Confidence            9988 334445555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.84  E-value=5.5e-09  Score=95.80  Aligned_cols=75  Identities=27%  Similarity=0.334  Sum_probs=55.8

Q ss_pred             ceeecCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccC-------CcEEEEeeeee-cCceeEE
Q psy12803        293 EHIFSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVAS-------STLNFTRINRI-NMGAYMC  363 (902)
Q Consensus       293 ~~i~~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~-------~sL~I~~Vt~~-DsG~YtC  363 (902)
                      +.+..+..+.+.+|+++.|.|.+.|.|.| .|.|++++..+......+..+...       ++|+|.+++.+ |.|.|+|
T Consensus         3 p~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C   82 (98)
T cd05758           3 PIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC   82 (98)
T ss_pred             CeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence            34445566778999999999999999999 599999776544322222222211       37999999995 4999999


Q ss_pred             eecC
Q psy12803        364 LADN  367 (902)
Q Consensus       364 ~A~N  367 (902)
                      .|.|
T Consensus        83 ~A~N   86 (98)
T cd05758          83 TAWN   86 (98)
T ss_pred             EEEc
Confidence            9999

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.84  E-value=6.9e-09  Score=94.55  Aligned_cols=74  Identities=23%  Similarity=0.348  Sum_probs=55.1

Q ss_pred             eecCCcEEEEcC---CeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecCCC
Q psy12803        295 IFSSSPIVVREG---DNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADNVP  369 (902)
Q Consensus       295 i~~~~~v~v~eG---e~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N~~  369 (902)
                      +..|.++.+.+|   ++++|.|.+.|+|.|+++|++++..+..... ......+++|.|.++. .+|+|.|+|.|.|..
T Consensus         5 ~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~   82 (94)
T cd05850           5 EEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE-SRYTLVAGNLVINNPQKARDAGSYQCLAINRC   82 (94)
T ss_pred             EECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC-ceEEEECCeEEEccCCccCcCEEEEEEEEcCc
Confidence            345566666565   6899999999999999999998766532222 2233446789998865 599999999999933

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.84  E-value=7.6e-09  Score=90.93  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      |.++..|....+.+|++++|.|.+.+.|.+ .+.|++++..+..           ..      .+|.|.++ .+|+|.|+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----------~~------~~l~i~~~-~~dsG~Y~   62 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----------TT------NSYRIRAA-NNDSGEYR   62 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------cC------CeEEEeec-ccCCEEeE
Confidence            567788888899999999999999998864 7999998765421           11      23999999 99999999


Q ss_pred             EEEEeC
Q psy12803        449 CISKNE  454 (902)
Q Consensus       449 C~A~N~  454 (902)
                      |.|.|.
T Consensus        63 C~a~~~   68 (78)
T cd05752          63 CQTQGS   68 (78)
T ss_pred             EECCCC
Confidence            999886

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.83  E-value=2.6e-09  Score=92.75  Aligned_cols=59  Identities=25%  Similarity=0.450  Sum_probs=48.5

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++|.|.+.|.|.|.|+|+|++..+......+.....++.|.|.+++.+|+|.|+|.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N   59 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATN   59 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEEC
Confidence            47999999999999999998765433233344555677899999999999999999999

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.83  E-value=1.2e-08  Score=90.76  Aligned_cols=79  Identities=25%  Similarity=0.342  Sum_probs=63.1

Q ss_pred             EcCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      ..+..+.+.+|++++|.|.+.+ .|.+.+.|++++..+..  .  ..   ..      .+.|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~--~~---~~------~~~L~I~~v~~~DsG~Y~C~a~   72 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--R--AM---DF------NGILTIRNVQLSDAGTYVCTGS   72 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--c--cc---cc------CCEEEECCCCHHHCEEEEEEEe
Confidence            4566778999999999999975 68899999998765321  1  00   11      2349999999999999999999


Q ss_pred             eCCceeEEEEEEE
Q psy12803        453 NEVDIAKGSLILF  465 (902)
Q Consensus       453 N~~G~~~~s~~L~  465 (902)
                      |..|..++++.|+
T Consensus        73 n~~g~~~~~~~l~   85 (85)
T cd05754          73 NMLDTDEATATLY   85 (85)
T ss_pred             ccCCeEeEEEEEC
Confidence            9999999988873

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.83  E-value=5.9e-09  Score=94.87  Aligned_cols=70  Identities=17%  Similarity=0.365  Sum_probs=52.6

Q ss_pred             cCCcEEEEcC---CeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecCC
Q psy12803        297 SSSPIVVREG---DNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eG---e~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N~  368 (902)
                      .|.++.+.++   ..+.|.|.+.|+|.|+++|+|++..+.....  .....++.|.|.++. .+|+|.|+|.|.|.
T Consensus         7 ~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~--~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   80 (93)
T cd05849           7 QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND--RYSMVGGNLVINNPDKYKDAGRYVCIVSNI   80 (93)
T ss_pred             CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC--eEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence            3444555444   4899999999999999999998765432222  223456799999985 68999999999993

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.83  E-value=6.2e-09  Score=94.47  Aligned_cols=70  Identities=23%  Similarity=0.370  Sum_probs=53.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++++.+|+++.|.|.+.|.|. .+.|++.++..+...........   .++|+|.+++.+|+|.|+|.|.|
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence            355688999999999999999874 99999855554333222222221   24899999999999999999998

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.82  E-value=4e-09  Score=91.14  Aligned_cols=60  Identities=23%  Similarity=0.526  Sum_probs=50.4

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+++.|.|.+.|.|.|.++|+|++..+...  .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   60 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS--SRICIWPDGSLEILNVTKSDEGKYTCFAEN   60 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC--CCEEECCCCeEEEccCChhHCEEEEEEEEC
Confidence            789999999999999999999987654332  233445567899999999999999999999

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.82  E-value=4.1e-09  Score=97.39  Aligned_cols=69  Identities=19%  Similarity=0.183  Sum_probs=54.1

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-------eccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-------AVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-------~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ...+..|+.+.|.|.+.|.|.|.++|+|++..+.........       ....++|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            467889999999999999999999999987665432211111       011358999999999999999999993

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.82  E-value=2.4e-09  Score=93.34  Aligned_cols=59  Identities=27%  Similarity=0.416  Sum_probs=46.2

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccC--C--cEEEEeeeeecCceeEEeecCC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--S--TLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~--sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      |+|.|.+.|.|.|.|+|+|++..+... ..+.....+  +  +|.|.+++.+|+|.|+|.|.|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   63 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNE   63 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            579999999999999999987665432 223333222  2  6999999999999999999993

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.82  E-value=5.7e-09  Score=92.41  Aligned_cols=64  Identities=25%  Similarity=0.445  Sum_probs=51.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .++++.+.+|+++.|.|.+.|.|.| +|.|+|++..+..  .   .....+.|.|..+  .|+|.|+|+|+|
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~---~~~~~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--P---PAPSPSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--C---CCCCCCEEEEccc--cCCeEEEEEEEe
Confidence            4667889999999999999999999 7999998765432  1   1223468999887  588999999999

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.81  E-value=4.2e-09  Score=92.19  Aligned_cols=60  Identities=27%  Similarity=0.438  Sum_probs=46.8

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      |+|.|.+.|.|.|.|+|+|++..+.............++|.|.+++.+|+|.|+|.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   60 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA   60 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeC
Confidence            589999999999999999987654332221122234568999999999999999999993

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.81  E-value=7.3e-09  Score=93.41  Aligned_cols=62  Identities=31%  Similarity=0.643  Sum_probs=50.1

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccc------cCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPIT------LGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~------~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.+.|.|.+.|+|++...+.      ....+.....+++|+|.+++.+|+|.|+|.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N   68 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLN   68 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEc
Confidence            78999999999999999999998765421      112233444567899999999999999999999

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.80  E-value=6.8e-09  Score=92.23  Aligned_cols=67  Identities=21%  Similarity=0.420  Sum_probs=53.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.+|+++.|.|.+.|.|.|.+.|+|++..+.......  .......+|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN   72 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence            457899999999999999999999999876654322211  1122345799999999999999999998

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.80  E-value=5.2e-09  Score=90.08  Aligned_cols=58  Identities=26%  Similarity=0.525  Sum_probs=48.2

Q ss_pred             eEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        308 NVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       308 ~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +|+|.|.+.|.|.|.++|+|++..+....  +.....++.|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~--~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N   58 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSD--YFKIVKEHNLQVLGLVKSDEGFYQCIAEN   58 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCC--CEEEEecCCEEEEcCCcccCEEEEEEEEc
Confidence            47899999999999999999887654322  23344567899999999999999999999

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.80  E-value=2.7e-08  Score=89.44  Aligned_cols=83  Identities=23%  Similarity=0.341  Sum_probs=62.9

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      +..+.+.+|+++.|.|.+.+ |.+.+.|++++..+....  ..++...  .       ..|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~-------~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--E-------DGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--C-------CCEEEccCCHHHCEEEEEEEec
Confidence            45577899999999999987 888999999987654322  1222221  1       1299999999999999999987


Q ss_pred             C-CceeEEEEEEEeec
Q psy12803        454 E-VDIAKGSLILFESN  468 (902)
Q Consensus       454 ~-~G~~~~s~~L~V~~  468 (902)
                      . .+....++.|.|.+
T Consensus        73 ~~~~~~~~~~~l~V~~   88 (89)
T cd04979          73 HGFKQTLATYSLNVLE   88 (89)
T ss_pred             CccceeEeEEEEEEec
Confidence            5 45667888888864

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.80  E-value=9e-09  Score=89.03  Aligned_cols=61  Identities=30%  Similarity=0.599  Sum_probs=50.7

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+++.|.|.+.|.|.|.+.|+++++.++... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   61 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASN   61 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEEC
Confidence            7899999999999999999998666654433 233445567999999999999999999999

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.78  E-value=1.3e-08  Score=93.23  Aligned_cols=67  Identities=28%  Similarity=0.499  Sum_probs=50.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC---Cccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~---~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+..|++++|.|.+.|.|.|.++|++++..+....   ..+.....   .+.|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   84 (97)
T cd05869          12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASN   84 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEec
Confidence            344568999999999999999999999765432211   11111111   24799999999999999999999

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.78  E-value=9.5e-09  Score=89.25  Aligned_cols=60  Identities=27%  Similarity=0.552  Sum_probs=46.3

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCC-ccce-eccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGS-WKDS-AVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~-~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ++|.|.+.|.|.|.|+|+|++........ .+.. ...++.|.|.+++.+|+|.|+|.|.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~   62 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT   62 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcC
Confidence            47999999999999999998764332222 1222 224568999999999999999999993

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.77  E-value=1.1e-08  Score=90.09  Aligned_cols=65  Identities=17%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +++.+.+|+++.|.|.+.+. .+.+.|+|++..+....  +. ...+.+|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~--~~-~~~~~~L~I~~~~~~DsG~Y~C~a~n   66 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENN--RT-RITGEEVQIKDAVPRDSGLYACVTSS   66 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCc--eE-EEeCCEEEECCCChhhCEEEEEEEeC
Confidence            45778999999999999996 56899999876653322  22 22356899999999999999999988

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.77  E-value=1.2e-08  Score=92.92  Aligned_cols=69  Identities=22%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             CcEEEEcCCeEEEEEecCC-----CCCCceEEecCCCcccccC-CccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATG-----HPKPSIIWKTSENKPITLG-SWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-----~P~p~v~W~k~~~~~~~~~-~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..+.+|+.+.|.|.+.+     .|.+.|.|+|++..+.... ...+....++.|.|.+++.+|+|.|+|.+.|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N   81 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRN   81 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence            3467889999999999999     6899999999886532211 1122233467899999999999999999998

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.76  E-value=6e-09  Score=91.38  Aligned_cols=62  Identities=31%  Similarity=0.503  Sum_probs=48.3

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+++.|.|.+.|.|.|.|+|++++..+........... ..+.|+|.+++.+|+|.|+|.|.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   63 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN   63 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEe
Confidence            78999999999999999999997765432222111111 235899999999999999999998

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.76  E-value=1e-08  Score=91.85  Aligned_cols=68  Identities=16%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .|.+.++.+|+++.|.|.+.+ +.++++|++++..+.... . .....++.|.|.+++.+|+|.|+|.|.+
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~-~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e   69 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES-A-KYLLYRDGLLIFNASEADAGRYQCLSVE   69 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC-c-eEEEECCcEEEeCCCHHHCEEEEEEEEe
Confidence            356688999999999999875 678999999876654332 2 2344567899999999999999999977

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.76  E-value=3.8e-08  Score=89.90  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=60.6

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      +.++.+.+|+++.|+|.+.+.|.+.|.|++.+..++..      ...++.......    ...+|.|.+++.+|+|.|+|
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~----~~~sL~I~~v~~~DsG~Y~C   79 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISISDVSLSDEGQYTC   79 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCC----CcEEEEECcCCcccCEEEEE
Confidence            45788999999999999999999999998654433221      122333221111    12469999999999999999


Q ss_pred             EEEeCCceeEEEEEEEe
Q psy12803        450 ISKNEVDIAKGSLILFE  466 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V  466 (902)
                      .+.+.. ....++.|.|
T Consensus        80 ~~~t~~-~~~~~~~l~v   95 (95)
T cd07701          80 SLFTMP-VKTSKAYLTV   95 (95)
T ss_pred             EeEeec-CccEEEEEEC
Confidence            999853 3366666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.76  E-value=8.3e-09  Score=92.83  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=47.9

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceec----c---CCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV----A---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+.++|.|.+.|.|.+.++|+|++..+.... .+..+.    .   .++|.|.+++.+|+|.|+|.|.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N   68 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAIN   68 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEc
Confidence            7899999999999999999999775443322 222211    1   14799999999999999999999

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.76  E-value=3.8e-09  Score=89.96  Aligned_cols=53  Identities=17%  Similarity=0.289  Sum_probs=44.6

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ++|.|.+.|.|.|.++|+|++..+..       ....+.|.|.++..+|+|.|+|.|.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-------~~~~~~L~i~~v~~~D~G~YtC~a~N~   53 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISG-------KHSQHSLQIKDVTEASAGTYTLVLWNS   53 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcc-------cCCcCEEEECCCCHHHCEEEEEEEEEC
Confidence            57999999999999999998765421       123568999999999999999999994

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.76  E-value=6.9e-09  Score=89.30  Aligned_cols=57  Identities=25%  Similarity=0.523  Sum_probs=46.9

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.|.|.|.+.|+|++..+...  .......+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   57 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN--RTKKLNNNKTLQLDNVLESDDGEYVCTAEN   57 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC--ceeEEcCCCEEEEcccCHHhCEEEEEEEEc
Confidence            579999999999999999988765332  122334567999999999999999999999

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.75  E-value=8e-09  Score=89.98  Aligned_cols=58  Identities=28%  Similarity=0.379  Sum_probs=45.0

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceecc--CC--cEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SS--TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~--sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++|.|.+.|.|.|.|+|+|++..+... ..+.....  .+  +|.|.+++.+|+|.|+|.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   62 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVN   62 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            579999999999999999987654322 22222221  22  699999999999999999999

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.75  E-value=6.6e-09  Score=88.84  Aligned_cols=57  Identities=26%  Similarity=0.506  Sum_probs=46.8

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |.|.|.+.|.|.|.++|+|++..+...  .+.....++.|.|.+++.+|+|.|+|.|.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   57 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES--GKFHISPEGYLAIRDVGVADQGRYECVARN   57 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC--CCEEECCCCEEEECcCChhhCEEEEEEEEC
Confidence            579999999999999999977554322  233344567999999999999999999998

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.74  E-value=1e-08  Score=87.46  Aligned_cols=56  Identities=21%  Similarity=0.590  Sum_probs=46.3

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+|.|.+.|.|.|.+.|+|++..+..   .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   56 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEILDDKSLKIRNVTAGDEGSYTCEAEN   56 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC---CcEEEeeCCEEEECcCChhHCEEEEEEEEc
Confidence            57999999999999999998665422   223334667899999999999999999999

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.74  E-value=1.3e-08  Score=91.92  Aligned_cols=62  Identities=26%  Similarity=0.410  Sum_probs=45.5

Q ss_pred             CCeEEEEEecCCCCCCceEEecCC----CcccccCCcc----------ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSE----NKPITLGSWK----------DSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~----~~~~~~~~~~----------~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.|.|.|.|+|+|++    ..+.......          ........|.|.+|+.+|+|.|+|.|.|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   76 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN   76 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec
Confidence            689999999999999999999963    1111111100          0111234799999999999999999999

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.73  E-value=1.5e-08  Score=86.88  Aligned_cols=57  Identities=30%  Similarity=0.582  Sum_probs=45.2

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++|+|.|.+.|.|.|.|+|+|++..+...   .........|.|.++  +|+|.|+|.|.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~---~~~~~~~~~L~i~~~--~d~G~Y~C~A~N   57 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE---DEMPVGRNVLELTNI--YESANYTCVAIS   57 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc---cceecCccEEEEecc--ccCeeEEEEEEe
Confidence            789999999999999999999987654221   122234457999987  489999999998

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.73  E-value=6.7e-09  Score=89.47  Aligned_cols=56  Identities=20%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.|.|.|.+.|+|++..+...   .......++|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~~~~~~L~I~~v~~~D~G~YtC~a~N   56 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTKKSGHSLTIKDVTEEDAGNYTVVLTN   56 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---CEEEcCCCEEEECcCCHHHCEEEEEEEEc
Confidence            479999999999999999977654332   23344567899999999999999999998

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.73  E-value=2.8e-08  Score=90.41  Aligned_cols=69  Identities=28%  Similarity=0.405  Sum_probs=59.0

Q ss_pred             CCcEEEEcCCeEEEEEe-cCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCV-ATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~-a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N  367 (902)
                      .+.+.|.+|+.+.|.|. ..|.|.|.|.|++++...+. ...+.....++.|.|.+|+.+|+| .|.|.|.|
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEECCCceEEEEEEehhhCCCCeEEEEEc
Confidence            35688999999999997 68999999999987666554 345666667899999999999999 89999998

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.73  E-value=1.4e-08  Score=89.13  Aligned_cols=66  Identities=30%  Similarity=0.574  Sum_probs=52.6

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+..|+++.|.|.+.+.|.|.+.|+|++..+..... ........+|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   69 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI-GESRKKKWTLSLKNLKPEDSGKYTCHVSN   69 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc-ceecCceEEEEEccCChhhCEEEEEEEEc
Confidence            4567899999999999999999999998776543221 11222345899999999999999999998

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.72  E-value=2.6e-08  Score=90.72  Aligned_cols=69  Identities=20%  Similarity=0.336  Sum_probs=55.2

Q ss_pred             CcEEEEcCCeEEEEEec-CCCCCCceEEecCCCccc-ccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPI-TLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~-~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+.+.|.|.. .+.|.+.+.|++++.... .....+.....++.|.|.+|+.+|+|+|+|.|+|
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence            44778999999999975 568999999999876532 2223334444579999999999999999999998

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.72  E-value=7.3e-08  Score=86.43  Aligned_cols=70  Identities=26%  Similarity=0.452  Sum_probs=54.9

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .|.++.+.+|+++.|.|.+.+ |.+++.|++++..+... ..++.+..   +.      |.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~-~~r~~~~~---~~------L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE-SAKYLLYR---DG------LLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC-CceEEEEC---Cc------EEEeCCCHHHCEEEEEEEEec
Confidence            356788999999999999865 67899999988776543 23444322   22      999999999999999999887


Q ss_pred             C
Q psy12803        455 V  455 (902)
Q Consensus       455 ~  455 (902)
                      .
T Consensus        71 ~   71 (87)
T cd05873          71 S   71 (87)
T ss_pred             c
Confidence            4

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.72  E-value=8.1e-09  Score=89.25  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.|.|.|++.|+|++..+.. ... .....+.+|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~   57 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAE-KCS-RYHVDGYSLVIKDVTEEDAGIYTILLGI   57 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCC-CCc-EEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence            47999999999999999998765433 212 2233456899999999999999999988

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.72  E-value=3.2e-08  Score=86.98  Aligned_cols=61  Identities=16%  Similarity=0.342  Sum_probs=50.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .|+...+.+|++|+|.|.+.+.|. ..+.|+|++..+.         ..+++|+|.++ .+|+|.|+|.|.|
T Consensus         6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~   67 (78)
T cd05752           6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE---------TTTNSYRIRAA-NNDSGEYRCQTQG   67 (78)
T ss_pred             CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee---------ccCCeEEEeec-ccCCEEeEEECCC
Confidence            345578999999999999999875 4699999875431         23568999999 9999999999988

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.70  E-value=7.4e-08  Score=86.31  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=59.4

Q ss_pred             CceEEEEEEeeccCC--ceEEEEecCCeeeecCC-ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEE
Q psy12803        384 GRTATLECEVEAFPL--SVRYWEFIDGTLIEHDG-VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG  460 (902)
Q Consensus       384 G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~-~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~  460 (902)
                      |+++.|.|.+.+.+.  ..+.|.+.+..+..... .....  .........++|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence            788999999988664  47799877654321110 00000  01112345678999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy12803        461 SLILFESN  468 (902)
Q Consensus       461 s~~L~V~~  468 (902)
                      +..|.|.+
T Consensus        79 ~t~~~V~~   86 (86)
T cd05862          79 STIVIVHE   86 (86)
T ss_pred             cEEEEEeC
Confidence            99988863

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.70  E-value=2.4e-08  Score=91.27  Aligned_cols=70  Identities=19%  Similarity=0.394  Sum_probs=54.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC------ccceec----cCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS------WKDSAV----ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~------~~~~~~----~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..++++.+|++|.|.|.+.+.|.+.|.|+|.+..++....      .+....    .+.+|.|.+|+.+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4568899999999999999999999999998765432111      111111    235899999999999999999865

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.68  E-value=4.2e-08  Score=88.60  Aligned_cols=72  Identities=22%  Similarity=0.412  Sum_probs=52.8

Q ss_pred             ecCCcEEEEc---CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeee-ecCceeEEeecCC
Q psy12803        296 FSSSPIVVRE---GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR-INMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~e---Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~-~DsG~YtC~A~N~  368 (902)
                      ..+.++.+.+   |+++.|.|.+.|+|.|.++|+|++..+..... ......++.|.|.++.. +|+|.|+|.|.|.
T Consensus         6 ~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967           6 EQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD-SRYSLVGGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             eCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC-CCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence            3444454433   46899999999999999999997765422222 23344567899998875 9999999999993

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.67  E-value=2.2e-08  Score=90.28  Aligned_cols=62  Identities=23%  Similarity=0.369  Sum_probs=45.1

Q ss_pred             CCeEEEEEecCCCCCCceEEecCC---Ccccc-cCCcccee----------ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSE---NKPIT-LGSWKDSA----------VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~---~~~~~-~~~~~~~~----------~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.|.|.|.|+|+|++   +..+. ........          ...++|+|.+|+.+|+|.|+|.|.|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   76 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGN   76 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEe
Confidence            789999999999999999999853   11111 11100000          0124799999999999999999999

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.67  E-value=2e-08  Score=88.25  Aligned_cols=59  Identities=27%  Similarity=0.524  Sum_probs=46.2

Q ss_pred             EEEEEecCCCCCCceEEecCCCccccc------CCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+|.|.+.|.|.|.++|+|++......      ...+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   65 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSN   65 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEe
Confidence            589999999999999999975432211      12233334568999999999999999999999

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.67  E-value=2.7e-08  Score=87.02  Aligned_cols=59  Identities=25%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeee----ecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINR----INMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~----~DsG~YtC~A~N  367 (902)
                      ++|.|.+.|+|.|+|+|+|++..+......+... ..+++|.|.+++.    +|+|.|+|.|.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N   64 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN   64 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEc
Confidence            5799999999999999999876553322222222 3467999999864    799999999999

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.66  E-value=1.9e-08  Score=87.09  Aligned_cols=60  Identities=23%  Similarity=0.416  Sum_probs=46.5

Q ss_pred             eEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        308 NVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       308 ~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++.|.|.+.|.|.|.+.|+|++..+.......... .....|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   61 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN   61 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEEC
Confidence            47899999999999999999876653322211111 1245899999999999999999999

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.66  E-value=2e-08  Score=89.42  Aligned_cols=62  Identities=18%  Similarity=0.279  Sum_probs=46.8

Q ss_pred             CeEEEEEecCCCCCC--ceEEecCCCcccccCC-c----cceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        307 DNVRLRCVATGHPKP--SIIWKTSENKPITLGS-W----KDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       307 e~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~~-~----~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ++++|.|.+.+.|.|  ++.|+|++..+..... .    .......++|.|.+++.+|+|.|+|.|.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   69 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTV   69 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecC
Confidence            578999999999987  5689997765432221 1    112234678999999999999999999983

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.65  E-value=1.3e-08  Score=87.50  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=45.2

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.|.|.|.++|+|++..+...    .....+..|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~----~~~~~~~~L~I~~v~~~D~G~YtC~a~N   55 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN----HTFKRGVHLTIYEVTEKDAGNYTVVLTN   55 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC----CEEccCCEEEECcCCHHHCEEEEEEEEE
Confidence            479999999999999999987665322    1223456899999999999999999998

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.64  E-value=3e-08  Score=88.63  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=46.1

Q ss_pred             CeEEEEEecCCCCCC--ceEEecCCCcccccC-Cccc--e-e-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        307 DNVRLRCVATGHPKP--SIIWKTSENKPITLG-SWKD--S-A-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       307 e~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~-~~~~--~-~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++++|.|.+.|.|.|  .++|+|++..+.... ..+.  . . ...++|+|.+++.+|+|.|+|.|.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n   68 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQT   68 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEec
Confidence            578999999999987  589999776543221 1111  1 1 1346899999999999999999999

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.63  E-value=5.2e-08  Score=85.51  Aligned_cols=62  Identities=24%  Similarity=0.448  Sum_probs=47.2

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCC--c-ccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSEN--K-PITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~--~-~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.|.|.|.|+|+|+..  . ......   ........++|+|.+++.+|+|.|+|.|.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   68 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARN   68 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEec
Confidence            7899999999999999999999732  1 111111   112233456899999999999999999999

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.63  E-value=4.2e-08  Score=85.93  Aligned_cols=59  Identities=27%  Similarity=0.406  Sum_probs=44.9

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccce-eccCCcEEEEeeeee----cCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASSTLNFTRINRI----NMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-~~~~~sL~I~~Vt~~----DsG~YtC~A~N  367 (902)
                      +.|.|.+.|+|.|+|+|+|++..+......... ...+++|+|..+..+    |+|.|+|.|.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N   64 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARN   64 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEc
Confidence            579999999999999999987665322222222 234678999888753    78999999999

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.62  E-value=5.8e-08  Score=86.43  Aligned_cols=68  Identities=19%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+..+.+.+|++++|.|.+.+ .|.+.+.|++++..+..     .....++.|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----RAMDFNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----cccccCCEEEECCCCHHHCEEEEEEEecc
Confidence            3456678999999999999975 78899999998765311     12234578999999999999999999983

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.62  E-value=2.5e-08  Score=85.23  Aligned_cols=57  Identities=26%  Similarity=0.481  Sum_probs=45.6

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++|.|.+.|.|.|.+.|+|++..+.. . ..........|.|.+++.+|+|.|+|.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   57 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPA-D-RTKFENFNKTLKIDNVSEEDDGEYRCTASN   57 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCC-C-ceeEecCCCEEEECCCCHHHCEEEEEEEEe
Confidence            57999999999999999998765432 1 112223456899999999999999999999

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.62  E-value=5.3e-08  Score=88.98  Aligned_cols=70  Identities=14%  Similarity=0.324  Sum_probs=52.8

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc------CCcccee----ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSA----VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++++.+|+++.|.|.+.+.|.+.|.|++.+..++..      ...+...    ....+|+|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            45688999999999999999999999998744332211      1112221    1235899999999999999999976

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.62  E-value=4.1e-08  Score=87.64  Aligned_cols=62  Identities=13%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CeEEEEEecCC--CCCCceEEecCCCcccccC-Ccccee----ccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        307 DNVRLRCVATG--HPKPSIIWKTSENKPITLG-SWKDSA----VASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       307 e~v~L~C~a~G--~P~p~v~W~k~~~~~~~~~-~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +++.|.|.+.+  .+.+.|.|+|++..+.... ..+...    ..++.|+|.+++.+|+|+|+|.|+|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~   69 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTS   69 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcc
Confidence            57899999987  5588899999876664222 222222    24568999999999999999999993

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.61  E-value=7.4e-08  Score=86.62  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=53.5

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+..... ..........|.|.+++.+|+|.|+|.|.+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEec
Confidence            34577899999999999988 8889999998766533221 112233345799999999999999999987

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.61  E-value=1.4e-07  Score=85.60  Aligned_cols=78  Identities=15%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             eeeeecCceEEEEEEeec-----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        378 RVGVPIGRTATLECEVEA-----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g-----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      .+.+.+|.++.|.|...+     +|.|.+.|++++..+.. ....+  .  ..      +.|.|.+|+.+|+|.|+|+|.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~-~~~~~--~--~~------~~L~I~~v~~~DsG~YtC~~~   72 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG-DRKRF--V--KG------SKLLIQNVTEEDAGNYTCKLT   72 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC-CccEE--e--cC------CEEEEeeCChhhCEEEEEEEE
Confidence            456889999999997753     35789999998876643 22221  1  22      249999999999999999999


Q ss_pred             eCCceeEEEEEEEe
Q psy12803        453 NEVDIAKGSLILFE  466 (902)
Q Consensus       453 N~~G~~~~s~~L~V  466 (902)
                      |..+.....+...+
T Consensus        73 n~~~~~~~~~t~t~   86 (92)
T cd05757          73 FTHNGKQYNVTRTI   86 (92)
T ss_pred             ecCCCEEEEEEEEE
Confidence            99887765555444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.60  E-value=3.7e-07  Score=83.07  Aligned_cols=85  Identities=22%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      .++.+.+|++++|.|.+.+.+.+.+.|++.++.++..      ...++.......    ....|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA----NELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC----CeeEEEEccCCcccCEEEEEE
Confidence            4577899999999999999899999998654433211      112333321111    134699999999999999999


Q ss_pred             EEeCCceeEEEEEEEe
Q psy12803        451 SKNEVDIAKGSLILFE  466 (902)
Q Consensus       451 A~N~~G~~~~s~~L~V  466 (902)
                      +.+... .++++.|.|
T Consensus        81 ~~~~~~-~~~~~~~~v   95 (95)
T cd05717          81 LYTMPV-QTAKATVTV   95 (95)
T ss_pred             EecCCC-ceEEEEEEC
Confidence            998753 355555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.60  E-value=5.4e-08  Score=85.26  Aligned_cols=59  Identities=25%  Similarity=0.357  Sum_probs=44.1

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccce-eccCCcEEEEeeee----ecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASSTLNFTRINR----INMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-~~~~~sL~I~~Vt~----~DsG~YtC~A~N  367 (902)
                      +.|.|.+.|+|.|.|+|+|++..+......+.. ...+++|.|..+..    +|+|.|+|.|.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N   64 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARN   64 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence            479999999999999999987643222222222 23567999998742    479999999999

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.60  E-value=8.6e-08  Score=89.85  Aligned_cols=62  Identities=19%  Similarity=0.375  Sum_probs=47.3

Q ss_pred             cCCeEEEEEecCCCCCCceEEecCCCcccccCCccce--e-----ccCCcEEEEeee-eecCceeEEeecC
Q psy12803        305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS--A-----VASSTLNFTRIN-RINMGAYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~-----~~~~sL~I~~Vt-~~DsG~YtC~A~N  367 (902)
                      .|.+++|.|.+.|.|.+.++|+|++..+..... +..  .     ...++|+|.+++ .+|.|.|+|.|.|
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N   91 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHN   91 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEe
Confidence            468999999999999999999997755432221 111  1     113579999997 5999999999999

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.59  E-value=3e-08  Score=87.27  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=43.9

Q ss_pred             EEEecCCCCCCceEEecCCCcccccCCccce--e----ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        311 LRCVATGHPKPSIIWKTSENKPITLGSWKDS--A----VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       311 L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~----~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |.|.+.|+|.|+|+|+|++..+.........  .    ...++|.|.+++.+|+|.|+|+|+|
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N   65 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKN   65 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEc
Confidence            7899999999999999987765433211111  1    1234799999999999999999999

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.59  E-value=3.2e-08  Score=87.66  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=44.6

Q ss_pred             EEEEecCCCCCCceEEecCCCcccccCCcccee--------ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        310 RLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--------VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       310 ~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~--------~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .|.|.+.|+|.|.|+|+|++..+..........        ...+.|+|.+++.+|+|.|+|.|.|
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N   67 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASN   67 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEe
Confidence            378999999999999999877665433211111        1234799999999999999999999

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.58  E-value=3.5e-07  Score=82.87  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeee--e--cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE-
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLI--E--HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK-  452 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~--~--~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~-  452 (902)
                      .+.+.+|+++.|.|.. ..|.|.+.|++.+....  .  ....++..         ....|.|.+++.+|+|.|+|.|. 
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEc
Confidence            3568899999999997 48999999998543211  0  01122221         11239999999999999999997 


Q ss_pred             eCCceeEEEEEEEeec
Q psy12803        453 NEVDIAKGSLILFESN  468 (902)
Q Consensus       453 N~~G~~~~s~~L~V~~  468 (902)
                      |..+.....++|.|..
T Consensus        75 ~~~~~~~~~~~l~v~~   90 (91)
T cd05871          75 HSFSQTLAKYTLHVIE   90 (91)
T ss_pred             cCCeEEEEEEEEEEec
Confidence            5778788888888864

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG3515|consensus

Probab=98.57  E-value=1.9e-07  Score=111.39  Aligned_cols=163  Identities=20%  Similarity=0.222  Sum_probs=112.4

Q ss_pred             EEEcCCeEEEEEecCCC-CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        302 VVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      .+.+|+.|.|.|.+.++ |.+.+.|++.+....    .+.....+.+|....+.++..+.|.|+|.|             
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~   93 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILD   93 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeec
Confidence            68899999999999984 567899999876654    344555677899999999999999999999             


Q ss_pred             --CCCEEEEcCceeeeecCceEEEEEEee--ccCCceEEEEecCCeeeecCCceEEEeecCCCc-eeeEeEEEEeccCCC
Q psy12803        368 --VPPQILIRNRRVGVPIGRTATLECEVE--AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS-YQYIMQLNISNVNIS  442 (902)
Q Consensus       368 --~~P~i~~~p~~~~v~~G~~v~L~C~a~--g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s-~~~~stL~I~~V~~~  442 (902)
                        ++|.-...........+..+.+.|.+.  +.|.+.+.|..+...................++ +...+.|.+...+.+
T Consensus        94 v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka  173 (741)
T KOG3515|consen   94 VDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKA  173 (741)
T ss_pred             cccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEec
Confidence              333333333344566788999999664  557789999887665544332222211111111 122455899999999


Q ss_pred             CCeEEEEEEEeC---CceeEEEEEEEeec
Q psy12803        443 DFDTYRCISKNE---VDIAKGSLILFESN  468 (902)
Q Consensus       443 DsG~YtC~A~N~---~G~~~~s~~L~V~~  468 (902)
                      |.|+|+|.|.|.   .+.......+.|..
T Consensus       174 ~~g~~tC~A~nr~s~~l~~~~~~~i~v~~  202 (741)
T KOG3515|consen  174 DNGNYTCPANNRNSPGLSFAKQLTIIVEA  202 (741)
T ss_pred             CCceeEcccccccCccccccceeEeeccc
Confidence            999999999995   33344444454443

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.57  E-value=1.3e-07  Score=86.16  Aligned_cols=74  Identities=23%  Similarity=0.358  Sum_probs=55.7

Q ss_pred             ceeeeecCceEEEEEEe-eccCCceEEEEecCCeeee-cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        377 RRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      ..+.+.+|+.+.|.|.. .+.|.+.+.|++++..+.. .+.+++..  ..++.      |.|.+|+.+|+|.|+|.|+|.
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~--~~~G~------L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS--QTNGN------LYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe--CCCCc------EEEeecCHhhCceeEEEEEec
Confidence            34678999999999965 7889999999998765422 22333322  22333      999999999999999999998


Q ss_pred             Ccee
Q psy12803        455 VDIA  458 (902)
Q Consensus       455 ~G~~  458 (902)
                      +...
T Consensus        83 ~~~~   86 (96)
T cd05727          83 SSTK   86 (96)
T ss_pred             ccCC
Confidence            7544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.57  E-value=4.8e-07  Score=78.48  Aligned_cols=78  Identities=23%  Similarity=0.284  Sum_probs=58.9

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      |.+...+  ..+.+|++++|.|.+.+.|.+.+.|++++..+.....                 .|.|.+++.+|+|.|+|
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~y~C   62 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN-----------------GLFIPNVSPEDSGNYTC   62 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS-----------------EEEESSEEGGGTEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee-----------------eeeeeeeccccCEEEEE
Confidence            5555544  5689999999999999999999999987655432111                 16678899999999999


Q ss_pred             EEEeCCc-eeEEEEEEEe
Q psy12803        450 ISKNEVD-IAKGSLILFE  466 (902)
Q Consensus       450 ~A~N~~G-~~~~s~~L~V  466 (902)
                      .|.|..+ ..+.++.|.|
T Consensus        63 ~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   63 RASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCCeEeeeEEeeC
Confidence            9999664 4567777765

...

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.57  E-value=5.3e-08  Score=84.70  Aligned_cols=59  Identities=31%  Similarity=0.518  Sum_probs=46.6

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccCCccceeccC-CcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.|.|.|.+.|+|++..+......+.....+ ..|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N   60 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKN   60 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEc
Confidence            4799999999999999999877654333223333333 4799999999999999999998

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.55  E-value=1.5e-07  Score=76.96  Aligned_cols=60  Identities=32%  Similarity=0.595  Sum_probs=49.0

Q ss_pred             cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +|++++|.|.+.+.|.+.+.|++++..+.   ...........|.|.+++.+|+|.|+|.+.|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   60 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAEN   60 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence            58999999999989999999999765543   2223334566899999999999999999976

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.55  E-value=6.9e-08  Score=83.41  Aligned_cols=59  Identities=20%  Similarity=0.384  Sum_probs=45.5

Q ss_pred             EEEEEecCC-CCCCceEEecCCCcccccCCccce-e---ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDS-A---VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~-~---~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++|.|.+.| .|.|.+.|+|++..+......... .   ...++|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   64 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN   64 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEE
Confidence            479999999 999999999987665433221110 1   1245899999999999999999998

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.53  E-value=1.9e-07  Score=84.96  Aligned_cols=73  Identities=25%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             CceeeeecCceEEEEEE-eeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-EEEEEEEe
Q psy12803        376 NRRVGVPIGRTATLECE-VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-TYRCISKN  453 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~-a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~YtC~A~N  453 (902)
                      ...+.+.+|+.+.|.|. ..|+|.|.|.|++++...+. .+.++.+.  .++.      |.|.+|+.+|+| .|.|.|+|
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~--~~Gn------L~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMG--QNGN------LYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEEC--CCce------EEEEEEehhhCCCCeEEEEEc
Confidence            46688999999999997 69999999999976655443 34444443  2233      999999999999 89999999


Q ss_pred             CCce
Q psy12803        454 EVDI  457 (902)
Q Consensus       454 ~~G~  457 (902)
                      ....
T Consensus        81 ~~~~   84 (95)
T cd05845          81 PGLR   84 (95)
T ss_pred             cccc
Confidence            8643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.52  E-value=2.8e-07  Score=82.00  Aligned_cols=73  Identities=15%  Similarity=0.041  Sum_probs=54.4

Q ss_pred             eeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        378 RVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      ...+.+|++++|.|.+.. .+.+.+.|++++..+...         ..      .+.|.|.+++.+|+|.|+|.|.|..+
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~------~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HS------NSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CC------CceEEECccCHHHCEEEEEEEEeCCc
Confidence            446899999999999854 567789999987544210         01      12499999999999999999999987


Q ss_pred             ee-EEEEEEE
Q psy12803        457 IA-KGSLILF  465 (902)
Q Consensus       457 ~~-~~s~~L~  465 (902)
                      .. +..+.|.
T Consensus        73 ~~~s~~~~i~   82 (83)
T cd05753          73 DYSSEPVSIT   82 (83)
T ss_pred             eecCCCEEEE
Confidence            54 3444443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.51  E-value=3.1e-07  Score=74.96  Aligned_cols=63  Identities=25%  Similarity=0.440  Sum_probs=48.7

Q ss_pred             cCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      +|+++.|.|.+.+.|.+.+.|++++..+.  ....  .. ..      ...|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~--~~-~~------~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNR--LS-AS------GSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--CCCE--Ee-cC------CcEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999999999999999998776553  1111  11 11      23499999999999999999999765

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.49  E-value=4.4e-07  Score=82.65  Aligned_cols=81  Identities=22%  Similarity=0.179  Sum_probs=54.6

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEe----------ecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSIS----------DVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~----------~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +.+.+|++|+|.|.+.+.+.+.+.|++++.........++.+.          ...+....-...|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            4578999999999999999999999876644321111111100          000000011346999999999999999


Q ss_pred             EEEEeCCceeE
Q psy12803        449 CISKNEVDIAK  459 (902)
Q Consensus       449 C~A~N~~G~~~  459 (902)
                      |.|.|..++.+
T Consensus        82 C~v~~~~~~~~   92 (94)
T cd07690          82 CEVEDKKEEVE   92 (94)
T ss_pred             EEECCccceEE
Confidence            99999877653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00409 IG Immunoglobulin

Probab=98.48  E-value=1.6e-06  Score=74.89  Aligned_cols=83  Identities=30%  Similarity=0.377  Sum_probs=62.6

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEec-CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFI-DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+.  ...++.......     ..+|.|.++..+|+|.|+|.+.|..
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~   74 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSS   74 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCC
Confidence            345678999999999999988899999987 43332  122222222211     3469999999999999999999998


Q ss_pred             ceeEEEEEEEe
Q psy12803        456 DIAKGSLILFE  466 (902)
Q Consensus       456 G~~~~s~~L~V  466 (902)
                      +.....+.|.|
T Consensus        75 ~~~~~~~~l~V   85 (86)
T smart00409       75 GSASSTTTLTV   85 (86)
T ss_pred             CeEEEEEEEEE
Confidence            88877777766

>smart00410 IG_like Immunoglobulin like

Probab=98.48  E-value=1.6e-06  Score=74.89  Aligned_cols=83  Identities=30%  Similarity=0.377  Sum_probs=62.6

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEec-CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFI-DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+.  ...++.......     ..+|.|.++..+|+|.|+|.+.|..
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~   74 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSS   74 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCC
Confidence            345678999999999999988899999987 43332  122222222211     3469999999999999999999998


Q ss_pred             ceeEEEEEEEe
Q psy12803        456 DIAKGSLILFE  466 (902)
Q Consensus       456 G~~~~s~~L~V  466 (902)
                      +.....+.|.|
T Consensus        75 ~~~~~~~~l~V   85 (86)
T smart00410       75 GSASSTTTLTV   85 (86)
T ss_pred             CeEEEEEEEEE
Confidence            88877777766

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.48  E-value=1e-07  Score=84.67  Aligned_cols=62  Identities=24%  Similarity=0.359  Sum_probs=46.6

Q ss_pred             CCeEEEEEecCCC--CCCceEEecCCCcccccCCc--cce----eccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGH--PKPSIIWKTSENKPITLGSW--KDS----AVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~--P~p~v~W~k~~~~~~~~~~~--~~~----~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.+.  |.+.|+|++.+.........  ...    ....++|+|.+++.+|+|.|+|.|.|
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n   70 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASS   70 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEcc
Confidence            7899999999998  88999999876543211110  011    11235899999999999999999998

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.44  E-value=1.8e-07  Score=78.22  Aligned_cols=60  Identities=22%  Similarity=0.485  Sum_probs=45.3

Q ss_pred             CCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEee
Q psy12803        306 GDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       306 Ge~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A  365 (902)
                      |++|+|.|.+ .+.+...+.|+|++.................   .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 7788899999998876544322111111111   2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.43  E-value=4.1e-07  Score=80.92  Aligned_cols=61  Identities=21%  Similarity=0.308  Sum_probs=49.4

Q ss_pred             cEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...|.+|++|+|.|.+.. .+.+.+.|+|++..+..       ......|.|.+++.+|+|.|+|.|.+
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~   69 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGII   69 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEe
Confidence            346899999999999864 56778999998754321       12356899999999999999999998

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.42  E-value=2.6e-07  Score=80.44  Aligned_cols=59  Identities=20%  Similarity=0.335  Sum_probs=43.7

Q ss_pred             EEEEEecCC-CCCCceEEecCCCcccccCC--cccee---ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATG-HPKPSIIWKTSENKPITLGS--WKDSA---VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~--~~~~~---~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.+ .|.+.++|+|++..+.....  .+...   ...++|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N   65 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSS   65 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEe
Confidence            479999875 78899999998766543221  11111   1235799999999999999999998

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.41  E-value=5e-07  Score=79.61  Aligned_cols=67  Identities=27%  Similarity=0.483  Sum_probs=51.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce--eccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS--AVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+.+|+++.|.|.+.+.|.+.+.|+|++..+.........  ......|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n   72 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN   72 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEE
Confidence            56788999999999999999999999987654322111111  11224799999999999999999987

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.40  E-value=1.3e-06  Score=92.53  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             ceeeeecCceEEEEEEeeccCC-----------ceEEEEecCCeeeec-CCce--EE-EeecCCCceeeEeEEEEeccCC
Q psy12803        377 RRVGVPIGRTATLECEVEAFPL-----------SVRYWEFIDGTLIEH-DGVK--YS-ISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~-----------P~v~W~k~~~~l~~~-~~~~--~~-~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ..+.+.+|++|.|.|.+.++|.           +.|.|++.+...... .+.+  .. +......  ....+|.|.+++.
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~--~r~~~L~I~~v~~  107 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG--DRSENLWIGNVIN  107 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee--cCCCeEEECCCCh
Confidence            4567899999999999987653           489999986542211 1111  00 0000000  0123599999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|+|.|+|.|+|..+..+.++.|.|..
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~  134 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFDS  134 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEec
Confidence            999999999999999989999998854

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.40  E-value=2.2e-07  Score=82.85  Aligned_cols=62  Identities=19%  Similarity=0.344  Sum_probs=46.0

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCc--cce---eccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--KDS---AVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~--~~~---~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++++|.|.+.+.|.+.+.|++.+.........  ...   .....+|+|.+++.+|+|.|+|.|.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n   67 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHE   67 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEE
Confidence            789999999999999999999865432111000  011   11235899999999999999999987

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.38  E-value=6.4e-07  Score=81.53  Aligned_cols=71  Identities=14%  Similarity=0.375  Sum_probs=52.1

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc------CCcccee----ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSA----VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++++.+.+|++++|.|.+.+.+.+.+.|++.+..++..      ...+...    ....+|+|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            45688999999999999998888999998744432211      1112111    1234799999999999999999876


Q ss_pred             C
Q psy12803        368 V  368 (902)
Q Consensus       368 ~  368 (902)
                      .
T Consensus        84 ~   84 (95)
T cd05717          84 M   84 (95)
T ss_pred             C
Confidence            3

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.38  E-value=4.5e-07  Score=82.61  Aligned_cols=67  Identities=19%  Similarity=0.364  Sum_probs=49.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC------------Cccce------eccCCcEEEEeeeeecCceeE
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG------------SWKDS------AVASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~------------~~~~~------~~~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      +.+.+|++|+|.|.+++.+.+.+.|++++.......            ..+..      ...+.+|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            568899999999999999999999997653321100            00000      111236999999999999999


Q ss_pred             EeecC
Q psy12803        363 CLADN  367 (902)
Q Consensus       363 C~A~N  367 (902)
                      |.+.|
T Consensus        82 C~v~~   86 (94)
T cd07690          82 CEVED   86 (94)
T ss_pred             EEECC
Confidence            99987

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA03376 BARF1; Provisional

Probab=98.38  E-value=2.8e-06  Score=84.64  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=71.7

Q ss_pred             cEEEEcCCeEEEEEecC---CCCCCceEEecCC----CcccccC-----------Ccccee---ccCCcEEEEeeeeecC
Q psy12803        300 PIVVREGDNVRLRCVAT---GHPKPSIIWKTSE----NKPITLG-----------SWKDSA---VASSTLNFTRINRINM  358 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~---G~P~p~v~W~k~~----~~~~~~~-----------~~~~~~---~~~~sL~I~~Vt~~Ds  358 (902)
                      .+.+..||.+.|+|...   ..+...|+|+|.+    ...+...           +.+...   ..+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            46788999999999866   2356789999942    2221111           111111   1234899999999999


Q ss_pred             ceeEEeecC-------------CC-CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCe
Q psy12803        359 GAYMCLADN-------------VP-PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT  409 (902)
Q Consensus       359 G~YtC~A~N-------------~~-P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~  409 (902)
                      |+|+|..+.             +. ..+.+.........-+..++.|.+-|+|.|.++|.-+.+.
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~  164 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  164 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence            999999976             11 1122222111122256688999999999999999766553

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.37  E-value=1.1e-06  Score=74.87  Aligned_cols=74  Identities=34%  Similarity=0.418  Sum_probs=50.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.+...+.......+. ++|.|.+.+.| .+.+.|+ .......         ..........++|.|.++..+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~---------~~~~~~~~~~~~L~i~~v~~~~~g~y   69 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN---------SNSRGSSSSNSTLTISNVTRSDNGTY   69 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE---------EEEEEEEEEEEEEEESSCCGGGTEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee---------eeeeeccceeeEEEEccCCHHhCcEE
Confidence            36677766655444444 99999999988 8899997 1111000         01111123456799999999999999


Q ss_pred             EEEEEe
Q psy12803        448 RCISKN  453 (902)
Q Consensus       448 tC~A~N  453 (902)
                      +|+|+|
T Consensus        70 ~C~a~N   75 (75)
T PF13927_consen   70 TCIASN   75 (75)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999988

...

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.37  E-value=8.9e-07  Score=81.23  Aligned_cols=76  Identities=25%  Similarity=0.299  Sum_probs=54.4

Q ss_pred             CceeecCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceec-------cCCcEEEEeeeeec-CceeE
Q psy12803        292 SEHIFSSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAV-------ASSTLNFTRINRIN-MGAYM  362 (902)
Q Consensus       292 ~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~-------~~~sL~I~~Vt~~D-sG~Yt  362 (902)
                      +|.|.......+.+|++++|.|.+.+.|.|. |.|...+..+......+..+.       ..++|+|.++..+| .|.|.
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~   81 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN   81 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence            3445555668899999999999998888774 678776554333222233222       23489999998877 79999


Q ss_pred             EeecC
Q psy12803        363 CLADN  367 (902)
Q Consensus       363 C~A~N  367 (902)
                      |.|.|
T Consensus        82 C~a~N   86 (98)
T cd05898          82 CTAWN   86 (98)
T ss_pred             EEEEe
Confidence            99998

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.37  E-value=3e-07  Score=83.50  Aligned_cols=64  Identities=16%  Similarity=0.256  Sum_probs=50.9

Q ss_pred             EEEEcCCeEEEEEecCC-----CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATG-----HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-----~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+|+++.|.|.+.+     +|.|.+.|+|++..+.. .. . ....++.|.|.+|+.+|+|.|+|.|.|
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~-~~-~-~~~~~~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG-DR-K-RFVKGSKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC-Cc-c-EEecCCEEEEeeCChhhCEEEEEEEEe
Confidence            56889999999998754     36789999998765432 22 1 222677999999999999999999987

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.35  E-value=8.2e-07  Score=80.47  Aligned_cols=67  Identities=18%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCc--ccc-cCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PIT-LGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~~-~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.+.+|+++.|.|... .|.+.+.|+|.+..  ... ..........+++|.|.+++.+|+|.|+|.|.+
T Consensus         5 ~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           5 VVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             EEEEecCCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEc
Confidence            36789999999999974 78999999984321  111 011122233456799999999999999999975

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.29  E-value=1.8e-06  Score=78.73  Aligned_cols=81  Identities=16%  Similarity=0.075  Sum_probs=56.2

Q ss_pred             eeeeecCceEEEEEEe-ec----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        378 RVGVPIGRTATLECEV-EA----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a-~g----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      .+.+.+|.+..|.|.- ++    .+.++++|+|++..+.. ...++.... ..      +.|.|.+|..+|+|.|+|+|.
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~-~~------~~L~I~~v~~~D~G~YtC~~~   75 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLK-GS------TYLHIIDVSLNDSGYYTCKLQ   75 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecC-CC------CEEEEEEcChhhCEEEEEEEE
Confidence            3567789999999962 33    36779999998866543 333332211 11      139999999999999999999


Q ss_pred             eCCcee----EEEEEEEe
Q psy12803        453 NEVDIA----KGSLILFE  466 (902)
Q Consensus       453 N~~G~~----~~s~~L~V  466 (902)
                      |..+..    .+++.|.|
T Consensus        76 ~~~~g~~y~vtr~~~l~v   93 (95)
T cd05897          76 FTHEGKKYNITRIIKLRI   93 (95)
T ss_pred             EeeCCEEEEEEEEEEEEE
Confidence            987654    34555544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.26  E-value=1.3e-06  Score=72.89  Aligned_cols=63  Identities=30%  Similarity=0.414  Sum_probs=45.0

Q ss_pred             CceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        384 GRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       384 G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      |++++|.|.+ ...+...+.|++++..+......  .......   .....|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT--NRSTNSV---SSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE--EEEETTT---EEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCccee--Eeecccc---eeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 77788899999988765432211  1111111   11225999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.25  E-value=6e-06  Score=72.93  Aligned_cols=78  Identities=18%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             eEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEE
Q psy12803        386 TATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGSL  462 (902)
Q Consensus       386 ~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~  462 (902)
                      .+.|.|.+.+ .|.+.|+|++++..+..  .............+...+.|.|.....+|.|.|+|.|.|.....  +.++
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~   78 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDG--ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV   78 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccC--ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence            3689999987 58889999997765532  21111111122234556789999888889999999999986443  4555


Q ss_pred             EEE
Q psy12803        463 ILF  465 (902)
Q Consensus       463 ~L~  465 (902)
                      +|.
T Consensus        79 ~l~   81 (82)
T cd05759          79 TLD   81 (82)
T ss_pred             EEc
Confidence            553

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.22  E-value=5.2e-06  Score=73.13  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=54.7

Q ss_pred             eEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee---EEE
Q psy12803        386 TATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA---KGS  461 (902)
Q Consensus       386 ~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~---~~s  461 (902)
                      .++|+|.+. +.|+++|.|++++..+.....     .......+..+++|.|.....+|.+.|+|.|.|..+..   +.+
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~   75 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQ   75 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcc-----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEE
Confidence            378999885 779999999999887743211     11223344567789999999999999999999997653   444


Q ss_pred             EEEE
Q psy12803        462 LILF  465 (902)
Q Consensus       462 ~~L~  465 (902)
                      ..|.
T Consensus        76 ~~l~   79 (80)
T cd05885          76 YSLD   79 (80)
T ss_pred             EEEe
Confidence            4443

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.18  E-value=1.3e-05  Score=74.36  Aligned_cols=86  Identities=16%  Similarity=0.265  Sum_probs=57.4

Q ss_pred             cCceEEEEEEeeccC------CceEEEEecC-----Ce-eeecCCceEEEeecCC------CceeeEeEEEEeccCCCCC
Q psy12803        383 IGRTATLECEVEAFP------LSVRYWEFID-----GT-LIEHDGVKYSISDVDK------GSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P------~P~v~W~k~~-----~~-l~~~~~~~~~~~~~~~------~s~~~~stL~I~~V~~~Ds  444 (902)
                      .|++|+|.|.....+      ...|.|++..     .. +...............      ......++|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987654      4689999872     11 1111111111100000      0011246799999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeec
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|.|.+.+..+.....++|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999988889999998874

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>smart00410 IG_like Immunoglobulin like

Probab=98.17  E-value=6.5e-06  Score=71.10  Aligned_cols=68  Identities=29%  Similarity=0.606  Sum_probs=51.0

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++++...+.... +.....   ..+|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCC-cEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            346788999999999999988899999997233222111 111222   25899999999999999999986

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.17  E-value=6.5e-06  Score=71.10  Aligned_cols=68  Identities=29%  Similarity=0.606  Sum_probs=51.0

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|++++...+.... +.....   ..+|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCC-cEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            346788999999999999988899999997233222111 111222   25899999999999999999986

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.17  E-value=7.5e-06  Score=75.28  Aligned_cols=80  Identities=19%  Similarity=0.169  Sum_probs=57.1

Q ss_pred             eeeeecCceEEEEEEee-----------ccCCceEEEEecCCeeeecCC-----ceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        378 RVGVPIGRTATLECEVE-----------AFPLSVRYWEFIDGTLIEHDG-----VKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~-----------g~P~P~v~W~k~~~~l~~~~~-----~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ...+.+|+.|.|.|..-           ......+.|+|++..+.....     .+++..         ...|.|..+..
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~---------~~~Lwf~Pa~~   79 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE---------EDSIWFRPAEL   79 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe---------CCEEEEEeCCh
Confidence            35688999999999861           112347999998644433221     122211         12399999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +|+|.|+|+++|.-...+.++.|.|
T Consensus        80 eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          80 QDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             hhCeEEEEEECCCCcceEEEEEEEC
Confidence            9999999999999888888887765

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.14  E-value=2.3e-06  Score=74.11  Aligned_cols=58  Identities=29%  Similarity=0.589  Sum_probs=47.6

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+|++++|.|.+.++|.+.+.|++++..+..         ....|.|.+++.+|+|.|+|.|.+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~---------~~~~~~~~~~~~~~~g~y~C~~~~   66 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS---------SQNGLFIPNVSPEDSGNYTCRASN   66 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE---------ESSEEEESSEEGGGTEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee---------eeeeeeeeeeccccCEEEEEEEEe
Confidence            5689999999999999999999999996544321         112288889999999999999977

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.14  E-value=2.4e-05  Score=71.35  Aligned_cols=73  Identities=22%  Similarity=0.265  Sum_probs=54.4

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEecCCeeee------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIE------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      .++.+.+|+++.|+|.+.......+.|++.+..++.      ....++.......    ...+|.|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~----~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSS----NELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCC----CEEEEEECcCCcccCEEEEEE
Confidence            467899999999999999988778899877755431      1334444432121    134699999999999999999


Q ss_pred             EEe
Q psy12803        451 SKN  453 (902)
Q Consensus       451 A~N  453 (902)
                      +..
T Consensus        81 v~t   83 (95)
T cd05881          81 LYT   83 (95)
T ss_pred             EEc
Confidence            975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.13  E-value=2.7e-06  Score=77.58  Aligned_cols=66  Identities=14%  Similarity=0.177  Sum_probs=49.0

Q ss_pred             EEEEcCCeEEEEEec-C----CCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVA-T----GHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a-~----G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+|.+..|.|.- .    .++.++++|+|++..+.. ...+... .....|.|.+|+.+|+|.|+|+|.+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~   76 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQF   76 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEE
Confidence            457789999999972 2    346789999998765432 2222222 2346899999999999999999987

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.13  E-value=6.3e-06  Score=75.20  Aligned_cols=73  Identities=18%  Similarity=0.327  Sum_probs=53.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccc------cCCccceecc----CCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPIT------LGSWKDSAVA----SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~------~~~~~~~~~~----~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+++++.+|++|+|+|.+.+.....+.|++.+..++.      ....++....    ..+|+|.+++.+|+|.|.|.+..
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            3568899999999999999977777889877655431      1112222111    22699999999999999999876


Q ss_pred             CCC
Q psy12803        368 VPP  370 (902)
Q Consensus       368 ~~P  370 (902)
                      .++
T Consensus        84 ~p~   86 (95)
T cd05881          84 DPP   86 (95)
T ss_pred             ccC
Confidence            444

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.11  E-value=6.2e-06  Score=75.81  Aligned_cols=68  Identities=19%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             cEEEEcCCeEEEEEecC-----------CCCCCceEEecCCCcccccCC----ccceeccCCcEEEEeeeeecCceeEEe
Q psy12803        300 PIVVREGDNVRLRCVAT-----------GHPKPSIIWKTSENKPITLGS----WKDSAVASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~-----------G~P~p~v~W~k~~~~~~~~~~----~~~~~~~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      .+.+.+||.|.|.|...           ......+.|+|++........    ..+....+..|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            36789999999999971           112347999998644333221    124556678999999999999999999


Q ss_pred             ecC
Q psy12803        365 ADN  367 (902)
Q Consensus       365 A~N  367 (902)
                      +.|
T Consensus        89 ~rN   91 (104)
T cd05896          89 LRN   91 (104)
T ss_pred             ECC
Confidence            998

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.07  E-value=3.8e-05  Score=71.26  Aligned_cols=82  Identities=17%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             cCceEEEEEEeeccC------CceEEEEecCCe-----e-eecCC----------ceEEEeecCCCceeeEeEEEEeccC
Q psy12803        383 IGRTATLECEVEAFP------LSVRYWEFIDGT-----L-IEHDG----------VKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P------~P~v~W~k~~~~-----l-~~~~~----------~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      .|++|+|.|.....|      ...|.|++....     . .....          .++......    ....+|.|.+++
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I~~v~   76 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAH----DLDASLVITDLR   76 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCC----CCcEEEEEccCC
Confidence            488999999987663      357999986421     1 11110          111111000    113569999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        441 ISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .+|+|.|.|.+.+..+..+..+.|.|..
T Consensus        77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          77 LEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             hHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            9999999999999999999999998864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.07  E-value=1.8e-05  Score=70.64  Aligned_cols=79  Identities=23%  Similarity=0.300  Sum_probs=57.0

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE-eCC
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK-NEV  455 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~-N~~  455 (902)
                      .++.+.+|+++.|.|...+. .+.+.|++++..+..  +.++.....+         |.|.+++.+|+|.|.|.+. |.+
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~--~~r~~~~~~G---------LlI~~~~~~dsG~Y~C~s~E~gf   71 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA--QFSYRVGTDG---------LLILVTSPEHSGTYRCYSEEEGF   71 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCC--CcceEEeCCC---------CEEEECCHhhCEEEEEEEecCCC
Confidence            45778999999999999876 569999999887643  2333332222         8899999999999999985 333


Q ss_pred             ceeEEEEEEEee
Q psy12803        456 DIAKGSLILFES  467 (902)
Q Consensus       456 G~~~~s~~L~V~  467 (902)
                      -..-..+.|.|.
T Consensus        72 ~~~~~~y~l~v~   83 (85)
T cd05872          72 QQLVASYSLNVV   83 (85)
T ss_pred             eEEEEEEEEEEe
Confidence            344455555543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.06  E-value=1.8e-06  Score=73.61  Aligned_cols=63  Identities=37%  Similarity=0.676  Sum_probs=44.3

Q ss_pred             EEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+..++|.|.+.+.+ .+.++|+. . ...............++|.|.+++.+|.|.|+|.|.|
T Consensus        12 ~~~~~~~~l~C~~~~~~~~~~~~W~~-~-~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   12 VTSGGSVTLTCSAEGGPPPPSISWYD-S-NPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EETTEEEEEEEEESSEESSEEEEEET-E-EEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EeeceeEEEEEEEccccCCeEEEEEe-c-CCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            34444499999999977 88999991 1 1111111122333456899999999999999999986

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.01  E-value=6.5e-06  Score=73.71  Aligned_cols=62  Identities=26%  Similarity=0.414  Sum_probs=44.5

Q ss_pred             CCeEEEEEecCCCC--CCceEEecCCCcccccC--Cc-cce----eccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHP--KPSIIWKTSENKPITLG--SW-KDS----AVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P--~p~v~W~k~~~~~~~~~--~~-~~~----~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |+++.|.|.+.+.+  ...+.|.+.+.......  .. +..    ....+.|.|.+++.+|+|.|+|.|.|
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n   71 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASS   71 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEee
Confidence            78999999998754  55789988765432111  10 111    11245899999999999999999998

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.01  E-value=9.6e-06  Score=71.47  Aligned_cols=60  Identities=18%  Similarity=0.314  Sum_probs=45.2

Q ss_pred             eEEEEEecCC-CCCCceEEecCCCcccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        308 NVRLRCVATG-HPKPSIIWKTSENKPITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       308 ~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.|+|.+.+ +|.++|+|||++..+.....   ........++|.|.....+|.+.|+|+|.|
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n   64 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASH   64 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEC
Confidence            3789999875 99999999998877643211   111112335799999999999999999999

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.00  E-value=7.4e-06  Score=74.11  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ...|.+|++|+|.|... .+...+.|+|++...... . .........|.|.+|+.+|+|.|+|.+.+.
T Consensus        10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            45688999999999886 467789999987643211 1 111223457999999999999999999873

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.00  E-value=3.2e-05  Score=71.97  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=54.8

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCCe--e---ee-------cCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT--L---IE-------HDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~--l---~~-------~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ..+..+.+.+|++|+|.|.+.+.+...+.|++....  .   ..       ....++.+.....   .....|.|.+++.
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~~~~   79 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS---RKSSSLHISAAQL   79 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc---CCEEEEEECCCCH
Confidence            345677899999999999999878889999975421  0   10       0112232222111   1245699999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12803        442 SDFDTYRCISKNEV  455 (902)
Q Consensus       442 ~DsG~YtC~A~N~~  455 (902)
                      +|+|.|.|.+.+..
T Consensus        80 ~DsG~Y~C~~~~~~   93 (109)
T cd04983          80 SDSAVYFCALSESG   93 (109)
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.00  E-value=3.6e-05  Score=70.61  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=52.4

Q ss_pred             CceEEEEEEeeccC---CceEEEEecCCeee--e-cCC------------ceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        384 GRTATLECEVEAFP---LSVRYWEFIDGTLI--E-HDG------------VKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       384 G~~v~L~C~a~g~P---~P~v~W~k~~~~l~--~-~~~------------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      |++|+|.|......   ...|.|++......  . ...            .++....  ........+|.|.+++.+|+|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~G   78 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLK--DAIAEGSVALRIHNVRASDEG   78 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeec--ccccCCcEEEEEEcCChhhCE
Confidence            68899999986332   23688987653211  0 000            1111110  000112356999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEe
Q psy12803        446 TYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      .|+|.+.|..+..+..+.|.|
T Consensus        79 ~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          79 LYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEecCCcEEEEEEEEEE
Confidence            999999998888888888876

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.96  E-value=7e-05  Score=70.56  Aligned_cols=84  Identities=17%  Similarity=0.266  Sum_probs=56.2

Q ss_pred             cCceEEEEEEeeccC------------CceEEEEecCC----eeeecCCc----------eEEEeecCCCceeeEeEEEE
Q psy12803        383 IGRTATLECEVEAFP------------LSVRYWEFIDG----TLIEHDGV----------KYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P------------~P~v~W~k~~~----~l~~~~~~----------~~~~~~~~~~s~~~~stL~I  436 (902)
                      .|++|+|.|......            .+.|.|++...    .+......          ++.+....  ......+|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~--~~~~~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP--AIPSDATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC--CCCCCcEEEE
Confidence            489999999887442            46899997532    11111111          22221100  0112356999


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .+++.+|+|.|.|.+.+.+......+.|.|..
T Consensus        79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999999999888888888888864

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.95  E-value=1.4e-05  Score=71.41  Aligned_cols=65  Identities=18%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .++++.+|+++.|.|...++ .+.+.|++++..+...  . ........|.|.+++.+|+|.|.|.+.-
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~--~-r~~~~~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ--F-SYRVGTDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC--c-ceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence            35789999999999999985 6699999988765332  2 2333445588999999999999999854

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.92  E-value=1.6e-05  Score=74.01  Aligned_cols=71  Identities=24%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc---c-------cCCccceec-----cCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI---T-------LGSWKDSAV-----ASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~---~-------~~~~~~~~~-----~~~sL~I~~Vt~~DsG  359 (902)
                      .+..+.+.+|++|+|.|.+.+.+...+.|+|....  ..   .       ....+....     ...+|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            34568899999999999999878889999985421  10   0       011122121     2348999999999999


Q ss_pred             eeEEeecC
Q psy12803        360 AYMCLADN  367 (902)
Q Consensus       360 ~YtC~A~N  367 (902)
                      .|.|.+.+
T Consensus        84 ~Y~C~~~~   91 (109)
T cd04983          84 VYFCALSE   91 (109)
T ss_pred             EEEEEEec
Confidence            99999876

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.92  E-value=5.5e-05  Score=70.41  Aligned_cols=85  Identities=15%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCCe-----eeec-C-----------CceEEEeecCCCceeeEeEEEE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT-----LIEH-D-----------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~-----l~~~-~-----------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +.+.+..+.+|++|.|.|.....+...+.|+|....     +... .           +.+..  ...+      .+|.|
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~--~~~n------gSL~I   74 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET--IYPN------GSLLI   74 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE--EeCC------CcEEE
Confidence            344556688999999999654334448999985321     1110 0           01111  1112      24999


Q ss_pred             eccCCCCCeEEEEEEEeCC-ceeEEEEEEEe
Q psy12803        437 SNVNISDFDTYRCISKNEV-DIAKGSLILFE  466 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~-G~~~~s~~L~V  466 (902)
                      .+++.+|+|.|+|.+.|.. ...+..+.|.|
T Consensus        75 ~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          75 QNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             ecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            9999999999999999987 45567666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.91  E-value=4e-05  Score=69.30  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=53.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+.. .|.+|++|+|.|... .+...+.|++++.......     ..     .......|.|.+|+.+|+|.|+
T Consensus         2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~-----~~~~~~~f~i~~v~~~~~G~Y~   69 (91)
T cd05751           2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----PP-----EPQNKAKFFIPSMKREHAGRYR   69 (91)
T ss_pred             CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----cC-----CCceeEEEEccCCChhHCEEEE
Confidence            4667776653 588999999999885 6677889988776432110     00     0122456999999999999999


Q ss_pred             EEEEeC
Q psy12803        449 CISKNE  454 (902)
Q Consensus       449 C~A~N~  454 (902)
                      |.+.|.
T Consensus        70 C~~~~~   75 (91)
T cd05751          70 CYYRSG   75 (91)
T ss_pred             EEEECC
Confidence            999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.91  E-value=9.1e-05  Score=69.57  Aligned_cols=84  Identities=18%  Similarity=0.276  Sum_probs=55.8

Q ss_pred             cCceEEEEEEeeccC----------CceEEEEecCC--e--eeecCCc----------eEEEeecCCCceeeEeEEEEec
Q psy12803        383 IGRTATLECEVEAFP----------LSVRYWEFIDG--T--LIEHDGV----------KYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P----------~P~v~W~k~~~--~--l~~~~~~----------~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .|++|+|.|.....+          ...|.|++...  .  +......          ++.+....  .......|+|.+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~--~~~~~asL~I~~   78 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP--ENRGDASLEISR   78 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC--CCCCcEEEEECC
Confidence            488999999987654          25799998631  1  1111111          11111000  011235699999


Q ss_pred             cCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        439 VNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      ++.+|+|.|.|.+.......+..+.|.|..
T Consensus        79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999999999877888888888864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.90  E-value=2.4e-05  Score=71.74  Aligned_cols=69  Identities=25%  Similarity=0.348  Sum_probs=53.7

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceecc------CCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVA------SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~------~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.|.+|+++.|.|.+.+.|.|+ +.|.+++..+............      .+.|.|..+..+|+|.|+|.|.|
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N   86 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEEC
Confidence            347899999999999999999998 9999987654333221111111      14799999999999999999999

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.90  E-value=5.5e-05  Score=70.75  Aligned_cols=77  Identities=22%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCC--ee---eec-----------CCceEEEeecCCCceeeEeEEEEe
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL---IEH-----------DGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l---~~~-----------~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..+..+.+.+|++|+|.|.+.+ +.+.+.|++...  .+   ...           ...++.......    ...+|.|.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~   77 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL----TRSSLTIK   77 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC----CccEEEEC
Confidence            4566788999999999999988 778899998653  11   100           012222221111    23569999


Q ss_pred             ccCCCCCeEEEEEEEeCC
Q psy12803        438 NVNISDFDTYRCISKNEV  455 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~  455 (902)
                      +++.+|+|.|.|.+.+..
T Consensus        78 ~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          78 SAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CCChhhCEEEEEEeeCCC
Confidence            999999999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.88  E-value=0.0001  Score=69.79  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=53.8

Q ss_pred             CceeeeecCceEEEEEEeeccC----CceEEEEecC---Ce---eeec-CC------ceE--EEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP----LSVRYWEFID---GT---LIEH-DG------VKY--SISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~---~~---l~~~-~~------~~~--~~~~~~~~s~~~~stL~I  436 (902)
                      +..+.+.+|++++|.|.....+    ...|.|++..   ..   +... ..      .++  +..... ......++|.|
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~I   83 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASILI   83 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEEE
Confidence            5567899999999999986543    2469997531   11   1110 00      011  000000 00112456999


Q ss_pred             eccCCCCCeEEEEEEEeCCcee--EEEEEEE
Q psy12803        437 SNVNISDFDTYRCISKNEVDIA--KGSLILF  465 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~  465 (902)
                      .+++.+|+|.|+|.+.|..+..  ...+.|.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            9999999999999999976642  3455554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.86  E-value=7e-05  Score=67.28  Aligned_cols=77  Identities=17%  Similarity=0.075  Sum_probs=51.1

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeec-------CCce-------EEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEH-------DGVK-------YSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~-------~~~~-------~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      |++|+|.|.........|.|++........       ....       -+.....+      ..|.|.+++.+|+|.|+|
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~------~sL~I~~l~~~DsG~Y~c   74 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN------GSLLIQNLTKEDSGTYTL   74 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC------ceEEEccCCchhcEEEEE
Confidence            789999999887667799999876432110       0000       01111111      349999999999999999


Q ss_pred             EEEeCCce-eEEEEEEEe
Q psy12803        450 ISKNEVDI-AKGSLILFE  466 (902)
Q Consensus       450 ~A~N~~G~-~~~s~~L~V  466 (902)
                      .+....+. ....+.|.|
T Consensus        75 ~v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          75 QIISTNGVTENAKFFLRV   92 (92)
T ss_pred             EEEcCCCcEEEEEEEEEC
Confidence            99887643 356665543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.86  E-value=2.2e-05  Score=73.45  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=50.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccc--c------------cCCcccee--c--cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPI--T------------LGSWKDSA--V--ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~--~------------~~~~~~~~--~--~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.|.+.+ +...+.|+|...  .+.  .            ....+...  .  ...+|.|.+++.+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~   82 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE   82 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence            455688999999999999988 778899999643  111  0            00111111  1  2347999999999


Q ss_pred             cCceeEEeecC
Q psy12803        357 NMGAYMCLADN  367 (902)
Q Consensus       357 DsG~YtC~A~N  367 (902)
                      |+|.|.|.+.+
T Consensus        83 Dsg~Y~Ca~~~   93 (110)
T cd05899          83 DSAVYLCASSL   93 (110)
T ss_pred             hCEEEEEEeeC
Confidence            99999999865

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.84  E-value=4e-05  Score=69.31  Aligned_cols=75  Identities=24%  Similarity=0.318  Sum_probs=57.4

Q ss_pred             ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      ..|+.++|.|.+.++ |. ..|+|++++..+.... .........++.+...+.|.|......|.+.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~-~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGV-TTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCce-eccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999998 63 6899998876663322 113344566677888889999888888999999999997654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.84  E-value=3.2e-05  Score=71.97  Aligned_cols=68  Identities=19%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcc----c----c---------cCCccceeccCCcEEEEeeeeecCceeE
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKP----I----T---------LGSWKDSAVASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~----~----~---------~~~~~~~~~~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      +..+.+|++|.|.|.........++|+|.....    +    .         ..+.+.....+++|.|.+++.+|+|.|+
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence            345789999999997654445589999953211    0    0         1123444566789999999999999999


Q ss_pred             EeecC
Q psy12803        363 CLADN  367 (902)
Q Consensus       363 C~A~N  367 (902)
                      |.+.+
T Consensus        87 ~~v~~   91 (105)
T cd05774          87 LQTIT   91 (105)
T ss_pred             EEEEe
Confidence            99876

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.83  E-value=0.00019  Score=68.01  Aligned_cols=88  Identities=20%  Similarity=0.286  Sum_probs=55.0

Q ss_pred             CceeeeecCceEEEEEEeecc----CCceEEEEecCCe------eeec-CCc-----------eEEEeecCCCceeeEeE
Q psy12803        376 NRRVGVPIGRTATLECEVEAF----PLSVRYWEFIDGT------LIEH-DGV-----------KYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~----P~P~v~W~k~~~~------l~~~-~~~-----------~~~~~~~~~~s~~~~st  433 (902)
                      +..+.+..|++++|.|.....    +...|.|.+....      +... .+.           +.......   .....+
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~---~~~daS   81 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP---SRKDGS   81 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC---CcCeeE
Confidence            455778999999999998764    3458999543210      1111 111           11111111   123457


Q ss_pred             EEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEe
Q psy12803        434 LNISNVNISDFDTYRCISKNEVDIA--KGSLILFE  466 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V  466 (902)
                      |.|.+++.+|.|.|+|.+.|.-+..  ...+.|.|
T Consensus        82 I~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          82 IVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             EEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            9999999999999999999986543  35555543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.83  E-value=0.00013  Score=66.32  Aligned_cols=80  Identities=20%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             ceEEEEEEeeccC---CceEEEEecCCe---e---eecC-C------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        385 RTATLECEVEAFP---LSVRYWEFIDGT---L---IEHD-G------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       385 ~~v~L~C~a~g~P---~P~v~W~k~~~~---l---~~~~-~------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      ++|+|.|.....+   ...|.|++....   .   .... .      .+.++.......  ...+|.|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL--EDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC--CceEEEEccCCcccCEEEE
Confidence            4799999987654   447999987642   1   0000 0      001111011000  2357999999999999999


Q ss_pred             EEEEe-CCceeEEEEEEEe
Q psy12803        449 CISKN-EVDIAKGSLILFE  466 (902)
Q Consensus       449 C~A~N-~~G~~~~s~~L~V  466 (902)
                      |.+.+ ..|..+..+.|.|
T Consensus        79 C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          79 CEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEeCCCCcEEEEEEEEe
Confidence            99876 6788888888876

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.79  E-value=0.00015  Score=68.12  Aligned_cols=84  Identities=19%  Similarity=0.255  Sum_probs=55.5

Q ss_pred             cCceEEEEEEeeccC-------CceEEEEecC-----Cee--ee-cCC---------ceEEEeecCCCceeeEeEEEEec
Q psy12803        383 IGRTATLECEVEAFP-------LSVRYWEFID-----GTL--IE-HDG---------VKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P-------~P~v~W~k~~-----~~l--~~-~~~---------~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .|++|+|.|...-.|       .+.|.|.+..     ...  .. ...         .+..+..  .......++|.|.+
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~--~~~~~~~asL~i~n   78 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPG--YPKNRYNASLVLSR   78 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeec--CCCCCceEEEEECC
Confidence            378899999976433       3689998752     111  11 111         1111211  11112356799999


Q ss_pred             cCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        439 VNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      ++.+|+|.|.|.+.......+..+.|.|..
T Consensus        79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999999887788888888864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.77  E-value=2.8e-05  Score=71.61  Aligned_cols=69  Identities=23%  Similarity=0.356  Sum_probs=48.7

Q ss_pred             EEEcCCeEEEEEecCCC-CCCceEEecCCCc--c--cc-----------cCCccceec-----cCCcEEEEeeeeecCce
Q psy12803        302 VVREGDNVRLRCVATGH-PKPSIIWKTSENK--P--IT-----------LGSWKDSAV-----ASSTLNFTRINRINMGA  360 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~--~--~~-----------~~~~~~~~~-----~~~sL~I~~Vt~~DsG~  360 (902)
                      ++.+|++|+|.|.+... +...+.|+|....  .  +.           ....+....     ...+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57899999999999886 6778999986431  1  00           001111111     22389999999999999


Q ss_pred             eEEeecCCCC
Q psy12803        361 YMCLADNVPP  370 (902)
Q Consensus       361 YtC~A~N~~P  370 (902)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987443

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.76  E-value=0.00028  Score=65.27  Aligned_cols=91  Identities=23%  Similarity=0.225  Sum_probs=58.5

Q ss_pred             EEcCceeeeecCceEEEEEEee-ccCCceEEEEecCC-----eee-ecCC-----------ceEEEeecCCCceeeEeEE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDG-----TLI-EHDG-----------VKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~-----~l~-~~~~-----------~~~~~~~~~~~s~~~~stL  434 (902)
                      ...+..+.+.+|++|.|.|... ......+.|++...     .+. ....           .++.......   ....+|
T Consensus         5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL   81 (114)
T PF07686_consen    5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS---QNNFSL   81 (114)
T ss_dssp             EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT---TTEEEE
T ss_pred             EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc---CCeEEE
Confidence            3446678899999999999998 44566899998544     111 0011           0111111111   123569


Q ss_pred             EEeccCCCCCeEEEEEEEeC-CceeEEEEEEEe
Q psy12803        435 NISNVNISDFDTYRCISKNE-VDIAKGSLILFE  466 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~-~G~~~~s~~L~V  466 (902)
                      .|.+++.+|+|.|.|.+... .........|.|
T Consensus        82 ~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   82 TIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             EECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999999999887 333355555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.75  E-value=6e-05  Score=71.48  Aligned_cols=73  Identities=16%  Similarity=0.371  Sum_probs=49.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC----CCCceEEecC-C-------------Ccccc--cC--Cccce-----eccCCcEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH----PKPSIIWKTS-E-------------NKPIT--LG--SWKDS-----AVASSTLN  349 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~----P~p~v~W~k~-~-------------~~~~~--~~--~~~~~-----~~~~~sL~  349 (902)
                      .+..+.+..|++++|.|..+..    +...|+|.+. .             +....  ..  ..+..     ...+.+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            4556889999999999998653    3568999331 1             11111  00  01111     12456899


Q ss_pred             EEeeeeecCceeEEeecCCC
Q psy12803        350 FTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      |.+++.+|+|.|+|.+.|.+
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p  103 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPP  103 (116)
T ss_pred             EccCCcccCEEEEEEEEcCC
Confidence            99999999999999998843

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.75  E-value=0.00016  Score=64.03  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=49.4

Q ss_pred             EEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        387 ATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       387 v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      +.|.|.+.+. |.+.|.|++++..+....   ........+.+...+.|.+.....+|...|+|.|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK---LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce---eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999765 889999999887664221   2222233456777888888776667777999999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.74  E-value=4.5e-05  Score=68.55  Aligned_cols=62  Identities=16%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCccccc----------------CCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITL----------------GSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~----------------~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++|+|.|.........|.|+|........                -..+.....+++|.|.+++.+|+|.|+|.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEc
Confidence            789999999887677789999976442110                01223334567999999999999999998865

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.74  E-value=0.00011  Score=67.37  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=53.4

Q ss_pred             ecCceEEEEEEeec-cCCceEEEEecCCeeeecCC----ce-------E--EEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        382 PIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDG----VK-------Y--SISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       382 ~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~----~~-------~--~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|++|+|.|.... .....+.|++....+.....    ..       +  +.....     -...|.|.+++.+|+|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~-----~~~sL~I~~~~~~DsG~Y   76 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQ-----NDYSLQISNLKMEDAGSY   76 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecC-----CceeEEECCCchHHCEEE
Confidence            47999999998765 44568999987443332211    00       0  111111     124599999999999999


Q ss_pred             EEEEEeCCcee-EEEEEEEe
Q psy12803        448 RCISKNEVDIA-KGSLILFE  466 (902)
Q Consensus       448 tC~A~N~~G~~-~~s~~L~V  466 (902)
                      .|.+.+..|.. ...+.|.|
T Consensus        77 ~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          77 RAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEEEcCCCCeEEEEEEEEe
Confidence            99999887665 67777665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.71  E-value=6.8e-05  Score=71.01  Aligned_cols=71  Identities=18%  Similarity=0.384  Sum_probs=47.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC----CCceEEecC---CCc--cc-c---------cCC--ccce-----eccCCcEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTS---ENK--PI-T---------LGS--WKDS-----AVASSTLNF  350 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~---~~~--~~-~---------~~~--~~~~-----~~~~~sL~I  350 (902)
                      .+..+.+.+|++++|.|.....+    ...|.|++.   +..  .+ .         ...  .+..     ...+.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45678899999999999976432    346999752   111  11 0         000  0111     112457999


Q ss_pred             EeeeeecCceeEEeecC
Q psy12803        351 TRINRINMGAYMCLADN  367 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N  367 (902)
                      .+++.+|+|.|.|.+.|
T Consensus        84 ~~v~~~D~G~Y~C~v~~  100 (115)
T cd05880          84 WQLQPTDNGTYTCQVKN  100 (115)
T ss_pred             eeCChhhCEEEEEEEEe
Confidence            99999999999999987

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.71  E-value=5.7e-05  Score=66.65  Aligned_cols=59  Identities=25%  Similarity=0.392  Sum_probs=41.5

Q ss_pred             eEEEEEecCC-CCCCceEEecCCCcccccCCccceecc-------CCcEEEEeeeeecCceeEEeecC
Q psy12803        308 NVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA-------SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       308 ~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~-------~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.|.|.+.| .|.+.|+|+|++..+.. .........       .+.|.|.....+|.|.|+|.|.|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n   67 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDG-ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARN   67 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccC-ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcC
Confidence            3689999987 79899999997654422 211111111       13577877778889999999998

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.70  E-value=0.00034  Score=66.20  Aligned_cols=91  Identities=23%  Similarity=0.328  Sum_probs=54.4

Q ss_pred             cCceeeeecCceEEEEEEeeccC----CceEEEEecCC------eeeec-CC-------ceEE--EeecCCCceeeEeEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFP----LSVRYWEFIDG------TLIEH-DG-------VKYS--ISDVDKGSYQYIMQL  434 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~~------~l~~~-~~-------~~~~--~~~~~~~s~~~~stL  434 (902)
                      .|..+.+.+|++|+|.|......    ...|.|++...      .+... ..       .++.  .....+ .....++|
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL   82 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGN-PSRKDASI   82 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecC-CcCCeeEE
Confidence            35567889999999999886442    24699986432      11110 00       0110  000000 01123569


Q ss_pred             EEeccCCCCCeEEEEEEEeCCcee--EEEEEEEe
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIA--KGSLILFE  466 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V  466 (902)
                      +|.+++.+|+|.|.|.+.|.-...  ...+.|.|
T Consensus        83 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          83 VIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             EEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            999999999999999999875532  34455543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.69  E-value=0.00013  Score=67.86  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCC----eeee-cC-------CceEEEeecCCCceeeEeEEEEec
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDG----TLIE-HD-------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~----~l~~-~~-------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      +...+..+.+.+|++|+|.|.+.+.. ...+.|++...    ..+. ..       ..++....  .   .....|.|.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~---~~~~~L~I~~   77 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--S---GTDFTLTISR   77 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--c---CCEEEEEECC
Confidence            34556778899999999999997765 56899987642    1111 00       11222211  1   1234699999


Q ss_pred             cCCCCCeEEEEEEEeC
Q psy12803        439 VNISDFDTYRCISKNE  454 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~  454 (902)
                      ++.+|+|.|.|.+.+.
T Consensus        78 ~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          78 VEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CChHHCEEEEEEEeCC
Confidence            9999999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.67  E-value=8.8e-05  Score=68.91  Aligned_cols=71  Identities=18%  Similarity=0.358  Sum_probs=48.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-CCceEEecCCC--cc--cc-cC-------Cccceec---cCCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSEN--KP--IT-LG-------SWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~--~~--~~-~~-------~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      .+..+.+.+|++|+|.|.+.+.. ...+.|+|...  .+  +. ..       ..+....   ....|.|.+++.+|+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence            45567899999999999998755 57799998542  11  10 00       0111111   12369999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |.|.+.+
T Consensus        86 Y~Ca~~~   92 (106)
T cd04980          86 YYCQQYG   92 (106)
T ss_pred             EEEEEeC
Confidence            9999865

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.67  E-value=0.00014  Score=66.82  Aligned_cols=74  Identities=20%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             eeecCceEEEEEEeecc-CCceEEEEecCCe-----eee----------cCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        380 GVPIGRTATLECEVEAF-PLSVRYWEFIDGT-----LIE----------HDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~-----l~~----------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .+.+|++|+|.|.+... +...+.|++....     +..          ....++.+.....   ....+|.|.+++.+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS---KSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc---CCEEEEEECCCCHHH
Confidence            57899999999999876 6778999986431     110          0112222222111   123469999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy12803        444 FDTYRCISKNEVD  456 (902)
Q Consensus       444 sG~YtC~A~N~~G  456 (902)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999988765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG3515|consensus

Probab=97.67  E-value=0.00015  Score=87.19  Aligned_cols=234  Identities=16%  Similarity=0.162  Sum_probs=128.1

Q ss_pred             CCCccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecC--CCCCCceEEecCCCcccccCC
Q psy12803        260 GTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT--GHPKPSIIWKTSENKPITLGS  337 (902)
Q Consensus       260 G~pg~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~--G~P~p~v~W~k~~~~~~~~~~  337 (902)
                      ..+=.|.+.|...........+.+..+|.-.     ..........+..+.+.|.+.  +.|.+.+.|..+.........
T Consensus        71 ~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~-----~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~  145 (741)
T KOG3515|consen   71 VAELNCRAFNSVGMPSRCPMILDVDYPPACL-----PELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVN  145 (741)
T ss_pred             hhhhhhhhcccccCceecceeeccccCcccc-----ccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccC
Confidence            3344555544433322223333444444321     222334567889999999654  578899999987654333221


Q ss_pred             ---------ccceeccCCcEEEEeeeeecCceeEEeecC-------C------------CCEEEEcCc-eeeeecCceEE
Q psy12803        338 ---------WKDSAVASSTLNFTRINRINMGAYMCLADN-------V------------PPQILIRNR-RVGVPIGRTAT  388 (902)
Q Consensus       338 ---------~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------~------------~P~i~~~p~-~~~v~~G~~v~  388 (902)
                               ........+.|.+.....+|.|+|+|.|.|       .            ......... .+...+|+.+.
T Consensus       146 ~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~in  225 (741)
T KOG3515|consen  146 QRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTIN  225 (741)
T ss_pred             CcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEE
Confidence                     001113345789999999999999999988       1            111111111 25677899999


Q ss_pred             EEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        389 LECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       389 L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.+. +.|.+.++|+++.......+.     ...........++|.+..-...+.-...|.+.| ..  .++..+.+.
T Consensus       226 lvc~~~gg~P~~~~~w~~~s~~~~~~sl-----~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~--~~~~~tav~  297 (741)
T KOG3515|consen  226 LVCNAQGGNPSQQQTWYKDSRPQSESSL-----LSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL--AASQITAVQ  297 (741)
T ss_pred             EEehhhcCCcchhhhhccccccchhhhc-----ccCCCCCCcccccccccccccchhhhhhccccC-cc--ccceeeecc
Confidence            999775 669999999988766543210     111112223344465555555555677899999 22  223333333


Q ss_pred             cCCCCCCCCCCcceEEEEeCCCCCCccc-cCCCCcccCCCC
Q psy12803        468 NAKTPVPTEKEQEEVTVYNRAPKPEGQD-DLCPPQVLCPPC  507 (902)
Q Consensus       468 ~~p~~~~~~~~~~~v~~~~~~~~~~~~~-~~C~~~~v~~~c  507 (902)
                      .++...+....... ...++...+.|.. ..-++..++|..
T Consensus       298 ~~~~~~~Ist~~~~-ls~g~s~r~~c~~sss~p~~~i~w~~  337 (741)
T KOG3515|consen  298 VKPTAVPISTSDSG-LSSGRSARSSCVSSSSKPPAHIAWYK  337 (741)
T ss_pred             cccccccccCcccc-cccccccccceeccCCCCccceeeec
Confidence            33332222221111 3344445555544 233344566665

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.61  E-value=0.00012  Score=69.22  Aligned_cols=72  Identities=17%  Similarity=0.353  Sum_probs=47.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC----CCceEEecCCCc------ccc----------cCC--cccee-----ccCCcE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP----KPSIIWKTSENK------PIT----------LGS--WKDSA-----VASSTL  348 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~------~~~----------~~~--~~~~~-----~~~~sL  348 (902)
                      ..+..+.+.+|++|+|.|......    ...|.|++....      ++.          ...  .+...     ..+.+|
T Consensus         3 ~~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   82 (116)
T cd05715           3 YTPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASI   82 (116)
T ss_pred             ecCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEE
Confidence            345668899999999999886532    256999864320      110          000  00111     123579


Q ss_pred             EEEeeeeecCceeEEeecC
Q psy12803        349 NFTRINRINMGAYMCLADN  367 (902)
Q Consensus       349 ~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +|.+++.+|+|.|.|.+.|
T Consensus        83 ~I~~v~~~D~G~Y~C~v~~  101 (116)
T cd05715          83 VIHNLQFTDNGTYTCDVKN  101 (116)
T ss_pred             EEeeCCcccCEEEEEEEEe
Confidence            9999999999999999987

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.58  E-value=0.00016  Score=65.94  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      +......+|.+|++|+|.|.... ....+.|+|++........ ..........|.|..++.+|+|.|.|...
T Consensus         4 l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           4 LSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            33444566889999999998766 5567999998765321110 00001123378999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.57  E-value=0.00093  Score=63.24  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=34.6

Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .++|.|.+++.+|+|.|.|.+.+.....+..+.|.|..
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            46799999999999999999999999899999998864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.57  E-value=0.00045  Score=61.22  Aligned_cols=77  Identities=14%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             EEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce-eEEEEEE
Q psy12803        387 ATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI-AKGSLIL  464 (902)
Q Consensus       387 v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~-~~~s~~L  464 (902)
                      +.|.|.+.+. |.+.|.|++++..+.....    ........+...++|.|..-...|...|+|.|.|..-. .+.+..|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~----~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L   77 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKST----VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL   77 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCccc----ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence            6899999755 8889999998877743211    11122233557888999766666666999999997532 3555555


Q ss_pred             Eee
Q psy12803        465 FES  467 (902)
Q Consensus       465 ~V~  467 (902)
                      .|.
T Consensus        78 ~V~   80 (82)
T cd05883          78 EVQ   80 (82)
T ss_pred             EEE
Confidence            554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.57  E-value=0.00035  Score=63.80  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             eeeecCceEEEEEEeec-cCCceEEEEecCCe----eee-------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        379 VGVPIGRTATLECEVEA-FPLSVRYWEFIDGT----LIE-------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~----l~~-------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +.+.+|++|+|.|.... .....+.|++....    ++.       ....++.+.....   ....+|+|.+++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPD---NGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCC---CCEEEEEEcCCCHHHCEE
Confidence            45789999999998865 35667899976521    110       1112222221111   124569999999999999


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |.|.+.+..
T Consensus        79 Y~C~~~~~~   87 (98)
T cd05716          79 YWCGVGDDG   87 (98)
T ss_pred             EEEEcccCC
Confidence            999987754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.57  E-value=0.00025  Score=66.94  Aligned_cols=76  Identities=18%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             cCceeeeecCceEEEEEEeec--cCCceEEEEecCC--ee---ee--c----------CCceEEEeecCCCceeeEeEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEA--FPLSVRYWEFIDG--TL---IE--H----------DGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g--~P~P~v~W~k~~~--~l---~~--~----------~~~~~~~~~~~~~s~~~~stL~  435 (902)
                      .+..+.+.+|++|+|.|.+.+  .+.+.+.|++...  .+   ..  .          ...++.+.....   .....|+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~   80 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG---KSTSTLT   80 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC---CCEEEEE
Confidence            355677889999999999987  6778999998631  11   10  0          012222221111   0245699


Q ss_pred             EeccCCCCCeEEEEEEEe
Q psy12803        436 ISNVNISDFDTYRCISKN  453 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N  453 (902)
                      |.+++.+|+|.|.|.+..
T Consensus        81 I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          81 IQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEECCHHHCEEEEEEEec
Confidence            999999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.55  E-value=0.00012  Score=69.13  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             CCcEEEEcCCeEEEEEecCC--CCCCceEEecCCC--cc---cc--c----------CCccceec-----cCCcEEEEee
Q psy12803        298 SSPIVVREGDNVRLRCVATG--HPKPSIIWKTSEN--KP---IT--L----------GSWKDSAV-----ASSTLNFTRI  353 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~--~~---~~--~----------~~~~~~~~-----~~~sL~I~~V  353 (902)
                      +..+.+.+|++|+|.|.+.+  .+.+.+.|+|...  .+   +.  .          ...+....     ....|+|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44578899999999999877  6778899999532  11   00  0          01112211     1237999999


Q ss_pred             eeecCceeEEeecC
Q psy12803        354 NRINMGAYMCLADN  367 (902)
Q Consensus       354 t~~DsG~YtC~A~N  367 (902)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999998754

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.55  E-value=0.00055  Score=63.06  Aligned_cols=78  Identities=15%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             eEEEEEEeeccC---CceEEEEecCCe-----eee-c--CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        386 TATLECEVEAFP---LSVRYWEFIDGT-----LIE-H--DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       386 ~v~L~C~a~g~P---~P~v~W~k~~~~-----l~~-~--~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|+|.|.....+   ...|.|++....     +.. .  ..        .+.+.....   ....+.|+|.+++.+|+|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~---~~~~~sL~I~nv~~sD~Gt   78 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN---PIADGALILRNAVQADEGK   78 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC---CCCceEEEEecCccccceE
Confidence            689999887544   447899985321     110 0  00        111111110   0123469999999999999


Q ss_pred             EEEEEEe-CCceeEEEEEEEe
Q psy12803        447 YRCISKN-EVDIAKGSLILFE  466 (902)
Q Consensus       447 YtC~A~N-~~G~~~~s~~L~V  466 (902)
                      |.|.+.+ ..|..++.+.|.|
T Consensus        79 Y~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          79 YKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEEEeCCCCCeeeEEEEEe
Confidence            9999998 6777788888776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.52  E-value=0.00067  Score=60.32  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=49.7

Q ss_pred             EEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCC-CceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        387 ATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDK-GSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       387 v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~-~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      +.|.|.+.+. |.+.|+|++++..+...  .. .+....+ +++...++|.|......|...|+|.|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~--~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGA--PT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCc--ce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6899999876 88999999988665332  11 2223333 46777888998777777778999999997643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.49  E-value=0.00078  Score=62.06  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=32.0

Q ss_pred             eEEEEeccCCCCCeEEEEEEEe-CCceeEEEEEEEe
Q psy12803        432 MQLNISNVNISDFDTYRCISKN-EVDIAKGSLILFE  466 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N-~~G~~~~s~~L~V  466 (902)
                      ++|.|.+++.+|.|.|+|.+.| ..|..+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            5699999999999999999999 7888888888877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.46  E-value=0.00066  Score=61.84  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      |.+...+. ..|.+|++|+|.|.... +...+.|++++......     ..  ......+..+.|.|..++.+|+|.|+|
T Consensus         2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~-----~~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C   72 (94)
T cd05711           2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL-----HL--YEKHHGGFQASFPLGPVTPAHAGTYRC   72 (94)
T ss_pred             CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce-----ec--ccccCCeEEEEEEecCCCcccCEEEEE
Confidence            55666554 34889999999997765 55679999887553110     00  000112345679999999999999999


Q ss_pred             EEE
Q psy12803        450 ISK  452 (902)
Q Consensus       450 ~A~  452 (902)
                      ...
T Consensus        73 ~~~   75 (94)
T cd05711          73 YGS   75 (94)
T ss_pred             EEE
Confidence            875

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.45  E-value=0.0017  Score=58.07  Aligned_cols=73  Identities=18%  Similarity=0.302  Sum_probs=50.4

Q ss_pred             CceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        384 GRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       384 G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      |+.+.|+|.+ .++|.|.|.|+.++..+..  ...........+.+...++|.+..-...+...++|.|.+..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVA--SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECE--EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceee--eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            6799999976 5779999999988877611  11112233445555667889887655566679999999976543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>KOG4729|consensus

Probab=97.44  E-value=0.00011  Score=76.93  Aligned_cols=118  Identities=7%  Similarity=-0.167  Sum_probs=95.5

Q ss_pred             CCCCCcccceeeecCCceEeeccCccc---cCCCcceeeeccceecCCCCC-CCCCceEEEecCCCCCceEeecChhhhc
Q psy12803        543 GLPNRTLDCQVYAVGKPVFHKSTSMKK---ESSGKPVDVIFGAWMKDPHPT-SGNSEKFWMTTDSDPTHLNEYKDKDMFK  618 (902)
Q Consensus       543 ~~~~r~~~C~l~~v~~Pv~~~~~~~~~---~~~~~~~~~~~G~W~~D~~~~-~~~~~~~~~~~~~~~~~~~ey~~~~~~~  618 (902)
                      +.-+..++|+.+++.+-++..++.++.   +....+.++.-+||.+|+... +....+.|  ..+.-..+-++..++++.
T Consensus       121 KYLev~Y~Cvp~~~~~kt~~~p~~~~~~~~~~~~~~~e~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  198 (265)
T KOG4729|consen  121 KYLEVQYGCVPYAFTEKTFCTPSPTDPPRSEIRLECREGRRLAVYSAVMKTSPQKDPETE--IRHECVSSVLPQLLRQCH  198 (265)
T ss_pred             hheEEEeccCccccccceEecCCCCCCccCcccchhhhcccccccccccccCCCCcccCC--CCceeecccchhhhhccc
Confidence            334456899999999999999888665   445566688999999999862 12122222  344555677899999999


Q ss_pred             ccCCcceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCc
Q psy12803        619 SDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS  662 (902)
Q Consensus       619 ~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~  662 (902)
                      +.+..+.++++...+++|.++|.+.+++|++..++++++|+.++
T Consensus       199 ~~~~ct~~~~~~~~~~~~~~~~~~~~~~n~e~~~~~~~~~~~t~  242 (265)
T KOG4729|consen  199 AKEGCTLKSDGIKGHCRHGHLHKVYVTVTEEIFSEEAIKGELPS  242 (265)
T ss_pred             ccCCceeecCCccccccccceeEEEEEecccccchhhhccccCC
Confidence            99999999999999999999999999999999999999999986

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.41  E-value=0.00012  Score=67.13  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             EcCCeEEEEEecCC-CCCCceEEecCCCcccccC-------------C--ccceecc-CCcEEEEeeeeecCceeEEeec
Q psy12803        304 REGDNVRLRCVATG-HPKPSIIWKTSENKPITLG-------------S--WKDSAVA-SSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~-------------~--~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      .+|++|+|.|.... .....+.|+|....++...             .  .+..... +.+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            37999999998865 5566899998643222111             0  1111222 3689999999999999999886


Q ss_pred             C
Q psy12803        367 N  367 (902)
Q Consensus       367 N  367 (902)
                      +
T Consensus        82 ~   82 (97)
T cd05775          82 T   82 (97)
T ss_pred             c
Confidence            6

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.41  E-value=0.00023  Score=65.08  Aligned_cols=66  Identities=17%  Similarity=0.322  Sum_probs=45.3

Q ss_pred             EEEcCCeEEEEEecCCC--CCCceEEecCCCc--cc--c-c------C-Cccceec---cCCcEEEEeeeeecCceeEEe
Q psy12803        302 VVREGDNVRLRCVATGH--PKPSIIWKTSENK--PI--T-L------G-SWKDSAV---ASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~--~~--~-~------~-~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      .|.+|++|+|.|.+.+.  ....+.|+|....  +.  . .      . ..+....   ...+|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998775  5567999986532  11  0 0      0 0111111   123699999999999999998


Q ss_pred             ecC
Q psy12803        365 ADN  367 (902)
Q Consensus       365 A~N  367 (902)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.40  E-value=0.001  Score=67.16  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             ceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeec--CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        377 RRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEH--DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~--~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      ..+.|.+|++|+|.|... +...+.|.|+|....+..-  .+        .++......    ...++|+|.+|+.+|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s----~~~StItIknVt~sDeG   98 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS----FNESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC----CCcceEEEEeCChhhCe
Confidence            356789999999999985 5567889998875433211  11        112110000    12467999999999999


Q ss_pred             EEEEEEEe-CCc-eeEEEEEEEeecCC
Q psy12803        446 TYRCISKN-EVD-IAKGSLILFESNAK  470 (902)
Q Consensus       446 ~YtC~A~N-~~G-~~~~s~~L~V~~~p  470 (902)
                      .|+|...- ..| ..+...-|.|....
T Consensus        99 cY~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987         99 CYTCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEEEEecCCCCCceeEEEEEEEchh
Confidence            99998754 346 67788888887543

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.38  E-value=0.0011  Score=60.69  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=50.7

Q ss_pred             CceEEEEEEeeccCCc-eEEEEecCCe----eeec---CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        384 GRTATLECEVEAFPLS-VRYWEFIDGT----LIEH---DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P-~v~W~k~~~~----l~~~---~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      |++|+|.|........ .|.|++....    +...   ..        .+......    ....++|.|.+|+.+|+|.|
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~nv~~~D~G~Y   76 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL----GLNSTSITIWNVTLEDEGCY   76 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC----CCCccEEEEeCCceeeeEEE
Confidence            7899999987654332 6999875431    1100   00        11111111    11245699999999999999


Q ss_pred             EEEEEe-CCceeEEEEEEEe
Q psy12803        448 RCISKN-EVDIAKGSLILFE  466 (902)
Q Consensus       448 tC~A~N-~~G~~~~s~~L~V  466 (902)
                      +|.+.+ ..|..+..+.|.|
T Consensus        77 ~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          77 KCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEEEeCCCCCeeeEEEEEE
Confidence            999864 5677777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.38  E-value=0.0014  Score=58.25  Aligned_cols=78  Identities=19%  Similarity=0.109  Sum_probs=54.8

Q ss_pred             eeeeecCceEEEEEEeeccC--CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        378 RVGVPIGRTATLECEVEAFP--LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      +-.+..|++++|+|+....+  .+.|+|.-.++....       .......      +|.+.++...|+|.++|.+.-..
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~k------tL~~~qv~~qdSG~WtC~V~~~~   74 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKK------TLNLVQLGPNDSGTWDCIVSVNS   74 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCcc------EEEeceeCcccCCEEEEEEEECc
Confidence            34688999999999996644  449999765544321       1111222      39999999999999999997655


Q ss_pred             ceeEEEEEEEeec
Q psy12803        456 DIAKGSLILFESN  468 (902)
Q Consensus       456 G~~~~s~~L~V~~  468 (902)
                      -.....+.|.|..
T Consensus        75 k~~~~~~~V~Vl~   87 (88)
T cd07694          75 SEKTLKLDIKVLA   87 (88)
T ss_pred             eEEEEEeeEEEEe
Confidence            5556677776653

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.36  E-value=0.00035  Score=70.43  Aligned_cols=69  Identities=22%  Similarity=0.356  Sum_probs=49.5

Q ss_pred             CcEEEEcCCeEEEEEecC-CCCCCceEEecCCCccccc--------CC-cccee-----ccCCcEEEEeeeeecCceeEE
Q psy12803        299 SPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITL--------GS-WKDSA-----VASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~--------~~-~~~~~-----~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      ..++|.+|++|+|.|... +...+.|+|+|.+..+..-        .. ..+..     ..+.+|+|.+|+++|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            347899999999999985 6567889999975432211        00 11111     145689999999999999999


Q ss_pred             eecC
Q psy12803        364 LADN  367 (902)
Q Consensus       364 ~A~N  367 (902)
                      ....
T Consensus       103 ~F~t  106 (189)
T PHA02987        103 IFNT  106 (189)
T ss_pred             EEEe
Confidence            8754

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.35  E-value=0.00061  Score=62.26  Aligned_cols=70  Identities=23%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             eeecCceEEEEEEeecc--CCceEEEEecCCe--e---eecC-------CceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        380 GVPIGRTATLECEVEAF--PLSVRYWEFIDGT--L---IEHD-------GVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~~--l---~~~~-------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      .+.+|++|+|.|.+...  ....+.|++....  +   ....       ..++......     ....|+|.+++.+|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-----NTASLTISGAQTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCChhhCE
Confidence            47899999999998765  5667999876531  1   1100       1123222111     2456999999999999


Q ss_pred             EEEEEEEeC
Q psy12803        446 TYRCISKNE  454 (902)
Q Consensus       446 ~YtC~A~N~  454 (902)
                      .|.|.+.+.
T Consensus        77 ~Y~C~~~~~   85 (98)
T cd04984          77 DYYCQVWDS   85 (98)
T ss_pred             EEEEEEccC
Confidence            999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=97.35  E-value=0.0009  Score=54.42  Aligned_cols=66  Identities=26%  Similarity=0.321  Sum_probs=46.5

Q ss_pred             EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      +.|.|.+.+.+...+.|++.+.........   ............+.|.|.+++.+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT---RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE---EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999998788899998876544221111   111222233456679999999999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.34  E-value=0.00092  Score=63.12  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             EEcCceeeeecCceEEEEEEeecc-CCceEEEEecCC--e--eee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDG--T--LIE--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~--~--l~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ...+..+.+.+|++|+|.|..... ....+.|++...  .  ++.        ....++.+.....   ....+|+|.++
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~~   79 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKA---QKSISLTISAL   79 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEecc---CCEEEEEECCC
Confidence            345667789999999999998754 456799997532  1  111        0112333321111   11356999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        80 ~~~Dsg~Y~C~~~~   93 (116)
T cd07706          80 QLEDSAKYFCALST   93 (116)
T ss_pred             CHHHCEEEEEEEEC
Confidence            99999999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.34  E-value=0.0016  Score=59.68  Aligned_cols=78  Identities=23%  Similarity=0.400  Sum_probs=51.0

Q ss_pred             ceEEEEEEeeccC-CceEEEEecCC---e-eeecC---C--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        385 RTATLECEVEAFP-LSVRYWEFIDG---T-LIEHD---G--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       385 ~~v~L~C~a~g~P-~P~v~W~k~~~---~-l~~~~---~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      ++++|.|.....+ ...|.|.+...   . +....   +        .+......    ....++|.|.+++.+|+|.|+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~----~~~d~sl~i~nv~~~D~G~Y~   76 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNY----SLLDATIMLENVGFSDIGVYI   76 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCC----CCCccEEEEeCCCccccEEEE
Confidence            3689999987543 34789987532   1 11100   1        11122110    112457999999999999999


Q ss_pred             EEEEe-CCceeEEEEEEEe
Q psy12803        449 CISKN-EVDIAKGSLILFE  466 (902)
Q Consensus       449 C~A~N-~~G~~~~s~~L~V  466 (902)
                      |.+.+ ..|..++++.|.|
T Consensus        77 C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          77 CKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEEeCCCCCeeEEEEEEE
Confidence            99754 6899999998887

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.33  E-value=0.001  Score=59.21  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             EEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        387 ATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       387 v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      ++|.|.+.+ +|...|+|++++..+..  ..........++++...++|.|..-...|...|+|.|.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~--~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKD--VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcC--ceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999986 57789999998877532  222223334456777888899986666667799999998754

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.31  E-value=0.00022  Score=66.23  Aligned_cols=63  Identities=27%  Similarity=0.452  Sum_probs=43.0

Q ss_pred             cCCeEEEEEecCCCC------CCceEEecCC--C--c-cc-c-cC-------Cc--cce----eccCCcEEEEeeeeecC
Q psy12803        305 EGDNVRLRCVATGHP------KPSIIWKTSE--N--K-PI-T-LG-------SW--KDS----AVASSTLNFTRINRINM  358 (902)
Q Consensus       305 eGe~v~L~C~a~G~P------~p~v~W~k~~--~--~-~~-~-~~-------~~--~~~----~~~~~sL~I~~Vt~~Ds  358 (902)
                      .|++|+|.|.....+      ...|.|+|..  .  . .+ . ..       ..  +..    ...+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987643      5689999962  1  1 11 0 00       00  111    12346899999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+.+
T Consensus        81 G~Y~C~v~~   89 (106)
T cd05714          81 GRYRCEVID   89 (106)
T ss_pred             EEEEEEEEc
Confidence            999999876

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.30  E-value=0.00047  Score=62.97  Aligned_cols=67  Identities=15%  Similarity=0.210  Sum_probs=46.3

Q ss_pred             EEEEcCCeEEEEEecCC-CCCCceEEecCCCcc----cc-------cCCccceec-----cCCcEEEEeeeeecCceeEE
Q psy12803        301 IVVREGDNVRLRCVATG-HPKPSIIWKTSENKP----IT-------LGSWKDSAV-----ASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~----~~-------~~~~~~~~~-----~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      +.+.+|++|+|.|.... .....+.|+|.....    +.       ....+....     ...+|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            56889999999999775 456679999865321    10       001112221     12379999999999999999


Q ss_pred             eecC
Q psy12803        364 LADN  367 (902)
Q Consensus       364 ~A~N  367 (902)
                      .+..
T Consensus        82 ~~~~   85 (98)
T cd05716          82 GVGD   85 (98)
T ss_pred             Eccc
Confidence            8865

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.28  E-value=0.0013  Score=60.53  Aligned_cols=82  Identities=17%  Similarity=0.248  Sum_probs=54.1

Q ss_pred             EEEEcCceeeeecCceEEEEEEeec-cCCce--EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-E
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEA-FPLSV--RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-T  446 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P~--v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~  446 (902)
                      .+.+.+....+.+|+.++|+|.+.+ .|.+.  |.|++.+..+...   .+..  ........+++|.+. +..+|.| .
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~---~~~~--~~~~~~~~~stlt~~-~~r~D~g~~   76 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ---PFGD--NTKSPVNAPATITIT-VDREDHGAN   76 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc---eecc--ccCCCceeEEEEEEe-cchhhCCcE
Confidence            3455556667899999999999975 57776  7999887766331   1111  111112345678876 4455555 9


Q ss_pred             EEEEEEeCCcee
Q psy12803        447 YRCISKNEVDIA  458 (902)
Q Consensus       447 YtC~A~N~~G~~  458 (902)
                      |+|.|.+.++..
T Consensus        77 ~sC~A~l~l~~~   88 (100)
T cd05755          77 FSCETELDLRPE   88 (100)
T ss_pred             EEEEEEeccCcc
Confidence            999999987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.28  E-value=0.00044  Score=65.15  Aligned_cols=63  Identities=19%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             cCCeEEEEEecCCCC------------CCceEEecCCC--c--cccc--------CC--cccee------ccCCcEEEEe
Q psy12803        305 EGDNVRLRCVATGHP------------KPSIIWKTSEN--K--PITL--------GS--WKDSA------VASSTLNFTR  352 (902)
Q Consensus       305 eGe~v~L~C~a~G~P------------~p~v~W~k~~~--~--~~~~--------~~--~~~~~------~~~~sL~I~~  352 (902)
                      .|++|+|.|......            .+.|.|+|...  +  ++..        ..  .+...      ..+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987532            46899998532  1  1110        01  12222      1456899999


Q ss_pred             eeeecCceeEEeecC
Q psy12803        353 INRINMGAYMCLADN  367 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N  367 (902)
                      ++.+|+|.|.|.+.+
T Consensus        81 l~~sDsG~Y~C~V~~   95 (112)
T cd05900          81 LRSNDSGTYRCEVMH   95 (112)
T ss_pred             cccccCEEEEEEEec
Confidence            999999999998754

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.23  E-value=0.00033  Score=64.77  Aligned_cols=70  Identities=23%  Similarity=0.423  Sum_probs=48.6

Q ss_pred             CCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCc----ccc--cC-----------Cccceecc-----CCcEEEEeee
Q psy12803        298 SSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENK----PIT--LG-----------SWKDSAVA-----SSTLNFTRIN  354 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~----~~~--~~-----------~~~~~~~~-----~~sL~I~~Vt  354 (902)
                      +..+.+.+|++|.|.|... ......+.|++....    .+.  ..           ..+.....     +.+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            5568899999999999988 456668999995441    111  00           01111111     2369999999


Q ss_pred             eecCceeEEeecC
Q psy12803        355 RINMGAYMCLADN  367 (902)
Q Consensus       355 ~~DsG~YtC~A~N  367 (902)
                      .+|+|.|.|.+..
T Consensus        88 ~~DsG~Y~C~v~~  100 (114)
T PF07686_consen   88 PSDSGTYFCQVST  100 (114)
T ss_dssp             GGGEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEE
Confidence            9999999998755

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.19  E-value=0.0004  Score=64.41  Aligned_cols=63  Identities=24%  Similarity=0.400  Sum_probs=42.4

Q ss_pred             cCCeEEEEEecCCCC------CCceEEecCCCc-----c-c-cc-------C--Cccceec----cCCcEEEEeeeeecC
Q psy12803        305 EGDNVRLRCVATGHP------KPSIIWKTSENK-----P-I-TL-------G--SWKDSAV----ASSTLNFTRINRINM  358 (902)
Q Consensus       305 eGe~v~L~C~a~G~P------~p~v~W~k~~~~-----~-~-~~-------~--~~~~~~~----~~~sL~I~~Vt~~Ds  358 (902)
                      .|++|+|.|.....|      ...|.|+|....     . . ..       .  ..+....    .+.+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999876643      456999996421     0 0 00       0  0122211    134899999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+.+
T Consensus        81 G~Y~C~v~~   89 (106)
T cd05877          81 GRYRCEVID   89 (106)
T ss_pred             EEEEEEEEe
Confidence            999999865

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.18  E-value=0.00053  Score=62.77  Aligned_cols=62  Identities=18%  Similarity=0.349  Sum_probs=40.6

Q ss_pred             CCeEEEEEecCCC---CCCceEEecCCCcccc---c------------CCcccee------ccCCcEEEEeeeeecCcee
Q psy12803        306 GDNVRLRCVATGH---PKPSIIWKTSENKPIT---L------------GSWKDSA------VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       306 Ge~v~L~C~a~G~---P~p~v~W~k~~~~~~~---~------------~~~~~~~------~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      |++|+|.|.....   -...|.|+|.......   .            -..+...      ..+.+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999998632   1236889886532110   0            0012111      1234799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      +|.+.|
T Consensus        81 ~C~v~~   86 (100)
T cd05713          81 TCFFQS   86 (100)
T ss_pred             EEEEec
Confidence            999987

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.17  E-value=0.0016  Score=60.61  Aligned_cols=71  Identities=24%  Similarity=0.331  Sum_probs=45.6

Q ss_pred             eeecCceEEEEEEeeccC-CceEEEEecCCe---------eeecC-----------CceEEEeecCCCceeeEeEEEEec
Q psy12803        380 GVPIGRTATLECEVEAFP-LSVRYWEFIDGT---------LIEHD-----------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~---------l~~~~-----------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .+.+|++|+|.|.+.... ...+.|++....         +....           ..++.+.....   .....|+|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD---SSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC---CCEEEEEECC
Confidence            578999999999987643 457999976532         00000           11222111111   1134699999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|+|.|.|...+
T Consensus        79 ~~~~Dsg~YyCa~~~   93 (107)
T cd07700          79 VKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCHHHCEEEEEeEcC
Confidence            999999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.16  E-value=0.00046  Score=62.81  Aligned_cols=61  Identities=16%  Similarity=0.298  Sum_probs=41.1

Q ss_pred             CeEEEEEecCCCC---CCceEEecCCCc---ccc---c-------C--Cccceec----cCCcEEEEeeeeecCceeEEe
Q psy12803        307 DNVRLRCVATGHP---KPSIIWKTSENK---PIT---L-------G--SWKDSAV----ASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       307 e~v~L~C~a~G~P---~p~v~W~k~~~~---~~~---~-------~--~~~~~~~----~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      ++|+|.|.....+   ...|.|+|....   .+.   .       .  ..+....    .+.+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999987643   447999996542   000   0       0  1111111    345899999999999999998


Q ss_pred             ecC
Q psy12803        365 ADN  367 (902)
Q Consensus       365 A~N  367 (902)
                      +.+
T Consensus        81 v~~   83 (98)
T cd05718          81 FAT   83 (98)
T ss_pred             EEe
Confidence            764

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.16  E-value=0.0021  Score=55.90  Aligned_cols=69  Identities=25%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             eEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        386 TATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       386 ~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .++|.|.+.++ |. ..|.|++++..+.. ...........++++...+.|.|......+...|+|+|....
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~-~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTS-GVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCC-CEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            37899999987 54 58999987765322 111112223466788889999998777777789999997753

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.15  E-value=0.0026  Score=57.72  Aligned_cols=81  Identities=21%  Similarity=0.365  Sum_probs=52.3

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+......   ++.++|.|.+.++ |.. .++|++++..+..... ........++.+...+.|.|..-   +...
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~-~~~~~~~~d~ty~~~s~l~v~~~---~~~~   74 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVE-SGEILPNGDGTYQLWVTLEVPPE---DKAR   74 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECccccc-ccceEECCCCeEEEEEEEEECCC---CCCE
Confidence            455555443322   7789999999996 544 8999888753322111 11222345567777778887653   7789


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|.+.+..-
T Consensus        75 ytC~V~H~~~   84 (93)
T cd07698          75 YSCRVEHSGL   84 (93)
T ss_pred             EEEEEEeCCC
Confidence            9999988643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.10  E-value=0.00064  Score=64.21  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCC--cccc----------cCCccceec-----cCCcEEEEeeeeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSEN--KPIT----------LGSWKDSAV-----ASSTLNFTRINRINM  358 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~--~~~~----------~~~~~~~~~-----~~~sL~I~~Vt~~Ds  358 (902)
                      .+..+.+.+|++|+|.|..... ....+.|+|...  .+..          ....+....     ...+|+|.+++.+|+
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            3556889999999999998753 456799998532  1110          001122221     123799999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+..
T Consensus        85 g~Y~C~~~~   93 (116)
T cd07706          85 AKYFCALST   93 (116)
T ss_pred             EEEEEEEEC
Confidence            999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.08  E-value=0.00083  Score=61.83  Aligned_cols=66  Identities=18%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             EEEEcCCeEEEEEecCC-CCCCc--eEEecCCCcccccCCcc---ceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATG-HPKPS--IIWKTSENKPITLGSWK---DSAVASSTLNFTRINRINMG-AYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-~P~p~--v~W~k~~~~~~~~~~~~---~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N  367 (902)
                      ..+.+|+.++|.|.+.+ .|.+.  |+|||++..+.......   .......+|++. +.++|.| .|+|+|.+
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l   83 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETEL   83 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEe
Confidence            44789999999999987 78887  69999776654321100   011122356665 4566666 89999988

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.08  E-value=0.00075  Score=62.90  Aligned_cols=66  Identities=24%  Similarity=0.433  Sum_probs=44.0

Q ss_pred             EEEcCCeEEEEEecCCC-CCCceEEecCCCcc--------c-ccC-----------Ccccee--ccC---CcEEEEeeee
Q psy12803        302 VVREGDNVRLRCVATGH-PKPSIIWKTSENKP--------I-TLG-----------SWKDSA--VAS---STLNFTRINR  355 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~--------~-~~~-----------~~~~~~--~~~---~sL~I~~Vt~  355 (902)
                      .|.+|++|+|.|.+.+. ....+.|+|.....        + ...           ..+...  ..+   ..|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            57899999999998763 34579999865420        0 000           011111  111   2599999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.06  E-value=0.0017  Score=57.77  Aligned_cols=62  Identities=21%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             cEEEEcCCeEEEEEecCCC--CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803        300 PIVVREGDNVRLRCVATGH--PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      +-.+..|++++|+|.....  |.+.|+|...++....     .......+|.+..++..|+|.++|.+.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~~~~~ktL~~~qv~~qdSG~WtC~V~   71 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----ILNQDKKTLNLVQLGPNDSGTWDCIVS   71 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----eccCCccEEEeceeCcccCCEEEEEEE
Confidence            3467899999999999664  4559999876654321     122345689999999999999999874

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.06  E-value=0.00078  Score=61.56  Aligned_cols=62  Identities=23%  Similarity=0.438  Sum_probs=40.8

Q ss_pred             CCeEEEEEecCCCCC-CceEEecCCCc---ccc-c---------CC--cccee----ccCCcEEEEeeeeecCceeEEee
Q psy12803        306 GDNVRLRCVATGHPK-PSIIWKTSENK---PIT-L---------GS--WKDSA----VASSTLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~-p~v~W~k~~~~---~~~-~---------~~--~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A  365 (902)
                      |++|+|.|....... -.|.|+|....   .+. .         ..  .+...    ..+.+|+|.+|+.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998665332 36999986432   100 0         00  11111    13458999999999999999987


Q ss_pred             cC
Q psy12803        366 DN  367 (902)
Q Consensus       366 ~N  367 (902)
                      .+
T Consensus        81 ~~   82 (97)
T cd05846          81 NT   82 (97)
T ss_pred             Ee
Confidence            65

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.02  E-value=0.0011  Score=63.04  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC------CCceEEecCCCcc-----cc-cC-------C--cccee-----ccCCcEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP------KPSIIWKTSENKP-----IT-LG-------S--WKDSA-----VASSTLN  349 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P------~p~v~W~k~~~~~-----~~-~~-------~--~~~~~-----~~~~sL~  349 (902)
                      ..|+.+.+.+|++|+|.|......      ...+.|+|.....     .. ..       .  .+...     ..+.+|+
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            345668899999999999865321      3458999865321     10 00       0  11111     1124799


Q ss_pred             EEeeeeecCceeEEeecC
Q psy12803        350 FTRINRINMGAYMCLADN  367 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N  367 (902)
                      |.+++.+|+|.|.|.+..
T Consensus        84 I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          84 ISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             EccCChhhCeEEEEEEEc
Confidence            999999999999998744

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.01  E-value=0.00083  Score=59.53  Aligned_cols=59  Identities=19%  Similarity=0.333  Sum_probs=40.2

Q ss_pred             EEEEEecCC-CCCCceEEecCCCcccccCCcc----ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWK----DSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~----~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.| +|.+.|+|+|++.++.......    ......++|.|.....+|...|+|+|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~   65 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDH   65 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcC
Confidence            689999887 8999999999887664321110    0111224677765555566689999998

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.97  E-value=0.0043  Score=59.00  Aligned_cols=77  Identities=13%  Similarity=0.051  Sum_probs=49.0

Q ss_pred             cCceeeeecCceEEEEEEeeccC------CceEEEEecCCe-----eee-cC-C--------ceEEEeecCCCceeeEeE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFP------LSVRYWEFIDGT-----LIE-HD-G--------VKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P------~P~v~W~k~~~~-----l~~-~~-~--------~~~~~~~~~~~s~~~~st  433 (902)
                      .|..+.+.+|++|+|.|......      ...+.|++....     +.. .. .        .++.....   .....+.
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~---~~~~~~s   81 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD---LGKKNCS   81 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC---CCCCEEE
Confidence            35667899999999999875332      346899976421     111 00 0        12222101   1122456


Q ss_pred             EEEeccCCCCCeEEEEEEEeC
Q psy12803        434 LNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~  454 (902)
                      |.|.+++.+|+|.|.|.+...
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCeEEEEEEEcC
Confidence            999999999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.96  E-value=0.00091  Score=60.38  Aligned_cols=64  Identities=19%  Similarity=0.345  Sum_probs=42.5

Q ss_pred             EcCCeEEEEEecCCC-C-CCceEEecCCCcccccCC-ccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803        304 REGDNVRLRCVATGH-P-KPSIIWKTSENKPITLGS-WKDSAVASS------TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       304 ~eGe~v~L~C~a~G~-P-~p~v~W~k~~~~~~~~~~-~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..|+.++|.|.+.|. | .+.|+|++++..+..... .......++      .|.|.....+|.+.|+|+|.+
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h   83 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTH   83 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEe
Confidence            468999999999996 6 468999997765533221 122222333      344444444599999999988

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00096 Ig Immunoglobulin domain

Probab=96.92  E-value=0.0011  Score=53.86  Aligned_cols=59  Identities=32%  Similarity=0.593  Sum_probs=43.0

Q ss_pred             EEEEEecCCCCCCceEEecCCCcccccC-----CccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATGHPKPSIIWKTSENKPITLG-----SWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~-----~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.+.+...+.|++.+.......     ...........|.|.+++.+|+|.|.|.+.+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   64 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASN   64 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEec
Confidence            4789999988888999999765432211     1112223345799999999999999999876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.90  E-value=0.0033  Score=58.31  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             eeecCceEEEEEEeeccCCceEEEEecCCe-------eeecC-------------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        380 GVPIGRTATLECEVEAFPLSVRYWEFIDGT-------LIEHD-------------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~-------l~~~~-------------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      .+.+|++|+|.|.+...-...+.|++....       +....             ..++.....     .....|.|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~-----~~~~~L~I~~~   76 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS-----SNSFVLTLKNF   76 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec-----CCEEEEEECCC
Confidence            367899999999986655567999976532       11100             011211111     12456999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+.+
T Consensus        77 ~~sDsgtY~Ca~~~   90 (104)
T cd05720          77 QKENEGYYFCSVAS   90 (104)
T ss_pred             CHHHCEEEEEEEcc
Confidence            99999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=96.85  E-value=0.0013  Score=61.86  Aligned_cols=63  Identities=22%  Similarity=0.358  Sum_probs=42.1

Q ss_pred             cCCeEEEEEecCCCC----------CCceEEecCCC--cc--cc--------cCC--cccee------ccCCcEEEEeee
Q psy12803        305 EGDNVRLRCVATGHP----------KPSIIWKTSEN--KP--IT--------LGS--WKDSA------VASSTLNFTRIN  354 (902)
Q Consensus       305 eGe~v~L~C~a~G~P----------~p~v~W~k~~~--~~--~~--------~~~--~~~~~------~~~~sL~I~~Vt  354 (902)
                      .|++|+|.|.....+          ...|.|+|...  ..  +.        ...  .+...      ..+.+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999987643          36699999632  11  10        000  12111      133579999999


Q ss_pred             eecCceeEEeecC
Q psy12803        355 RINMGAYMCLADN  367 (902)
Q Consensus       355 ~~DsG~YtC~A~N  367 (902)
                      .+|+|.|.|.+..
T Consensus        81 ~sD~G~Y~C~v~~   93 (110)
T cd05878          81 SSDSGVYRCEVMH   93 (110)
T ss_pred             hhhCEEEEEEEEe
Confidence            9999999998754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.84  E-value=0.01  Score=54.27  Aligned_cols=77  Identities=17%  Similarity=0.173  Sum_probs=47.9

Q ss_pred             ceEEEEEEeecc-CCceEEEEecCC----eeeec---CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        385 RTATLECEVEAF-PLSVRYWEFIDG----TLIEH---DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       385 ~~v~L~C~a~g~-P~P~v~W~k~~~----~l~~~---~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +.++|.|..... ....|.|.|...    .+..-   .+        .+.......    ...++|.|.+|+.+|+|.|+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~----~~d~sI~i~nvt~~D~G~Y~   76 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST----REDMSLSFNNATEEDVGLYC   76 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC----CCccEEEEcCCCcccCEEEE
Confidence            468899987532 355788987643    11110   01        111111110    12367999999999999999


Q ss_pred             EEEEeC-CceeEEEEEEE
Q psy12803        449 CISKNE-VDIAKGSLILF  465 (902)
Q Consensus       449 C~A~N~-~G~~~~s~~L~  465 (902)
                      |.+.+- .|..++.+.|.
T Consensus        77 C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          77 CSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             EEEEeCCCCCeEEEEEEE
Confidence            999774 67777776653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.81  E-value=0.0051  Score=58.23  Aligned_cols=91  Identities=19%  Similarity=0.284  Sum_probs=57.9

Q ss_pred             CCEEEE-cCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-C
Q psy12803        369 PPQILI-RNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-F  444 (902)
Q Consensus       369 ~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-s  444 (902)
                      +|.+.+ .+....+.+++.++|.|.+.++ |. ..|.|++++..+...............++|...+.|.|......| .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            344444 3444445567789999999986 55 378999987665432111111222223678888999998765544 4


Q ss_pred             eEEEEEEEeCCceeE
Q psy12803        445 DTYRCISKNEVDIAK  459 (902)
Q Consensus       445 G~YtC~A~N~~G~~~  459 (902)
                      -.|+|.+........
T Consensus        82 ~~ytC~V~H~g~~~~   96 (115)
T cd05769          82 NTFTCIVQFYGGTDT   96 (115)
T ss_pred             CeEEEEEEEeCCccc
Confidence            589999987655444

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.77  E-value=0.0017  Score=60.28  Aligned_cols=66  Identities=21%  Similarity=0.356  Sum_probs=44.3

Q ss_pred             EEEcCCeEEEEEecCCCCCCceEEecCCCc----c---cccC---C----------cccee---ccCCcEEEEeeeeecC
Q psy12803        302 VVREGDNVRLRCVATGHPKPSIIWKTSENK----P---ITLG---S----------WKDSA---VASSTLNFTRINRINM  358 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~----~---~~~~---~----------~~~~~---~~~~sL~I~~Vt~~Ds  358 (902)
                      .+.+|++|+|.|.+.......+.|+|....    +   +...   .          .+...   .....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            367899999999987654567999986532    1   1000   0          01111   1123699999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998754

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.77  E-value=0.0034  Score=57.86  Aligned_cols=85  Identities=18%  Similarity=0.323  Sum_probs=56.6

Q ss_pred             CEEEE-cCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        370 PQILI-RNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       370 P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      |.+.+ .+.......++.++|.|.+.++ | ...|.|++++..+... ..........+++|...+.|.+..-...+...
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSG-VQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECccc-EeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            44444 3333345567889999999986 5 4588999887765321 11111223446788888899887766556679


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |+|.+....
T Consensus        81 ~sC~V~H~~   89 (100)
T cd07699          81 YTCEVTHEG   89 (100)
T ss_pred             EEEEEEecC
Confidence            999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.73  E-value=0.0051  Score=56.30  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             cCceeeeecCceEEEEEEeecc--CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF--PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~--P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      .|....+..++.++|.|.+.++  |. ..|+|+++++........  ......+++|...+.|.+..-...+.-.|+|.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V   82 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PPESHNNATLSVTSTLNVSTDDWISGDTFQCKV   82 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence            3444456678999999999998  53 378999987544321111  123356678888888988765444445899999


Q ss_pred             EeCC
Q psy12803        452 KNEV  455 (902)
Q Consensus       452 ~N~~  455 (902)
                      ....
T Consensus        83 ~H~~   86 (96)
T cd07696          83 THPD   86 (96)
T ss_pred             ECCC
Confidence            8764

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.70  E-value=0.011  Score=54.13  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             ceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEE
Q psy12803        385 RTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGS  461 (902)
Q Consensus       385 ~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s  461 (902)
                      ....+.|.+ .|.|.+.|.|+++..     ...........++.+...++|.+......|.-.|+|+|.|..-..  ..+
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~-----~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~   90 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLG-----GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS   90 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCC-----CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence            457789998 588999999987611     111222233445566778889887655555569999999987444  344


Q ss_pred             EEE
Q psy12803        462 LIL  464 (902)
Q Consensus       462 ~~L  464 (902)
                      +.|
T Consensus        91 ~~L   93 (95)
T cd05719          91 VTL   93 (95)
T ss_pred             EEe
Confidence            444

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.69  E-value=0.0029  Score=56.27  Aligned_cols=58  Identities=16%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             EEEEEecCC-CCCCceEEecCCCcccccCCccceeccC-C------cEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVAS-S------TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~------sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.+ +|.+.|+|++++..+.... .......+ +      .|.|.....+|...|+|+|.+
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h   67 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGH   67 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEEC
Confidence            689999998 6999999999876543221 11111222 2      344434444566789999988

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.67  E-value=0.0028  Score=60.13  Aligned_cols=71  Identities=17%  Similarity=0.327  Sum_probs=46.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cccc---c---------C---Cccceec--c-C--CcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPIT---L---------G---SWKDSAV--A-S--STLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~~---~---------~---~~~~~~~--~-~--~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.....-  ...+.|+|...  .+..   .         .   ..+....  . .  ..|+|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            45567899999999999876532  45699998542  1100   0         0   0111111  1 1  2699999


Q ss_pred             eeeecCceeEEeecC
Q psy12803        353 INRINMGAYMCLADN  367 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N  367 (902)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998753

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.66  E-value=0.0073  Score=55.09  Aligned_cols=76  Identities=13%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      ...+.++|.|.+.++ |. ..|+|++++..+.. ............++|...+.|.|..-...+...|+|.+.......
T Consensus        12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~-~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATL-VAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECcC-ceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            345679999999986 64 47899887765422 111111222344578888889888655556679999998875443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.66  E-value=0.0028  Score=56.12  Aligned_cols=58  Identities=21%  Similarity=0.430  Sum_probs=36.3

Q ss_pred             EEEEEecCC-CCCCceEEecCCCcccccCCccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASS------TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.|.|.+.+ +|.+.|+|+|++..+.... .......++      .|.+.....+|...|+|+|.|
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h   66 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDH   66 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeC
Confidence            689999987 6999999999876553211 111111222      344433334455699999988

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.63  E-value=0.014  Score=54.99  Aligned_cols=74  Identities=14%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             eeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCC-CceeeEeEEEEeccCCCCCe-EEEEEEEeC
Q psy12803        379 VGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDK-GSYQYIMQLNISNVNISDFD-TYRCISKNE  454 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~-~s~~~~stL~I~~V~~~DsG-~YtC~A~N~  454 (902)
                      ..+..|+.++|.|.+.++ |. ..++|++++..+.. ......  ...+ ++|...+.|.+.. ...|.+ .|+|.+...
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~-~~~~~~--p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~   91 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA-EQPNIT--PEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR   91 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc-ccccee--eCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence            345578889999999886 54 58999998877643 222221  1233 4788888998885 444444 599999887


Q ss_pred             Cc
Q psy12803        455 VD  456 (902)
Q Consensus       455 ~G  456 (902)
                      ..
T Consensus        92 ~l   93 (111)
T cd05772          92 TL   93 (111)
T ss_pred             CC
Confidence            53

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.59  E-value=0.0035  Score=55.78  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=37.5

Q ss_pred             EEEEEecCC-CCCCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803        309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++|.|.+.+ +|...|+|+|++..+............+      ++|.|.....+|...|+|++.+
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h   67 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDH   67 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEec
Confidence            689999998 8889999999877643221111111111      2455544444556789999988

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.59  E-value=0.025  Score=51.54  Aligned_cols=70  Identities=23%  Similarity=0.273  Sum_probs=48.2

Q ss_pred             ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..++.++|.|.+.++ |. ..++|.+++..+.. ...........+++|...+.|.|..   ++...|+|.+....
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~-~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD-GVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccC-ceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            346668999999986 64 47899988766532 1112223446667888888888864   35559999997753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03376 BARF1; Provisional

Probab=96.57  E-value=0.018  Score=58.14  Aligned_cols=79  Identities=20%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             eeeeecCceEEEEEEee---ccCCceEEEEec----CCeeeecCCceEEEeecCC-Ccee-----eEeEEEEeccCCCCC
Q psy12803        378 RVGVPIGRTATLECEVE---AFPLSVRYWEFI----DGTLIEHDGVKYSISDVDK-GSYQ-----YIMQLNISNVNISDF  444 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~---g~P~P~v~W~k~----~~~l~~~~~~~~~~~~~~~-~s~~-----~~stL~I~~V~~~Ds  444 (902)
                      .+.+..|+.+.|.|...   ..+.-.|.|++.    ...++...+......+... +...     -+.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            45678899999999765   225568999984    3333322221111110000 0000     134699999999999


Q ss_pred             eEEEEEEEeCCc
Q psy12803        445 DTYRCISKNEVD  456 (902)
Q Consensus       445 G~YtC~A~N~~G  456 (902)
                      |.|+|..+-...
T Consensus       100 GtY~C~fQkge~  111 (221)
T PHA03376        100 GNYLCRMKLGET  111 (221)
T ss_pred             ceEEEEEEcCCC
Confidence            999999976543

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=96.56  E-value=0.0028  Score=58.38  Aligned_cols=61  Identities=18%  Similarity=0.340  Sum_probs=39.9

Q ss_pred             eEEEEEecCCCC---CCceEEecCCCc----ccc---c--C-----C--cccee-----ccCCcEEEEeeeeecCceeEE
Q psy12803        308 NVRLRCVATGHP---KPSIIWKTSENK----PIT---L--G-----S--WKDSA-----VASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       308 ~v~L~C~a~G~P---~p~v~W~k~~~~----~~~---~--~-----~--~~~~~-----~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      +|+|.|......   ...|.|+|....    .+.   .  .     .  .+...     ..+.+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999976543   447999985322    110   0  0     0  11111     124589999999999999999


Q ss_pred             eecCC
Q psy12803        364 LADNV  368 (902)
Q Consensus       364 ~A~N~  368 (902)
                      .+.++
T Consensus        82 ~v~~~   86 (100)
T cd05888          82 RVITF   86 (100)
T ss_pred             EEEeC
Confidence            98763

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.53  E-value=0.012  Score=55.96  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             cCceeeeecCceEEEEEEeeccC--CceEEEEecCC--ee--e--ecC-----------CceEEEeecCCCceeeEeEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDG--TL--I--EHD-----------GVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~--~l--~--~~~-----------~~~~~~~~~~~~s~~~~stL~  435 (902)
                      .+....+.+|++|+|.|.....-  ...+.|++...  .+  +  ...           ..++.......   .....|.
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~   79 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTS---KSTVYLQ   79 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEcc---CCEEEEE
Confidence            34556789999999999876543  45699997642  11  1  000           01222211111   1234699


Q ss_pred             EeccCCCCCeEEEEEEEe
Q psy12803        436 ISNVNISDFDTYRCISKN  453 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N  453 (902)
                      |.+++.+|+|.|.|.+..
T Consensus        80 I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          80 LNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             ECCCCHHHCEEEEEEEEc
Confidence            999999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.53  E-value=0.0053  Score=56.89  Aligned_cols=81  Identities=22%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             cCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeec--CCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDV--DKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~--~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      .+....+..+..++|.|.+.++ |.. .++|++++..+.............  .+++|...+.|.|..-...+...|+|+
T Consensus         7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~   86 (102)
T cd05768           7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV   86 (102)
T ss_pred             CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence            3333445567899999999987 433 679998877653221111111111  257788888898855444455689999


Q ss_pred             EEeCC
Q psy12803        451 SKNEV  455 (902)
Q Consensus       451 A~N~~  455 (902)
                      |....
T Consensus        87 V~H~~   91 (102)
T cd05768          87 VGHEA   91 (102)
T ss_pred             eEeCC
Confidence            97754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.49  E-value=0.0039  Score=57.10  Aligned_cols=63  Identities=17%  Similarity=0.358  Sum_probs=41.6

Q ss_pred             CeEEEEEecCC-CCCCceEEecCCCc---cccc----------CC--cccee----ccCCcEEEEeeeeecCceeEEeec
Q psy12803        307 DNVRLRCVATG-HPKPSIIWKTSENK---PITL----------GS--WKDSA----VASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       307 e~v~L~C~a~G-~P~p~v~W~k~~~~---~~~~----------~~--~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      ++++|.|.... ....+|+|.|....   .+..          ..  .+...    ..+.+|.|.+|+.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46899999764 34567889986431   1110          00  11111    135799999999999999999987


Q ss_pred             CCC
Q psy12803        367 NVP  369 (902)
Q Consensus       367 N~~  369 (902)
                      .+|
T Consensus        81 t~P   83 (96)
T cd05889          81 TYP   83 (96)
T ss_pred             eCC
Confidence            744

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.47  E-value=0.027  Score=51.28  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             eecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        381 VPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       381 v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      +..|+..+|.|.|.++ | ...|+|++++..+.  ...........+++|+..+.|.|.   ..+.-.|+|.+....
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~--~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP--KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC--CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence            3457778999999986 5 34789998877654  222223445667788888888876   456668999998753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.44  E-value=0.014  Score=51.54  Aligned_cols=70  Identities=23%  Similarity=0.347  Sum_probs=48.9

Q ss_pred             cCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        383 IGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .++.+.|.|.+.++ |.. .|.|++++..+.... .........++.|...+.|.+.   ..+...|+|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~-~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGV-ETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTE-EEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeee-eecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            48899999999986 544 799988776653211 1111222567888888899988   4555589999988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.42  E-value=0.0047  Score=58.50  Aligned_cols=24  Identities=17%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             cCCcEEEEeeeeecCceeEEeecC
Q psy12803        344 ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       344 ~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.+|.|.+++.+|+|.|.|.+.+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~  100 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMH  100 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEE
Confidence            356899999999999999998755

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=96.41  E-value=0.0047  Score=56.53  Aligned_cols=62  Identities=19%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             CeEEEEEecCC-CCCCceEEecCCCc---ccccC----------C--cccee----ccCCcEEEEeeeeecCceeEEeec
Q psy12803        307 DNVRLRCVATG-HPKPSIIWKTSENK---PITLG----------S--WKDSA----VASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       307 e~v~L~C~a~G-~P~p~v~W~k~~~~---~~~~~----------~--~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      ++|+|.|.... ....+|+|.|....   .+..-          .  .+...    ..+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            46899999774 33457999885321   11100          0  11111    235699999999999999999987


Q ss_pred             CC
Q psy12803        367 NV  368 (902)
Q Consensus       367 N~  368 (902)
                      ++
T Consensus        81 tf   82 (96)
T cd05887          81 TF   82 (96)
T ss_pred             eC
Confidence            63

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.37  E-value=0.0032  Score=61.43  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.+++.+|+|.|+|.+.+..+.....++|.|..+|.+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v   41 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV   41 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence            4999999999999999999999999999999999876554

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.34  E-value=0.0034  Score=58.98  Aligned_cols=62  Identities=24%  Similarity=0.351  Sum_probs=40.2

Q ss_pred             CCeEEEEEecCCCC-------CCceEEecCC-----Ccc--cc----------cCCccceec------cCCcEEEEeeee
Q psy12803        306 GDNVRLRCVATGHP-------KPSIIWKTSE-----NKP--IT----------LGSWKDSAV------ASSTLNFTRINR  355 (902)
Q Consensus       306 Ge~v~L~C~a~G~P-------~p~v~W~k~~-----~~~--~~----------~~~~~~~~~------~~~sL~I~~Vt~  355 (902)
                      |++|+|.|..+-.|       .+.|.|.|..     ...  ..          .-..+....      .+.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999955322       4689999852     111  00          001122221      245899999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|.+..
T Consensus        82 ~D~G~Y~C~v~~   93 (110)
T cd05902          82 SDSGTYRCEVVL   93 (110)
T ss_pred             HHCEEEEEEEEE
Confidence            999999998754

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.31  E-value=0.035  Score=50.56  Aligned_cols=72  Identities=22%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             eecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        381 VPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       381 v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      +.+++.++|.|.+.++ |.. .+.|++++..+... ..........+++|...+.|.+..   ++...|+|.+.....
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l   84 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG-VVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSL   84 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC-ceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCC
Confidence            3468899999999986 544 78999888765432 111123345566788888887753   455699999987654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>KOG1480|consensus

Probab=96.28  E-value=0.0031  Score=74.76  Aligned_cols=165  Identities=18%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCC----ceEEecCCCcccccCCc--cceeccCCcEEEEeeeeecCc---eeEE-
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKP----SIIWKTSENKPITLGSW--KDSAVASSTLNFTRINRINMG---AYMC-  363 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p----~v~W~k~~~~~~~~~~~--~~~~~~~~sL~I~~Vt~~DsG---~YtC-  363 (902)
                      .+..+.+..+..+..+.|.|.+...+..    .-.|.+...........  .-.....-++.|.....++.+   .|.| 
T Consensus        27 ~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQ  106 (909)
T KOG1480|consen   27 FTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQ  106 (909)
T ss_pred             eeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeee
Confidence            3456667778899999999998764432    23465543221111000  000001112333333333333   3655 


Q ss_pred             -eecC----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCC
Q psy12803        364 -LADN----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK  425 (902)
Q Consensus       364 -~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~  425 (902)
                       .|..                ..-.|...+.-+.|.++..+.|.|.. ++.|...++|++++..+.. ....+. .  ..
T Consensus       107 c~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~-~--~d  182 (909)
T KOG1480|consen  107 CVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIR-A--SD  182 (909)
T ss_pred             eeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccchh-h--hc
Confidence             4444                12233444555778888888998865 6889999999887765544 222211 1  12


Q ss_pred             CceeeEeEEEEeccCCCCCeEEEEEEEeCCcee---EEEEEEEeec
Q psy12803        426 GSYQYIMQLNISNVNISDFDTYRCISKNEVDIA---KGSLILFESN  468 (902)
Q Consensus       426 ~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~---~~s~~L~V~~  468 (902)
                      +.      |+|..+...|.|+|+|+|.|.++..   ...+.++|..
T Consensus       183 ~~------li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~g  222 (909)
T KOG1480|consen  183 HN------LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNG  222 (909)
T ss_pred             CC------ccccchhhhhcccceeeeehhhccccccceEEEEEEcC
Confidence            22      9999999999999999999988754   3555666544

>smart00406 IGv Immunoglobulin V-Type

Probab=96.25  E-value=0.015  Score=50.21  Aligned_cols=63  Identities=25%  Similarity=0.364  Sum_probs=38.4

Q ss_pred             eEEEEEEeeccCCc--eEEEEecCC----eeee-c-----------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        386 TATLECEVEAFPLS--VRYWEFIDG----TLIE-H-----------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       386 ~v~L~C~a~g~P~P--~v~W~k~~~----~l~~-~-----------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|+|.|.+.....+  .+.|++...    .++. .           ...++......   .....+|.|.+++.+|+|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~i~~~~~~D~G~Y   77 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT---SKNDVSLTISNLRVEDTGTY   77 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC---cCCEEEEEEcCCCHHHCEEE
Confidence            47899998766543  789987652    1111 1           01122222111   01235699999999999999


Q ss_pred             EEEE
Q psy12803        448 RCIS  451 (902)
Q Consensus       448 tC~A  451 (902)
                      .|.+
T Consensus        78 ~C~v   81 (81)
T smart00406       78 YCAV   81 (81)
T ss_pred             EEcC
Confidence            9963

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.25  E-value=0.014  Score=54.93  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=26.0

Q ss_pred             EEEEcCCeEEEEEecCC-CCC-CceEEecCCCccc
Q psy12803        301 IVVREGDNVRLRCVATG-HPK-PSIIWKTSENKPI  333 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~~  333 (902)
                      ..+..|+.++|.|.+.+ +|. .+|+|+|++..+.
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            34557889999999999 564 6899999876653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.23  E-value=0.028  Score=51.35  Aligned_cols=75  Identities=11%  Similarity=0.123  Sum_probs=49.0

Q ss_pred             ceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        385 RTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       385 ~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      ..+.+.|.+. +.|.+.|.|+++...     ..........++.+...++|.+......|.-.|+|+|.|..-.....+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g-----~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~   90 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGG-----NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP   90 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCC-----CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence            3578999775 779999999876211     1112222333455567788988766666666999999998754444443


Q ss_pred             E
Q psy12803        464 L  464 (902)
Q Consensus       464 L  464 (902)
                      +
T Consensus        91 ~   91 (95)
T cd07703          91 V   91 (95)
T ss_pred             E
Confidence            3

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.21  E-value=0.0085  Score=55.20  Aligned_cols=61  Identities=20%  Similarity=0.459  Sum_probs=39.0

Q ss_pred             eEEEEEecCC-CCC---CceEEecCCC--c-ccc-cC-----------Cccce----eccCCcEEEEeeeeecCceeEEe
Q psy12803        308 NVRLRCVATG-HPK---PSIIWKTSEN--K-PIT-LG-----------SWKDS----AVASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       308 ~v~L~C~a~G-~P~---p~v~W~k~~~--~-~~~-~~-----------~~~~~----~~~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      +|+|.|.... .|.   .+|+|.+...  . .+. ..           ..+..    ...+.+|+|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            6899999874 221   2599987521  1 110 00           01111    12347999999999999999999


Q ss_pred             ecCC
Q psy12803        365 ADNV  368 (902)
Q Consensus       365 A~N~  368 (902)
                      +.++
T Consensus        82 v~t~   85 (99)
T cd05886          82 FATF   85 (99)
T ss_pred             EEeC
Confidence            9884

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.03  E-value=0.039  Score=50.43  Aligned_cols=71  Identities=17%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.++|.|.+.++ |. ..|+|++++.. .. ...........++.|...+.|.|....-...-.|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~-~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TS-GVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CC-CcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999986 53 47899887765 21 111111111225778888889887643333557999998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.95  E-value=0.0073  Score=53.94  Aligned_cols=29  Identities=34%  Similarity=0.736  Sum_probs=23.2

Q ss_pred             EcCCeEEEEEecCC-CCCCceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HPKPSIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~  332 (902)
                      .+|+.+.|.|.+.+ +|.+.|+|+.++...
T Consensus        12 ~~~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   12 GEGEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             SSTEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ccceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            33789999998765 999999999987765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>KOG1924|consensus

Probab=95.73  E-value=0.041  Score=65.41  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=9.6

Q ss_pred             eEEEecCCCCCceEee-cChhhhc
Q psy12803        596 KFWMTTDSDPTHLNEY-KDKDMFK  618 (902)
Q Consensus       596 ~~~~~~~~~~~~~~ey-~~~~~~~  618 (902)
                      .||.++... ..++|| .|+..|+
T Consensus       964 eYyaFd~kk-ysmEEFFaDi~tFr  986 (1102)
T KOG1924|consen  964 EYYAFDPKK-YSMEEFFADIRTFR  986 (1102)
T ss_pred             HHeecCccc-CcHHHHHHHHHHHH
Confidence            355444322 233443 5555554

>smart00406 IGv Immunoglobulin V-Type

Probab=95.71  E-value=0.01  Score=51.24  Aligned_cols=58  Identities=17%  Similarity=0.320  Sum_probs=36.9

Q ss_pred             eEEEEEecCCCCC--CceEEecCCC--c--ccc-c-----------CCccceec-----cCCcEEEEeeeeecCceeEEe
Q psy12803        308 NVRLRCVATGHPK--PSIIWKTSEN--K--PIT-L-----------GSWKDSAV-----ASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       308 ~v~L~C~a~G~P~--p~v~W~k~~~--~--~~~-~-----------~~~~~~~~-----~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      +|+|.|.+.....  ..+.|++...  .  .+. .           ...+....     ...+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999887544  3789998542  1  111 0           01111111     123799999999999999996


Q ss_pred             e
Q psy12803        365 A  365 (902)
Q Consensus       365 A  365 (902)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.71  E-value=0.033  Score=51.28  Aligned_cols=77  Identities=19%  Similarity=0.310  Sum_probs=50.8

Q ss_pred             cCceeeeecCceEEEEEEeecc--C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF--P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~--P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      .|....+..+..++|.|.+.++  | ...|.|.+++..    +..........+++|...+.|.|..-.-.-...|+|.+
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~----~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V   85 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK----EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTV   85 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc----CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEE
Confidence            3444445578899999999984  4 347899888764    11111122345678888899988744333334799999


Q ss_pred             EeCC
Q psy12803        452 KNEV  455 (902)
Q Consensus       452 ~N~~  455 (902)
                      ....
T Consensus        86 ~H~~   89 (99)
T cd04986          86 THPE   89 (99)
T ss_pred             ECCC
Confidence            8764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.52  E-value=0.033  Score=46.88  Aligned_cols=51  Identities=25%  Similarity=0.433  Sum_probs=35.6

Q ss_pred             EcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        304 REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       304 ~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..|.+|+|+|.....   .+.|.+++..+..         .+..+.+.+-. +++|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence            579999999976532   3999998744321         12345555555 899999999865

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.50  E-value=0.027  Score=51.05  Aligned_cols=62  Identities=18%  Similarity=0.318  Sum_probs=34.6

Q ss_pred             CCeEEEEEecCC-CCCC-ceEEecCCCcccccC-CccceeccCCcEE---EEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATG-HPKP-SIIWKTSENKPITLG-SWKDSAVASSTLN---FTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G-~P~p-~v~W~k~~~~~~~~~-~~~~~~~~~~sL~---I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++.++|.|.+.| .|.. .|+|+|++....... ........+++..   ...+..+|...|+|++.+
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H   81 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEH   81 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEe
Confidence            788999999999 4543 899999874322111 1111112222222   223334466677776655

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.40  E-value=0.034  Score=46.75  Aligned_cols=52  Identities=21%  Similarity=0.216  Sum_probs=34.8

Q ss_pred             ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      ..|.+|+|+|...+.   .+.|.+++..+.. +..                .+.+.+-. +++|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g-~~~----------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG-SDE----------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCC-CCc----------------eEEeeccC-CCCceEEEEeCCC
Confidence            468999999965532   3999888744422 111                14444555 8899999999654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.36  E-value=1.3  Score=47.87  Aligned_cols=190  Identities=14%  Similarity=0.160  Sum_probs=126.0

Q ss_pred             eEEEecCCCCC-ceEeecChhhhcccCCcceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCC
Q psy12803        596 KFWMTTDSDPT-HLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVD  674 (902)
Q Consensus       596 ~~~~~~~~~~~-~~~ey~~~~~~~~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~  674 (902)
                      .+|...+-.+. .|..|    ++..++....+.||-..-|-|-++.|+.||---..+.....||.++-+...+..++.  
T Consensus        57 ~LyESTG~yG~S~l~~~----d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--  130 (264)
T PF05096_consen   57 TLYESTGLYGQSSLRKV----DLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--  130 (264)
T ss_dssp             EEEEEECSTTEEEEEEE----ETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS--
T ss_pred             EEEEeCCCCCcEEEEEE----ECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCC--
Confidence            45554443333 34433    345566667899999999999999999999999999999999999876666555442  


Q ss_pred             CCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEEEeccccccccc---eEEEecEEEEEeecCCC
Q psy12803        675 PNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGD---MFVVCGVLYVVDSVTDR  751 (902)
Q Consensus       675 ~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~~~k~~~~n---aFmvCGvLY~~~s~~~~  751 (902)
                             -++   =|+.|..-||+-    +|.=.|..+||++|++.++...+...+.+.+   -=.|=|.+||=--    
T Consensus       131 -------EGW---GLt~dg~~Li~S----DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW----  192 (264)
T PF05096_consen  131 -------EGW---GLTSDGKRLIMS----DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVW----  192 (264)
T ss_dssp             -------S-----EEEECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEET----
T ss_pred             -------cce---EEEcCCCEEEEE----CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC----
Confidence                   112   255888888875    6666788899999999999999876655544   4446788888543    


Q ss_pred             cceEEEEEeCCCCcee-eeeee--ec-----CC----CCCceeeecCCCCCeEEEEeCCeEEEEEeEEee
Q psy12803        752 NTNIRFALDLYKNDLL-EVSLN--FT-----NP----FTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE  809 (902)
Q Consensus       752 ~~~I~y~~Dt~~~~~~-~~~i~--f~-----~~----~~~~~~l~YnP~d~~LY~wd~g~~~~Y~v~f~~  809 (902)
                      .+..-...|..|++-. .+++.  .+     ..    -..+.-|.|+|..+.||+=-.----.|.|++.+
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e  262 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE  262 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence            3346677899998744 34411  11     11    256888999999999999888777888888865

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.34  E-value=0.067  Score=48.99  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=45.4

Q ss_pred             eeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        379 VGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      ..+..++.++|.|.|.++ |. ..|+|.+++..+.. ...........+ +|...+.|.|..-.  ..-.|+|.+...
T Consensus        11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~-~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL-GSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC-CeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            334456789999999986 53 37899888766432 111111222333 78888888876442  233599999774

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>KOG1924|consensus

Probab=95.31  E-value=0.084  Score=62.92  Aligned_cols=9  Identities=44%  Similarity=0.700  Sum_probs=4.9

Q ss_pred             eeeeEeecc
Q psy12803         34 NRFRRHVDK   42 (902)
Q Consensus        34 ~~~~~~~~~   42 (902)
                      ||||.+.|+
T Consensus       448 yr~~l~id~  456 (1102)
T KOG1924|consen  448 YRFRLDIDL  456 (1102)
T ss_pred             hhhcccCcH
Confidence            555555544

>smart00407 IGc1 Immunoglobulin C-Type

Probab=95.30  E-value=0.021  Score=49.58  Aligned_cols=60  Identities=15%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             eEEEEEecCC-CCC-CceEEecCCCcccccCC-ccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803        308 NVRLRCVATG-HPK-PSIIWKTSENKPITLGS-WKDSAVASS------TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       308 ~v~L~C~a~G-~P~-p~v~W~k~~~~~~~~~~-~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .++|.|.+.| .|. ..|+|+|++..+..... .......++      .|.|.....++...|+|++.+
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H   69 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTH   69 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEE
Confidence            3689999999 455 68999997764322111 011111232      233333344556678887754

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=95.24  E-value=0.037  Score=50.43  Aligned_cols=29  Identities=17%  Similarity=0.308  Sum_probs=23.3

Q ss_pred             EcCCeEEEEEecCC-CCCC-ceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HPKP-SIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P~p-~v~W~k~~~~~  332 (902)
                      .+|+.++|.|.+.| .|.. .++|+|++..+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~   42 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEE   42 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeec
Confidence            46899999999999 5544 78999987654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02633 hypothetical protein; Provisional

Probab=95.10  E-value=0.047  Score=45.20  Aligned_cols=37  Identities=30%  Similarity=0.209  Sum_probs=33.6

Q ss_pred             EEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        434 LNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |.|.++..+|+|.|.|+.+|.--....++.|.|....
T Consensus        20 Lwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         20 MLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             EEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            9999999999999999999998888999999987543

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.89  E-value=0.031  Score=51.21  Aligned_cols=65  Identities=17%  Similarity=0.386  Sum_probs=38.1

Q ss_pred             EEcCCeEEEEEecCCC--C-CCceEEecCCCcccccCCccceeccCCcEEEEe---eeeec---CceeEEeecC
Q psy12803        303 VREGDNVRLRCVATGH--P-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTR---INRIN---MGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~--P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~---Vt~~D---sG~YtC~A~N  367 (902)
                      +..|+.++|.|.+.|.  | ...|+|+|+++..............++++.+..   +..+|   .-.|+|.+..
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            5568999999999997  4 446899998754322211112223344444432   22332   3368888876

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=94.87  E-value=0.024  Score=52.22  Aligned_cols=30  Identities=17%  Similarity=0.444  Sum_probs=24.3

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      ..+++.++|.|.|.+ +| ...|+|+|++..+
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~   45 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATV   45 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEEC
Confidence            446788999999999 56 6689999987664

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.74  E-value=0.22  Score=45.66  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=51.9

Q ss_pred             eeeeecCceEEE-EEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        378 RVGVPIGRTATL-ECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       378 ~~~v~~G~~v~L-~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ...+.+|+.+.+ .|.+ .+.|.+.|.|+.+.....     ........+++...+++|.+......|.-.++|++....
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            456778888888 8876 577999999986532221     122233445567778889987666667779999998874


Q ss_pred             c
Q psy12803        456 D  456 (902)
Q Consensus       456 G  456 (902)
                      -
T Consensus        85 l   85 (97)
T cd07704          85 L   85 (97)
T ss_pred             c
Confidence            4

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=94.63  E-value=0.058  Score=49.09  Aligned_cols=29  Identities=31%  Similarity=0.418  Sum_probs=22.5

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      ..|+..+|.|.|.| +| ...|+|+|++..+
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~   43 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKI   43 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEEC
Confidence            45777899999999 44 5578999987654

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=94.17  E-value=0.047  Score=49.75  Aligned_cols=28  Identities=18%  Similarity=0.546  Sum_probs=22.1

Q ss_pred             cCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803        305 EGDNVRLRCVATG-HPK-PSIIWKTSENKP  332 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~  332 (902)
                      ..+.++|.|.|.| .|. .+|+|+|++..+
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~   42 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA   42 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence            4567999999999 564 679999977653

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>KOG3545|consensus

Probab=94.16  E-value=0.28  Score=52.07  Aligned_cols=179  Identities=17%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             EEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEEEec--cccccccceEEE-ecEEEEEeecCCCcceEEEEEeCCC
Q psy12803        687 MDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNIT--LLHKKVGDMFVV-CGVLYVVDSVTDRNTNIRFALDLYK  763 (902)
Q Consensus       687 iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~--~~k~~~~naFmv-CGvLY~~~s~~~~~~~I~y~~Dt~~  763 (902)
                      -|.......-|++ .--.+++++.-.+ .+.-+...|-+.  ++....+..++| ||-||--+    .++++--.||+.+
T Consensus        24 rDpl~~~~r~~~~-~~~~~~~l~E~~~-~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk----~~t~~ivky~l~~   97 (249)
T KOG3545|consen   24 RDPLPADDRIYVM-NYFDGLMLTEYTN-LEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNK----AGTRNIIKYDLET   97 (249)
T ss_pred             cCCCcccCceEEe-ccccCceEEEecc-HHHhhccCcceEEeCCCCccccceEEEcceEEeec----cCCcceEEEEeec
Confidence            3555557788888 2224555554444 232233333333  577888888877 88888876    3455555556555


Q ss_pred             Ccee-eee---ee----ecCCCCCceeeecCCCCCeEEEE-----eCCeEEEEEe-----EEeeecccCCCCCCcCCC--
Q psy12803        764 NDLL-EVS---LN----FTNPFTNTTMITYNSRYKDLYTW-----DRGNSLTYPI-----RYHEIDSYNLNKQEKTDA--  823 (902)
Q Consensus       764 ~~~~-~~~---i~----f~~~~~~~~~l~YnP~d~~LY~w-----d~g~~~~Y~v-----~f~~~~~~~~~~~~~~~~--  823 (902)
                      .... ...   .-    |+=....++-||..=.|+-|++-     ++|.+|.=+|     ++........+++.....  
T Consensus        98 ~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~  177 (249)
T KOG3545|consen   98 RTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFM  177 (249)
T ss_pred             ceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEE
Confidence            3321 122   22    22334556668888888877653     5577773332     333333222222222222  


Q ss_pred             ----------------CccccccCCCCCC--CCc-CCcccceEE-Eee----eeeeeecCCCceeeeeeEee
Q psy12803        824 ----------------DMTTGVDITPTQP--PLI-PDSTYSFIR-LTF----QDLYTWDRGNSLTYPIRYHE  871 (902)
Q Consensus       824 ----------------~~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~  871 (902)
                                      .+.-..+.++...  +.| -+.-|+.|. |.|    +.||.||.|+||+|+|++++
T Consensus       178 iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wdng~~l~y~l~~~~  249 (249)
T KOG3545|consen  178 ICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWDNGHQLTYNLTFFE  249 (249)
T ss_pred             EeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEecCCcEEEEEeEecC
Confidence                            1111222221111  111 122233332 333    57999999999999999975

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.07  E-value=0.26  Score=46.48  Aligned_cols=74  Identities=14%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             cCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeeee-------------cCCceEEEeecCCCceeeEeEEEEec
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLIE-------------HDGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~~-------------~~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .+....+..|..++|.|++++.-.   -.+.|.+.....++             ....++......+.   -+.+|.|.+
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~---ntv~L~l~~   80 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGN---EQVNFTLQN   80 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCC---CEEEEEEcC
Confidence            344556788899999999977643   35778765322110             01112222222221   245699999


Q ss_pred             cCCCCCeEEEEEE
Q psy12803        439 VNISDFDTYRCIS  451 (902)
Q Consensus       439 V~~~DsG~YtC~A  451 (902)
                      ++.+|.+.|.|..
T Consensus        81 L~a~DTa~Y~Ca~   93 (115)
T cd05721          81 LRANQTDIYFCKI   93 (115)
T ss_pred             CCHHHCeEEEEEe
Confidence            9999999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=93.82  E-value=0.12  Score=47.20  Aligned_cols=28  Identities=18%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             cCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        305 EGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      .++.++|.|.|.| +| ...|+|+|++..+
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~   43 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPV   43 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEc
Confidence            4667899999999 55 4678999987653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=93.74  E-value=0.083  Score=48.38  Aligned_cols=30  Identities=10%  Similarity=0.358  Sum_probs=22.8

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      +..+..++|.|.|.+ .| ..+|+|.|++..+
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~   44 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPS   44 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEEC
Confidence            444678999999999 45 4568999977653

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>KOG4597|consensus

Probab=93.67  E-value=0.076  Score=60.21  Aligned_cols=93  Identities=15%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccCCceEEEEec---CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI---DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~---~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+...+....+..+++++++|-+.|.|.+.|+|.+.   ...++.....  .   .++-....+..|.|-+....|+|.|
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq--~---~e~p~vtstcql~ic~ewq~~a~w~  272 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ--T---VENPVVTSTCQLVICNEWQADAGWY  272 (560)
T ss_pred             ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc--c---cCCcceeeeeeEEEcchhhcCCCce
Confidence            333345556788999999999999999999999642   1111111111  1   1111122355699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeec
Q psy12803        448 RCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|.|+|.+|...+.+.+.+..
T Consensus       273 tCs~rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  273 TCSARCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             eeccccccceeeccceeeeec
Confidence            999999999999999887754

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.33  E-value=1  Score=48.64  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=68.7

Q ss_pred             EecCCccEEEEEcCCCcEEEEeeCCCCc--ceeEEEEeccccccccceEEE-ecEEEEEeecCCCcceEEEEEeCCCCce
Q psy12803        690 SLDENGLWVIYGLSNNNTAVTKLDTATL--QIQYTWNITLLHKKVGDMFVV-CGVLYVVDSVTDRNTNIRFALDLYKNDL  766 (902)
Q Consensus       690 avDE~GLWviY~~~~~~ivvskld~~~l--~v~~tw~t~~~k~~~~naFmv-CGvLY~~~s~~~~~~~I~y~~Dt~~~~~  766 (902)
                      ..|.+-+|++=.. .++.+..=-+-++|  .-.......++....|+.++| =|.||.-+.    ++.--..||+.+++.
T Consensus        27 ~~~~~~iy~~~~~-~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~----~s~~IvkydL~t~~v  101 (250)
T PF02191_consen   27 PSDSEKIYVTSGF-SGNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY----NSRNIVKYDLTTRSV  101 (250)
T ss_pred             CCCCCCEEEECcc-CCCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec----CCceEEEEECcCCcE
Confidence            3677788887333 44455444455555  223333445678889999998 788998875    444556677777765


Q ss_pred             e-eeee---e----ecCCCCCceeeecCCCCCeEEEE-----eCCeEEEEEeE
Q psy12803        767 L-EVSL---N----FTNPFTNTTMITYNSRYKDLYTW-----DRGNSLTYPIR  806 (902)
Q Consensus       767 ~-~~~i---~----f~~~~~~~~~l~YnP~d~~LY~w-----d~g~~~~Y~v~  806 (902)
                      . ...|   .    |+=.....+-||..=.|+-|.+=     ++|++|.=+|.
T Consensus       102 ~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld  154 (250)
T PF02191_consen  102 VARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLD  154 (250)
T ss_pred             EEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeC
Confidence            5 3332   2    22233556678888888876654     34677776665

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PHA03270 envelope glycoprotein C; Provisional

Probab=93.17  E-value=9.4  Score=43.62  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             cEEEEeeeeecCceeEEeecC----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEecC
Q psy12803        347 TLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFID  407 (902)
Q Consensus       347 sL~I~~Vt~~DsG~YtC~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~~  407 (902)
                      .|+|..++...+|.|+-...+                .+|.+.+.+.  .+.+|+...-.|.+..+ |.  ..+.|+.++
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            599999999999999988544                3344433332  36789999999998655 53  368899988


Q ss_pred             CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC-eEEEEEEE
Q psy12803        408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF-DTYRCISK  452 (902)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds-G~YtC~A~  452 (902)
                      ..+......+.......++ ....|+|++........ =+.+|.+.
T Consensus       261 ~~V~~~~~i~~~~~~~~dG-fs~vStvtsea~~~~~~PPsLrC~v~  305 (466)
T PHA03270        261 DEVFAPERVRTRVDAQRDG-FSATSTLTSEARAGLAPPRNLTCEFT  305 (466)
T ss_pred             ccccCcceeeeeeEecCCC-eeEEEEEeccccccCCCCCCceEEEE
Confidence            8774333333333333333 34667777766543322 27899874

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=93.08  E-value=0.31  Score=45.95  Aligned_cols=76  Identities=13%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--C-CceEEecCCCcccc---c----------CCccceec-----cCCcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--K-PSIIWKTSENKPIT---L----------GSWKDSAV-----ASSTLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~-p~v~W~k~~~~~~~---~----------~~~~~~~~-----~~~sL~I~~Vt~  355 (902)
                      ++....+..|.+|+|.|.+++.-  . -.+.|+|.....+.   .          ...+....     ..-+|.|.+++.
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a   83 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA   83 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence            45557788999999999998743  3 46889885332210   0          01111111     112799999999


Q ss_pred             ecCceeEEeecC-CCCEE
Q psy12803        356 INMGAYMCLADN-VPPQI  372 (902)
Q Consensus       356 ~DsG~YtC~A~N-~~P~i  372 (902)
                      +|++.|.|..+. +||-+
T Consensus        84 ~DTa~Y~Ca~e~myPPPy  101 (115)
T cd05721          84 NQTDIYFCKIELMYPPPY  101 (115)
T ss_pred             HHCeEEEEEeeeccCCCE
Confidence            999999998776 44433

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=92.81  E-value=0.28  Score=41.75  Aligned_cols=59  Identities=15%  Similarity=0.255  Sum_probs=39.5

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      .+.|.|+|.+    .-+|.|++ +..+....                ..+|.|-++...-.|.|.|.+.+  -..+..++
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~----------------~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQ   62 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS----------------NTLLDLGSRINDPRGTYSCKESE--PNKEKTLQ   62 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc----------------ccEEeccCcccCCCcceEecCcc--CCCcEEEE
Confidence            3579999966    25599988 55543211                11388888889999999999877  22334444


Q ss_pred             EE
Q psy12803        464 LF  465 (902)
Q Consensus       464 L~  465 (902)
                      |+
T Consensus        63 Vy   64 (69)
T cd07691          63 VY   64 (69)
T ss_pred             EE
Confidence            44

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=92.74  E-value=0.26  Score=45.12  Aligned_cols=64  Identities=20%  Similarity=0.261  Sum_probs=40.0

Q ss_pred             EEcCCeEEEEEecCC-CCC--CceEEecCCCcccccCCcc-----ceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803        303 VREGDNVRLRCVATG-HPK--PSIIWKTSENKPITLGSWK-----DSAVASSTLNFTRINRINMG-AYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P~--p~v~W~k~~~~~~~~~~~~-----~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N  367 (902)
                      +.+|..+++.|.+.+ .|.  .+|.|+|.+..+.......     ........++|.. +++|.| +|+|+|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence            478999999999986 554  6799998554332211100     0011223556555 477777 89999864

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.65  E-value=0.14  Score=45.22  Aligned_cols=28  Identities=29%  Similarity=0.665  Sum_probs=22.3

Q ss_pred             cCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803        305 EGDNVRLRCVATG-HPK-PSIIWKTSENKP  332 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~  332 (902)
                      .++.++|.|.+.+ .|. ..|.|++++..+
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~   36 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV   36 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence            4889999999998 553 379999977654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.64  E-value=0.21  Score=48.05  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=47.5

Q ss_pred             ecCceEEEEEEeecc-----CCceEEEEecCCeeeecCCceEEE-eecC-----CCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        382 PIGRTATLECEVEAF-----PLSVRYWEFIDGTLIEHDGVKYSI-SDVD-----KGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-----P~P~v~W~k~~~~l~~~~~~~~~~-~~~~-----~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      .-.++|.|.|.+...     +.-.|.|.+++..+...++..... ....     .....-.++|.+...+.- .|+|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            346889999988642     344689988777654432221111 0000     000011234888776555 8999999


Q ss_pred             EEeCCceeEEEEEEEee
Q psy12803        451 SKNEVDIAKGSLILFES  467 (902)
Q Consensus       451 A~N~~G~~~~s~~L~V~  467 (902)
                      |.....+.+..+.|...
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99998888888888764

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=92.32  E-value=0.35  Score=44.33  Aligned_cols=66  Identities=15%  Similarity=0.375  Sum_probs=41.4

Q ss_pred             CcEEEEcCCeEEE-EEecC-CCCCCceEEecCCCcccccCCccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRL-RCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASS------TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L-~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+.+.+ .|.+. |+|.++|+|+.+......   .......++      .|.+.....+|.-.++|++.+
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H   82 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSH   82 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeC
Confidence            3466889999999 99865 699999999986333211   111112222      444444444566688998876

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=92.30  E-value=0.11  Score=48.12  Aligned_cols=30  Identities=17%  Similarity=0.422  Sum_probs=23.0

Q ss_pred             EEcCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803        303 VREGDNVRLRCVATG-HPK-PSIIWKTSENKP  332 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~  332 (902)
                      +..++.++|.|.|.| .|. ..|+|+|++..+
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~   44 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPL   44 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEEC
Confidence            445788999999999 453 368999987654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=92.06  E-value=0.26  Score=41.86  Aligned_cols=49  Identities=20%  Similarity=0.441  Sum_probs=37.4

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.|.|.|.+.    .+|.|++ +..+...        .+.+|.+-.+..+=.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence            45899999762    4699999 5543321        156788999999999999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=91.36  E-value=0.32  Score=44.41  Aligned_cols=58  Identities=16%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             CeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803        307 DNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       307 e~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.|.+. ++|.+.|+|+++.......   ......+      +.|.+.....+|.-.|+|++.+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~---~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h   80 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANT---TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEH   80 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE---EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence            4678999876 6999999999973221110   1111112      2455544444555689999988

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=91.04  E-value=0.16  Score=48.11  Aligned_cols=30  Identities=33%  Similarity=0.665  Sum_probs=23.5

Q ss_pred             EEcCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803        303 VREGDNVRLRCVATG-HPK-PSIIWKTSENKP  332 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~  332 (902)
                      +.+++.++|.|.|.+ .|. ..|+|+|++..+
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l   46 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEV   46 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEEC
Confidence            446778999999999 565 589999977554

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.65  E-value=6.1  Score=42.06  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEec-CCccEEEEEcCCCcEEEEeeCCCCcce
Q psy12803        641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLD-ENGLWVIYGLSNNNTAVTKLDTATLQI  719 (902)
Q Consensus       641 ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avD-E~GLWviY~~~~~~ivvskld~~~l~v  719 (902)
                      +|.||+.-.....|.|+|+.+..... ..++.             -.=++++ +.|.+++ +. .+.+.+.  |+.+=++
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-------------~~G~~~~~~~g~l~v-~~-~~~~~~~--d~~~g~~   72 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-------------PNGMAFDRPDGRLYV-AD-SGGIAVV--DPDTGKV   72 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEE-EESSS-------------EEEEEEECTTSEEEE-EE-TTCEEEE--ETTTTEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-------------CceEEEEccCCEEEE-EE-cCceEEE--ecCCCcE
Confidence            48999998888899999999987743 22321             2333444 4444433 22 2333333  5555444


Q ss_pred             eEEEEec--cccccccc--eEEEecEEEEEeecCCCcceE----EEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCe
Q psy12803        720 QYTWNIT--LLHKKVGD--MFVVCGVLYVVDSVTDRNTNI----RFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKD  791 (902)
Q Consensus       720 ~~tw~t~--~~k~~~~n--aFmvCGvLY~~~s~~~~~~~I----~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~  791 (902)
                      +...+..  -.+...-|  +|--=|-||++++........    -|.+|.. ++-..   .+.+ ...-.-|.++|..+.
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~---~~~~-~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV---VADG-LGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE---EEEE-ESSEEEEEEETTSSE
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE---EecC-cccccceEECCcchh
Confidence            4333331  11222223  444458899999865443333    5777777 43222   2222 233348999999999


Q ss_pred             EEEEeCCeEEEEEeEEe
Q psy12803        792 LYTWDRGNSLTYPIRYH  808 (902)
Q Consensus       792 LY~wd~g~~~~Y~v~f~  808 (902)
                      ||+=|-.....|.+.+.
T Consensus       148 lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             EEEEETTTTEEEEEEEE
T ss_pred             eeecccccceeEEEecc
Confidence            99988666556655554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>smart00284 OLF Olfactomedin-like domains

Probab=90.63  E-value=1.9  Score=46.57  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             cccccccceEEEe-cEEEEEeecCCCcceEEEEEeCCCCcee-e--ee-eeecCCCC----CceeeecCCCCCeEEEE--
Q psy12803        727 LLHKKVGDMFVVC-GVLYVVDSVTDRNTNIRFALDLYKNDLL-E--VS-LNFTNPFT----NTTMITYNSRYKDLYTW--  795 (902)
Q Consensus       727 ~~k~~~~naFmvC-GvLY~~~s~~~~~~~I~y~~Dt~~~~~~-~--~~-i~f~~~~~----~~~~l~YnP~d~~LY~w--  795 (902)
                      ++....|..+||- |.||.-+.    ++..-.-||+.+++.. .  +. -.|.+++.    ..+.||..-.|+-|.+-  
T Consensus        70 Lp~~~~GtG~VVYngslYY~~~----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa  145 (255)
T smart00284       70 LPHAGQGTGVVVYNGSLYFNKF----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA  145 (255)
T ss_pred             CCCccccccEEEECceEEEEec----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe
Confidence            4667888888886 78888654    3344566777776643 2  22 23344443    45779999999977766  


Q ss_pred             ---eCCeEEEEEeE
Q psy12803        796 ---DRGNSLTYPIR  806 (902)
Q Consensus       796 ---d~g~~~~Y~v~  806 (902)
                         ++|++|.=+|.
T Consensus       146 t~~~~g~ivvSkLn  159 (255)
T smart00284      146 TEQNAGKIVISKLN  159 (255)
T ss_pred             ccCCCCCEEEEeeC
Confidence               66999976665

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=90.39  E-value=0.47  Score=43.32  Aligned_cols=58  Identities=17%  Similarity=0.323  Sum_probs=35.2

Q ss_pred             CeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803        307 DNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       307 e~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ....+.|.+. |+|.+.|+|+++......   .......+      +.|.+.....+|.-.|+|++.|
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~---~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h   80 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAE---TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSH   80 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcce---eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence            4678899985 699999999996211110   01111122      2455544444555589999988

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA02982 hypothetical protein; Provisional

Probab=90.02  E-value=1.2  Score=45.81  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             cEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCC---------------cc----c-eeccCCcEEEEeeeeecC
Q psy12803        300 PIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGS---------------WK----D-SAVASSTLNFTRINRINM  358 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~---------------~~----~-~~~~~~sL~I~~Vt~~Ds  358 (902)
                      ++....+++|.|.|.... .--.+..|+++++..+....               .+    . .....++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            466778999999999543 33456889987765544111               00    1 112346899999999999


Q ss_pred             ceeEEeecC---C----CCEEEEcCce--eeeecC-ceEEEEEEeeccCCceEEEEecC
Q psy12803        359 GAYMCLADN---V----PPQILIRNRR--VGVPIG-RTATLECEVEAFPLSVRYWEFID  407 (902)
Q Consensus       359 G~YtC~A~N---~----~P~i~~~p~~--~~v~~G-~~v~L~C~a~g~P~P~v~W~k~~  407 (902)
                      |-|+|+|..   .    .--+.+....  ..+.++ ....+.|-+-..-.+...|..++
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~G  171 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDILYVVEEHNNETIITCFVGSKHGDVPRFIVAG  171 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEEEEEEecCCeEEEEEEEEeccCCCccEEEee
Confidence            999999987   1    1112221111  123344 34668898865544444896654

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=89.16  E-value=0.43  Score=50.90  Aligned_cols=48  Identities=19%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        319 PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       319 P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..|.+.|...++.++... ....+...+.|++.+...+++|.|+|..+-
T Consensus        11 iDP~y~W~GP~g~~l~gn-~~~nIT~TG~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGN-SYVNITETGKLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCCceEEECCCCcccCCC-CeEEEccCceEEeeccccccCCceEEEEEE
Confidence            468899999888776533 355667788999999999999999998643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03269 envelope glycoprotein C; Provisional

Probab=88.92  E-value=2.1  Score=49.18  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             cEEEEeeeeecCceeEEeecC-----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEec
Q psy12803        347 TLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFI  406 (902)
Q Consensus       347 sL~I~~Vt~~DsG~YtC~A~N-----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~  406 (902)
                      .|.|.+++..++|.|+-+..+                 .+|.+.+.+  ..+.+|+...-.|.+..+ |.  ..+.|+.+
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            599999999999999987543                 333333333  246789999999998655 53  36889998


Q ss_pred             CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC--CeEEEEEEE
Q psy12803        407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD--FDTYRCISK  452 (902)
Q Consensus       407 ~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D--sG~YtC~A~  452 (902)
                      ++.+.. ...........++.....|+|++......|  -=+.+|.+.
T Consensus       368 g~~V~~-~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~  414 (566)
T PHA03269        368 FGNIGK-NFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL  414 (566)
T ss_pred             CcccCc-cccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence            777653 222222333455555667778875443333  246799874

>KOG1480|consensus

Probab=88.77  E-value=0.18  Score=60.38  Aligned_cols=68  Identities=22%  Similarity=0.334  Sum_probs=54.6

Q ss_pred             CCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.-..|.++..+.|.|.. .+.|...+.|+|++....+  ........+..|+|..+...|+|+|+|+|.|
T Consensus       136 p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~~~arlsd~~nytc~a~n  204 (909)
T KOG1480|consen  136 PVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLIISQARLSDSGNYTCEATN  204 (909)
T ss_pred             hhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccccchhhhhcccceeeeeh
Confidence            334567888899999985 5789999999997655544  3445556678899999999999999999999

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=88.75  E-value=0.3  Score=47.06  Aligned_cols=64  Identities=14%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             EEcCCeEEEEEecCC-----CCCCceEEecCCCcccccCCc--------------cceeccCCcEEEEeeeeecCceeEE
Q psy12803        303 VREGDNVRLRCVATG-----HPKPSIIWKTSENKPITLGSW--------------KDSAVASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-----~P~p~v~W~k~~~~~~~~~~~--------------~~~~~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      ..-.++|.|.|.+..     -+...|.|.+++..+......              .....++.+|.+...+.- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            346899999999975     124458998876654322111              111234557999886665 899999


Q ss_pred             eecC
Q psy12803        364 LADN  367 (902)
Q Consensus       364 ~A~N  367 (902)
                      ++..
T Consensus       103 eVt~  106 (130)
T PF08204_consen  103 EVTE  106 (130)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8744

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=88.65  E-value=17  Score=36.35  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=52.3

Q ss_pred             EEEcCeEEEeecCCc-----cEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEec-CCccEEEEEcC-CCcEEEE
Q psy12803        638 VVFNNSFYYHKKFSN-----SIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLD-ENGLWVIYGLS-NNNTAVT  710 (902)
Q Consensus       638 vvyng~lYy~~~~s~-----~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avD-E~GLWviY~~~-~~~ivvs  710 (902)
                      |-.||++|--.+...     -|+.|||.+++......+|....      .....++|++= +.-|-+++... ..++-|-
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~------~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IW   75 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND------DDDDSVSLSVVRGDCLCVLYQCDETSKIEIW   75 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC------ccCCEEEEEEecCCEEEEEEeccCCccEEEE
Confidence            567999998754443     49999999999966777774222      34567899754 45799998643 3346555


Q ss_pred             eeCCCCcceeEEEE
Q psy12803        711 KLDTATLQIQYTWN  724 (902)
Q Consensus       711 kld~~~l~v~~tw~  724 (902)
                      -++...=. ..+|.
T Consensus        76 vm~~~~~~-~~SWt   88 (164)
T PF07734_consen   76 VMKKYGYG-KESWT   88 (164)
T ss_pred             EEeeeccC-cceEE
Confidence            55531101 66773

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA03273 envelope glycoprotein C; Provisional

Probab=88.30  E-value=2.9  Score=48.05  Aligned_cols=104  Identities=16%  Similarity=0.119  Sum_probs=67.4

Q ss_pred             cEEEEeeeeecCceeEEeecC----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEecC
Q psy12803        347 TLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFID  407 (902)
Q Consensus       347 sL~I~~Vt~~DsG~YtC~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~~  407 (902)
                      .|+|..++..++|.|+-...+                .+|.+.+.+.  .+.+|+...-.|.+..+ |.  ..+.|+.++
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            499999999999999977433                3444443333  46789999999998655 53  368899988


Q ss_pred             CeeeecCCceEEEeecCCCceeeEeEEEEeccCC-CCCeEEEEEEE
Q psy12803        408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFDTYRCISK  452 (902)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~-~DsG~YtC~A~  452 (902)
                      ..+.......-.......+.....|+|++..... +--=+.+|.+.
T Consensus       277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~  322 (486)
T PHA03273        277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE  322 (486)
T ss_pred             eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence            8765222222222223333345577788777543 33337999874

>PHA02633 hypothetical protein; Provisional

Probab=88.29  E-value=0.4  Score=39.83  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.7

Q ss_pred             cCCcEEEEeeeeecCceeEEeecC
Q psy12803        344 ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       344 ~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ....|.|-++..+|+|.|.|..+|
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn   39 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKN   39 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcC
Confidence            455899999999999999999988

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=88.22  E-value=6.6  Score=44.28  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             eeeeecCceEEEEEEeec--c-CCceEEEEecCCee---ee------------cCCceEEEeecCCCc-eeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEA--F-PLSVRYWEFIDGTL---IE------------HDGVKYSISDVDKGS-YQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g--~-P~P~v~W~k~~~~l---~~------------~~~~~~~~~~~~~~s-~~~~stL~I~~  438 (902)
                      .+.+.+|..|.|.|...-  + .-..+.|+.-+-++   ..            .....+.+....+.+ --..|+|+|.+
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            355667999999998763  3 23467897443221   10            112223333221111 11357899999


Q ss_pred             cCCCCCeEEEEEEEeCCceeEE
Q psy12803        439 VNISDFDTYRCISKNEVDIAKG  460 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~~~  460 (902)
                      +.-+.+|=|+|.|....-..+.
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec  374 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEEC  374 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhh
Confidence            9999999999999876544433

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=88.20  E-value=0.78  Score=41.89  Aligned_cols=27  Identities=37%  Similarity=0.783  Sum_probs=21.2

Q ss_pred             cCCeEEEEEecCC-CC-CCceEEecCCCc
Q psy12803        305 EGDNVRLRCVATG-HP-KPSIIWKTSENK  331 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P-~p~v~W~k~~~~  331 (902)
                      ..+.++|.|.|.+ .| ..+|+|+|++..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            3567999999999 44 457899998765

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=88.19  E-value=0.93  Score=41.76  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=23.0

Q ss_pred             EEcCCeEEEEEecCC-C-C-CCceEEecCCCc
Q psy12803        303 VREGDNVRLRCVATG-H-P-KPSIIWKTSENK  331 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~-P-~p~v~W~k~~~~  331 (902)
                      +..+..++|.|.+.+ . | ...|+|.+++..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            446789999999999 4 5 457999998765

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PLN02153 epithiospecifier protein

Probab=87.23  E-value=18  Score=40.64  Aligned_cols=153  Identities=17%  Similarity=0.182  Sum_probs=79.9

Q ss_pred             cCCCCCcceEEEcCeEEEeecC-----------CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccE
Q psy12803        629 KEPFQGNAHVVFNNSFYYHKKF-----------SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLW  697 (902)
Q Consensus       629 ~~~~~Gtg~vvyng~lYy~~~~-----------s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLW  697 (902)
                      |.+-.+...+++++.||---..           .+.+..||+++.+   |..++.. ........+++   +++-++-|+
T Consensus       125 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~---W~~l~~~-~~~~~~r~~~~---~~~~~~~iy  197 (341)
T PLN02153        125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK---WVQLPDP-GENFEKRGGAG---FAVVQGKIW  197 (341)
T ss_pred             CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe---EeeCCCC-CCCCCCCCcce---EEEECCeEE
Confidence            4445566778999999854211           1368889999874   4445421 10001111222   455566788


Q ss_pred             EEEEcC-----CC-----cEEEEeeCCCCcceeEEEEec-----cccccccc-eEEEecEEEEEeecCC----------C
Q psy12803        698 VIYGLS-----NN-----NTAVTKLDTATLQIQYTWNIT-----LLHKKVGD-MFVVCGVLYVVDSVTD----------R  751 (902)
Q Consensus       698 viY~~~-----~~-----~ivvskld~~~l~v~~tw~t~-----~~k~~~~n-aFmvCGvLY~~~s~~~----------~  751 (902)
                      ||++..     .+     .-.|-.+|+.+    .+|..-     .+...... +-++-+-||++--...          .
T Consensus       198 v~GG~~~~~~~gG~~~~~~~~v~~yd~~~----~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  273 (341)
T PLN02153        198 VVYGFATSILPGGKSDYESNAVQFFDPAS----GKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGT  273 (341)
T ss_pred             EEeccccccccCCccceecCceEEEEcCC----CcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccc
Confidence            887642     11     11345566654    346532     22222232 3344568888855321          1


Q ss_pred             cceEEEEEeCCCCceeeee----eeecCCC--CCceeeecCCCCCeEEEE
Q psy12803        752 NTNIRFALDLYKNDLLEVS----LNFTNPF--TNTTMITYNSRYKDLYTW  795 (902)
Q Consensus       752 ~~~I~y~~Dt~~~~~~~~~----i~f~~~~--~~~~~l~YnP~d~~LY~w  795 (902)
                      ...--|+||+.+.+=..+.    -++++..  ...+++.++   ++||+|
T Consensus       274 ~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~---~~~~~~  320 (341)
T PLN02153        274 LSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK---NGLLMH  320 (341)
T ss_pred             ccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCc---ceEEEE
Confidence            1224699999998755443    1344432  234444444   677775

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=87.06  E-value=2.2  Score=39.22  Aligned_cols=72  Identities=18%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             eecCceEEEEEEee-ccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-EEEEEEEeCCc
Q psy12803        381 VPIGRTATLECEVE-AFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-TYRCISKNEVD  456 (902)
Q Consensus       381 v~~G~~v~L~C~a~-g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~YtC~A~N~~G  456 (902)
                      +.+|..+++.|.+. ..|.  .+|.|++.+..+....   +.............+.++|.- +.+|.| +|+|.|.=.++
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~---f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS---FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccc---cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            57899999999996 4465  5789976554443211   110000000000123355554 477777 99999865443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=86.95  E-value=6.5  Score=44.88  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             EEEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCC--ccceeccCCcEEEEeeeeecCc------eeEEeecC--
Q psy12803        301 IVVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGS--WKDSAVASSTLNFTRINRINMG------AYMCLADN--  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~--~~~~~~~~~sL~I~~Vt~~DsG------~YtC~A~N--  367 (902)
                      ..+.+|+...-.|.+.. +|  ...++|++++..+.....  .......++-..++-++.++.+      +.+|.+.=  
T Consensus       229 ~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r  308 (466)
T PHA03270        229 HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR  308 (466)
T ss_pred             CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence            34679999999999987 44  346999998877643222  1122223443455666666654      66897742  


Q ss_pred             -----------CCCEEEEcCce-eeeecCceEEEEEEeeccC-CceEEEEecCCee
Q psy12803        368 -----------VPPQILIRNRR-VGVPIGRTATLECEVEAFP-LSVRYWEFIDGTL  410 (902)
Q Consensus       368 -----------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l  410 (902)
                                 ..|.+...+.. +....|.   ..|.+.-.| ...+.|..++...
T Consensus       309 d~vS~sR~nAa~~P~VY~~P~Isv~F~dG~---AVCtA~CVPegV~l~W~V~D~~~  361 (466)
T PHA03270        309 DSVSFSRRNATGAPTVLPRPTIEMEFGGDE---AVCTAACVPEGVTLAWLLGADPA  361 (466)
T ss_pred             CCccceeecccccCccccCCeEEEEEeCCE---EEEeccccCCCCEEEEEecCCCC
Confidence                       22333323322 2222222   236665555 3478998877655

>PHA03269 envelope glycoprotein C; Provisional

Probab=86.14  E-value=9.3  Score=44.22  Aligned_cols=143  Identities=15%  Similarity=0.162  Sum_probs=73.2

Q ss_pred             EEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCC-ccceeccCCcE-EEEeeee-ec-Ccee-----EEeecC--
Q psy12803        302 VVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGS-WKDSAVASSTL-NFTRINR-IN-MGAY-----MCLADN--  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL-~I~~Vt~-~D-sG~Y-----tC~A~N--  367 (902)
                      .+.+|+...-.|.+.. +|  ...++|++++..+..... .......++.+ .++-++. ++ ++.|     +|.+.=  
T Consensus       338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R  417 (566)
T PHA03269        338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR  417 (566)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence            4679999999999987 44  346899998776643111 11122333422 2333333 22 3454     897742  


Q ss_pred             -----------CCCEEEEcCce-eeeecCceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        368 -----------VPPQILIRNRR-VGVPIGRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       368 -----------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                                 ..|.+...+.. +....|   .-.|.+.-.|.  ..+.|..++......+...........+.      
T Consensus       418 DsVS~tRfnAaatP~VY~~PtISm~FedG---~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGL------  488 (566)
T PHA03269        418 DGVSHMKYSAAVTPDVYPFPNVSIEIIDG---HIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRF------  488 (566)
T ss_pred             CCchheecccccCCccccCCeEEEEEeCC---EEEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCc------
Confidence                       22333223322 222223   23477776664  47899888766322221111112222222      


Q ss_pred             EEEec---cCCCC-CeEEEEEEEe
Q psy12803        434 LNISN---VNISD-FDTYRCISKN  453 (902)
Q Consensus       434 L~I~~---V~~~D-sG~YtC~A~N  453 (902)
                      ..|.+   +..+| --.|+|.+.-
T Consensus       489 VNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        489 VNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             eeecccccccccCCceeEEEEEee
Confidence            44555   33333 1389998754

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=85.55  E-value=1  Score=48.17  Aligned_cols=50  Identities=18%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       397 P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..|.+.|...++.++. ....+.+..  .+      .|.+.+..++++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l~-gn~~~nIT~--TG------~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLS-GNSYVNITE--TG------KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccC-CCCeEEEcc--Cc------eEEeeccccccCCceEEEEEEEe
Confidence            3588999988877765 333344433  33      39999999999999999987654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=85.40  E-value=3.4  Score=44.38  Aligned_cols=71  Identities=14%  Similarity=0.279  Sum_probs=46.8

Q ss_pred             cCceEEEEEEeecc-----CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        383 IGRTATLECEVEAF-----PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-----P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      -.+++.+.|.+...     -.-.+.|.+++..+...+..+             .++|.+.... .=.|+|||.|.+...+
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-------------~aSL~~~f~~-~l~GNYTCEv~~l~n~   95 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-------------TSSLKFNFSK-NLSGNYTCEAINKFNK   95 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-------------ceEEEEeccc-cCCCceeEEEeecccC
Confidence            36789999988643     355799988877665433321             1336665443 3479999999987766


Q ss_pred             eEEEEEEEee
Q psy12803        458 AKGSLILFES  467 (902)
Q Consensus       458 ~~~s~~L~V~  467 (902)
                      .+..++|.-.
T Consensus        96 gk~~IeLk~~  105 (286)
T PHA03042         96 IKNTIELQYV  105 (286)
T ss_pred             ccEEEEEEEE
Confidence            5655555543

>PHA02982 hypothetical protein; Provisional

Probab=85.28  E-value=2.1  Score=44.08  Aligned_cols=76  Identities=16%  Similarity=0.319  Sum_probs=50.9

Q ss_pred             eeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecC-----------------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        378 RVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHD-----------------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~-----------------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++...++++|.|.|... +.--....|+..++..+...                 ...+..+...     ..|+|+|.++
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-----~~STLTIkk~  107 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-----NSSTFTMKKP  107 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-----cceeEEeccC
Confidence            45567899999999842 22344678987766554311                 1112222222     2568999999


Q ss_pred             CCCCCeEEEEEEEeCCcee
Q psy12803        440 NISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~  458 (902)
                      ..+..|=|+|+|+...+..
T Consensus       108 ~i~N~GCYtc~~ks~~~k~  126 (251)
T PHA02982        108 DPQNLGCFTCEAKDAEGKE  126 (251)
T ss_pred             CcccCCceEEEEecCCCch
Confidence            9999999999999876544

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=85.12  E-value=6.8  Score=36.39  Aligned_cols=35  Identities=17%  Similarity=0.031  Sum_probs=28.1

Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEEee
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIA-KGSLILFES  467 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V~  467 (902)
                      +|.|+.++..|+|.|.-.+.|..|.. ...+.|.|-
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            39999999999999999999999988 466666653

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG0613|consensus

Probab=84.88  E-value=1.8  Score=55.18  Aligned_cols=88  Identities=8%  Similarity=-0.164  Sum_probs=59.9

Q ss_pred             eeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .+.+..+..+++.|...+.+.|. ++|++.........+.......     ..+.-.+.|..+...+.+.|.|.|.|..|
T Consensus       343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~ts~~~~~~~~~~~e~~~~~~~a~n~~g  417 (1205)
T KOG0613|consen  343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVG-----TVTSHTYTIKDAGPGEGYFTRVPAVNKGG  417 (1205)
T ss_pred             eeccccCcceeecccccCCcCCchheeecccccccccccccccccc-----cccCcchhhhhcCcccccccccceeccCC
Confidence            34455677899999999998886 9998776554332222111111     11233588999999999999999999999


Q ss_pred             eeEEEEEEEeecCC
Q psy12803        457 IAKGSLILFESNAK  470 (902)
Q Consensus       457 ~~~~s~~L~V~~~p  470 (902)
                      .........|....
T Consensus       418 ~~~~~~~~~vs~~~  431 (1205)
T KOG0613|consen  418 TEQTIAESTVSEEM  431 (1205)
T ss_pred             cccccchhhccccc
Confidence            87666555555433

>PHA03271 envelope glycoprotein C; Provisional

Probab=84.82  E-value=7  Score=44.35  Aligned_cols=105  Identities=12%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             cEEEEeeeeecCceeEEeecC-----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEec
Q psy12803        347 TLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFI  406 (902)
Q Consensus       347 sL~I~~Vt~~DsG~YtC~A~N-----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~  406 (902)
                      .|.|.+|...|+|.|+-...+                 .+|.+.+.+.  .+.+|+...-.|.+..+ |.  ..+.|+.+
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            699999999999977555544                 2333333332  36789999999998755 53  36889998


Q ss_pred             CCeeeecCCceEEE-eecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        407 DGTLIEHDGVKYSI-SDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       407 ~~~l~~~~~~~~~~-~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      +............. -..........|+|.+.+...+--=+.+|.+.=
T Consensus       286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W  333 (490)
T PHA03271        286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAW  333 (490)
T ss_pred             CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEE
Confidence            77664433222221 112222333456666655433333389998743

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=83.89  E-value=31  Score=39.16  Aligned_cols=159  Identities=13%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             cEEEEcCCeEEEEEecC--CC-CCCceEEecCCCccccc-----------------CCccc-------eeccCCcEEEEe
Q psy12803        300 PIVVREGDNVRLRCVAT--GH-PKPSIIWKTSENKPITL-----------------GSWKD-------SAVASSTLNFTR  352 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~--G~-P~p~v~W~k~~~~~~~~-----------------~~~~~-------~~~~~~sL~I~~  352 (902)
                      .+.+..|..|.|.|..+  |+ --..+.|+-.+-+.-+.                 .+..+       .-...++|+|.+
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            36677799999999866  33 34468898655332210                 00001       112346899999


Q ss_pred             eeeecCceeEEeecCC------CCEEEEcCc--eeeeecCc-eEEEEEEeecc--CCceEEEEecCCeeeecCCceEEEe
Q psy12803        353 INRINMGAYMCLADNV------PPQILIRNR--RVGVPIGR-TATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~------~P~i~~~p~--~~~v~~G~-~v~L~C~a~g~--P~P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      +..+.+|-|+|+|...      .--+.+..+  -....+++ .....|-+-..  -++.+.|..++-......-..+...
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~  432 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEH  432 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEEeccCceEEEEEEEEecccCCceeEEEEccEEecCeecCccccc
Confidence            9999999999999871      111111111  11233544 45678977555  3457999766533211100000000


Q ss_pred             ecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCcee
Q psy12803        422 DVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIA  458 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~  458 (902)
                      ....-..-..+.+.|.+-...| --.-.|+..-..+.+
T Consensus       433 ~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Ya  470 (500)
T PHA02914        433 EGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGYA  470 (500)
T ss_pred             ccccccccceEEEEEecccCccccccceEEEecCCCce
Confidence            0000001123457777665555 345667765555543

>PHA03098 kelch-like protein; Provisional

Probab=83.70  E-value=51  Score=39.53  Aligned_cols=151  Identities=25%  Similarity=0.298  Sum_probs=86.6

Q ss_pred             eCcCCCCCcceEEEcCeEEEeec-----CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEE
Q psy12803        627 NLKEPFQGNAHVVFNNSFYYHKK-----FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYG  701 (902)
Q Consensus       627 ~l~~~~~Gtg~vvyng~lYy~~~-----~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~  701 (902)
                      .+|.+-.+.+.++++|.||---.     ....+-+||+.+.+-.....++.  .+   +  .+   -.++-++-++|+=+
T Consensus       328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~--~r---~--~~---~~~~~~~~iYv~GG  397 (534)
T PHA03098        328 ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF--PR---Y--NP---CVVNVNNLIYVIGG  397 (534)
T ss_pred             CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc--CC---c--cc---eEEEECCEEEEECC
Confidence            45556677888999999997422     23578899999886544333332  11   1  11   12344455555422


Q ss_pred             cC-CCc--EEEEeeCCCCcceeEEEEecc--cc-ccccceEEEecEEEEEeecCCCc----ceEEEEEeCCCCceeeee-
Q psy12803        702 LS-NNN--TAVTKLDTATLQIQYTWNITL--LH-KKVGDMFVVCGVLYVVDSVTDRN----TNIRFALDLYKNDLLEVS-  770 (902)
Q Consensus       702 ~~-~~~--ivvskld~~~l~v~~tw~t~~--~k-~~~~naFmvCGvLY~~~s~~~~~----~~I~y~~Dt~~~~~~~~~-  770 (902)
                      .. .+.  -.+-+.|+.+    .+|..--  +. +....|...=|.||++--.+...    ....+.||+.+++-..+. 
T Consensus       398 ~~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~  473 (534)
T PHA03098        398 ISKNDELLKTVECFSLNT----NKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS  473 (534)
T ss_pred             cCCCCcccceEEEEeCCC----CeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence            21 111  2456677764    4676532  22 22333556678899986533211    234799999999865543 


Q ss_pred             eeecCCCCCceeeecCCCCCeEEEEe
Q psy12803        771 LNFTNPFTNTTMITYNSRYKDLYTWD  796 (902)
Q Consensus       771 i~f~~~~~~~~~l~YnP~d~~LY~wd  796 (902)
                      ++++.  ...+++.+   +.+||++-
T Consensus       474 ~~~~r--~~~~~~~~---~~~iyv~G  494 (534)
T PHA03098        474 LNFPR--INASLCIF---NNKIYVVG  494 (534)
T ss_pred             CCccc--ccceEEEE---CCEEEEEc
Confidence            44443  33455555   68899986

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=83.61  E-value=54  Score=36.97  Aligned_cols=164  Identities=20%  Similarity=0.266  Sum_probs=92.7

Q ss_pred             CCceEEEecCCCCCceEeecC--hh-hhcccCCcceEeCcCCCCCcceEEEc---CeEEEeecCCccEEEEEcC--CccE
Q psy12803        593 NSEKFWMTTDSDPTHLNEYKD--KD-MFKSDAKSWTYNLKEPFQGNAHVVFN---NSFYYHKKFSNSIVQFDLG--SSKI  664 (902)
Q Consensus       593 ~~~~~~~~~~~~~~~~~ey~~--~~-~~~~~~~~~~~~l~~~~~Gtg~vvyn---g~lYy~~~~s~~ivkydl~--~~~~  664 (902)
                      +...+|+... ..+.|..|+=  .. .+..   ...+.+| ...|.=|+++.   ..+|-..+.++.|..|++.  +...
T Consensus       154 dg~~v~v~dl-G~D~v~~~~~~~~~~~l~~---~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~  228 (345)
T PF10282_consen  154 DGRFVYVPDL-GADRVYVYDIDDDTGKLTP---VDSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL  228 (345)
T ss_dssp             TSSEEEEEET-TTTEEEEEEE-TTS-TEEE---EEEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCCEEEEEec-CCCEEEEEEEeCCCceEEE---eeccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence            3446666543 2344544432  11 1222   2244454 35677799995   3566678888888888888  4444


Q ss_pred             EEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCC--CcceeEEEEeccccccccceEEE--e
Q psy12803        665 INIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTA--TLQIQYTWNITLLHKKVGDMFVV--C  739 (902)
Q Consensus       665 ~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~--~l~v~~tw~t~~~k~~~~naFmv--C  739 (902)
                      .....++....   -+.....--+++++.+|-|+.-+.. .+.|++=+||+.  .|+..+.+.|.-..+   ..|.+  .
T Consensus       229 ~~~~~~~~~~~---~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P---r~~~~s~~  302 (345)
T PF10282_consen  229 TEIQTISTLPE---GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP---RHFAFSPD  302 (345)
T ss_dssp             EEEEEEESCET---TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---EEEEE-TT
T ss_pred             eEEEEeeeccc---cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---cEEEEeCC
Confidence            33332221101   1222235567778888877655554 678999999876  588888877742211   23333  4


Q ss_pred             cE-EEEEeecCCCcceEEEEEeCCCCceeee
Q psy12803        740 GV-LYVVDSVTDRNTNIRFALDLYKNDLLEV  769 (902)
Q Consensus       740 Gv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~  769 (902)
                      |- |||....  .+.-..|..|..+++...+
T Consensus       303 g~~l~Va~~~--s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  303 GRYLYVANQD--SNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             SSEEEEEETT--TTEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEecC--CCeEEEEEEeCCCCcEEEe
Confidence            44 5555432  3445677889999886654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PHA03271 envelope glycoprotein C; Provisional

Probab=82.07  E-value=18  Score=41.22  Aligned_cols=106  Identities=20%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             EEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCCcccee----ccCCcEEEEeeeeecCc-----eeEEeecC--
Q psy12803        302 VVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGSWKDSA----VASSTLNFTRINRINMG-----AYMCLADN--  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~~~~~~----~~~~sL~I~~Vt~~DsG-----~YtC~A~N--  367 (902)
                      .+.+|+...-.|.+.. .|  ...++|++++.............    ..++.-.++.++.++++     +.+|.+.=  
T Consensus       256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~r  335 (490)
T PHA03271        256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQ  335 (490)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEcc
Confidence            3678999999999987 44  34689999877654433211111    11122223344444444     67887742  


Q ss_pred             ----------CCCEEEEcCce-eeeecCceEEEEEEeeccC-CceEEEEecCCee
Q psy12803        368 ----------VPPQILIRNRR-VGVPIGRTATLECEVEAFP-LSVRYWEFIDGTL  410 (902)
Q Consensus       368 ----------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l  410 (902)
                                ..|.+-.+|.. +....|.   -.|.+.--| ...+.|..++...
T Consensus       336 d~v~s~rnAaatP~VY~~P~ISv~FedG~---AVCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        336 GDMISTTNATAIPTVYHHPRISLAFKDGY---AICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             CCceeeeecccCCccccCCeEEEEEeCCE---EEEeccccCCCcEEEEEecCCCC
Confidence                      22333223322 2222232   236665544 3478998877654

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=81.08  E-value=17  Score=32.11  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=24.4

Q ss_pred             EEEeccCCCCCeEEEEEE-EeCCceeEEEEEEEe
Q psy12803        434 LNISNVNISDFDTYRCIS-KNEVDIAKGSLILFE  466 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A-~N~~G~~~~s~~L~V  466 (902)
                      +.....+.+|+|.++|.| .+..-.....+.|.|
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            566677889999999999 666555566666655

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=81.06  E-value=47  Score=35.19  Aligned_cols=164  Identities=20%  Similarity=0.225  Sum_probs=94.2

Q ss_pred             EeCcCCCCCcceEEE--cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCc-cEEEEEc
Q psy12803        626 YNLKEPFQGNAHVVF--NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENG-LWVIYGL  702 (902)
Q Consensus       626 ~~l~~~~~Gtg~vvy--ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~G-LWviY~~  702 (902)
                      +.++-   =.|.++-  +|.||.-..  ..+..+|+.++++.....+.....      ....-=|+++|.+| ||+.=..
T Consensus        37 ~~~~~---~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~------~~~~~ND~~vd~~G~ly~t~~~  105 (246)
T PF08450_consen   37 IDLPG---PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGV------PFNRPNDVAVDPDGNLYVTDSG  105 (246)
T ss_dssp             EESSS---EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCS------CTEEEEEEEE-TTS-EEEEEEC
T ss_pred             EecCC---CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCc------ccCCCceEEEcCCCCEEEEecC
Confidence            45553   4555555  588877744  456666999998866555431100      11233589999999 5544222


Q ss_pred             C-C--Cc--EEEEeeCCCCcceeEEEEeccccccccceEEEec-EEEEEeecCCCcceEEEEEeCCCCceee--eeeeec
Q psy12803        703 S-N--NN--TAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCG-VLYVVDSVTDRNTNIRFALDLYKNDLLE--VSLNFT  774 (902)
Q Consensus       703 ~-~--~~--ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~y~~Dt~~~~~~~--~~i~f~  774 (902)
                      . .  ..  =.|-++++. .++...++- + ...-+=||---| .||++++..  ..-..|.+|..+.+...  +-+.|.
T Consensus       106 ~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~  180 (246)
T PF08450_consen  106 GGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFP  180 (246)
T ss_dssp             CBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred             CCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcC
Confidence            1 1  11  358888888 555444432 2 222344566667 899998854  33445556555553333  335666


Q ss_pred             CCCCCceeeecCCCCCeEEEE--eCCeEEEEEeE
Q psy12803        775 NPFTNTTMITYNSRYKDLYTW--DRGNSLTYPIR  806 (902)
Q Consensus       775 ~~~~~~~~l~YnP~d~~LY~w--d~g~~~~Y~v~  806 (902)
                      ......--|..+. |..||+=  .++.++.|+-.
T Consensus       181 ~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  181 GGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             SSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT
T ss_pred             CCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC
Confidence            6665567777877 5678865  67888888754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PHA03273 envelope glycoprotein C; Provisional

Probab=80.24  E-value=19  Score=41.64  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=57.4

Q ss_pred             EEEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCC--ccceeccCC-cEEEEeeeeec-Cc-----eeEEeecC-
Q psy12803        301 IVVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGS--WKDSAVASS-TLNFTRINRIN-MG-----AYMCLADN-  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~--~~~~~~~~~-sL~I~~Vt~~D-sG-----~YtC~A~N-  367 (902)
                      ..+.+|+...-.|.+.. .|  ...++|++++..+.....  .......++ ...++-++.++ .+     +.+|.+.= 
T Consensus       245 ~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~  324 (486)
T PHA03273        245 HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY  324 (486)
T ss_pred             CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence            34779999999999987 44  346999998887652111  111212222 12333333333 22     56887742 


Q ss_pred             ------------CCCEEEEcCce-eeeecCceEEEEEEeeccCC--ceEEEEecCC
Q psy12803        368 ------------VPPQILIRNRR-VGVPIGRTATLECEVEAFPL--SVRYWEFIDG  408 (902)
Q Consensus       368 ------------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~  408 (902)
                                  ..|.+...|.. +....|   ...|.+.-.|.  ..+.|..++.
T Consensus       325 rd~vS~~RfsAt~~P~Vy~~P~Is~~F~~G---~AVCtA~CVP~egV~l~W~v~D~  377 (486)
T PHA03273        325 RDEVSFARIAKAGTPSVFVAPTVSVTVEDG---DAVCTAKCVPSTGVFVSWSVNDH  377 (486)
T ss_pred             cCCcceeeccccccCccccCCeEEEEEeCC---EEEEecccccCCCeeEEEEccCC
Confidence                        22333323322 222222   23477777765  6889988773

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	902
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-07
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-07
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-05
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-04
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		5e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		6e-04

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 29/167 (17%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYM 362
             +G  V+L C A G+P P+I+W+ ++ KPI   + +    ++  L      + + G+Y 
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK--SNGILEIPNFQQEDAGSYE 274
Query: 363 CLADNV---------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID 407
           C+A+N                P  + I N  + V +  +   EC+    P     W    
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQPNWVQIIN-DIHVAMEESVFWECKANGRPKPTYRWLKNG 333
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
             L+  D ++     +++G+      LNI+ VN+SD   Y+C+++N+
Sbjct: 334 DPLLTRDRIQ-----IEQGT------LNITIVNLSDAGMYQCVAENK 369

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 29/165 (17%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
           +G  V+L C A G+P P+I+W+ ++ KPI   + +    ++  L      + + G+Y C+
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK--SNGILEIPNFQQEDAGSYECV 275
Query: 365 ADNV---------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT 409
           A+N                P  + I N  + V +  +   EC+    P     W      
Sbjct: 276 AENSRGKNVAKGQLTFYAQPNWVQIIN-DIHVAMEESVFWECKANGRPKPTYRWLKNGDP 334
Query: 410 LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
           L+  D ++     +++G+      LNI+ VN+SD   Y+C+++N+
Sbjct: 335 LLTRDRIQ-----IEQGT------LNITIVNLSDAGMYQCVAENK 368

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 29/187 (15%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           +P   +EG++  + C       P+IIWK      I     +   ++++ L    I + + 
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 167
Query: 359 GAYMC----------------LADNVPPQILIRNRRVGVP--IGRTATLECEVEAFPLSV 400
           G Y C                +  NVPP +  R   V     +G++ TL C+ + FP   
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 401 RYWEFIDGTLIEH---DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
             W   DG  IE+   D  K+  SD          +L I NV+ +D   Y CI++N+   
Sbjct: 228 MSWTK-DGEPIENEEEDDEKHIFSDDSS-------ELTIRNVDKNDEAEYVCIAENKAGE 279
Query: 458 AKGSLIL 464
              S+ L
Sbjct: 280 QDASIHL 286

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 24/180 (13%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGA 360
           +V++ ++ R  C   G P+  ++W   E +      ++ S V S + L    ++  + G 
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 361 YMCLADNV--------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406
           Y C A N               PP    +   V    G    LECE++  P     W   
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 421
Query: 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLIL 464
              L    G KY I      S  ++  ++I NV+ +D   Y+C + N+V  D   GS+ L
Sbjct: 422 KREL--RSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGA 360
           +V++ ++ R  C   G P+  ++W   E +      ++ S V S + L    ++  + G 
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 361 YMCLADNV--------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406
           Y C A N               PP    +   V    G    LECE++  P     W   
Sbjct: 170 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
              L    G KY I      S  ++  ++I NV+ +D   Y+C + N+V
Sbjct: 230 KREL--RSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDV 271

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGA 360
           +V++ ++ R  C   G P+  ++W   E +      ++ S V S + L    ++  + G 
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 361 YMCLADNV--------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406
           Y C A N               PP    +   V    G    LECE++  P     W   
Sbjct: 170 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
              L    G KY I      S  ++  ++I NV+ +D   Y+C + N+V
Sbjct: 230 KREL--RSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDV 271

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 57/191 (29%)
Query: 306 GDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKD-SAVASSTLNFTRINRINMG 359
           G +V L+CVA G+P P I W     K + N    +G +   +    S LN T ++  + G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 360 AYMCLAD------------NVPPQILIRN-RRVGVPIGRTATLECEVEAFPLSVRYWE-- 404
            Y C+A             NV     IR   +  +  G T  + C V  +P+    WE  
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 405 ------------FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452
                       F +GTLI        I +V++                SD  TY C++K
Sbjct: 564 NRALPINRKQKVFPNGTLI--------IENVERN---------------SDQATYTCVAK 600
Query: 453 NEVDI-AKGSL 462
           N+    A+GSL
Sbjct: 601 NQEGYSARGSL 611

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 25/181 (13%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           S ++  EG +  L C  +G+P PS  W   E + I L S K S +  S L  + +   + 
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLRGE-EVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 359 GAYMC--------------LADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE 404
           G Y C              L   VPP  L     +          EC V   P+    W 
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Query: 405 FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                +I  D  +     +  GS      L I  V  SD   Y+C+++NE   A+ S  L
Sbjct: 348 KNGDVVIPSDYFQ-----IVGGS-----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Query: 465 F 465
Sbjct: 398 I 398

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	902
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-41
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-40
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-39
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-38
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-37
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-36
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-18
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-41
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-40
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-39
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-38
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-37
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-36
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-36
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-36
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-34
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-32
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-30
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	9e-27
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-26
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-06
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-24
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-24
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-24
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-23
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-23
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-23
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-23
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-18
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-23
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-21
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-22
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-22
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-06
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-22
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-06
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	8e-22
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	1e-21
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	9e-21
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	2e-20
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	3e-20
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	2e-18
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	3e-13
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	3e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-21
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-14
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-19
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-20
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-16
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-20
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-20
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-04
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-19
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-05
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-19
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-13
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-18
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	1e-18
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	4e-18
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	8e-18
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	4e-17
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	1e-16
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	8e-15
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-18
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-17
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-17
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-17
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-09
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	6e-17
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	4e-16
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	2e-14
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	1e-12
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	1e-12
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	5e-12
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	9e-12
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	3e-11
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	1e-10
1wck_A	220	BCLA protein; collagen-like protein, bacterial sur	1e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-10
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-15
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-13
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-06
2ens_A	96	Advanced glycosylation END product-specific recept	5e-11
2ens_A	96	Advanced glycosylation END product-specific recept	1e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-08
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-10
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-08
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-10
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-08
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	5e-09
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	2e-07
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	4e-07
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	7e-07
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	8e-07
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	2e-06
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	2e-06
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	3e-06
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	3e-04
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	6e-04
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	9e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-08
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	7e-09
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	6e-08
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	6e-08
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	4e-07
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	9e-07
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	1e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	2e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	2e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	3e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	3e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	6e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	9e-06
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	1e-05
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	2e-05
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	2e-05
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	9e-05
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	2e-04
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	9e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	9e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-08
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	1e-07
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	2e-07
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	4e-07
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	1e-06
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	3e-06
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	5e-06
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	2e-05
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	3e-05
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	6e-05
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	6e-05
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	1e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	3e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	5e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	7e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	9e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	7e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-05
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-07
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-06
1nay_A	56	CCP4, collagen-like peptide; collagen assembly, st	2e-06
1nay_A	56	CCP4, collagen-like peptide; collagen assembly, st	4e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-06
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-05
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	5e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	6e-05
2v53_B	33	Collagen alpha-1(III) chain; glycosylated protein,	7e-05
2v53_B	33	Collagen alpha-1(III) chain; glycosylated protein,	1e-04
2v53_B	33	Collagen alpha-1(III) chain; glycosylated protein,	4e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	1e-04
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	3e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-04
1pwb_A	177	SP-D, PSP-D, pulmonary surfactant-associated prote	3e-04
2klw_A	32	(PKG)10; collagen, synthetic peptide, heterotrimer	4e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	8e-04

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  164 bits (417), Expect = 1e-41
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
                  I   G +G  G  G+ G  G  G  G  GPPG  G PG  G  GP+G  G PG
Sbjct: 6   YDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPG 65

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ GK G  G+ G PG  G  G  G  G PG+ G  G +G+DG  G  G  G  G
Sbjct: 66  KNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKG 125

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG+ G NG  G  GPRG  G+ G  G PG  
Sbjct: 126 EPGSPGENGAPGQMGPRGLPGERGRPGAPGPA 157

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  163 bits (415), Expect = 2e-41
 Identities = 64/152 (42%), Positives = 73/152 (48%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             PG +G  G+ G  G  G  G  G  G  G  G  G  G  G  G  G  GP G  G  G
Sbjct: 867  SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAG 926

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            PQG  GD+G+ G +GD G  G  G  G  G PG PG  G  G +G  G  G  G PG  G
Sbjct: 927  PQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAG 986

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             PG +G NG  G  GP G RG++G  G  G P
Sbjct: 987  SPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPP 1018

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  163 bits (415), Expect = 2e-41
 Identities = 67/152 (44%), Positives = 80/152 (52%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G+ GAKG  G  G  G  G PG  GP GP+G  G  G +G  G+ G PG
Sbjct: 219 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPG 278

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G +G+ GP G  G PG  G +G+ G  GEPG  G+PG  G  G PG  G PG DG
Sbjct: 279 NKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADG 338

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  GE+G  GP G +G  G  G PG  
Sbjct: 339 VAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA 370

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  163 bits (414), Expect = 3e-41
 Identities = 67/152 (44%), Positives = 74/152 (48%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  GP G  G  GA G  G  G  G+ G  G  GP GP G  G  G RGP G  G  G
Sbjct: 873  DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRG 932

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             +G  G+EG RG KG  G+ G  G  G  G PGE G  G  G  G  G PG  G PGKDG
Sbjct: 933  DKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDG 992

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            + G  G  G  G  G  G+ G +G  G PG P
Sbjct: 993  LNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPP 1024

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  162 bits (412), Expect = 4e-41
 Identities = 58/152 (38%), Positives = 66/152 (43%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            P G  G  G +GE G  G +G  G  G +G  G  GP G +G  G+EG RG KG  G+ G
Sbjct: 894  PVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSG 953

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             QG PG  G  G +G  G  G  G  G  G  G PG DG+ G  G  G PG  G  G  G
Sbjct: 954  LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAG 1013

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G  G  GP            P   
Sbjct: 1014 PAGPPGPPGPPGPPGPPSGGYDLSFLPQPPQQ 1045

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  162 bits (411), Expect = 5e-41
 Identities = 64/152 (42%), Positives = 74/152 (48%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PPG  G  G  G +G  G+ G +GE G  G  G VGP G +G  G +G RG KG+ G  G
Sbjct: 882  PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEG 941

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             +GI G  G  G +G  G PG  G  G  G  G  G  G PG  G  G  G +GLPG  G
Sbjct: 942  DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIG 1001

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             PG  G  G+ G  GP G  G  G  G P   
Sbjct: 1002 PPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGG 1033

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  162 bits (411), Expect = 5e-41
 Identities = 70/152 (46%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  G+ G  G  G +GERG  G PG  G PG QG  G  G+RGP G MG PG
Sbjct: 783 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPG 842

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G+ G  G  G PGR G  G  G  GE G  G PG  G  G PG  G  GK G
Sbjct: 843 LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG 902

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG +G  G  G  
Sbjct: 903 DRGETGPAGPIGPVGPAGARGPAGPQGPRGDK 934

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (410), Expect = 7e-41
 Identities = 67/152 (44%), Positives = 78/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G KG  G  G  G KG+ G KG PG  G  GP G  G+EGKRG +G+ G  G
Sbjct: 258 PEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSG 317

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  G +G  G  G  G  G  G  G PG  G  G  G  G PG+ GLPG  G
Sbjct: 318 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKG 377

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G+ G+ G  G TGP G  G+ G  G  G P
Sbjct: 378 LTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPP 409

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (410), Expect = 8e-41
 Identities = 65/152 (42%), Positives = 77/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  GA G+ G KG  G  G  G  G PG +G  G EG  G  G  G  G
Sbjct: 213 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSG 272

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG++G  G KG+ G  G  G  G  G  G+ G  G PG +G+ G PG+ G PG  G
Sbjct: 273 EPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRG 332

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G KG  G RG+ G +G  G PG  
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 364

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (410), Expect = 8e-41
 Identities = 65/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G+ GV G  G++G  G  G PGP G PG +G  G  G+ G PG
Sbjct: 777 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 836

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  G  G  G PG  G  GRDG PG  G  G  G  G  G PG  G PG  G
Sbjct: 837 PMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG 896

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  GE G  GP G  G +G  G  G  
Sbjct: 897 PAGKSGDRGETGPAGPIGPVGPAGARGPAGPQ 928

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (410), Expect = 9e-41
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G +G  G  G  G  G  G  G PG  G PG +G  G  G  G  G  G  G
Sbjct: 195 PEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 254

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GPKG+ G PG  G  G  G  GEPG  G+ G  G  G  GK G  G+ G
Sbjct: 255 PSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPG 314

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  G RG  G  G+ G  G  
Sbjct: 315 PSGLPGPPGERGGPGSRGFPGADGVAGPKGPA 346

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (410), Expect = 9e-41
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  GA+G  G +G  G  G  G  G PG  G  GD G +G  G  G  G
Sbjct: 237 ANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQG 296

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+EGKRG +G+ G  G  G  G  G PG  G  G  G  G  G  G+ G PG  G
Sbjct: 297 PPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG 356

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G  G  G  G +G +G  G PG  
Sbjct: 357 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD 388

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (409), Expect = 1e-40
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G +G  G  G  G +G +G  G PG  G  GP G  G  G  G  GD G  G
Sbjct: 15  VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG 74

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  GP+G  G PG  GL G  G  G  GLDG  G  G  G  G+ G PG++G
Sbjct: 75  KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG 134

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G +G  G  G  
Sbjct: 135 APGQMGPRGLPGERGRPGAPGPAGARGNDGAA 166

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (409), Expect = 1e-40
 Identities = 62/152 (40%), Positives = 76/152 (50%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G +G  G +G  G  G  G KG+RGE G  G  G PG  G PG  G  G  GD G  G
Sbjct: 849  ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 908

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            P G  G  G  G +G  G  G  G  G  G  G+ G+ G  G +G+ G PG  G PG+ G
Sbjct: 909  PAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQG 968

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G +G  G +G  G  G+ GK G+NG+PG  
Sbjct: 969  PSGASGPAGPRGPPGSAGSPGKDGLNGLPGPI 1000

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (409), Expect = 1e-40
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  G+ G  G  G +G++G  G  GPPG  G PG  G  GP G  G  G
Sbjct: 846 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 905

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  G  G  G  GE G  GI G  G  G+ G  G PG  G
Sbjct: 906 ETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPG 965

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G +G  G  GP G+ G  G +G+ G P
Sbjct: 966 EQGPSGASGPAGPRGPPGSAGSPGKDGLNGLP 997

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (409), Expect = 1e-40
 Identities = 61/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  GA G  G +G  G +G  G  GP G  G PG  G +G  G  G PG
Sbjct: 231 QPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPG 290

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G+ G  G  G +G  G  G  G  G  G PGE G  G  G  G DG+ G  G  G+ G
Sbjct: 291 PAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG 350

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G  G+ G+P
Sbjct: 351 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP 382

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (409), Expect = 1e-40
 Identities = 68/152 (44%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G KG+ GAKGE G  G +G  G  G  G  G +G PG  G  GP G+ G PG
Sbjct: 270 NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPG 329

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG +G  GPKG  G  G  G  G  G PGE G  G  G  G  G+ G  G PG DG
Sbjct: 330 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 389

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  GP G  G  G  GV G P
Sbjct: 390 KTGPPGPAGEDGRPGPAGPPGARGQAGVMGFP 421

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (408), Expect = 1e-40
 Identities = 64/152 (42%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PGL GP G+ G+ G  G  G +G  G  G PG+ GPPG  G  G  G  G  G  G PG
Sbjct: 810 FPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPG 869

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G+ G  GP G  G PG  G  G  G  G+ G  G  G  G  G  G  G  G  G
Sbjct: 870 AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQG 929

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  G +G+RG SG+ G PG P
Sbjct: 930 PRGDKGETGEEGDRGIKGHRGFSGLQGPPGPP 961

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  161 bits (408), Expect = 1e-40
 Identities = 65/152 (42%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G KGE G  G  G  G  GE+G  G  G PGP G+PG  G+RG  G  G+PG
Sbjct: 276 APGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPG 335

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G +G  G +G  G  G  G  G  G PGE GL G  G  G  G PG DG  G  G
Sbjct: 336 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG 395

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  G RG  G  G  G  G  
Sbjct: 396 PAGEDGRPGPAGPPGARGQAGVMGFPGPKGAA 427

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (407), Expect = 2e-40
 Identities = 60/152 (39%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G +G  G++G  GV+GE G  G  G  GP G  G  G  G +G  G  G  G
Sbjct: 186 AVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 245

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP+G  G PG  G  G  G PG  G  G  G  G  G+ G  G  G++G
Sbjct: 246 APGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEG 305

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ GP G RG  G  G PG  
Sbjct: 306 KRGARGEPGPSGLPGPPGERGGPGSRGFPGAD 337

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (407), Expect = 2e-40
 Identities = 62/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  G KG  GE GAPG  G  G +G PG  G +GP G  G  G
Sbjct: 246 APGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEG 305

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G+ G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G PG+ G
Sbjct: 306 KRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAG 365

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G KG+TG  G+ G  G  G PG  
Sbjct: 366 RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPA 397

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (407), Expect = 2e-40
 Identities = 64/152 (42%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G KGE G  G  G  G  G  G  G  GP G  G PG +G RG  G  G  G
Sbjct: 654 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATG 713

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G+ G PG  G  G++G  G  G  G  GR G  G PG  G  G+ G
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKG 773

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G  G  GP+G  G+ G+ G+PG  
Sbjct: 774 APGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 805

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (407), Expect = 2e-40
 Identities = 67/152 (44%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G+ G  GA+G  G +G RGE G PG  G  GP G PG +G+ G KG  G PG
Sbjct: 183 FPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG 242

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G RGP G  G  G  G  G  G PG PG  G  G  G  G  G  G PG  G
Sbjct: 243 IAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAG 302

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G +G  G  G+ G  G  G P
Sbjct: 303 EEGKRGARGEPGPSGLPGPPGERGGPGSRGFP 334

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (406), Expect = 2e-40
 Identities = 62/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G++G  G  G  G  G++G  GA G  GPPGP G PG  G  G  G  G PG
Sbjct: 798 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG 857

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG +G  G KGD G  G  G  G  G PG PG  G  G++G  G  G  G  G  G
Sbjct: 858 AEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVG 917

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G +G  G+ G  G+ G  
Sbjct: 918 PAGARGPAGPQGPRGDKGETGEEGDRGIKGHR 949

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (406), Expect = 2e-40
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  GP G +G  G  GE G  G  G +G PG  G  G  G  G  G+ G +G  G  G
Sbjct: 30  PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 89

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+PG  G  G KG  G+ G  G  G  G  G  G  G PG NG  G  G  GLPG+ G
Sbjct: 90  ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERG 149

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G  G  G  G  G  G P
Sbjct: 150 RPGAPGPAGARGNDGAAGAAGPPGPTGPTGPP 181

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (406), Expect = 2e-40
 Identities = 58/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              + GP+G  G  G  G  G  G +G +G PG  G PG  G  G  G  GP G  G  G
Sbjct: 12  GISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDG 71

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G+RGP G  G  G  G  G  G+ G  G  G+ G  G  G  G  G PG  G
Sbjct: 72  EAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG 131

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G+ G RG  G  G  G  G  
Sbjct: 132 ENGAPGQMGPRGLPGERGRPGAPGPAGARGND 163

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (406), Expect = 2e-40
 Identities = 64/153 (41%), Positives = 77/153 (50%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G +GP G  G  G  GE G  G +G+ GA G  GP G QG PG  G+ G +G  G P
Sbjct: 254 GPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEP 313

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G+PG  G+RG  G  G+PG  G+ G  G  GE G  G  G  G  G  G+ G  G  
Sbjct: 314 GPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 373

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G+ G  G  G  G  G +G +G PG  
Sbjct: 374 GAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPA 406

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (406), Expect = 3e-40
 Identities = 67/152 (44%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  G +G  G  GE GE GA G +GP GP G PG  G  G  G  G PG
Sbjct: 21  PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG 80

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG +G RG  G  G PG  G  G  GL G  G  G  G  G  G PG++G PG+ G
Sbjct: 81  ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 140

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG  G  G  G P
Sbjct: 141 PRGLPGERGRPGAPGPAGARGNDGAAGAAGPP 172

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  160 bits (406), Expect = 3e-40
 Identities = 67/152 (44%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G+ GE+G  G  G  GE+G  GA G  G PG  G  G  G+RG  G  G  G
Sbjct: 747 PRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG 806

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  G  G  G  G  G  G  G  G PGL G PG +G +G PG +G PG+DG
Sbjct: 807 ERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG 866

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G  GP G  G  G  G  G  
Sbjct: 867 SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 898

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 59/148 (39%), Positives = 67/148 (45%)

Query: 115 QGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGI 174
           +   G   +       G  G  G +G PG  G PGPQG  G  G+ G  G  G  GP+G 
Sbjct: 1   EMSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 60

Query: 175 PGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 234
           PG  GK G  G+ G PGR G  G  G  G  GL G  G  GM G  G  GL G  G  G 
Sbjct: 61  PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 120

Query: 235 NGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            G  GE G  G  G  G+ G  G+PG  
Sbjct: 121 AGPKGEPGSPGENGAPGQMGPRGLPGER 148

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 62/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG+ G  G  G  G  G  G  G  G KG  G  G PG +G  G +G+ GP G  G PG
Sbjct: 240 APGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPG 299

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG  G  G PG  G  G  G  G PG DG+ G  G  G  G  G  G  G
Sbjct: 300 PAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 359

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G+ G +G  G  G  G  G  
Sbjct: 360 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT 391

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 63/152 (41%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  GAPG  G  G  G PG++G  G KG+ G  G
Sbjct: 234 AKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAG 293

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG PG  G+ G +G  G PG  GL G  G  G PG  G PG +G+ G  G  G  G  G
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 353

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ GE G  G  G  G  G+ G PG+P
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP 385

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 56/152 (36%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G +G  G +G  G  G +G  G PG  G  G  G  G+ G  G +G  G  G
Sbjct: 243 IAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAG 302

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G+ GP G  G PG  G  G  G PG  G+ G  G  G  G PG  G  G  G
Sbjct: 303 EEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG 362

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G+ G  G +G  G P
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPP 394

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 68/152 (44%), Positives = 80/152 (52%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G QGP G+ GE GA G MG +G  G  G  G  G  G  G PG+ G  GP+G  G PG
Sbjct: 36  PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 95

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG +G RG  G  G  G  G  G  G PG PG +G PG+ G  G+PG+ G PG  G
Sbjct: 96  TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPG 155

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  GP G  G +G  G PG  
Sbjct: 156 PAGARGNDGAAGAAGPPGPTGPTGPPGFPGAV 187

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 61/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  GE G +G  G  GERG  G  G  G  GP G  G EG  G +G  G  G
Sbjct: 807 ERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG 866

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  GD G+ GP G  G PG  G  G  G  G+ G  G  G  G  G  G  G  G  G
Sbjct: 867 SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAG 926

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  G RG +G  G +G+ G P
Sbjct: 927 PQGPRGDKGETGEEGDRGIKGHRGFSGLQGPP 958

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (405), Expect = 3e-40
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  GP G  G  GA G +G  G+ G++G  G  GP GP G  G  G  GP+G  G  G
Sbjct: 876  ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKG 935

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
              G  GD G +G +G  G  G  G  G  G  G  G  G  G  G  G  G  G  G +G
Sbjct: 936  ETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNG 995

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            +PG  G  G +G TG  G  G  G  G PG P
Sbjct: 996  LPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPP 1027

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (404), Expect = 4e-40
 Identities = 67/152 (44%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G KGE G  G  G  G RG  G  G  GPPGP G  G  G  G  G  G PG
Sbjct: 609 PPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 668

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  GD G  GP G  G PG IG  G  G  G  G  G PG  G  G  G+ G PG  G
Sbjct: 669 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSG 728

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G RG++G  G PG  
Sbjct: 729 NAGPPGPPGPAGKEGSKGPRGETGPAGRPGEV 760

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (404), Expect = 4e-40
 Identities = 68/152 (44%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  GE GA G  G  G +GE G  GV GPPGP G  G  G RG  G  G PG
Sbjct: 261 PSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPG 320

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG  G  G  G  G  G  G PG  G  G PG  G  G  G  G  G  G
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 380

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG+ G +G+ G  GP G  G+ G  G PG  
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGAR 412

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (404), Expect = 4e-40
 Identities = 56/153 (36%), Positives = 66/153 (43%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              G +G  G +G  G +GE G  G  G  G  G  G  G  G  G  G  G  G  G+P
Sbjct: 191 GEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 250

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G +G  G EG  G  G  G  G  G  G  G  G  G  G  G  G  G  G++G  G  
Sbjct: 251 GARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGAR 310

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG +G  G  G  G  G+RG  G +GV G  
Sbjct: 311 GEPGPSGLPGPPGERGGPGSRGFPGADGVAGPK 343

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (404), Expect = 5e-40
 Identities = 62/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G           G  G  G +G  G  GAPG  G  GP G PG+ G  GP G  G PG
Sbjct: 3   SYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPG 62

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  GD+G+ G  G  G  G  G  G  GLPG  GL G+ G  G  G+ G  G  G  G
Sbjct: 63  PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 122

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ GE G  G  G RG  G  G PG P
Sbjct: 123 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAP 154

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (403), Expect = 5e-40
 Identities = 62/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G KG  G  G  G KG  G  G PGP G+ G  G  G +G  G  G
Sbjct: 252 ARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARG 311

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G  G  G  G DG  G  G  G  G PG  G  G PG+ G PG+ G
Sbjct: 312 EPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAG 371

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  GP G  G  G  G  G P
Sbjct: 372 LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRP 403

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (403), Expect = 5e-40
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +GP G +GE G  G  G  G  G  GA G  G  G  G PG  G  G  G  G  G
Sbjct: 198 ARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 257

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G +G  G+ G PG  G  G  G PG  G+ G PG  G +G  G  G PG  G
Sbjct: 258 PEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSG 317

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G  G  G +G  G  G  
Sbjct: 318 LPGPPGERGGPGSRGFPGADGVAGPKGPAGER 349

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (403), Expect = 6e-40
 Identities = 64/152 (42%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G +G  GA G  G  G  G  G PG  G  G +G  G EG RG +G  G  G
Sbjct: 150 RPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRG 209

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G+ G  G+ G  G +G PG  G  G PG  G  G  G  G PG  G
Sbjct: 210 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKG 269

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G KG TG +G  G +G+ G PG  
Sbjct: 270 NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPA 301

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  159 bits (403), Expect = 6e-40
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G  G  GEKGAPG  GP G  G PG +G  G +G +G PG
Sbjct: 744 SKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPG 803

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  GP G+ G  G  G  G  G PG  G  G+ G  G  G  G  G  G  G
Sbjct: 804 QRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG 863

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G++G TGP G  G  G  G PG  
Sbjct: 864 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPV 895

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 6e-40
 Identities = 61/152 (40%), Positives = 74/152 (48%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             PG  GP+G  G+ G +GE G  G  G  G  G  GP GPQG  GD+G+ G +GD G  G
Sbjct: 888  APGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKG 947

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             +G  G +G  GP G  G  G  G  G  G  G PG  G PG++G++G+PG  G PG  G
Sbjct: 948  HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRG 1007

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G  G  GP G  G           
Sbjct: 1008 RTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFL 1039

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 6e-40
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G +G  G  G  GA G  G  G  G  G  G  G  GP G  G  G  G +G  G  G
Sbjct: 870  AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQG 929

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            P+G  G+ G+ G +G  G+ G  GL G  G PG PG  G  G +G  G  G  G  G  G
Sbjct: 930  PRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPG 989

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G NG  G  G  GPRG  G +G  G PG P
Sbjct: 990  KDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPP 1021

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  GA G  G +G  GE G PG  GP GP+G PG  GK G  G+ G PG
Sbjct: 18  PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 77

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G +G  G  G  G+ G  G  G  G  G  G  G  G PG  G  G  G
Sbjct: 78  RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG 137

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  G  G  G  G +G  G  
Sbjct: 138 QMGPRGLPGERGRPGAPGPAGARGNDGAAGAA 169

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 63/152 (41%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  G  G  G  G  G +G  GAPG+ G PG  G  G  G  GP G  G  G
Sbjct: 210 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKG 269

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G +G  G  G PG  G+ G  G  GE G  G  G  G  G+PG  G  G  G
Sbjct: 270 NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPG 329

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  GP G RG  G  G  G+P
Sbjct: 330 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSP 361

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 63/152 (41%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G+ G KGA G  G  G  G PG  G  GP+G  G PG
Sbjct: 207 VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPG 266

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G+ G  G KGD G  G  G  G  G PG  G +G  G  G  G  G  G PG+ G
Sbjct: 267 PKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERG 326

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG+ G  G  G+ GP+G  G+ G  G  G  
Sbjct: 327 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 358

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 65/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  GP G  G IG  G  G KG RG  G PG  G PG  G  G  G  G  G  G PG
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPG 737

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G +G RG  G  G PG +G  G  G  GE G  G  G  G  G PG  G+ G+ G
Sbjct: 738 PAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRG 797

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  GE+G  G  G  G+ G  G  G  
Sbjct: 798 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGAS 829

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +GP G+ G  G  GE+G  G  G  G  G  G  GP G PG  G +G  G  G  G
Sbjct: 741 KEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVG 800

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G  G PG+ G  G  G  G PG  G PG  G  G  G++G PG +G
Sbjct: 801 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 860

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G+ G KG  G  G  G  G  G PG P
Sbjct: 861 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 892

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 63/152 (41%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G +GE G  G  G  G  G  G PG  G PG  G  GD G  GP G  G PG
Sbjct: 630 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPG 689

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G +G +G  G PG  G  G  G  G PG  G  G  G  G  GK+G  G  G
Sbjct: 690 PIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRG 749

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  GP G  G+ G  G  G  
Sbjct: 750 ETGPAGRPGEVGPPGPPGPAGEKGAPGADGPA 781

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  GV+G  G  G  G  G  G  G  G  G  G +G  G  G
Sbjct: 273 EPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRG 332

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +GP G+ G PG  G  G  G  G PG  G+PG  G+ G PG  G  GK G
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 392

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +G  G  GP G RG++G+ G PG  
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPK 424

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 7e-40
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +GP G +G  GA G  G  GE G  G  G  G  G  G  G +G  GP G+ G  G
Sbjct: 249 FPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRG 308

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  GP G+ G PG  G  G DG+ G  G  G  G  G  G  G  G  G+ G
Sbjct: 309 ARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 368

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  GK+G  G  G  
Sbjct: 369 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGED 400

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 8e-40
 Identities = 57/152 (37%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
                   G  G  G +G  G  G  G +G  G  G PG  G  G  G RGP G  G  G
Sbjct: 9   KSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNG 68

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G +G  G  G  GL G  GLPG  G  G  G +G  G  G  G  G+ G
Sbjct: 69  DDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG 128

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG NG  G+ G  G  G RG+ G  G  G  
Sbjct: 129 SPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 160

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 8e-40
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  GQ G  GA G  G+ G  G  GA G  GP GP G PG +G  G  G  G  G
Sbjct: 222 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKG 281

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G +G  G  G  G  G  G PG  GL G PG  G  G  G  G  G  G
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAG 341

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP+G+ G++G  G  G P
Sbjct: 342 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 373

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 8e-40
 Identities = 65/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G +G  G +GE G  G PG VGPPGP G  G++G  G  G  G PG
Sbjct: 726 PSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPG 785

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+RG  G  G  G  G  G  G  GEPG  G  G +G  G PG  G PG  G
Sbjct: 786 TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 845

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G  G  G  G  G  G  G  G  
Sbjct: 846 PPGESGREGAPGAEGSPGRDGSPGAKGDRGET 877

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (402), Expect = 8e-40
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G +G  G  G  GE G +GAPG  G PG  G PG +G RG  G  G PG
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPG 884

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G  G  G  G  G  G  G  G  G  G  G  G  G+ G  G  G
Sbjct: 885 APGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRG 944

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G  G +G +G  GP G+ G+ G +G  G  
Sbjct: 945 IKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 976

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (401), Expect = 9e-40
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G++G  GA GE G  G  G  G  G  G  G +G PG EG  G  G  G  G
Sbjct: 813 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 872

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G  G  G PG +G  G+ G  GE G  G  G  G  G  G  G  G  G
Sbjct: 873 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRG 932

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G++G+ G RG  G  G  G PG+P
Sbjct: 933 DKGETGEEGDRGIKGHRGFSGLQGPPGPPGSP 964

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (401), Expect = 1e-39
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G+ G  G  GE+G PG +GPPG  G PG+ G+ G  G  G PG
Sbjct: 804 QRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG 863

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G RG  G  G PG  G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 864 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARG 923

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+KG TG  G+RG  G  G  G  
Sbjct: 924 PAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQ 955

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (401), Expect = 1e-39
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G++G  G  G  GA G  G  G  G+ GA G  G PG  G PG  G RGP G  G  G
Sbjct: 204 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSG 263

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G+ G  G+ G  G  G  G  G+ G PG  G  G+ G  G PG  GLPG  G
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPG 323

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G  G  G  G +G +G  G PG  
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPA 355

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  158 bits (401), Expect = 1e-39
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G KG+ G  G  G  G  GE GAPG +GP G  G  G  G  GP G  G  G
Sbjct: 105 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDG 164

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G+PG +G  G  G  G  G +G  G  G  G PG  G  G  G
Sbjct: 165 AAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAG 224

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G KG  G  G  G  G  G  G  
Sbjct: 225 NPGADGQPGAKGANGAPGIAGAPGFPGARGPS 256

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (400), Expect = 1e-39
 Identities = 67/152 (44%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G +GAKGE G +G RG +G  GV G PGP G  G  G  G  G  G PG
Sbjct: 174 PTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPG 233

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G  G  G  G  G +G  G PG  G  G PG  G  G  G  G PG  G
Sbjct: 234 AKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAG 293

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  GE+G  G RG  G SG+ G PG  
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGER 325

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (400), Expect = 1e-39
 Identities = 67/152 (44%), Positives = 78/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +G  G  G  G  G  G  G PG  G  GP G PG  GK G KG  G  G
Sbjct: 693 NVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETG 752

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG+ G  GP G  G  G  G DG  G PG PG  GI G+ G+ G+PG+ G  G  G
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG 812

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG +G  G++G +G  G RG  G  G PG  
Sbjct: 813 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLA 844

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (400), Expect = 1e-39
 Identities = 68/152 (44%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G +G  G  G KGA G  GPPG  G PG  G+ GP G  G  G
Sbjct: 672 AKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG 731

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  GK G KG  G  G  G  G  G PG PG  G  G  G DG  G  G PG  G
Sbjct: 732 PPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQG 791

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G  G  G  G  G RG  G  G +G PG  
Sbjct: 792 IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 823

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (400), Expect = 1e-39
 Identities = 63/152 (41%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G +G+ G +GE G  G PG  G  G  G  G  G  G  G  G  G
Sbjct: 288 EPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAG 347

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G +G  G+ G PG  GL G  GL G PG  G  G+ G  G  G+DG PG  G
Sbjct: 348 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAG 407

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP+G  G+ G  G  G P
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVP 439

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (400), Expect = 1e-39
 Identities = 62/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G +G  G  GE G  G  G  G  G  GPPG  G  G+ GK G  G+ G PG
Sbjct: 27  LPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG 86

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           PQG  G  G  G  G  G+ G  GLDG  G  G  G  G PG  G +G PG+ G  G  G
Sbjct: 87  PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPG 146

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G  G  G  
Sbjct: 147 ERGRPGAPGPAGARGNDGAAGAAGPPGPTGPT 178

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (400), Expect = 1e-39
 Identities = 64/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPGL GP G+ G  GA G  G  G  G  GA G  G  GP G PG  G  G  G +G  G
Sbjct: 840 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 899

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  GP G +G  G  G  G  G  G+ G  G  G  G+ G  G  GL G  G
Sbjct: 900 KSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPG 959

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG+ G  G  G +GP G RG  G  G PG  
Sbjct: 960 PPGSPGEQGPSGASGPAGPRGPPGSAGSPGKD 991

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (399), Expect = 2e-39
 Identities = 56/152 (36%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  GE G +G  G  G  G  GP GP G+ G  G+ G +G  G  G
Sbjct: 801 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 860

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G +G+ G  G  G  G  G PG  G  G  G  G  G  G  G  G  G
Sbjct: 861 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAG 920

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G  G  G  GI G  G  
Sbjct: 921 ARGPAGPQGPRGDKGETGEEGDRGIKGHRGFS 952

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (399), Expect = 2e-39
 Identities = 65/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  GE G  G  G  G RG  GA G  GPPGP G  G  G  G  G  G  G
Sbjct: 135 APGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAG 194

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G EG +G +G+ G PG  G  G  G PG  G  G  G NG  GI G  G PG  G
Sbjct: 195 PEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 254

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  G  G  G  G  G  G  
Sbjct: 255 PSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAK 286

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (399), Expect = 2e-39
 Identities = 64/152 (42%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G+ G  G  G  G  G RG  G  G  G PGP G  G++G  G  G  G  G
Sbjct: 117 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTG 176

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  G KG+ G  G  G +G  G+ GEPG  G  G  G  G PG DG PG  G
Sbjct: 177 PTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKG 236

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RG  G  G +G PG  
Sbjct: 237 ANGAPGIAGAPGFPGARGPSGPEGPSGAPGPK 268

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (399), Expect = 2e-39
 Identities = 63/152 (41%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  G  GE G  G  G  G RG  G PG  G  G  G PG  G+RGP G  G  G
Sbjct: 33  APGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARG 92

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G +G  G  G  G  G  G  GEPG  G  G  G  G  G  G  G+ G
Sbjct: 93  LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 152

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G +G  G PG P
Sbjct: 153 APGPAGARGNDGAAGAAGPPGPTGPTGPPGFP 184

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (399), Expect = 2e-39
 Identities = 55/152 (36%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G++G  G  G  G+ G  GE G  G  G  G  G  G  G +G +G+ G  G
Sbjct: 822 KQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG 881

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  GP G  G  G  G  G  G  G  G  G  G  G  G  G  G  G++G
Sbjct: 882 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEG 941

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ GP G  G  G  G  G  
Sbjct: 942 DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGAS 973

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (399), Expect = 2e-39
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G+ G  G+ G  G  G  GP G +G+PG  G  G KG  G+ G
Sbjct: 51  ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSG 110

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  GD G  GPKG+ G PG  G  G+ G  G PG  G PG  G  G  G DG  G  G
Sbjct: 111 LDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAG 170

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G +G++G  G  G+ 
Sbjct: 171 PPGPTGPTGPPGFPGAVGAKGEAGPEGARGSE 202

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 61/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  G  G+ G KG RGE G  G  G  GP G PG  G++G  G  G  G
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAG 782

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G  G +G +G PG+ G  G  GLPG  G  G  G +G  G  G  G  G  G
Sbjct: 783 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPG 842

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G +G +G  G  G+ G+ G  G  G  
Sbjct: 843 LAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 874

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 54/152 (35%), Positives = 65/152 (42%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            P G  G  G+ G  G  G +G  G RG  G  G  G  G  G  GD G +G +G  G  G
Sbjct: 897  PAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQG 956

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            P G PG  G++GP G  G  G  G  G  G PG+ GL+G+PG  G  G  G+ G  G  G
Sbjct: 957  PPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAG 1016

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             PG  G  G  G      +             
Sbjct: 1017 PPGPPGPPGPPGPPSGGYDLSFLPQPPQQKAH 1048

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 66/152 (43%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  GP G+KG  GA G  G  G  G +G  G  G  G  G  G+ G  G  G  G PG
Sbjct: 762 PPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG 821

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG  G  G+RGP G MG PG  G  G  G  G PG +G PGR+G  G  G  G  G  G
Sbjct: 822 KQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG 881

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  G  G  G  G  
Sbjct: 882 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPI 913

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  GP G  G  GA G  G  G  G +G+ G  G  G  G PG  G  GP G+ G  G
Sbjct: 171 PPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG 230

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G+PG  G  G +G  G PG  G  G  G  G  G  G  G+ G
Sbjct: 231 QPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPG 290

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RG RG+ G +G+PG P
Sbjct: 291 PAGVQGPPGPAGEEGKRGARGEPGPSGLPGPP 322

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  G  G+ GE G PG  G  GP G  G  G  G  G  G  G
Sbjct: 45  EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG 104

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G +G +G  G  G  G  G  G +G PG+ G  G+PG  G  G PG  G  G DG
Sbjct: 105 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDG 164

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G TGP G  G  G  G  G  
Sbjct: 165 AAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPE 196

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G IG  G  G  G++GE G  G  GP G +G PGD G+ GP G  G+ G
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAG 653

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G +G  GD G  G  G  G  G  G PG  G  G  G  G  G  G PG  G
Sbjct: 654 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATG 713

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G +G  G  G  G  G  G+ 
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSK 745

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 68/152 (44%), Positives = 80/152 (52%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL GP G +G+ G KG  G  G+ G +G  G +GPPGP G PGD+G+ GP G  G  G
Sbjct: 573 AAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTG 632

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PGD G+ GP G  G+ G  G DG+ G  GEPG  G  G  G  G  G  G PG  G
Sbjct: 633 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 692

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G  G  G  G  G P
Sbjct: 693 NVGAPGPKGARGSAGPPGATGFPGAAGRVGPP 724

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 59/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  GQ+G +G  G+ G +G  G  G  G  G  GP G  G+ G  GP G  G  G
Sbjct: 786 TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 845

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G EG  G +G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  G
Sbjct: 846 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 905

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RG  G  G  G  G  
Sbjct: 906 ETGPAGPIGPVGPAGARGPAGPQGPRGDKGET 937

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  157 bits (398), Expect = 2e-39
 Identities = 61/150 (40%), Positives = 66/150 (44%)

Query: 113 GLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQ 172
              G   +   I   G MG  G RG  G PG  GP G QG PG+ G+ G  G MG  GP 
Sbjct: 2   MSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPP 61

Query: 173 GIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 232
           G PG  G  G  G  G PG  G  G  G  G PG  G+PG  G  G  G DG  G  G  
Sbjct: 62  GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPA 121

Query: 233 GTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G  G  G  G  G  G+ G  G P
Sbjct: 122 GPKGEPGSPGENGAPGQMGPRGLPGERGRP 151

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 63/152 (41%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G +G +G +G  G  G PG  G PG  G  G KG  G  G
Sbjct: 720 RVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADG 779

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G +G  G  G  G  G  G  G PG PG  G PG+ G  G  G+ G PG  G
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMG 839

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G  G  G  G  G +G PG  
Sbjct: 840 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAK 871

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 57/152 (37%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G QG  G+ G  G  G  G  G  G  G PG  G  G  GI G  G  G +G  G  G
Sbjct: 201 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEG 260

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG +G  G  G  G  G  G  G  G  G  G  G  G  G  G  G+ G  G  G
Sbjct: 261 PSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPG 320

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G  G  G  G  G  G+P
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSP 352

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 68/152 (44%), Positives = 77/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G+ G+ G  GE G  G +G +G PG  G PG +G  G  G  G KGD G  G
Sbjct: 63  PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 122

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G PG  G+ G  G MG  G  G  GR G PG  G  G  G  G  G PG  G  G  G
Sbjct: 123 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPG 182

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G  G RG+ G  G+ G PG P
Sbjct: 183 FPGAVGAKGEAGPEGARGSEGPQGVRGEPGPP 214

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P GL G  G+ G  G  G  G  G  G  G PG  GP GP G PG  G +G  G  G  G
Sbjct: 141 PRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARG 200

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G+ GP G  G  G  G  G DG PG  G +G PG  G  G PG  G  G +G
Sbjct: 201 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEG 260

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  GN+G +G  G PG  
Sbjct: 261 PSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPA 292

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 59/152 (38%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G KG+ G  G  G  G  G+ G  G+ GP GP G  G  G +G  G  G  G
Sbjct: 570 ERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAG 629

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG  G  G  G  G  G DG PG  G  G  G  G  G PG  G  G  G
Sbjct: 630 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPG 689

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G KG  G  G  G +G  G  G  
Sbjct: 690 PIGNVGAPGPKGARGSAGPPGATGFPGAAGRV 721

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 61/152 (40%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  GA G +G  G  G  G PG  GP G +G  G  G+ GP G  G  G
Sbjct: 702 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVG 761

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G++G  G  G  G  G  G  G+ G+ G+ G+PG+ G  G PG  G  G+ G
Sbjct: 762 PPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG 821

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G +GE+G  GP G  G +G  G  G  
Sbjct: 822 KQGPSGASGERGPPGPMGPPGLAGPPGESGRE 853

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 66/152 (43%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G +G+RG +G PG  G PGP G  G  G RG  G  G  G
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAG 341

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G+ G  GP G  G PG  G  G  GLPG  GL G PG  G DG  G  G  G+DG
Sbjct: 342 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDG 401

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G  G  G  G  G PG  
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKA 433

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (397), Expect = 3e-39
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G++G +G  G +G  G  G  G  G  G  G  G  G  GP G  G+PG
Sbjct: 126 EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPG 185

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G +G  G  G  G  G  G  G  G  G PG +G  G  G +G PG  G
Sbjct: 186 AVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 245

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  G  G +G PG P
Sbjct: 246 APGFPGARGPSGPEGPSGAPGPKGNSGEPGAP 277

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  G  G  G  G+ G  G +GE G  G PG  G PG  G  G  GK G +G+ G  G
Sbjct: 852  REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 911

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            P G  G  G RGP G  G  G  G  G +G  G  G  G  G  G  G PG  G  G  G
Sbjct: 912  PIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG 971

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G  G  G  G  G +G+ G  G P
Sbjct: 972  ASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPP 1003

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +G  G  G  G+KG RG  G  G  G  GP G  G+ G  G  G  G  G
Sbjct: 81  ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 140

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G+PG+ G+ G  G  G  G  G  G  G PG  G  G PG  G  G  G+ G  G  G
Sbjct: 141 PRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARG 200

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  GP G  G +G  G  G P
Sbjct: 201 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 232

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  G  G KG  G  G  G  G PG  G  G +G+ G  G+RG +G  G PG
Sbjct: 756 RPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG 815

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG +G  G  G+ G PG +G  G  G PGE G +G PG  G  G  G  G  G  G
Sbjct: 816 PSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRG 875

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G +G  G  
Sbjct: 876 ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGET 907

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 65/152 (42%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G++G+ GA+GE G  G  G  G  G  G  G  G  G  G +GP G+ G PG
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 353

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G+ G  G+ G PG  GL G  G PG  G  G PG  G DG PG  G PG  G
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARG 413

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G KG  G  G  G+ G+ G PG  
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 445

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 54/152 (35%), Positives = 60/152 (39%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             PG  G  G  G  G  G+ G  G  G  G  G  G  GP G  G  G +G  G+ G  G
Sbjct: 885  APGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRG 944

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             +G  G  G +GP G  G PG  G  G  G  G  G  G  G  G DG+ G  G  G  G
Sbjct: 945  IKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPG 1004

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G  G  GP G  G  G        
Sbjct: 1005 PRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDL 1036

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 62/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  GE G +G  G  G RG  GAPG  G  G  G PG  G +G  G  G PG
Sbjct: 510 PSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPG 569

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G +G +GD G  G  G  G+DG+ G  G  G PG  G  G  G+ G  G  G
Sbjct: 570 ERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAG 629

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G++G  GP G  G +G  G  G P
Sbjct: 630 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQP 661

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P GL GP G  G  G +G  G  GE G  G  G  GPPGP G  GD+G+ G  G  G  G
Sbjct: 24  PRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERG 83

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G DG  G+ G  G  G  G  G  G  G  G  G
Sbjct: 84  PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 143

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G RGN G +G  G PG  
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPT 175

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G +G  G +GE G  G  G  G PG  G PG +G PGD G +G  G  G  G
Sbjct: 624 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 683

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  G  G  G  G  G  G  G PG  G  G PG +G  G PG  G  GK+G
Sbjct: 684 PAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 743

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G P
Sbjct: 744 SKGPRGETGPAGRPGEVGPPGPPGPAGEKGAP 775

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (396), Expect = 4e-39
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP+G  G  G  GE G +G  G +G+PG  G PG +G  G+ G  GP G  G PG
Sbjct: 831 ERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 890

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  GK G +G+ G  G IG  G  G  G  G  G  G  G  G  G  G+ G  G
Sbjct: 891 APGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRG 950

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G  G SG  G  G P
Sbjct: 951 FSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP 982

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G +G  G  GE G++GA G  GP G  G PG+ G  G +G  G  G
Sbjct: 279 NKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADG 338

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+RG  G  G  G  G  GR G  G PG  G+ G  G  G  GK G PG  G
Sbjct: 339 VAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG 398

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G P
Sbjct: 399 EDGRPGPAGPPGARGQAGVMGFPGPKGAAGEP 430

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 64/152 (42%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ G +G  G  GA+GE G  GERG +G PG  GP G  G PG++G +G  G  G PG
Sbjct: 498 EQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPG 557

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG PG +G  G +G  G PG  G  G  G  G  G  G  G  G+ G  G  G  G  G
Sbjct: 558 SQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPG 617

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G TG RG  G  G  G PG  
Sbjct: 618 DKGEAGPSGPAGPTGARGAPGDRGEPGPPGPA 649

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 63/152 (41%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G KG+ GA G  G +G  G +G PG  G  G  G  GD G  GPKG  G PG
Sbjct: 537 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPG 596

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  GP G  G PG  G  G  G  G  G  G PG  G  G PG  G  G  G
Sbjct: 597 KDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG 656

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  G +G+ G  G  G  G P
Sbjct: 657 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 688

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 65/153 (42%), Positives = 70/153 (45%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              G  G  G  G  GA G  G+ GERG  G PG  G  G  G  G +G  G  G  G  
Sbjct: 545 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLT 604

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G PG  G  G KG+ G  G  G  G  G PG+ G  G PG  G  G PG DG PG  
Sbjct: 605 GPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 664

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  G+ G  GP G  G  G  G  G P
Sbjct: 665 GEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 697

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 66/152 (43%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  G  G  G  G  G +G  GE+G  G  GP GP+G  G  G  G KGD G PG
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPG 554

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G  G+ G  G  G  G  G  G  G DG PG++G+ G+ G  G PG  G
Sbjct: 555 APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAG 614

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G RG  G  G PG P
Sbjct: 615 APGDKGEAGPSGPAGPTGARGAPGDRGEPGPP 646

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 59/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G KG  G  G  G +G  G  G+ GP G  G  G
Sbjct: 162 NDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAG 221

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG +G+ G KG  G PG  G  G  G  G  G +G  G  G  G  G+ G PG  G
Sbjct: 222 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKG 281

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ GP G  G+ G  G  G P
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEP 313

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 55/153 (35%), Positives = 63/153 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G  G  G  G  G+ G  G  G PG  G  G  G +G +G  G  G
Sbjct: 39  FQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 98

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  G  G  G  G  G  G  G PGE G  G  G  G+ G  G+ G PG  G
Sbjct: 99  LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 158

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPA 263
             G +G  G  G  GP G  G  G  G  G   
Sbjct: 159 ARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKG 191

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 67/152 (44%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  GE G  G  G KG  G  GP G  G PG +G RG  G +G PG
Sbjct: 552 APGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPG 611

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PGD+G+ GP G  G  G  G  G  G PG PG  G  G  G DG PG  G PG  G
Sbjct: 612 PAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG 671

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  G  G  
Sbjct: 672 AKGDAGPPGPAGPAGPPGPIGNVGAPGPKGAR 703

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 58/152 (38%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  G  G KGE G  GE G  G  G  G PG +G PG  G  G +G+ G  G
Sbjct: 108 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAG 167

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G  G  G  G  G +G  G  G  G+ G  G  G  G  G  G  G
Sbjct: 168 AAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPG 227

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G  
Sbjct: 228 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPE 259

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 62/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  G  G  G  G  G  GA G  G  GP+G  G EG +G +G+ G PG
Sbjct: 156 PAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPG 215

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G PG PG  G  G  G  G PG  G  G+ G
Sbjct: 216 PAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPG 275

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G KG  GP G +G  G  G  G  
Sbjct: 276 APGNKGDTGAKGEPGPAGVQGPPGPAGEEGKR 307

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 5e-39
 Identities = 67/155 (43%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  GE GA G+MG +G  GE+G PG  GP G +G  G  G  GP G  G  G
Sbjct: 120 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTG 179

Query: 171 PQGIPGDEGKR---GPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
           P G PG  G +   GP+G  G  G  G+ G  G PG  G  G  G  G DG PG  G  G
Sbjct: 180 PPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 239

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             GI G  G  G +G +GP G  G  G  G  G P
Sbjct: 240 APGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEP 274

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 6e-39
 Identities = 62/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G +GE G  G  G  GERG  G+ G  G  G  G  G  G+RG  G  G  G
Sbjct: 300 PAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 359

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G  G  G  G  G  G DG  G PG  G  GR G  G PG  G  G  G
Sbjct: 360 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMG 419

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G  G RG  G  G  G  G  
Sbjct: 420 FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD 451

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 6e-39
 Identities = 66/152 (43%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G+QGP G  GE G +G  G  G  G  G PG  G PG +G PG +G  GPKG  G  G
Sbjct: 291 PAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG 350

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G +G  G  G  G  G  G  G  G PG PG DG  G  G  G  G+ G  G  G
Sbjct: 351 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPG 410

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  GK+G  GVPG P
Sbjct: 411 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 442

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 6e-39
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  GE G  G  G +G  G +GA G+ G  G  G+ G  G  G  G  G  G
Sbjct: 60  PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAG 119

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  G  G  G  G  GL G  G PG PG  G  G +G  G  G  G  G  G
Sbjct: 120 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTG 179

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G KG  GP G RG  G  GV G P
Sbjct: 180 PPGFPGAVGAKGEAGPEGARGSEGPQGVRGEP 211

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  156 bits (395), Expect = 6e-39
 Identities = 58/152 (38%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G++G  G  G  G+ G  GE+G PG  G PG  G+ G +G  G +G  G  G
Sbjct: 297 PPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG 356

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G PG+ G+ G  G  G  G  G  G  G  G+ G  G  G +G  G  G  G  G+ G
Sbjct: 357 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAG 416

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G  G RG  G  G  G  
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 448

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 6e-39
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G+ GAKG+ G  G  G  G PG +G  G  G  G  G  GP G  G+PG
Sbjct: 657 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPG 716

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G PG  G +G  G  GE G  G PG  G  G PG  G  G  G
Sbjct: 717 AAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPG 776

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G RG  G+ G  G  
Sbjct: 777 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGER 808

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 6e-39
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  GA G  G +G  G++G  G+ G  G +G PG  G  G  G  G  G
Sbjct: 768 PAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG 827

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G PG  G +G  G  G PG DG PG  G  G  G  G PG  G
Sbjct: 828 ASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 887

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G +G RG  G +G  G  G  
Sbjct: 888 APGAPGPVGPAGKSGDRGETGPAGPIGPVGPA 919

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 6e-39
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  G  G  G  G +G  G  GVVG PG +G  G  G  GP G+ G  G
Sbjct: 765 PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 824

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  GP G  G  G  G  GR+G PG  G  G  G  G  G  G+ G  G  G
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPG 884

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G+RG++G  G  G  
Sbjct: 885 APGAPGAPGPVGPAGKSGDRGETGPAGPIGPV 916

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 7e-39
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G +G  G  G  GE G  G  G  GAPG  GP G  G  G  G  G +G+ G+PG
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG 812

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ GK+GP G  G  G  G  G  GL G PG  G  G  G +G PG+DG PG  G
Sbjct: 813 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 872

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G  
Sbjct: 873 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDR 904

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 7e-39
 Identities = 60/152 (39%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G KG  GA G  G  G  G +G  G  GP G  G  G+ G+ G  G+ G  G
Sbjct: 225 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTG 284

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G +GP G  G  G+ G  G  G  G PG  G  G  G  G PG DG+ G  G
Sbjct: 285 AKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKG 344

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G  G  G  G  G+ G  G+PG  
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK 376

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 7e-39
 Identities = 60/152 (39%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G+ G  G  G  G +G  G++G PG  GP G  G PG +G+ G KG+ G  G
Sbjct: 612 PAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG 671

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  GP G  G  G +G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 672 AKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG 731

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G++G  GPRG  G +G  G  G P
Sbjct: 732 PPGPPGPAGKEGSKGPRGETGPAGRPGEVGPP 763

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 7e-39
 Identities = 60/152 (39%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +G  G +G  G  G  G  GA G  G PG  G PG +G  G  G  G PG
Sbjct: 189 AKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 248

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  G  G  G  G+ G  G PG  G+ G PG  G  GK G
Sbjct: 249 FPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRG 308

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  G RG  G  G  G  G  
Sbjct: 309 ARGEPGPSGLPGPPGERGGPGSRGFPGADGVA 340

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 7e-39
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  GA+G  G  G  G  G  G  GPPG  G  G +G+ GP+G  G  G
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEG 203

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           PQG+ G+ G  GP G  G  G  G DG+ G  G  G  GI G  G  G  G  G  G  G
Sbjct: 204 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSG 263

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +GE G  G +G+ G  G  G  G  
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQ 295

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 7e-39
 Identities = 62/152 (40%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G KG  G  G  G KG+ G  G  G  G PG  G PG  G RG  G+ G PG
Sbjct: 93  LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 152

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G PG  G  G  G PG  G  G  G  G  G  G  G+ G+ G
Sbjct: 153 APGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPG 212

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G NG PG  
Sbjct: 213 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 244

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (394), Expect = 8e-39
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL GP G  GE G  GE GV G+ G  G  G  G  G  G  G EG  GP G  G  G
Sbjct: 480 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANG 539

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G +G  G  G  G  G  GL G  G  G  GL G  G  G  G  G DG PGKDG
Sbjct: 540 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDG 599

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G  G++G++G +G  G  
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPT 631

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 8e-39
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G +GE G  G  G  GPQG+ G+ G  GP G  G  G
Sbjct: 165 AAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAG 224

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G  G  G  G  G  G  G  G  G  G PG  G  G PG  G  G  G
Sbjct: 225 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTG 284

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G  GK G  G PG  
Sbjct: 285 AKGEPGPAGVQGPPGPAGEEGKRGARGEPGPS 316

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 8e-39
 Identities = 61/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G +G  G +G +G+ G  G  G  G  G  G  GP G+ G PG
Sbjct: 675 DAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG 734

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G EG +GP+G+ G  GR G  G  G PG  G  G PG +G  G PG  G  G  G
Sbjct: 735 PPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAG 794

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G++G  G  G  G SG  G  G  
Sbjct: 795 QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 826

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 9e-39
 Identities = 65/152 (42%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  GA+G  G +GE G  G  G  GPPG  G PG +G+ G  G  G  G
Sbjct: 618 DKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 677

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G++G PG  G  G  G PG  G  G  GR G  G  G  G PG  G
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPG 737

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G +G TGP G  G+ G  G PG  
Sbjct: 738 PAGKEGSKGPRGETGPAGRPGEVGPPGPPGPA 769

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 9e-39
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +GE G  GE GV+G  G  G  G  G PG  G  GD G  G  G  G PG
Sbjct: 504 DLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPG 563

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG+PG+ G  G  G  G  G  G  G DG PG+ G+ G+ G  G  G  G  G  G+ G
Sbjct: 564 LQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAG 623

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G RG  G  G  G  G P
Sbjct: 624 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPP 655

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 1e-38
 Identities = 56/152 (36%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  GA G  GP G +G  G +G RG  G  G  G
Sbjct: 159 ARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAG 218

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G  G  G  G+ G  G PG  G  G  G +G  G  G  G PG  G
Sbjct: 219 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPG 278

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  G +G  G +G  G  G  
Sbjct: 279 NKGDTGAKGEPGPAGVQGPPGPAGEEGKRGAR 310

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 1e-38
 Identities = 59/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G +GE G  G  G  GP G  G  G  GP G++G PG
Sbjct: 639 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 698

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G  G  G  G  GR+G  G  G  G PG  G  G+ G  G  G+ G  G+ G
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPG 758

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G  G PG  
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQ 790

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 1e-38
 Identities = 63/152 (41%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  GA G  G  G  G  G  G  GPPGP G  G EG +GP+G+ G  G
Sbjct: 696 APGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAG 755

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G+ G PG  G  G  G PG  G+ G  G  G+ G  G+ G PG  G
Sbjct: 756 RPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG 815

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G +G RG  G  G  G+ G P
Sbjct: 816 PSGEPGKQGPSGASGERGPPGPMGPPGLAGPP 847

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 1e-38
 Identities = 65/152 (42%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  G  G  G  GAPG  G  G  G PG  G  G  G +G PG
Sbjct: 666 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPG 725

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G  G  G  G  G PGE G  G PG  G  G PG DG  G  G
Sbjct: 726 PSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPG 785

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G++G+ G  G RG+ G  G+PG  
Sbjct: 786 TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 817

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  155 bits (393), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  GQ G  G  GE G  G  G  GA G  G  G  G PG  G  GP G  G  G
Sbjct: 129 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVG 188

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G EG RG +G  G  G  G  G  G  G  G  G  G+ G  G  G  G+ G  G
Sbjct: 189 AKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 248

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +G +G +G  G +G SG  G PG  
Sbjct: 249 FPGARGPSGPEGPSGAPGPKGNSGEPGAPGNK 280

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (392), Expect = 1e-38
 Identities = 63/152 (41%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ G  G  G  G KG+ G  G +G  GAPG  G  G  G  G  G  G  GD G  G
Sbjct: 564 LQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAG 623

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG  GD G PG  G  G  G PG  G  G  G  G  G  G  G PG  G
Sbjct: 624 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 683

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP+G RG +G  G  G P
Sbjct: 684 PAGPPGPIGNVGAPGPKGARGSAGPPGATGFP 715

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (392), Expect = 1e-38
 Identities = 58/152 (38%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +GP G +G  G  G  G+ G +G +G  G+ G  G  G  G +G+ G  G+ G PG
Sbjct: 78  RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG 137

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+RG  G  G  G  G DG  G  G PG  G  G  G  G  G  G  G +G
Sbjct: 138 QMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEG 197

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G +G  GP G  G +G  G PG  
Sbjct: 198 ARGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD 229

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (392), Expect = 1e-38
 Identities = 62/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  GE GA G  G KG+RG+ G  G  G PG  G+ G  G  GP G  G PG
Sbjct: 558 SQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPG 617

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  GP G  G PG  G  G  G  G  G  G  G+ G  G PG  G  G  G
Sbjct: 618 DKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 677

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G  G  G P
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPP 709

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (392), Expect = 1e-38
 Identities = 58/152 (38%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  GP G  G  G  G  G  G  G  G  G  G  G +G  G  G  G  G  G PG
Sbjct: 834 PPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 893

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG  G  G  G +G  G  G  G  G  G  G  G +G  G  G  G  G
Sbjct: 894 PVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSG 953

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  GP G  G +G  G PG+ 
Sbjct: 954 LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 985

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (392), Expect = 1e-38
 Identities = 63/152 (41%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GPIG  G  G KG  G  G  G  G PG  G  GP G  G+ G  GP G  G  G
Sbjct: 684 PAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 743

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G+ G  G  G++G PG  G  G  G PG  G  G PG  G  GI G+ G+ G  G
Sbjct: 744 SKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPG 803

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G +G  G +G SG +G  G P
Sbjct: 804 QRGERGFPGLPGPSGEPGKQGPSGASGERGPP 835

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 1e-38
 Identities = 58/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  G +G  G +G  G+ G +G++G  G  G  G  G  G  G  GP G  G  G
Sbjct: 555 APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAG 614

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  GP G  G  G  G  G  G PG  G  G PG +G  G  G+ G  G  G
Sbjct: 615 APGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKG 674

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP GN G  G  G  G+ 
Sbjct: 675 DAGPPGPAGPAGPPGPIGNVGAPGPKGARGSA 706

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 1e-38
 Identities = 65/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  G  G  G+RGE G PG  G  GP G  G  G +G  GD G  G
Sbjct: 615 APGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKG 674

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G +G  G  G  G  G  G PG  G PG  G  G PG  G  G  G
Sbjct: 675 DAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG 734

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G KG  G  G  G+ G  G PG P
Sbjct: 735 PPGPAGKEGSKGPRGETGPAGRPGEVGPPGPP 766

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 1e-38
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G  G  G  G  G+ GA G  G  G +G  G  G  GP G  G  G
Sbjct: 633 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 692

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G RG  G  G  G  G  GR G PG  G  G PG  G  G  G  G  G+ G
Sbjct: 693 NVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETG 752

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G +G  G +G  G P
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAP 784

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 1e-38
 Identities = 57/152 (37%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  G  G  G PG  G  G+ G  G +G  G  G
Sbjct: 147 ERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQG 206

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  G  G  G PG  G  G  G  G PG+ G PG  G  G  G +G  G  G
Sbjct: 207 VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPG 266

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  G  G +G+ G  GV G P
Sbjct: 267 PKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPP 298

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  G  G  G  G  G  G VG PGP+G  G  G  G  G  G  G
Sbjct: 660 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAG 719

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G  G  G+ G  G  G  G  G  G  G  G  G  G+ G PG DG
Sbjct: 720 RVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADG 779

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  GT G +G+ G RG  G  G  G  G P
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 811

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 2e-38
 Identities = 56/144 (38%), Positives = 65/144 (45%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  GPIG  G  GA+G  G +G RG+KG  G  G  G +G  G  G +GP G  G PG
Sbjct: 906  ETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPG 965

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             QG  G  G  GP+G  G  G  G DG +GLPG  G  G  GR G  G  G  G PG  G
Sbjct: 966  EQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPG 1025

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSG 254
             PG      +         +    
Sbjct: 1026 PPGPPSGGYDLSFLPQPPQQKAHD 1049

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 2e-38
 Identities = 65/152 (42%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G +G  G  G  G +GE+G  G+PG  G PGP G PG+ GK G +G  G  G
Sbjct: 447 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG 506

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+RG  G+ G  G  G  G  G  G PG DG  G  G  G PG  G PG  G
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 566

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G RG+ G  G +G PG  
Sbjct: 567 MPGERGAAGLPGPKGDRGDAGPKGADGAPGKD 598

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (391), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G+ GE G  G++G  G  G +G  G  G  G +G PG  G RG  G  G  G
Sbjct: 486 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDG 545

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G +G  G  G  G  G  GLPG  G  G  G  G DG PGKDG+ G  G
Sbjct: 546 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTG 605

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G  G  G P
Sbjct: 606 PIGPPGPAGAPGDKGEAGPSGPAGPTGARGAP 637

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 62/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  G  G  G+ G KG PG  G  G  G PG  G  GP G +G  G
Sbjct: 636 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 695

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G+PG  G  G  G  G  G  G PG  G +G  G  G  G  G
Sbjct: 696 APGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAG 755

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G +G  G  G  G PGTP
Sbjct: 756 RPGEVGPPGPPGPAGEKGAPGADGPAGAPGTP 787

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G+ G  G  G  G +GE G  G  G  G PG  GP G  G  G  G  GP G  G PG
Sbjct: 789 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 848

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G PG  G  G  G  G PG  G PG  G  G  GK G  G+ G
Sbjct: 849 ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 908

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G +G  G  G  G  
Sbjct: 909 PAGPIGPVGPAGARGPAGPQGPRGDKGETGEE 940

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G +G +G  G +G  G  G  G +G  G  G  GP G  G  G  G  G +G  G
Sbjct: 132 ENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKG 191

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP+G  G PG  G  G  G  G PG DG PG  G +G PG  G PG  G
Sbjct: 192 EAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPG 251

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  GP+GN G+ G  G  G  
Sbjct: 252 ARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDT 283

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  G  G +G  G +G  G  G  G  G PG  G  G+ GK+GP G  G  G
Sbjct: 774 APGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 833

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G+ G  G  G +G  G  G PG  G  G  G  G PG  G PG  G
Sbjct: 834 PPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 893

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G++G TGP G  G  G  G  G  
Sbjct: 894 PVGPAGKSGDRGETGPAGPIGPVGPAGARGPA 925

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 66/152 (43%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G +G  G  GA+G  G  G  G  GA G VGPPGP G  G  G  GP G  G  G
Sbjct: 687 PPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKG 746

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G+ G  G  G PG  G  G  G  G  G  G PG  G+ G  G  GLPG+ G
Sbjct: 747 PRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG 806

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G  G SG  G PG  
Sbjct: 807 ERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 838

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 63/152 (41%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  G  G  G  G  G  G  G  GPPGP G  G +G RG  G  G PG
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPG 758

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G KG  G  G  G  G  G  G  G  G+ G  G  G  G  GLPG  G
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG 818

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +G  G  GP G  G  G+ G PG  
Sbjct: 819 EPGKQGPSGASGERGPPGPMGPPGLAGPPGES 850

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 63/152 (41%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G +G KGE G +GA G  GP G +G PG  G  G  G  G PG
Sbjct: 168 AAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPG 227

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G  G  G  G PG  G  G  G  G  G  G  G +G  G PG  G  G  G
Sbjct: 228 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKG 287

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G RG  G  G  G P
Sbjct: 288 EPGPAGVQGPPGPAGEEGKRGARGEPGPSGLP 319

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 58/152 (38%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G +G  G  G  G  G  G+KG  G  GP GP G  G  G RG  G  G  G
Sbjct: 591 ADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAG 650

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G+ G KG+ G  G  G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 651 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPG 710

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP GN G  G  G  G  
Sbjct: 711 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 742

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 58/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G KGE G  G  G  G  GP+G+PG+ G+ G  G  G  G
Sbjct: 102 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 161

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G PG  G  G  G  G  G  G  G  G+ G PG  G  G  G
Sbjct: 162 NDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAG 221

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G+ G  G  G  G +G  G PG  
Sbjct: 222 PAGNPGADGQPGAKGANGAPGIAGAPGFPGAR 253

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G++G  G++G  GE+GA G+ GP G +G  G +G  G  G  G  G
Sbjct: 543 NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRG 602

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  GD G  G  G  G  G  G PG  G PG  G  G  G  G  G+ G
Sbjct: 603 LTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG 662

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G KG  GP G  G +G  G  G  
Sbjct: 663 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV 694

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  154 bits (390), Expect = 2e-38
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  GE G +G  G +G  G  G+PG  G  G  G  G  G  G  G  G  G
Sbjct: 837 PMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG 896

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  GD G+ GP G +G  G  G  G  G  G  G  G  G  G  GI G  G  G  G
Sbjct: 897 PAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQG 956

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G+ GE+G +G  G  G  G  G  G+P
Sbjct: 957 PPGPPGSPGEQGPSGASGPAGPRGPPGSAGSP 988

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 2e-38
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G+ G KG  G  GP G  G  G  G  GP G+ G PG
Sbjct: 717 AAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPG 776

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP+G  G  G +GL G+ G  G PGL G  G  G  G  G  G  G  G
Sbjct: 777 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 836

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G +G  G  G  G  G  G+P
Sbjct: 837 PMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 868

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 2e-38
 Identities = 63/152 (41%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  GE G  G RG  GA GV GP GP G  G  G  GPKG  G  G
Sbjct: 306 KRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAG 365

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G  G  G PG  G  G  G  GE G  G  G  G  G  G  G PG  G
Sbjct: 366 RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKG 425

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G+ GP G  G +G +G  G  
Sbjct: 426 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ 457

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 58/152 (38%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G  G  G  G  G  G  GP G  G  G  G  G  G  G
Sbjct: 669 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSG 728

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G +G  G  G  G  GR G  G PG  G  G  G  G  G  G PG  G
Sbjct: 729 NAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPG 788

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G RG RG  G+ G  G P
Sbjct: 789 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP 820

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 67/155 (43%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKR---GPKGDMG 167
             G  GP G +G  GA G  G KG+ G  GAPG  G PG QG+PG+ G     GPKGD G
Sbjct: 525 VEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG 584

Query: 168 YPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
             GP+G  G  GK G +G  G  G  G  G  G  GE G  G  G  G  G PG  G PG
Sbjct: 585 DAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPG 644

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G  G +G  G  G P
Sbjct: 645 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 679

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG QG  G  G  G  G  G +G  G  GA G  GP GP+G PG  G+ G  G MG  G
Sbjct: 84  PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 143

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  G  G  G  G  G  G PG  G  G  G +G  G +G
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEG 203

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G +G PG  
Sbjct: 204 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 235

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 63/153 (41%), Positives = 71/153 (46%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              G  G  G  G++GA G  G +GERG  G  GV GPPGP G  G  G  G  G  G  
Sbjct: 491 GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDA 550

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G PG +G  G +G  G  G  GL G  G  G+ G  G  G  G DG+ G  G  G  
Sbjct: 551 GAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPP 610

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G  GE G +GP G  G  G  G  G P
Sbjct: 611 GPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEP 643

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  GA G  G  G +G  G  G  G PGP+G  GD G +G  G  G  G
Sbjct: 540 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDG 599

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+ G  G  GP G  G  G  G  G  G  G  G  G  G  G  G  G  G PG DG
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 659

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G+ G  G  G  G +G  G PG  
Sbjct: 660 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 691

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 61/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G+ G  G  G  G +G  G +G PG  G  GP+G  G+ G  GP G  G PG
Sbjct: 303 EEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG 362

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  G KG  G PG  G DG+ G PG  G DG PG  G  G  G+ G+ G  G
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPG 422

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G  G  G  G  G  G  G  
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 454

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  G PG  G  G +G  G+ G  G  G++G PG
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPG 764

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G++G  G  G  G PG  G  G  G  G  GL G  G  G  G+PG  G PGK G
Sbjct: 765 PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 824

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  GP G  G  G +G  G P
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGREGAP 856

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (389), Expect = 3e-38
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PGLQG  G++G  G  G  G +G+ G KGA G  G  G +G+ G  G  GP G  G  G
Sbjct: 561 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKG 620

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G  G  G  G  G  G  G PG DG PG  G  G  G  G  G  G
Sbjct: 621 EAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG 680

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G  G  G PG  
Sbjct: 681 PAGPAGPPGPIGNVGAPGPKGARGSAGPPGAT 712

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 3e-38
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G +G+ G KG  G  G  GV G  GP G PG  G  G KG+ G  G
Sbjct: 567 MPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSG 626

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G +G+ G PG  G  G  G  G+PG  G PG  G  G  G  G  G  G
Sbjct: 627 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG 686

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G RG+ G  G  G PG  
Sbjct: 687 PPGPIGNVGAPGPKGARGSAGPPGATGFPGAA 718

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 3e-38
 Identities = 61/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G KG  G+ G  G  G  G  G  G  GP G  G PG  G  G +G  G  G
Sbjct: 690 PIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRG 749

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ GP G  G  G  G  G DG  G PG  G  G  G  G+ G  G  G+ G
Sbjct: 750 ETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERG 809

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +GE G  GP G  G+ G  G  G P
Sbjct: 810 FPGLPGPSGEPGKQGPSGASGERGPPGPMGPP 841

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G++G  G  G +G  G+ GE GA G  GP GP G  G++G  G  G  G PG
Sbjct: 426 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPG 485

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG+ GK G +G  G  G  G  G  G  G PG  G+ G  G  G  G +G PG DG
Sbjct: 486 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDG 545

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G  G  G  G P
Sbjct: 546 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLP 577

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 65/152 (42%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  G  GA G+ G KGE G+ GA G  GPPGP G  G  G  G  G  G  G
Sbjct: 642 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKG 701

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G  G  G  G  G  G  G PG PG  G  G  G  G  G  G PG+ G
Sbjct: 702 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVG 761

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GEKG  G  G  G  G  G  G  
Sbjct: 762 PPGPPGPAGEKGAPGADGPAGAPGTPGPQGIA 793

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 60/152 (39%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G KG+ G  G  G  G  G  G  G  GP G +G  G  G  G  G  G  G
Sbjct: 663 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVG 722

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  GP G  G  G  G  G  G  G PG  G PG  G  G  G  G  G  G
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAG 782

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PGT G  G  G  G  G  G+ G  G PG P
Sbjct: 783 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLP 814

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 58/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G++G  G  G  G +G  G  G  G  G  G  G PG +G  G +G  G  G
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERG 572

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG +G RG  G  G  G  G DG  GL G  G  G  G  G  G  G  G  G  G
Sbjct: 573 AAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTG 632

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  GP G  G  G +G PG  
Sbjct: 633 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 664

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 60/152 (39%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  G KG  G  G  G KG  G  GP G  G PG+ G  G  G  G PG
Sbjct: 87  PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPG 146

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  G +G+ G  G  G  G  G  G PG  G  G  G  G  G  G  G  G
Sbjct: 147 ERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQG 206

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  GP GN G  G  G  G  
Sbjct: 207 VRGEPGPPGPAGAAGPAGNPGADGQPGAKGAN 238

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 63/152 (41%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG++G  G  G  GAKG+ G  G +GE G+PG  G PG  G  G  G+RG  G  G  G
Sbjct: 99  LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 158

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  GP G  G  G  G  G  G  GE G +G  G  G  G+ G+ G PG  G
Sbjct: 159 ARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAG 218

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G  G  GI G PG P
Sbjct: 219 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 250

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 58/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +GP G  G  G  G  G  G  G  GA G  G  G  G  GD G+ GP G  G PG
Sbjct: 828 ASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 887

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G  GD G  G  G  G  G  G  G  G  G  G  G  G++G  G  G
Sbjct: 888 APGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKG 947

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  G  G +G SG +G  G  
Sbjct: 948 HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 979

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 59/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G +G  G+ G +G  G+ G  GE G  G  G  G +G PG  G  G  G  G  G
Sbjct: 792 IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESG 851

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG EG  G  G  G  G  G  G  G PG PG  G PG  G  G  G  G  G  G
Sbjct: 852 REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 911

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP+G RG  G  G  G  
Sbjct: 912 PIGPVGPAGARGPAGPQGPRGDKGETGEEGDR 943

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  153 bits (388), Expect = 4e-38
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G  GE G  GE+G  G  G  GP G +G  G  G+RG +G  G  G
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAG 533

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G  G KGD G PG  G  G  GL G PG  G  G  G  G  G  G  G DG
Sbjct: 534 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 593

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G  G  GP G  G  G  G  G  
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPS 625

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 4e-38
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ GE G  G  G +G  G  G PG+ G  G  G+ G +G  GP G  G PG
Sbjct: 69  DDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG 128

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ GP+G  G  GR G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 129 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVG 188

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP+G RG+ G  G  G  
Sbjct: 189 AKGEAGPEGARGSEGPQGVRGEPGPPGPAGAA 220

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 66/152 (43%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  GE G  G  G  G RG+ G  G  GP G  G PG  G+RG  G  G  G
Sbjct: 387 PDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 446

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G +GP G  G  G  G  G  G PG  GL G  G  G  G PG+ G+PG  G
Sbjct: 447 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG 506

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  GE+G  G RG  G  G  G  G  
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGAN 538

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 62/152 (40%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G KG  G  G  G  GE G  G PG  G  G  G  G  G  G  G  G  G
Sbjct: 735 PPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAG 794

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+ G  G+RG +G  G PG  G  G+ G  G  G  G PG  G  G+ G  G  G++G
Sbjct: 795 QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREG 854

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G+ G  G  G +G+RG++G  G PG P
Sbjct: 855 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 886

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 62/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G +G  G  G  G KG  G  G PG QG PG +G  G +G  G PG
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 578

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  GD G +G  G  G  G  GL G  G PG  G  G  G  G  G  G  G  G  G
Sbjct: 579 PKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPG 638

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G+ G  G PG  
Sbjct: 639 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDA 670

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G +G  G  G  G  G  G  G  G  GP+G  G  G+ G  G  G PG
Sbjct: 708 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPG 767

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G PG  G+ G+ G+ G PG  G  G  G+ G  G+ G  G  G
Sbjct: 768 PAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG 827

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G+SG  G PG  
Sbjct: 828 ASGERGPPGPMGPPGLAGPPGESGREGAPGAE 859

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G++G  G+ G  G+ G  G  G  G  G  G  G  G  G  G +G+ G+PG
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 521

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+ G  G  GP+G  G PG  G  G  G PG PG  G PG  GM G  G  GLPG  G
Sbjct: 522 ERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 581

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G RG +G  G PG  
Sbjct: 582 DRGDAGPKGADGAPGKDGVRGLTGPIGPPGPA 613

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G++G  G +G  G+ G  G  G  G  G  G  G  GD G  GPKG+ G PG
Sbjct: 72  EAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG 131

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G RG  G+ G PG  G  G  G  G  G  G PG  G  G PG  G  G  G
Sbjct: 132 ENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKG 191

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G RG  G  G  G  G  
Sbjct: 192 EAGPEGARGSEGPQGVRGEPGPPGPAGAAGPA 223

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (387), Expect = 5e-38
 Identities = 64/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P GL GP G++G  G++G  G  G  G KG  G  G PGP G  G  G+ G  G+ G PG
Sbjct: 315 PSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPG 374

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+ G  G  GP G  G PG  G DGR G  G PG  G  G  G  G  G  G PGK G
Sbjct: 375 AKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAG 434

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G  
Sbjct: 435 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPA 466

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (386), Expect = 6e-38
 Identities = 65/153 (42%), Positives = 77/153 (50%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
             PG  GP G  GE G  GE G+ G +G  G+PG  GP G  G PG  G+ G  G  G P
Sbjct: 350 GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPP 409

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G +G  G  G  GPKG  G PG+ G  G  G PG  G  G  G  G  G PG  G  G+ 
Sbjct: 410 GARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 469

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G+ G +G+ GP G  G++G  G  G P
Sbjct: 470 GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 502

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (386), Expect = 6e-38
 Identities = 61/152 (40%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  G  G  G  G+ G KG  G  GP GP G PG  G  G  G  G  G
Sbjct: 645 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARG 704

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G  G +G PG  G  G  G PG  G +G  G  G  G  G+ G  G  G
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPG 764

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  G  G  G+ G  
Sbjct: 765 PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQR 796

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (386), Expect = 6e-38
 Identities = 63/152 (41%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL GPIG  G  GA G+ G  G  G  G  G  G PG +G PG  G  G  G  G  G
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 659

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G KGD G PG  G  G  G  G  G  G  G  G  G PG  G PG  G
Sbjct: 660 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAG 719

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  GP G  GK G  G  G  
Sbjct: 720 RVGPPGPSGNAGPPGPPGPAGKEGSKGPRGET 751

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (386), Expect = 6e-38
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G  G  G  G  G  G  G  GP G  G  G  G+ GP G  G  G
Sbjct: 711 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAG 770

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG +G  G  G  G  G  G  G  GLPG+ G  G PG  G  G PGK G  G  G
Sbjct: 771 EKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASG 830

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ GP G  G+ G  G  G+P
Sbjct: 831 ERGPPGPMGPPGLAGPPGESGREGAPGAEGSP 862

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (386), Expect = 7e-38
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G+ G+ G +G  G  G  G  GA G  G PG +G+ G  G  GP+G  G PG
Sbjct: 483 LPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPG 542

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  GD G  G  G  G PG  G+ G  G  G PG  G  G  G  G  G  G  G  G
Sbjct: 543 NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRG 602

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G +G  G SG  G  G  
Sbjct: 603 LTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR 634

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (385), Expect = 7e-38
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ GP G  GE G+ G  G KG  GE G PG  G PG +G+ G  G  GP G  G PG
Sbjct: 336 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG 395

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G  G +G  G  G  GEPG  G  G  G  G  G  G  G+ G
Sbjct: 396 PAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG 455

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G  G  G  G+PG  
Sbjct: 456 AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (385), Expect = 8e-38
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G++G  G  G  G  G RGE+G PG  G  GP G  G  G  G  G+ G  G
Sbjct: 489 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G +G  G  G PG  G  G  G  G+ G  G  G +G  G  G  GL G  G
Sbjct: 549 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIG 608

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G+KG  GP G  G +G  G PG  
Sbjct: 609 PPGPAGAPGDKGEAGPSGPAGPTGARGAPGDR 640

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (385), Expect = 8e-38
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G+ G  G  GE G  G  G  GA G  G  G  G  G  G+ G  G+ G PG
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  GK G  G  G PG  G  G  G  G  G  G  G  G  G PG+ G PG+ G
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 500

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G RG  G+ G+ G PG  
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPA 532

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (385), Expect = 8e-38
 Identities = 57/152 (37%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G +G  G  G  G  G  G KG PG  G  G  G  G  G  G +G  G PG
Sbjct: 96  TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPG 155

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G++G  G  G  G  G  G  G  G  G  G  G  G  G +G  G  G PG  G
Sbjct: 156 PAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPG 215

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G +G  G+ G P
Sbjct: 216 PAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 247

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (385), Expect = 9e-38
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G++G  G +G  G  G  G +GA G  G  G +G  G  G  G +G  G  G
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 566

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GPKGD G  G  G DG  G  G  GL G  G  G  G PG  G  G  G
Sbjct: 567 MPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSG 626

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G  G PG  
Sbjct: 627 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGAD 658

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  152 bits (385), Expect = 9e-38
 Identities = 59/152 (38%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  GA G+ G  G  G  G  G  G  G  G  G+ G  G KGD G PG
Sbjct: 621 EAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG 680

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  G PG  G
Sbjct: 681 PAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG 740

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  GE G  G  G  G  G  G  G  
Sbjct: 741 KEGSKGPRGETGPAGRPGEVGPPGPPGPAGEK 772

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (384), Expect = 1e-37
 Identities = 57/152 (37%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  GA+G  G  G  G KG  G  G  G +G  G  G +G  G  G  G
Sbjct: 75  KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG 134

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G  G PG  G  G DG  G  G  G  G  G  G PG  G  G+ G
Sbjct: 135 APGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAG 194

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G +G+ G  G  G +G  G  G P
Sbjct: 195 PEGARGSEGPQGVRGEPGPPGPAGAAGPAGNP 226

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (384), Expect = 1e-37
 Identities = 62/152 (40%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  GAKG+ G  G  G +GAPG+ G PG +G  G  G +G +GD G  G
Sbjct: 531 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKG 590

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G RG  G +G PG  G  G  G  G  G  G  G  G  G  G+ G PG  G
Sbjct: 591 ADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAG 650

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G+ G  G  G+ G  G  G PG  
Sbjct: 651 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 682

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (384), Expect = 1e-37
 Identities = 53/150 (35%), Positives = 61/150 (40%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  GP G  G +G  G  G  G +G +G  G  G  G +GI G  G  G +G  G PG
Sbjct: 903  DRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPG 962

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
              G  G  G  GP G  G PG  G  G+DGL G PG  G PG  G  G  G  G PG  G
Sbjct: 963  SPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPG 1022

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
             PG  G               +   +    
Sbjct: 1023 PPGPPGPPSGGYDLSFLPQPPQQKAHDKGR 1052

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (384), Expect = 1e-37
 Identities = 61/152 (40%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G+ G +G  G  G  G  GAPG  G  GP G  G  G RG  GD G PG
Sbjct: 585 DAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPG 644

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  G  G  G
Sbjct: 645 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARG 704

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G SG  G PG P
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 736

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (383), Expect = 1e-37
 Identities = 64/153 (41%), Positives = 76/153 (49%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  G  GQ G +G  G  G  GE G+ G  GV GPPG  G  G +G+ G +G  G  
Sbjct: 404 GPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 463

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G  G++G  G  G  G PG  G  G  G PGE G+ G  G  G  G  G+ G PG+ 
Sbjct: 464 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGER 523

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G+ G  G  G +G  G  GN G  G  G PG P
Sbjct: 524 GVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 556

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (383), Expect = 1e-37
 Identities = 58/153 (37%), Positives = 63/153 (41%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  G  G  G  G  G  G +G  G +G  G  GPPGP G  G  G  G  G  G  
Sbjct: 176 GPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 235

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G PG  G  G  G  G  G  G  G  G  G  G  G PG  G  G  G+ G  G  
Sbjct: 236 GANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQ 295

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  G++G  G  G  G  G  G  G P
Sbjct: 296 GPPGPAGEEGKRGARGEPGPSGLPGPPGERGGP 328

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (383), Expect = 1e-37
 Identities = 50/150 (33%), Positives = 58/150 (38%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G +G  G  G IG  G  G +G  G +G  G  G  G +G  G +G RG  G  G PG
Sbjct: 900  KSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPG 959

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            P G PG++G  G  G  G  G  G  G  G  G  GL G  G  G  G  G  G  G  G
Sbjct: 960  PPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPG 1019

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
             PG  G  G            +        
Sbjct: 1020 PPGPPGPPGPPSGGYDLSFLPQPPQQKAHD 1049

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (383), Expect = 1e-37
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G +G  G  G  G  G  G  GA G  G PG  G  G  G +G  G+ G  G
Sbjct: 516 ERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG 575

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  GD G  GPKG  G PG+ G+ G  G  G PG  G PG  G  G  G  G  G  G
Sbjct: 576 LPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARG 635

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G  G  G P
Sbjct: 636 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEP 667

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (383), Expect = 2e-37
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  GA G  G  G RG  G  G  GP G  G  G+ G  GP G  G  G
Sbjct: 576 LPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARG 635

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  GP G  G PG  G  G  G PG+ G  G  G  G  G  G  G  G  G
Sbjct: 636 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 695

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G +G  G PG  
Sbjct: 696 APGPKGARGSAGPPGATGFPGAAGRVGPPGPS 727

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 62/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G+ G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  G  G
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 452

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G+ G  G  G  G  GLPG  G  G  G+ G  G+PG  G PG  G
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 512

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G+ GP G  G  G NG PG  
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGND 544

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 59/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  G  G +G  G+ G +G+ G  G  G PG  G  G  G+ GP+G  G  G
Sbjct: 90  ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERG 149

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G RG  G  G  G  G  G  G PG PG  G  G  G +G  G +G  G  G
Sbjct: 150 RPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRG 209

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G+ G  G  G P
Sbjct: 210 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 241

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 58/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  GE G +G  G  G +G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 456 AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARG 515

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG+ G  GP G  G  G  G  G DG  G+ G  G PG  G  G+ G  G  G  G
Sbjct: 516 ERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG 575

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G+ G  G  G  GK G+ G+ G  
Sbjct: 576 LPGPKGDRGDAGPKGADGAPGKDGVRGLTGPI 607

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 62/153 (40%), Positives = 68/153 (44%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              GL G  G  G  G+ G  G  G  G  G  G  GP GP G  G  G  G  G  G  
Sbjct: 368 GEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAA 427

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G  G+ G  GP G +G  G+ G  G  G PG  G  G  G  G  G PG  GLPG  
Sbjct: 428 GEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  GE+G+ G  G  G SG  G  G P
Sbjct: 488 GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFP 520

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G KG  G  G  GE G PG  G  G  G PG +GK GP G  G  G
Sbjct: 342 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDG 401

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G RG  G MG+PG  G  G  G  GE G+ G PG  G  G  G+ G  G  G
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPG 461

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  G  G +G  G  G PG  
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 493

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  G  G  G  G+ G +G  G+ GAPG  G  G +G PG+ G  GP G  G  G
Sbjct: 477 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRG 536

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG++G +G  G  G PG  G  G  G+PGE G  G+PG  G  G  G  G  G  G
Sbjct: 537 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPG 596

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  G  G  
Sbjct: 597 KDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPA 628

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (381), Expect = 2e-37
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G KG  G +G  G  G +G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 392

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G++G+ GP G  G  G+ G+ G  G  G  G  G  G  G+ G PG  G  GKDG
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 452

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RG +G +G  G  G P
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 484

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (381), Expect = 2e-37
 Identities = 64/152 (42%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G +G  G  GA GE G  GERG  G PG VGP G  G  G +G  GP G  G  G
Sbjct: 411 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERG 470

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG  G  G +G  G  G PG  G  G  G+PG+ G  G  G  G  G PG+ G+ G  G
Sbjct: 471 EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPG 530

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G NG  G  G +G+ G  G  G  G P
Sbjct: 531 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 562

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (381), Expect = 2e-37
 Identities = 65/152 (42%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG +G  G +G  GA G  G KG  GE+G+PG  GP G  G  G  G+ G  G  G  G
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 380

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +GK GP G  G  GR G  G  G  G+ G+ G PG  G  G PGK G  G  G
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G+ G  G +G  G +G  G  G  
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ 472

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (381), Expect = 2e-37
 Identities = 62/155 (40%), Positives = 68/155 (43%)

Query: 108 EYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMG 167
           +  P G  G  G+ G  G  G +G  G  G  G  G  GP GP G  G  G  G +G+ G
Sbjct: 585 DAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPG 644

Query: 168 YPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
            PGP G  G  G  G  G  G PG  G  G  G PG  G  G PG  G  G PG  G  G
Sbjct: 645 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARG 704

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G PG  G  G  G  GP G  G +G  G PG  
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA 739

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (381), Expect = 3e-37
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G +G  G +G  G  G  G  GP G +G PG  G +G  G+ G PG
Sbjct: 309 ARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 368

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG +G  G  G  G  G+ G  G  G  G PG  G PG  G  G+ G  G  G  G
Sbjct: 369 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAG 428

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  GK G  G  G P
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP 460

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (381), Expect = 3e-37
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  GE G +G  G  G  G+ GP GP G  G  G++G  GD+G PG
Sbjct: 450 KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG 509

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  G +G  G PG  G  G +G PG  G  G  G  G  G  G  GL G  G
Sbjct: 510 PSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPG 569

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G KG  G  G +G  G  G  G  
Sbjct: 570 ERGAAGLPGPKGDRGDAGPKGADGAPGKDGVR 601

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (380), Expect = 3e-37
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G+ G PG  G  G  G  G  G RG  G MG+PG
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPG 422

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G+ GK G +G  G PG +G  G+DG  G  G  G  G  G  G  G  G PG  G
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG 482

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  GE G  G +G  G  G  G  G  
Sbjct: 483 LPGPAGPPGEAGKPGEQGVPGDLGAPGPSGAR 514

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (380), Expect = 3e-37
 Identities = 62/152 (40%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G KGE G  G  G  GA G  G  G  G PG  G  GP G  G PG
Sbjct: 603 LTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG 662

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PGD G +G  G  G  G  G  G  G  G PG  G  G  G  G  G  G  G+ G
Sbjct: 663 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVG 722

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G  G  GP G  G  G  G  G  
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPA 754

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (380), Expect = 3e-37
 Identities = 58/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  GV G +G  G  G  GP GP+G PG+ G+ G  G  G  G
Sbjct: 318 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKG 377

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G  G  G  G  G  G  G PG  G  G+ G  G  G  G+ G  G+ G
Sbjct: 378 LTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERG 437

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G  G +G  G  G  G  
Sbjct: 438 VPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 469

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (380), Expect = 3e-37
 Identities = 56/152 (36%), Positives = 61/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G+ G  G  G  G  G  G  G  G  G  G +G  G  G
Sbjct: 582 DRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRG 641

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G  G PG  G  G  G  G+ G  G  G  G  G  G  G PG  G
Sbjct: 642 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKG 701

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G  G  G  G  G  G +G  G P
Sbjct: 702 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 733

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (380), Expect = 4e-37
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  G+ GE G  GE G  GA G+ G PG  G  G  G  GP G+ G PG
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPG 404

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G+ G  G  G  G  G  G+ G  G PG  G  G  G DG  G  G PG  G
Sbjct: 405 PAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG 464

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G  G +G  G  G P
Sbjct: 465 PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP 496

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  150 bits (380), Expect = 4e-37
 Identities = 63/152 (41%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  GE G  G  G KG+PG  G PG  G+PG +G  G  G  G  G
Sbjct: 330 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 389

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G+ G  G  G PG  G  G  G PG  G  G PG+ G  G+PG  G  G  G
Sbjct: 390 KTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 449

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG+ G  G PG  
Sbjct: 450 KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 481

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (379), Expect = 4e-37
 Identities = 61/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG +G  G  G  G KG  G  G+ GE+G PG  G  GP G  G+ G +GP G  G  G
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 467

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G +G  G  G  G  G+ G  G PG  G PG +G  G  G  G  G +G
Sbjct: 468 ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEG 527

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G +G +G  G PG+ 
Sbjct: 528 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ 559

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (379), Expect = 5e-37
 Identities = 61/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  GE G  GE GV G  G  G  G  G  G QG PG  G  G +G+ G  G
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 476

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G+ G PG  G+ G  G PG  G  G  G  G  G+ G  G  G  G
Sbjct: 477 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRG 536

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G KG  G  G  G  G  G+ G P
Sbjct: 537 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 568

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (379), Expect = 5e-37
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ G  G KG  G  G+ G +G  G  GA G  G  G  G  G  G  GP G+ G  G
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 473

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG +G  GP G  G  G+ G  G  G  G PG  G  G  G  G  G +G PG  G
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAG 533

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G NG  G  G  G  G  G  G  G PG  
Sbjct: 534 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 565

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (378), Expect = 6e-37
 Identities = 57/152 (37%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  GE G  G  G  G  G  G  G  G  G  G  G +G  G  G  G  G
Sbjct: 312 EPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAG 371

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G  G  G  G DG PG  G  G  G+ G+ G PG  G  G+ G
Sbjct: 372 LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPG 431

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G++G  G PG  
Sbjct: 432 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 463

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (378), Expect = 6e-37
 Identities = 63/152 (41%), Positives = 77/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G QGP G  G  G +GE G  G  G +G PG  GPPG  G PG++G  G  G  G  G
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 512

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G+RG +G  G  G  G +G  G  G  G  G PG  G  G PG  G+PG+ G
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERG 572

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G++G  GP+G  G  G +GV G  
Sbjct: 573 AAGLPGPKGDRGDAGPKGADGAPGKDGVRGLT 604

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (378), Expect = 6e-37
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  G  G  G  G  GE G  G  G  G  G  G+ G  G +G  G+ G  G
Sbjct: 375 AKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAG 434

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+PG  G  GP G  G  G  G  G  G  GE G  G  G  G  G+PG  G PG+ G
Sbjct: 435 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 494

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G+ G  GP G RG+ G  G  G  
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGERGVE 526

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (378), Expect = 6e-37
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G MG  G +G  G PG  G  G  G PG  G  G  G+ G  G
Sbjct: 399 EDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 458

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G+RG +G  G PG  GL G  G PGE G  G  G  G  G PG  G  G+ G
Sbjct: 459 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 518

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GPRG  G  G +G  G  
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDA 550

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (377), Expect = 7e-37
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  GA+G+ GV G  G KGA G  G  G +G+PG  G  GP G  G  G
Sbjct: 396 PAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG 455

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG PG  G  G +G+ G  G  G  G  G  G PG  G PG  G+ G  G  G  G  G
Sbjct: 456 AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARG 515

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G RG +G  G  G  
Sbjct: 516 ERGFPGERGVEGPPGPAGPRGANGAPGNDGAK 547

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (377), Expect = 8e-37
 Identities = 59/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G+ G  GAKG  G  G  G  G  G  GP G  G PG  G  G +G  G  G
Sbjct: 360 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMG 419

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G  G+ G PG  G  G  G  GE G  G PG  G  G  G+ G  G  G
Sbjct: 420 FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPG 479

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G  G  G PG  
Sbjct: 480 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPS 511

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  149 bits (377), Expect = 9e-37
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G +G+ G  G  G KG  GE G  G  G PGP G  G  GK G  G  G PG
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPG 461

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G++GP G  G+ G  G  G  G  G+PG  G+PG  G  G  G  G  G  G
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 521

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G P
Sbjct: 522 ERGVEGPPGPAGPRGANGAPGNDGAKGDAGAP 553

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  148 bits (376), Expect = 9e-37
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  GERG  G  G  G PG  G PG+ G  G KG  G PG
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 383

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G+ G PG  G  G  G  G  G  G  G  G  G  G+ G+PG  G
Sbjct: 384 SPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPG 443

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +GE G  GP G  G +G  G  G  
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 475

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  148 bits (376), Expect = 9e-37
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G QGP G  G  G  G  G  GE G+ G  GV G  G  G  G  G+RG  G+ G  G
Sbjct: 468 ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEG 527

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G+ G  G  G  G  G  G PGL G+PG  G  G+PG  G  G  G
Sbjct: 528 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAG 587

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G+ G+ G  G  G  G  G PG  
Sbjct: 588 PKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK 619

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  148 bits (375), Expect = 1e-36
 Identities = 58/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G KG  G +G  G  G  G  G  G  G  G  G +G  G  G PG
Sbjct: 327 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG 386

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G+ G+ G PG  G  G  G  G  G  G PG  G
Sbjct: 387 PDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 446

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G +G  GP G  G+ G  G  G+P
Sbjct: 447 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 478

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  148 bits (375), Expect = 1e-36
 Identities = 64/153 (41%), Positives = 77/153 (50%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            PPG  GP G+ GE GA+G  G  G  GE+G  G  G PG QG+PG  G  G  G  G  
Sbjct: 440 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 499

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G  G  G  G +G+ G+PG  G++G  G  G  G +G PG +G  G  G  G PG  
Sbjct: 500 GVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ 559

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  GE+G  G  G +G  G  G  G  
Sbjct: 560 GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGAD 592

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  147 bits (373), Expect = 2e-36
 Identities = 60/152 (39%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G+ G  G  G  G KG  G  G+PG  G  GP G  G++G+ GP G  G  G
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARG 413

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G +G  G+ G  G  G+ G  G  G  G DG  G  G  G  G  G  G+ G
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 473

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G  G  GP G  GK G  GVPG  
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDL 505

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  147 bits (373), Expect = 2e-36
 Identities = 60/153 (39%), Positives = 66/153 (43%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              G+ GP G  G  G  GE G +G  G  G  G  G  GP G PG +G  GP G  G  
Sbjct: 434 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 493

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G  G  G  G  G  G  G  G  G  G+ G PG  G  G NG  G  G  G  G  
Sbjct: 494 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAP 553

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG+ G  G +GM G RG  G  G  G  G  
Sbjct: 554 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA 586

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  147 bits (373), Expect = 3e-36
 Identities = 59/152 (38%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G KG  G  G  G  G  G KG  G  G PGP G  G  G  G  G  G  G
Sbjct: 348 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAG 407

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G+PG PG  G  G++G  G  G  G  G  G
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 467

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G PG  
Sbjct: 468 ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 499

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  147 bits (372), Expect = 3e-36
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G+ G  G  G  G  G  G PG  G  G  G PG +G  G  G  G  G
Sbjct: 378 LTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERG 437

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G  G+ G  G  G  G  G  GE G  G PG  G+ G  G  G  GK G
Sbjct: 438 VPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 497

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G +G RG RG  G  GV G P
Sbjct: 498 EQGVPGDLGAPGPSGARGERGFPGERGVEGPP 529

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score =  146 bits (371), Expect = 4e-36
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G+ GE G  G  G+ G  G  G  G  GPPGP G  G  G  GP G  G  G
Sbjct: 357 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAG 416

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G  G  G  G  G  G  G  G  G+ G  G  G  G  G  G+ G  G  G
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 476

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G+ G+ G  G P
Sbjct: 477 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 508

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 88.2 bits (219), Expect = 6e-18
 Identities = 24/79 (30%), Positives = 28/79 (35%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            P G +GP G  G  G  G  G+ G  G  G  G  G  GP G PG  G  GP G      
Sbjct: 975  PAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGY 1034

Query: 171  PQGIPGDEGKRGPKGDMGY 189
                     ++       Y
Sbjct: 1035 DLSFLPQPPQQKAHDKGRY 1053

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  164 bits (416), Expect = 1e-41
 Identities = 61/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G +G  G  G  G  G+ GERG  G PG  G  G  G+ GD G  G  G  G PG
Sbjct: 539 NKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPG 598

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G +G+ G  G  G  G  G+ GE G  G  G +G  G  G  G PG  G
Sbjct: 599 AIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKG 658

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             GT G  GE+G  GP+G  G +G  G  G  
Sbjct: 659 ERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAA 690

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  163 bits (414), Expect = 2e-41
 Identities = 64/152 (42%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  G  G +G  G  G  G  GA G+VG PGP G  G+ G +G  G +G PG
Sbjct: 230 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPG 289

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+EGKRG  G++G  G  G  G  G PG  GL G  G  G+ G  G  G  G  G
Sbjct: 290 PPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAG 349

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G NG +G  G  G  G RG  G  G  G  
Sbjct: 350 VRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPA 381

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  163 bits (414), Expect = 2e-41
 Identities = 63/152 (41%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PGL GP+G  G  G  G  G KG  G  G  G  G PGP+GIPG  G  G  G  G  G
Sbjct: 206 LPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVG 265

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G +G+ G KG+ G  G+ G  G  G  G+ G  G  G  G  G PG  G PG  G
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRG 325

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG +G  G  G  G RG  G +G+ G  G  
Sbjct: 326 LPGADGVAGVMGPAGSRGTSGPAGVRGPNGDS 357

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  162 bits (412), Expect = 4e-41
 Identities = 67/152 (44%), Positives = 82/152 (53%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G QGP G+ GE G  G  G +G  G  G  G  G PG  G PG+ G  GP+G  G+PG
Sbjct: 29  PQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPG 88

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG +G RG  G  G  G+ G  G  G PG PG +G PG+ G  G+PG+ G  G  G
Sbjct: 89  TPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPG 148

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G++G  G  GP G  G +G  G PG P
Sbjct: 149 PAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 180

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  162 bits (411), Expect = 5e-41
 Identities = 63/152 (41%), Positives = 81/152 (53%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G +G +G  GA G  G +G +G  G PG  G  GP G  G  G  G  G+ G+PG
Sbjct: 8   GPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPG 67

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  GP+G  G+PG  GL G  G+ G  GLDG+ G+ G  G+ G+ G PG++G
Sbjct: 68  KPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENG 127

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G +G  G  G+ 
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSV 159

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  162 bits (411), Expect = 5e-41
 Identities = 68/152 (44%), Positives = 82/152 (53%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  GAKG  G+ G  G  G PG  G PGP G  G  G RG  G+ G  G
Sbjct: 212 PVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAG 271

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G++G+ G  G  G PG  G +G+ G  GE G  G PG  G+ G PG  GLPG DG
Sbjct: 272 SKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADG 331

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G +G +GP G RG +G +G PG P
Sbjct: 332 VAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEP 363

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  162 bits (411), Expect = 5e-41
 Identities = 68/152 (44%), Positives = 78/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G +G +G  G  G KGE G KG PG VG PGP G  G+EGKRG  G++G  G
Sbjct: 251 PVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAG 310

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  G +G  G  G  G+ G  G  G  G  G+ G NG  G PG+ GL G  G
Sbjct: 311 PPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRG 370

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG+ G  G  G  GP G  G  G  G  G  
Sbjct: 371 FPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPA 402

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  161 bits (409), Expect = 9e-41
 Identities = 66/152 (43%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G+ G +G  G  G  G RGE G PG+ GP GP G  G  G  G KG  G PG
Sbjct: 176 FPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPG 235

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G RG  G +G  G  G  G  G PG  G  G  G  G  G  G+ G PG  G
Sbjct: 236 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSG 295

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ GE G  GP G  G  G  G  G P
Sbjct: 296 EEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLP 327

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  160 bits (407), Expect = 2e-40
 Identities = 65/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  GE GA G  G  G RG  G PG  G  G  G  G  G  GP G  G PG
Sbjct: 503 PAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPG 562

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+ G  G +G KG  G  G  G  GRDG  G PG  G PG  G  G  G+ G  G  G
Sbjct: 563 ERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAG 622

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  GP G  G +G  G  G P
Sbjct: 623 PAGARGIRGERGEPGPVGPSGFAGPAGAAGQP 654

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  160 bits (407), Expect = 2e-40
 Identities = 64/152 (42%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  GE G  G  G +GERG  G  G  GP GP G  G  G  GP G+ G  G
Sbjct: 485 EAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAG 544

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  G+ G  G  G PGL G  G  G DG  G  G  G  G
Sbjct: 545 AVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPG 604

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  GP G  G  GI G  G P
Sbjct: 605 PAGGAGDRGEGGPAGPAGPAGARGIRGERGEP 636

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  160 bits (407), Expect = 2e-40
 Identities = 60/152 (39%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G +G  G +G PGP+G  G+ GK G KG++G  G
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAG 436

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG +G  G +G  G  G  G  G  G  G PG  G+PG  G  G  GK G  G  G
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHG 496

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G RG +G  G  G+ 
Sbjct: 497 EFGLPGPAGARGERGPPGERGAAGPTGPIGSR 528

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  160 bits (406), Expect = 2e-40
 Identities = 64/149 (42%), Positives = 71/149 (47%)

Query: 114 LQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQG 173
                G  G +G  G  G  G  G  G  G  GPPG  G PG  G  G +G  G PG  G
Sbjct: 2   FDAKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAG 61

Query: 174 IPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 233
             G  GK G  G+ G PG  G  G  G PG PG  GI G NG+DG+ G+ G PG  G PG
Sbjct: 62  EDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPG 121

Query: 234 TNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G NG  G  G RG  G+ G  G PG  
Sbjct: 122 APGENGTPGQKGARGLPGERGRVGAPGPA 150

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  160 bits (406), Expect = 3e-40
 Identities = 61/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ G  G+KG  G +G+ G  G  G +G PG +G PGP G  GD G+ GP G  G  G
Sbjct: 566 VAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAG 625

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +GI G+ G+ GP G  G+ G  G  G+ G  GE G  G  G  G  G  G  G  G  G
Sbjct: 626 ARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPG 685

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G  G  G  G  G P
Sbjct: 686 PVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPP 717

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (405), Expect = 3e-40
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G++G  G  G  G  G RGE+G PG  G  GP G  G  G  GP G  G  G
Sbjct: 482 PAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKG 541

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G PG  G+ G  G  GE G  G+ G  G  G  G  GLPG  G
Sbjct: 542 EAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIG 601

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G++G  GP G  G +G  G+ G  
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGER 633

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (405), Expect = 3e-40
 Identities = 61/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG+ G  G  G  G  G +G  G  G +G  G  GP G +G  G++G+ G  G  G PG
Sbjct: 233 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPG 292

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G PG  GL G  G  G PG DG+ G  G  G  G  G  G  G
Sbjct: 293 PSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRG 352

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  GE G+ GPRG  G  G  G  G  
Sbjct: 353 PNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKE 384

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (405), Expect = 3e-40
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  GE G  G  G  G +GE GA G  GPPGP G  G  G  G  G  G PG
Sbjct: 254 AAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPG 313

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G+ G+ G RG  G  G  G +G  G  G  G  G+ G  G +G  G PG  G  G  G
Sbjct: 314 PPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPG 373

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G++G  G  G  G+ G  G  G  
Sbjct: 374 SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPR 405

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (404), Expect = 4e-40
 Identities = 65/152 (42%), Positives = 77/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G KG  G+ GERG  GAPG  G  G  G  G  G  GP G  G PG
Sbjct: 116 VKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG 175

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G+ GP G+ G  G  G  G  GLPG  G  G PG  G +G+PG  G  G  G
Sbjct: 176 FPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPG 235

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G +G+ GP G  G +G  G+ G P
Sbjct: 236 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEP 267

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (404), Expect = 4e-40
 Identities = 64/152 (42%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  G  G +GE+G PG  GPPG  G  G  G+ G  G+ G PG
Sbjct: 839 APGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPG 898

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP+G  G  G  G DG  G  G+ G+ G  G NG+ G+PG  G  G  G
Sbjct: 899 PAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQG 958

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  GP G  GK G  G  G  
Sbjct: 959 APGAVGPAGPRGPAGPSGPAGKIGRIGAVGPA 990

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (404), Expect = 4e-40
 Identities = 66/152 (43%), Positives = 72/152 (47%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             PG  GP G  G +G  GE G  G RGE G  G VGP G  G  G  G +G +GD G PG
Sbjct: 869  TPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPG 928

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             +G  G +G RG  G  G PG  G  G  G PG  G  G  G  G  G  GK G  G  G
Sbjct: 929  DKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVG 988

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G +G  GP G  G  G  G PG P
Sbjct: 989  PAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPP 1020

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (404), Expect = 4e-40
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G  G  G  G  G  GAPG  GPPG  G  G  G  G KG+ G PG
Sbjct: 521 PTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPG 580

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G+ G +G  G  G  G  G  G  GE G  G  G  G  GI G+ G PG  G
Sbjct: 581 LRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVG 640

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G RG  G  G  G  
Sbjct: 641 PSGFAGPAGAAGQPGAKGERGTKGPVGEQGPV 672

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (404), Expect = 4e-40
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  G  G  G +G  G +G  G+ G +G PG  G  GP G  G  G  GP+G  G  G
Sbjct: 866  ERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDG 925

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
              G  GD+G +G +G  G  G  GL G  G  G PG  G  G  G  G  G  G  G+ G
Sbjct: 926  EPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIG 985

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G +G  G +G  G  G  G PG P
Sbjct: 986  AVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPP 1017

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (403), Expect = 5e-40
 Identities = 66/152 (43%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G KGE GA G+ G  G  GE+G  G  G  GP G PG  G RG  G  G PG
Sbjct: 269 PAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPG 328

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  G +G  G  G  G +G  G PGEPGL G  G  G  G  G  G  G  G
Sbjct: 329 ADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVG 388

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG +G  G  G  GPRG  G  G  G  G  
Sbjct: 389 LPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPT 420

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (403), Expect = 5e-40
 Identities = 61/155 (39%), Positives = 67/155 (43%)

Query: 108 EYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMG 167
                G  GP+G  G IG+ G  G  G  G KG  G VG PGP G  G  G+ G  G  G
Sbjct: 152 ARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSG 211

Query: 168 YPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
             GP G  G  G  G KG  G PG  G  G  G  G PG  G  G  G  G+ G+ G  G
Sbjct: 212 PVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAG 271

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  GP G  G+ G  G  G  
Sbjct: 272 SKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEI 306

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (403), Expect = 5e-40
 Identities = 63/152 (41%), Positives = 75/152 (49%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G +G  G  G  GA G +G  GE G+ G  G  GP G  G  G  G RGP G  G  G
Sbjct: 863  HKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRG 922

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
              G PGD+G +G KGD G+ G  GL G  G  G+ G  G  G  G  G  G  G  GK G
Sbjct: 923  DDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIG 982

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G  G+ G +G++G +G  G PG P
Sbjct: 983  RIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPP 1014

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (403), Expect = 6e-40
 Identities = 61/152 (40%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G KG  G  G  G  G  G +G PG VG  G  G  G  G+ GP G  G  G
Sbjct: 218 NAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESG 277

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G+ GP G  G  G+ G  G  G  G PG  G+ G  G  G+PG DG+ G  G
Sbjct: 278 NKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMG 337

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ GT+G  G+ GP G+ G+ G  G+ G  
Sbjct: 338 PAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPR 369

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  159 bits (403), Expect = 6e-40
 Identities = 64/153 (41%), Positives = 75/153 (49%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  GP G+ G IG  G  G  GE G+ G  G VG  G +G PG +G  G +G  G  
Sbjct: 397 GPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQ 456

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G QG  G++G  GP G  G PG  G  G  G PGE GL G  G  G  G  G+ G PG+ 
Sbjct: 457 GVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGER 516

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G  G +G +GP G  G  G  G  G  
Sbjct: 517 GAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPA 549

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (402), Expect = 6e-40
 Identities = 61/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  GE G  G +GE G  G  G  G  G PG  G+ G +G  G  G
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIG 307

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G RG  G  G PG  G+ G  G  G  G  G  G  G +G  G+ G PG  G
Sbjct: 308 PAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMG 367

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G  G  G  G  G  GI+G PG  
Sbjct: 368 PRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPI 399

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (402), Expect = 6e-40
 Identities = 64/152 (42%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G+ G  G  G  G +G  GE+GA G  GP G +G  G  G  G KG+ G  G
Sbjct: 488 KPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVG 547

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  G  G+ G  G  G  G  G PG  G  G  GR+G  G+PG  G PG  G
Sbjct: 548 PAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAG 607

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG  G  G PG  
Sbjct: 608 GAGDRGEGGPAGPAGPAGARGIRGERGEPGPV 639

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (402), Expect = 7e-40
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  GE G +G  G  G  G  G PG+ G PG +G+PG +G  G  G  G  G
Sbjct: 284 AVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRG 343

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G PG +G  G  G PG  G  G  G  G+ GI G+ G  G  G
Sbjct: 344 TSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAG 403

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  GK G  G  G  
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLA 435

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (402), Expect = 7e-40
 Identities = 64/152 (42%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G+ G  G  G +G+RG  G  G  GPPGP G+ G+ G RG  G  G  G
Sbjct: 275 ESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAG 334

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  G  G  GL G  G  G PG  G  G  G  GLPG DG
Sbjct: 335 VMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDG 394

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G  G  G  G  G PG P
Sbjct: 395 RPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKP 426

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (402), Expect = 8e-40
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G  GE G  GERG  G  G+ GP G +G  G  G+RG  G  G  G
Sbjct: 467 PAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIG 526

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G KG+ G  G  G  G  G PG PG  G+ G  G  G  G  GL G  G
Sbjct: 527 SRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTG 586

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  G  G  G +G  G  G  
Sbjct: 587 ATGRDGARGLPGAIGAPGPAGGAGDRGEGGPA 618

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 8e-40
 Identities = 65/152 (42%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +GP G  G  G +G  G  GE GE G  G  G  GP G PG  G+ G  G  G PG
Sbjct: 14  LMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPG 73

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+PG +G RG  G  G PG  G+ G +GL G  G  G PG  G  G PG++G PG+ G
Sbjct: 74  ERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKG 133

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG  G  G  G  
Sbjct: 134 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPA 165

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 8e-40
 Identities = 60/152 (39%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G+ GP+G  G  GA+G +G  G  G KG  G  G PG  G PG  G  G +G  G  G
Sbjct: 245 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTG 304

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G+ G  G  G DG  G+ G  G  G  G  G+ G  G  G PG+ G
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPG 364

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  GP G  G  G+ G+ G P
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRP 396

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 9e-40
 Identities = 65/152 (42%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  GE G  G  G  G RG  G+ G VGP GP G  G  G  G  G  G  G
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELG 187

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  GP+G++G PG  G  G  G  G  GL G  G  G+ G+ G  GLPG  G
Sbjct: 188 PVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRG 247

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           IPG  G  G  G  G  G  G +G  G  G  
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGESGNK 279

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 9e-40
 Identities = 67/163 (41%), Positives = 75/163 (46%)

Query: 100 QGFCNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGK 159
           +G          PG  G  G+ G  G  G  G KG RG  G  G VG PGP G  G +G 
Sbjct: 99  RGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGS 158

Query: 160 RGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGI 219
            GP G  G  G  G PG  G  GPKG++G  G  G  G  G  GE GL G+ G  G  G 
Sbjct: 159 VGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGN 218

Query: 220 PGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            G +GLPG  G  G  G  G  G+ GPRG  G  G  G  G  
Sbjct: 219 AGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR 261

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 1e-39
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  G  GE G  G+ G  G RG  G PG  G  G  G PG  G+RG  G  G  G
Sbjct: 26  APGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARG 85

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G +G +G  G  G  G  G  G+ GEPG  G  G  G  G  G  G  G+ G
Sbjct: 86  FPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVG 145

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  G  G  G PG P
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 177

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 1e-39
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +GP G  G  G KGE G  G  G  G  G  G PG +G+ G  G +G KG  G  G
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRG 583

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G +G RG  G +G PG  G  G  G  G  G  G  G  G+ G  G+ G  G  G
Sbjct: 584 DTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSG 643

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G  G RG +G  G  G  G  
Sbjct: 644 FAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQ 675

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  158 bits (401), Expect = 1e-39
 Identities = 67/152 (44%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  GE G  GE G  G  G +GAPG  G  G QG PG +G +G KG+ G  G
Sbjct: 410 AIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAG 469

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G+ G PG  GL G  GLPG  G  G  G  G  G  G  G  G  G
Sbjct: 470 PPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRG 529

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G KG  G  G  G  G  G PG P
Sbjct: 530 PSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIP 561

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 63/152 (41%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G QGP G +G  G KGE G  G  G +G PG  GP G  G PG+ G  G  G  G  G
Sbjct: 446 NNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAG 505

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G+RG  G  G  G  G  G  G  G  G  G  G  G  G  G  G+PG+ G
Sbjct: 506 ARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERG 565

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  GEKG  G RG+ G +G +G  G P
Sbjct: 566 VAGVPGGKGEKGAPGLRGDTGATGRDGARGLP 597

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 63/152 (41%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G QGP+G  G  G  G  G  G RG+ G  G+ G PG  G  G  G  G  G  G PG
Sbjct: 671 PVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPG 730

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G RG +G +G  G  G  G  G  GE G  G PG  G  G PG  GL G  G
Sbjct: 731 AAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPG 790

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ GE+G+ G  G+ G+ G  G+ G P
Sbjct: 791 FLGLPGSRGERGLPGVAGSVGEPGPLGIAGPP 822

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 59/153 (38%), Positives = 65/153 (42%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              GL G IG  G  G  G+ G  G  G  G  G  G  G +G PG  G  G  G  G  
Sbjct: 592 GARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAA 651

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G  G+ G +GP G+ G  G  G  G  G PG  G  G  G  G  G  G  G PG  
Sbjct: 652 GQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAA 711

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G +G  G  GP G  GK GI G  G  
Sbjct: 712 GRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQ 744

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G +GE+G+ G  G  G PG  GP G  G  G  G  G  G  G PG
Sbjct: 185 ELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPG 244

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+GIPG  G  G  G  G  G  G  G  G  G  G  G  G+ G  G  G++G  G  G
Sbjct: 245 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTG 304

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G  G+RG  G +GV G  
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVM 336

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 57/152 (37%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G++G  G +G  G  G  G +G  G  GP G +G  G  G  G  G  G PG
Sbjct: 500 LPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPG 559

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G KG+ G PG  G  G  G  G  GL G  G  G  G  G  G  G  G
Sbjct: 560 IPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAG 619

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G  G  G SG  G  G  
Sbjct: 620 PAGPAGARGIRGERGEPGPVGPSGFAGPAGAA 651

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 64/152 (42%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G+ G  GE GV G +G +G PG  G PG +GI G  G  G  G  G PG
Sbjct: 56  PPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPG 115

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G+ G  G  G  G  G  GR G PG  G  G  G  G  G  G  G  G  G
Sbjct: 116 VKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG 175

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G  G  G  G +G  G  G P
Sbjct: 176 FPGAPGPKGELGPVGNPGPAGPAGPRGEVGLP 207

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (400), Expect = 1e-39
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  GE GV G  G KG  G  G  G  G  G +G RG  G +G PG
Sbjct: 545 AVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPG 604

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  GD G+ GP G  G  G  G+ G  G PG  G  G  G  G  G PG  G  G  G
Sbjct: 605 PAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKG 664

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G  G  G  G  G  G  
Sbjct: 665 PVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPR 696

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (399), Expect = 1e-39
 Identities = 61/151 (40%), Positives = 73/151 (48%)

Query: 112 PGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGP 171
               G  G  G +G +G  G  G  G +G  G  G PG  G  G  G RGP G  G  G 
Sbjct: 3   DAKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGE 62

Query: 172 QGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 231
            G PG  G+ G +G  G  G  G  G  GLPG  G+ G  G +G+ G PG  G+ G+ G 
Sbjct: 63  DGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGA 122

Query: 232 PGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           PG NGT G+KG  G  G RG+ G  G  G  
Sbjct: 123 PGENGTPGQKGARGLPGERGRVGAPGPAGAR 153

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (399), Expect = 1e-39
 Identities = 57/152 (37%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G +G  GA G  G  G  G++G  G  GP GP G  G  G+RG  G +G  G
Sbjct: 584 DTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSG 643

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G KG+ G  G +G  G  G  G  G  G PG  G  G  G  G  G  G
Sbjct: 644 FAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTG 703

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  GP G  G  G  G  G  
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKE 735

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (399), Expect = 2e-39
 Identities = 60/152 (39%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G++G  G  G RG  G  G  G PG  G  G  G  G  G  G  G
Sbjct: 326 LPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEG 385

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G+PG +G+ GP G  G  G  G  G  G  G  G  G PG  G  G+ G  G PG DG
Sbjct: 386 PVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDG 445

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G+ G +G +G +G  G  G P
Sbjct: 446 NNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLP 477

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (399), Expect = 2e-39
 Identities = 63/152 (41%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G KGE G KG +G +G  G +G  G  GPPGP G  G  G RG  G  G  G
Sbjct: 647 PAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTG 706

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G PG  G  G++G+ G  G  G  GR+G  G  G  G  G+ G
Sbjct: 707 FPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKG 766

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G  G  GP+G  G  G  G+PG+ 
Sbjct: 767 PTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSR 798

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (399), Expect = 2e-39
 Identities = 63/152 (41%), Positives = 77/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +GP G+ G+ G KG +G+ G RG  G  G  G  GP G+ G +G++G +G  G PG
Sbjct: 413 FPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPG 472

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG+PG  G  G  G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  G
Sbjct: 473 FQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSG 532

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  GE G  GP G  G +G  G+PG  
Sbjct: 533 PPGPDGNKGEAGAVGPAGAPGPAGPPGIPGER 564

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (399), Expect = 2e-39
 Identities = 64/152 (42%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G KGE+G  G  G  G  G +G  G+ G  GP G PG+ G  G  G  G  G
Sbjct: 173 PPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAG 232

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  GP+G  G  G  G  G  GL GEPG  G  G +G  G PG  G PG  G
Sbjct: 233 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPG 292

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G+ G PG+ 
Sbjct: 293 PSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSR 324

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 60/152 (39%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G KG  G++G+ G  G  G  G PG  G PG  G  G +G+ G  G
Sbjct: 560 IPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAG 619

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG +G+ G  G  G  G  G  G+PG  G  G  G  G  G  G  G  G
Sbjct: 620 PAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVG 679

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GPRG+ G +G+ G PG  
Sbjct: 680 AAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAA 711

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +GP G++G  G  G +G +G  G  G  G  G  G  G  G  G  GP G  G  G
Sbjct: 506 ARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERG 565

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG +G++G  G  G  G  G DG  GLPG  G  G  G  G  G  G  G  G  G
Sbjct: 566 VAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAG 625

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  GP G  G +G  G PG  
Sbjct: 626 ARGIRGERGEPGPVGPSGFAGPAGAAGQPGAK 657

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 65/153 (42%), Positives = 70/153 (45%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  GPIG  G  G  G  G KGE G  G PG  GP GP+G  G  G  GP G  G  
Sbjct: 160 GPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNA 219

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G+PG +G  G  G  G PG  G  G  G  G  G  G  G  G  G  G  G  G  
Sbjct: 220 GPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNK 279

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  G  G +G  G RG +G  G  G P
Sbjct: 280 GEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPP 312

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP+G  G  G  G  G  G +GE+G  G VG  GP G  G  G  GP G +G  G
Sbjct: 632 ERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAG 691

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  GD G  G  G  G  GR G  G  GL G PG  G  G+ G+ G  G  G  G+ G
Sbjct: 692 PAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSG 751

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G +G  G PG  
Sbjct: 752 ETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQ 783

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 65/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G +G+ G  GE G  G PG  G  G  G  G  G  G  G MG  G
Sbjct: 281 EPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAG 340

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G RGP GD G PG  GL G  G PG PG  G  G+ G  G+PG DG PG  G
Sbjct: 341 SRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIG 400

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP+G  G+ G  G  G  
Sbjct: 401 PAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNV 432

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 66/152 (43%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G  G  G  G+ GPPGP G  G EG RGP+GD G  G
Sbjct: 689 AAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVG 748

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G+ G  G  G  G  G PG  GL G PG  G+ G  G+ GLPG  G
Sbjct: 749 RSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAG 808

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RG  G  G  GV G P
Sbjct: 809 SVGEPGPLGIAGPPGARGPPGNVGNPGVNGAP 840

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 59/153 (38%), Positives = 67/153 (43%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              G  G  G  G IGA G  G  G+RGE G  G  GP G +GI G+ G+ GP G  G+ 
Sbjct: 586 GATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFA 645

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G  G  G +G +G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  
Sbjct: 646 GPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMT 705

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  G  G +G  G  G  G  G  G  
Sbjct: 706 GFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIR 738

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 72/152 (47%), Positives = 79/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  GP G  G  G  G  G +GERG  G  G VG PGP GI G  G RGP G++G PG
Sbjct: 776 PPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPG 835

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G+ G  G+ G PGR G  G  G  G PG  G PG  G  G  G+ G  G  G
Sbjct: 836 VNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRG 895

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GPRG  G  GI G  G P
Sbjct: 896 EPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEP 927

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG+ G  G  G  G KGE G  G RG+ GA G  G  G  G  G  G  G  GD G  G
Sbjct: 557 PPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGG 616

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG +G+ G PG +G  G  G  G  G  G  G  G  G  G+ G  G  G
Sbjct: 617 PAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQG 676

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG +G  G+ G P
Sbjct: 677 PVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFP 708

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  157 bits (398), Expect = 2e-39
 Identities = 62/152 (40%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G+ G  GE G+ G RG  G+PG +GP G +G  G  G  G  G +G  G
Sbjct: 344 TSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAG 403

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G  GPKG  G PG+ G  G  GL G  G  G  G NG  G PG  G+ G+ G
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKG 463

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G+ GP G  G++G  G  G  
Sbjct: 464 EQGPAGPPGFQGLPGPAGPAGEAGKPGERGLH 495

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 2e-39
 Identities = 64/152 (42%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G +G+ G  G  G  G  G  G PG  G  GP G PG  GK G +G  G  G
Sbjct: 686 PVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQG 745

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  GP G +G  G  G  G  G PG PG  G+ G  G  G+PG  G  G  G
Sbjct: 746 PVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPG 805

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G+ G  G  G+ GP G RG  G  G PG  
Sbjct: 806 VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVN 837

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 62/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG +G  G  G IG++G  G  G  G KG  G VGP G  G  G  G  G +G  G PG
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPG 571

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G RG  G  G  G  GL G  G PG  G  G  G  G  G  G  G  G  G
Sbjct: 572 GKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRG 631

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G+ G  G  GT 
Sbjct: 632 ERGEPGPVGPSGFAGPAGAAGQPGAKGERGTK 663

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 65/152 (42%), Positives = 77/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ GP G +G  G  G  G  G+ G  G PG++GP G  G PG+ G  G +G +G PG
Sbjct: 332 VAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPG 391

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP+G+ G  G  G  G  G PG+PG  G  G  G  G PG DG  G  G
Sbjct: 392 IDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQG 451

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GEKG  GP G  G  G+ G  G  
Sbjct: 452 PPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPA 483

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  GA+G  G +GE G  G  G  GP G  G PG +G+RG KG +G  G
Sbjct: 611 DRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQG 670

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G +G  G  G  G  G  G  G  G  GR G  G  G  G PG  G
Sbjct: 671 PVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPG 730

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G  G++G  G  G  
Sbjct: 731 AAGKEGIRGPRGDQGPVGRSGETGATGPTGFV 762

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 61/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G QGP G  G  G  G  G  GE G+ G  G+ G  G  G  G  G+RGP G+ G  G
Sbjct: 461 EKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAG 520

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G  G  G  G  G PG  G  GIPG  G+ G+PG  G  G  G
Sbjct: 521 PTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPG 580

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G  G  G  G  G  G  
Sbjct: 581 LRGDTGATGRDGARGLPGAIGAPGPAGGAGDR 612

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 61/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G+ G +G  G  G  G+ G  G PG  G  G+ G  G  G  G  G
Sbjct: 140 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAG 199

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G  GP G  G  G  GL G  G  G PG+ G PG  G  GIPG  G  G  G
Sbjct: 200 PRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATG 259

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  GN+G+ G  G PG P
Sbjct: 260 ARGLVGEPGPAGSKGESGNKGEPGAVGQPGPP 291

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 63/152 (41%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G+ G  G  G  G  G  G  G  G +G  GP G PG  G +G  G +G PG
Sbjct: 134 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPG 193

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G+ G  G  G  G  G  G +GLPG  G  G+PG  G  G+PG  G+PG  G
Sbjct: 194 PAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVG 253

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G++G+SG  G PG  
Sbjct: 254 AAGATGARGLVGEPGPAGSKGESGNKGEPGAV 285

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 62/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G+ G+ G KGE G  G  G  GA G VGP G  G  G+ G+ GP G +G  G
Sbjct: 848 NPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAG 907

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G +GD G PG  G  G  G  G  GL G+PG  G  G  G  G  G  G
Sbjct: 908 AVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAG 967

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  G  G  G +G  G+ G+ 
Sbjct: 968 PRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQ 999

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 64/152 (42%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G+KG +G  G  G  G  G  GA G  G  G QG  G++G  GP G  G PG
Sbjct: 419 PTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPG 478

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ GK G +G  G  G  G  G  G  G PG  G  G  G  G  G  G PG DG
Sbjct: 479 PAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDG 538

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  GV G P
Sbjct: 539 NKGEAGAVGPAGAPGPAGPPGIPGERGVAGVP 570

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 59/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G +G  G  G  G  G  G  G  GA G  G PG  G PG  G RG  G +G  G
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 256

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ GP G  G  G  G  G  G PG PG  G  G+ G  G  G  G PG  G
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPG 316

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G+ G  G  G  G  G +G  G  G  
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPA 348

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (397), Expect = 3e-39
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G KGE GA G  G  G  G  G PG  G  G  G  G++G  G +GD G  G
Sbjct: 530 PSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATG 589

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G  G  G  G  G  G  G  GI G  G  G  G  G  G  G
Sbjct: 590 RDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAG 649

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  GP G +G  G  G  G  
Sbjct: 650 AAGQPGAKGERGTKGPVGEQGPVGPQGPVGAA 681

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 3e-39
 Identities = 63/152 (41%), Positives = 78/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G++GE G  G  G  G  G  G PG  G  G +G  G++G  GP+G +G  G
Sbjct: 623 PAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAG 682

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP+GD G  G  G  G  G  G PG  G+ G  G  G  GK+G+ G  G
Sbjct: 683 PPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRG 742

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +GE G TGP G  G+ G  G PG+ 
Sbjct: 743 DQGPVGRSGETGATGPTGFVGEKGPTGEPGSA 774

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 3e-39
 Identities = 61/152 (40%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG+ G +G+ G +G  G  G +G  G  G PGV G PG  G  G+ G  GP G  G PG
Sbjct: 803 LPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPG 862

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  GP G +G  G +G  G+ G  GEPG  G  G  G  G  G  G  G  G
Sbjct: 863 HKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRG 922

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+KG+ G RG+ G  G+ G+ G  
Sbjct: 923 DDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHH 954

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 61/152 (40%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GPIG  G  G  G +G  G +G  G PG  G  G  G+ G  G  GP G+ G  G
Sbjct: 392 IDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQG 451

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G+ G +G++G +G  G PG  GL G  G  GE G  G  G +G  G+PG  G  G+ G
Sbjct: 452 PPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERG 511

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G RG  G  G +G  G  
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPPGPDGNKGEA 543

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 63/152 (41%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  GQ G  GA+G  G  G+ GE G PG  G PG +G+PG +G RG  G  G PG
Sbjct: 35  PPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPG 94

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +GI G  G  G  G  G PG  G  G  G  G PG  G  G  G  G  G  G  G  G
Sbjct: 95  FKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARG 154

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G  G  G  G  G  G  G  G  
Sbjct: 155 SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEL 186

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G+ G  G  G +G  G  G  G  G  G  G  G  G  G  G +G+ G  G
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRG 325

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  G+ G +G  G PG  G+ G  G  G PG  G  GK+G
Sbjct: 326 LPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEG 385

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  GP G RG++G  G PG  
Sbjct: 386 PVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPK 417

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 60/152 (39%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G +G  G +GE G  G  G  G  G  G PG +G  G +G  G +G +G  G
Sbjct: 617 PAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQG 676

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G PG  G  G PG +G+ G PG  G  GK+G
Sbjct: 677 PVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEG 736

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G  G  G  G +G  G  G +G  G  G  
Sbjct: 737 IRGPRGDQGPVGRSGETGATGPTGFVGEKGPT 768

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 59/153 (38%), Positives = 71/153 (46%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  G  G  G +G  G  G  G  G KGA G+ G  G  G+PG  G  GP G  G  
Sbjct: 199 GPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGAT 258

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G +G+ G+ G  G KG+ G  G  G  G+ G PG  G +G  G  G  G  G  G PG  
Sbjct: 259 GARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLR 318

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG+ G  G  G+ G  G  G  G +G  G  
Sbjct: 319 GNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVR 351

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 60/152 (39%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  GA+G  G++G +GEKG  G  GPPG QG+PG  G  G  G  G  G
Sbjct: 434 LAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERG 493

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G+ G PG  G  G  G  G  G  G PG +G  G  G  G  G  G
Sbjct: 494 LHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPG 553

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G+ G  G +G+ G  G+ G  
Sbjct: 554 PAGPPGIPGERGVAGVPGGKGEKGAPGLRGDT 585

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (396), Expect = 4e-39
 Identities = 59/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G +GE G  G  G  G RG +G  G  GP GP G  G  G  G  G  G  G
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERG 661

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G++G  GP+G +G  G  G  G  G  G  G  G  G  G  G  G+ G PG  G
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSG 721

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G RG RG  G  G  G  
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGPVGRSGET 753

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 4e-39
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G +G  G  G PG VGP GP G PG  G RG  G  G  G
Sbjct: 845 RDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVG 904

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP+G  G  G  G  G  G+ G+ G +G+ G  G+ G  G  G PG  G
Sbjct: 905 PAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVG 964

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G  
Sbjct: 965 PAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIR 996

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 5e-39
 Identities = 56/152 (36%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G +G  G  G  G  G PG +G  G  G+ G +G  G  G
Sbjct: 542 EAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIG 601

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G RG  G  G  G  G  G  G  GEPG  G  G  G  G  G+ G  G+ G
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERG 661

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  G  G  
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPA 693

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 5e-39
 Identities = 55/152 (36%), Positives = 61/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G++G  G  G  G KG  G +G  G  G  G +G+PG  G  GP G  G  G
Sbjct: 554 PAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRG 613

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  G
Sbjct: 614 EGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVG 673

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G  
Sbjct: 674 PQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMT 705

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 5e-39
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G +G  G  G  G  G +GE G  G  G VGPPG  G  G  G +G  G  G  G
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAG 238

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG  G  GP G  G  G  GL G  G  G  G  G  G  G  G PG  G  G++G
Sbjct: 239 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEG 298

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G  G  GP G RG  G  G+PG  
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGAD 330

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 5e-39
 Identities = 63/152 (41%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G IG  G  G  G  G  G RG  GA GV G  GP G  G  G  G +G  G  G
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSG 358

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G RG  G  G  G  G +G  GLPG  G  G  G  G  G  G  G PG  G
Sbjct: 359 RPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKG 418

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GEKG  G  G RG  G +G  G  
Sbjct: 419 PTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQ 450

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 5e-39
 Identities = 66/152 (43%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPGLQG  G+KGE G  G  G +G  G  G  G  G PG +G+ G+ G  GP G  G  G
Sbjct: 452 PPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERG 511

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G  G  G DG  G  G  G  G PG  G  GIPG+ G+ G  G
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPG 571

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G TG  G  G  G+ G  G P
Sbjct: 572 GKGEKGAPGLRGDTGATGRDGARGLPGAIGAP 603

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 5e-39
 Identities = 56/152 (36%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G +GE G  G  G  GA G+ G  G  G  G  G  GP G  G PG
Sbjct: 596 LPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPG 655

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G +G  G +G +G  G +G  G  G  G  G  G  G  G  G+ G  G  G+ G
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTG 715

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G  G  G  G  G  G  G  G  
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPV 747

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  156 bits (395), Expect = 6e-39
 Identities = 61/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P GL G  G+ G IG  G  G  G  G  G  G  G PG  G  G+ G  G +G  G  G
Sbjct: 386 PVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDG 445

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G +G+ G  G  G  G  GLPG  G  G  G+ G  G+ G+ GLPG  G
Sbjct: 446 NNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAG 505

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G  GP G  G  G +G PG  
Sbjct: 506 ARGERGPPGERGAAGPTGPIGSRGPSGPPGPD 537

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 58/152 (38%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G++G  G  G  G  G  G +G PG  G PG  G+ G  G  G +G  G  G
Sbjct: 290 PPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAG 349

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  GD G+ G  G MG  G  G  G  G  G+ G  G+PG +G  G  G  G  G+ G
Sbjct: 350 VRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAG 409

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G  G+ G  G P
Sbjct: 410 AIGFPGPKGPTGEPGKPGEKGNVGLAGARGAP 441

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG+ G  G  G  G +GE G  G  G KG  G  G PG +G  G  G RG  G  G  G
Sbjct: 389 LPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNG 448

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG PG +G +G KG+ G  G  G  G  G  G  G  G PG  G+ G  G  G  G  G
Sbjct: 449 AQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARG 508

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G TGP G+RG SG  G  G  
Sbjct: 509 ERGPPGERGAAGPTGPIGSRGPSGPPGPDGNK 540

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 60/152 (39%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G++G  G+ G  G  G  G  G RG  G +G+PG
Sbjct: 356 DSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPG 415

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G+ GK G KG++G  G  G  G DG  G  G  G+ G  G  G  G  G PG  G
Sbjct: 416 PKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQG 475

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  GE G  G RG  G+ G+ G  G  
Sbjct: 476 LPGPAGPAGEAGKPGERGLHGEFGLPGPAGAR 507

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  G  G  GV G  G  G+ G  GP G +G  GD G+ G  G MG  G
Sbjct: 311 PPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRG 370

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  G +G +G PG  G  G  G  G  G  G  G  G  G  G+ G PG+ G
Sbjct: 371 FPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKG 430

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G +G  G+ GV G  
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEK 462

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 59/152 (38%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ G  G KGE GA G  G  G  G  GA G+ G  G  G  G  G RG  G  G  G
Sbjct: 563 ERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAG 622

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G+RG  G +G  G  G  G  G PG  G  G  G  G  G  G  G  G  G
Sbjct: 623 PAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAG 682

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G +G  G  G  
Sbjct: 683 PPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRT 714

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 60/153 (39%), Positives = 70/153 (45%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
             PG  GP G +GE+G  G  G  G  G  G  G+ G  G  G+PG  G  G  G  G P
Sbjct: 190 GNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIP 249

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G  G  G RG  G+ G  G  G  G  G PG  G  G PG +G +G  G  G  G  
Sbjct: 250 GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPA 309

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G  G  G  G  G  G +G+ G  G+ 
Sbjct: 310 GPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSR 342

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 6e-39
 Identities = 64/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  GEIG  G  G  G RG  G+ G+ G  G  G+ G  G RG  G  G  G
Sbjct: 293 PSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRG 352

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G+ G  G  G+PG  G  G  G  G  GL GI GR G  G  G  G  G  G
Sbjct: 353 PNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIG 412

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  GE G  G +GN G +G  G PG  
Sbjct: 413 FPGPKGPTGEPGKPGEKGNVGLAGARGAPGPD 444

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 7e-39
 Identities = 57/152 (37%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+QG  G++G  G  G  G+ G  G  G  G  G  G  G  G  G  G +G+ G PG
Sbjct: 455 LQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPG 514

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G +G  G PG  G  G  G  G  G  G  G  G+ G  G  G+PG  G
Sbjct: 515 ERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKG 574

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G TG  G RG  G  G PG  
Sbjct: 575 EKGAPGLRGDTGATGRDGARGLPGAIGAPGPA 606

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 7e-39
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG QG  G  G  G  G  G++G  G  G  G  G PG +G PG  G+ G  G  G  G
Sbjct: 77  VPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARG 136

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G +G  G  G  G  G  G PG  G  G  G  G PG  G
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAG 196

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G++GP G  G +G NG+PG  
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAK 228

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 7e-39
 Identities = 59/152 (38%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G KG +G +G +G +G  G  G PG VG  GP G  GD G  G  G  G  G
Sbjct: 653 QPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAG 712

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G  G  G+ G+ G  G  G  G  G  G  G  G  G+ G  G+ G
Sbjct: 713 RTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPG 772

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G+ G  G  G  G  G  G P
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGERGLP 804

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 7e-39
 Identities = 63/152 (41%), Positives = 74/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  G+ G  G +GE GAPG  G PG +G  G  G+RG  G  G  G
Sbjct: 92  LPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAG 151

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  GP G +G  G  G  G  G  GE G  G PG  G  G  G+ GLPG  G
Sbjct: 152 ARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSG 211

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G +G  G  G+ G PG P
Sbjct: 212 PVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLP 243

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (394), Expect = 7e-39
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G+ G +G  G  GP G  G  G  G  G  G+ G  G
Sbjct: 710 AAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTG 769

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP+G +G PG +GL G  G  G PG+ G  G  G  GI G  G  G  G
Sbjct: 770 EPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPG 829

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G NG  G  G  GN G  G  G  G P
Sbjct: 830 NVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQP 861

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 8e-39
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL GP G  GE G  GE G+ GE G  G  G  G  GP G  G  G  GP G  G  G
Sbjct: 473 FQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSG 532

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G++G+ G  G  G PG  G  G  G  G  G+ G  G  G  G+ G  G  G+DG
Sbjct: 533 PPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDG 592

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G+RG+ G  G  G  
Sbjct: 593 ARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPA 624

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 8e-39
 Identities = 65/152 (42%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G +G+KG  G  G  G  G  G +G  G  G  G  G  G+ G  G  G +G PG
Sbjct: 755 ATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPG 814

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P GI G  G RGP G++G PG  G  G  G  G PG DG PGR+G  G  G+ G PG  G
Sbjct: 815 PLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAG 874

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  GNRG+ G  G  G  
Sbjct: 875 PPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPA 906

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 8e-39
 Identities = 63/153 (41%), Positives = 80/153 (52%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
              G +G  G  G +G  G +G+ G  G +G PG VG PG  G PG+ G+ G  G+ G P
Sbjct: 796 GSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPP 855

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G PG +G+RG  G+ G PG +G  G  G PG+ G  G PG  G  G  G  G  G  
Sbjct: 856 GRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPS 915

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G +GE G  G +G +G  G NG+ G P
Sbjct: 916 GPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLP 948

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 9e-39
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G++GERGE G  G  G  GP G  G  G +G +G  G  G
Sbjct: 608 GAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVG 667

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG  G +G  G  G  G  G  G  G  G  G  G+ G PG  G  G PG  GL G  G
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPG 727

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G +G  G+SG  G  G  
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPT 759

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 9e-39
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G +G  G +G  G  G  GV+GP G +G  G  G RGP GD G PG
Sbjct: 302 STGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPG 361

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  G  G++G  G+ G  G  G+ G PG  G  G  G  G  G  G  G  G
Sbjct: 362 EPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTG 421

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G+ G RG  G  G NG  G P
Sbjct: 422 EPGKPGEKGNVGLAGARGAPGPDGNNGAQGPP 453

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 9e-39
 Identities = 63/152 (41%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PGL GP G  G  G  G  G +G  G  G  G  GP GP G  G+ G  G  G  G  G
Sbjct: 362 EPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTG 421

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG++G  G  G  G PG  G +G  G PG  G+ G  G  G  G PG  GLPG  G
Sbjct: 422 EPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAG 481

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE+G+ G  G  G +G  G  G P
Sbjct: 482 PAGEAGKPGERGLHGEFGLPGPAGARGERGPP 513

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 9e-39
 Identities = 63/152 (41%), Positives = 78/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G+ G  G  G  G +G RGE+G PG VGP G  G  G  G+ G KG+ G  G
Sbjct: 605 PAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKG 664

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G +GP G  G PG +G  G  G  G+ G  G+ G  G  G  G  G  G  G
Sbjct: 665 PVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTG 724

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G++G+ GPRG++G  G +G  G  
Sbjct: 725 PPGPPGAAGKEGIRGPRGDQGPVGRSGETGAT 756

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 9e-39
 Identities = 58/152 (38%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G +GE G  G  G  G  G +G  G+ G  GP G  G  G
Sbjct: 590 RDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAG 649

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G+RG KG +G  G +G  G  G  G PG  G  G  G  G  G  G+ G  G
Sbjct: 650 AAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPG 709

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+TGP G  G +G  G+ G  
Sbjct: 710 AAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPR 741

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ G +G  G  G  G  GV+G  G+ G PG  G  GP+G PG  G  GP G  G  G
Sbjct: 329 ADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVG 388

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             GI G  G  GP G  G  G IG  G  G  GEPG  G  G  G+ G  G  G  G +G
Sbjct: 389 LPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNG 448

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G +G  G  G  G+PG  
Sbjct: 449 AQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPA 480

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 1e-38
 Identities = 58/155 (37%), Positives = 71/155 (45%)

Query: 108 EYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMG 167
                G +G  G +G+ G  G  G  G  G  G  G  GP G  G  G  G  GP+G +G
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLG 787

Query: 168 YPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
            PG  G+PG  G+RG  G  G  G  G  G  G PG  G  G  G  G++G PG+ G  G
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDG 847

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G+ G  G RG  G +G  G  G  
Sbjct: 848 NPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPV 882

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  155 bits (393), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G KG  G  G  G+ G+ G  G  G  G PG  G PG +G RG  G+ G  G
Sbjct: 86  FPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVG 145

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G +G  G IG  G  G PG PG  G  G  G  G  G  G  G+ G
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVG 205

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG +G  G  G  GP G  G  G  G+PG  
Sbjct: 206 LPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVA 237

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G +G  G +G  G KGE+G  G PG  G PGP G  G+ GK G +G  G  G
Sbjct: 440 APGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFG 499

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+RGP G+ G  G  G  G  G  G PG DG  G  G  G  G  G  G  G
Sbjct: 500 LPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPG 559

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           IPG  G  G  G  G +G  G  G  G  G  
Sbjct: 560 IPGERGVAGVPGGKGEKGAPGLRGDTGATGRD 591

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 57/152 (37%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G++G  G  GE G  G +G  GA G  GP G  G  G  G  GP G  G+PG
Sbjct: 650 AAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPG 709

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G PG  G +G  G  G+ G  G  G  G  G  G  G  G  G
Sbjct: 710 AAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTG 769

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG+ G  G  G  G  G  G  G+ G  G  
Sbjct: 770 EPGSAGPPGPPGPQGLLGAPGFLGLPGSRGER 801

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 61/153 (39%), Positives = 67/153 (43%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  GP G  G  G KGE+G  G  G  G  G  G  G  G+ G  G  G  G  G P
Sbjct: 166 GPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLP 225

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G +G  G  G  G  G  G  G  G  G  G  G  GL G PG  G  G  G  G PG  
Sbjct: 226 GAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAV 285

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G +GE+G  G  G  G +G  G PG  
Sbjct: 286 GQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLR 318

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G +G+ G  G+KGE G KGE G  G PG  GP G +G  G  G+ GP G  G PG
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPG 316

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  G  G  G  G  G  G  G  G  G +G  GR G  G+ G  G PG  G
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G  G  G  G  G  G  
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEA 408

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G+ GA+G  G +G  G  G  G  G  G  G  G  G  G  G  G+PG
Sbjct: 119 EPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG 178

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G  G  G  G  G  GL G  G  G  G NG+ G  G  GLPG  G
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAG 238

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G+ G PG  
Sbjct: 239 APGLPGPRGIPGPVGAAGATGARGLVGEPGPA 270

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G +G  G++G  G  G  G  G  G  G  GP G+ G  G  G  G+ G  G
Sbjct: 308 PAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMG 367

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G PG  G  GP G  G  G  G+DGR G  G  G  G  G  G  G  G  G PGK G
Sbjct: 368 PRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPG 427

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP GN G  G  G+ G  
Sbjct: 428 EKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQ 459

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  GV+GE+GE+G  G  G  G  G  G  G+ G  G+ G  G
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHG 496

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG  G RG +G  G  G  G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 497 EFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAG 556

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G+ G +G +G  G+ G  G  
Sbjct: 557 PPGIPGERGVAGVPGGKGEKGAPGLRGDTGAT 588

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +G  G+ G +G  G  G  G PG  G PGP+G  G  G  GP G  G  G
Sbjct: 143 RVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRG 202

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+PG  G  GP G+ G  G  G  G  GLPG  G  G+PG  G+ G  G  G  G  G
Sbjct: 203 EVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARG 262

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G KG +G +G  G  G  G PG  
Sbjct: 263 LVGEPGPAGSKGESGNKGEPGAVGQPGPPGPS 294

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G +GE G  G  GP GP G  G+ G  G  G +G PG
Sbjct: 158 SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPG 217

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +G  G  G  G  GL G  G+PG  G  G  G  G+ G PG  G  G+ G
Sbjct: 218 NAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESG 277

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G  GP G  GK G  G  G  
Sbjct: 278 NKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPA 309

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  G  GA+GE G  GERG  G  G +G  GP G PG +G +G  G +G  G
Sbjct: 491 ERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAG 550

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G  G PG  G  G  GL G+ G  G  G  G+ G  G  G  G  G
Sbjct: 551 APGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAG 610

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RG RG+ G  G  G  
Sbjct: 611 DRGEGGPAGPAGPAGARGIRGERGEPGPVGPS 642

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 64/152 (42%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  GQKG  G  GE G  G  G  GA G  G  GP G  G  G  GP G  G PG
Sbjct: 122 APGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPG 181

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G  GP G  G  G +GL G  G  G PG  G  G  G  G  G  G+ G  G
Sbjct: 182 PKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPG 241

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G  G RG  G  G  G+ 
Sbjct: 242 LPGPRGIPGPVGAAGATGARGLVGEPGPAGSK 273

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G +GA G  G +G+ G  G  G  G  G  G PG  G  GP G  G  G
Sbjct: 674 PQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAG 733

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +GI G  G +GP G  G  G  G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 734 KEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLG 793

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG+ G  G  G+ G  G  G  GI G PG  
Sbjct: 794 LPGSRGERGLPGVAGSVGEPGPLGIAGPPGAR 825

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 62/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  GA G  G  G  G  G PG  G  G +GI G  G +GP G  G  G
Sbjct: 695 PRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETG 754

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G++GP G+ G  G  G  G  GL G PG  G+PG  G  G+PG  G  G+ G
Sbjct: 755 ATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPG 814

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G  GN G +G  G  G  
Sbjct: 815 PLGIAGPPGARGPPGNVGNPGVNGAPGEAGRD 846

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 59/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G +G  GV G +GEKGAPG+ G  G  G  G  G  G  G  G  G
Sbjct: 548 PAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAG 607

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  GP G  G  G  G  G  G  G  G  G  G  G  G  G+ G  G  G
Sbjct: 608 GAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVG 667

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G +G  G  G  
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDA 699

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 61/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G +G  G  GA+G  G  G  G  G  G  GPPG  G PG +G+ GP G+ G  G
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAG 196

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  G  G +G PG  G +G  G  G  GL G+ G  G+ G  G  G  G  G
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 256

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  G +G  G  G  G  G P
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQP 288

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (392), Expect = 1e-38
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G  G  G+ G  G  G  G  G PG +G  G  G  G  G  G  G
Sbjct: 188 PVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRG 247

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G +G PG  G  G  G  GEPG  G PG  G  G  GK G  G+ G
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIG 307

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  G RG  G  G+ GV G  
Sbjct: 308 PAGPPGPPGLRGNPGSRGLPGADGVAGVMGPA 339

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 1e-38
 Identities = 64/152 (42%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G +G KG  G  G  G  G PG  G  G  G  G  G RG +G  G  G
Sbjct: 749 RSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAG 808

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G  G PG +G  G +G PGE G DG PG +G  G  G+ G  G+ G
Sbjct: 809 SVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 868

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  GK G  G PG  
Sbjct: 869 TPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPA 900

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 1e-38
 Identities = 59/152 (38%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G++G+ G+ GE+G  G  G  G  G  G  G  G  G  G  GP G  G  G
Sbjct: 287 QPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSG 346

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G+ G  G  G  G+ G  G  G  G  G  G  G +G  G  G+DG PG  G  G  G
Sbjct: 347 PAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRG 406

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G KG TG  G  G+ G  G+ G  
Sbjct: 407 EAGAIGFPGPKGPTGEPGKPGEKGNVGLAGAR 438

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 1e-38
 Identities = 59/152 (38%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G+ G  G  G  G++G  G +G PG  G  G  G  G  G  GP G  G  G
Sbjct: 296 EEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNG 355

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  GP+G  G PG IG  G++G  G PG+DG PG  G  G  G+ G  G  G
Sbjct: 356 DSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPG 415

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G  G  G  G  G  G  G  
Sbjct: 416 PKGPTGEPGKPGEKGNVGLAGARGAPGPDGNN 447

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 1e-38
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP+G  G  G +G+ G  G  G  GA G  GPPGP G+ G  G  G  G  G  G
Sbjct: 680 AAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRG 739

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G+ G  G  G  G +G  G  G PG  G  G PG  G+ G PG  GLPG  G
Sbjct: 740 PRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRG 799

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  G PG  
Sbjct: 800 ERGLPGVAGSVGEPGPLGIAGPPGARGPPGNV 831

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 1e-38
 Identities = 66/152 (43%), Positives = 78/152 (51%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +GP+G  G  G  G +G  G RGE GA G  GP GP G PG  G++G  G  G  G
Sbjct: 380 PAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARG 439

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G +GP G  G  G  G  G  G PG  GL G  G  G  G PG+ GL G+ G
Sbjct: 440 APGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFG 499

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  GE+G  G RG  G +G  G  G  
Sbjct: 500 LPGPAGARGERGPPGERGAAGPTGPIGSRGPS 531

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 1e-38
 Identities = 57/152 (37%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G+ G  G  G +G  G  G  G PG  G  G  G+ G  G  GP+G  G  G
Sbjct: 194 PAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVG 253

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G  G  G  G  G  G+PG  G  G  G  G  G+ G  G  G
Sbjct: 254 AAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPG 313

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G+ G  G  G  G  G  GT 
Sbjct: 314 PPGLRGNPGSRGLPGADGVAGVMGPAGSRGTS 345

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G +G  G  G +G  G  G  G  G  G  G  GP G  G PG
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPG 727

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G EG RGP+GD G  GR G  G  G  G  G  G  G  G  G PG  G  G  G
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLG 787

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G  G  G  G  G  G  
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIA 819

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 2e-38
 Identities = 66/152 (43%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P GL GP G  G  G +G  G +G++G  G  G  G  GP G  G++G  G  G  G PG
Sbjct: 719 PSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPG 778

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  GL G  G  GEPG  GI G  G  G PG  G PG +G
Sbjct: 779 PPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNG 838

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +G  G  GP G  G+ G  G  GTP
Sbjct: 839 APGEAGRDGNPGNDGPPGRDGQPGHKGERGTP 870

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 2e-38
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G+ GE G  G+ G  GERG  G  G  G PG  G+PG +G RG  G  G  G
Sbjct: 50  ARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTG 109

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G+ G  G+ G PG+ G  G  G  G  G  G  G  G DG  G  G  G  G
Sbjct: 110 QPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIG 169

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G  
Sbjct: 170 SAGPPGFPGAPGPKGELGPVGNPGPAGPAGPR 201

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (391), Expect = 2e-38
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G IG  G  G  GE G  GE+G  G  G  G PGP G  G +G  G +G  G  G
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKG 463

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            QG  G  G +G  G  G  G  G  G  GL GE GL G  G  G  G PG+ G  G  G
Sbjct: 464 EQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTG 523

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G +G  G  G +G  G  G  G PG  
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPA 555

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 63/152 (41%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G QGP+G +G +GA G  G  G  G  G  G  GP G  G PG  G+ GP G  G  G
Sbjct: 665 PVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTG 724

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  GK G +G  G  G +G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 725 PPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQG 784

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G RG  G +G  G PG  
Sbjct: 785 LLGAPGFLGLPGSRGERGLPGVAGSVGEPGPL 816

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G +G +G+ G  G  G  G  GP G  G  G  G +GP G+ G PG
Sbjct: 368 PRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPG 427

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G RG  G  G  G  G  G  G+ GE G  G  G  G  G+PG  G  G+ G
Sbjct: 428 EKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAG 487

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G +GE G+ GP G RG+ G  G  G  
Sbjct: 488 KPGERGLHGEFGLPGPAGARGERGPPGERGAA 519

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 60/152 (39%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  GE G  G+ G  G  GV GP G +G PG  G  G KG  G+ G
Sbjct: 44  QTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNG 103

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  G KG+ G PG  G  G+ G  G PG  G  G  G  G  G DG  G  G
Sbjct: 104 LDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVG 163

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G+ G  G  G  G +G+ G  G PG  
Sbjct: 164 PAGPIGSAGPPGFPGAPGPKGELGPVGNPGPA 195

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G+ G+ G +G  G  G  G  GA G  GPPG +G  G  G  G +G  G PG
Sbjct: 476 LPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPG 535

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  GP G  G  G  G+ G  G+ G PG  G  G  G+ G  G  G  G  G
Sbjct: 536 PDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARG 595

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G RG  G +G  G  G  
Sbjct: 596 LPGAIGAPGPAGGAGDRGEGGPAGPAGPAGAR 627

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 62/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G KGE G KGE G  G+ G  G  G  G  G  G  G  G  GP G  G PG
Sbjct: 263 LVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPG 322

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+PG +G  G  G  G  G  G  G  G  G+ G  G PG  G  G PG  G  G  G
Sbjct: 323 SRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAG 382

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  G  G P
Sbjct: 383 KEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFP 414

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G +G  G  G  GE G  G PG  GPPG  G PG +G+RG  G+ G PG
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPG 877

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G  G+ G PG  G  G  G  G  G  G  G  G DG PG  G  G  G
Sbjct: 878 AVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKG 937

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G NG  G  G+ G  G++G  G  G  G  
Sbjct: 938 DRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPR 969

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP+G  G  G  G  G  G  G  G  G  G  GP G+PG +G  G  G  G PG
Sbjct: 182 PKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPG 241

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G  G +G  G  G  GE G  G PG  G  G PG  G  GK G
Sbjct: 242 LPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRG 301

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G RGN G  G+ G  G  
Sbjct: 302 STGEIGPAGPPGPPGLRGNPGSRGLPGADGVA 333

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 57/152 (37%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  GE G  G  G  G RG  G  G  G  G  G  G +G  G  G  G  G
Sbjct: 800 ERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDG 859

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G  G  G +G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 860 QPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQG 919

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G +G  G+KG  G +G+RG +G+ G+PG  
Sbjct: 920 IRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLA 951

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 64/152 (42%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPGL+G  G +G  GA G  GV G  G +G  G  G  GP G  G  G+ G  G  G+PG
Sbjct: 314 PPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPG 373

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  GK GP G  G  GR G  G  G  GE G  G PG  G  G PGK G  G  G
Sbjct: 374 SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVG 433

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G +G  G  G+ G  G  
Sbjct: 434 LAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQ 465

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
              G  G  G++G  G  G  G  G  G  G PG +G  G  G  G  G  G  G  G  G
Sbjct: 857  RDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSG 916

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            PQGI GD+G+ G KGD G  G  G +G  GLPG  G  G  G  G  G  G  G  G  G
Sbjct: 917  PQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSG 976

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
              G  G  G  G  G  G RG  G  G  G P
Sbjct: 977  PAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPP 1008

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 58/152 (38%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G+ G  G  G  G  G  G  G  G  G  G  G  G PG
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPG 364

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G  G +GL G DG PG  G  G  G  G  G PG  G  G+ G
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPG 424

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G +G  G PG  
Sbjct: 425 KPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQ 456

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 71/152 (46%), Positives = 80/152 (52%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G QGP+G+ GE GA G  G  GE+G  G PG  GPPGP G  G  G  G  G  G  G
Sbjct: 740 PRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRG 799

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+PG  G  G  G +G  G  G  G  G  G PG++G PG  G DG PG DG PG+DG
Sbjct: 800 ERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDG 859

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  G  G  G PG  
Sbjct: 860 QPGHKGERGTPGNAGPPGAVGPVGPVGEPGKL 891

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  154 bits (390), Expect = 2e-38
 Identities = 65/152 (42%), Positives = 75/152 (49%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G +G  G +G  G  G  GAPG  G  GP G PG  G  GP+G++G PG
Sbjct: 149 PAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPG 208

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G  G  GL G  G PG PG  GIPG  G  G  G  GL G+ G
Sbjct: 209 LSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPG 268

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G +G KG  G  G  G  G +G  G  
Sbjct: 269 PAGSKGESGNKGEPGAVGQPGPPGPSGEEGKR 300

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 2e-38
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  G  G  G  G  G+ G KG  G  GP G QG  G +G  G  G  G  G
Sbjct: 629 IRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVG 688

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G+PG  G  G  G  G  G  G PG  G +GI G  G  G  G
Sbjct: 689 AAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVG 748

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G +G  G+ G  G PG P
Sbjct: 749 RSGETGATGPTGFVGEKGPTGEPGSAGPPGPP 780

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 2e-38
 Identities = 61/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G +G  G  G  G  G  G PG  G PG +G+ G KG+ G PG
Sbjct: 812 EPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPG 871

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  GP G+ G  G  G  G  G  G  G  G  G +G  GI G DG PG  G
Sbjct: 872 NAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKG 931

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G  G  G  G  G PG  
Sbjct: 932 DKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAV 963

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 3e-38
 Identities = 62/152 (40%), Positives = 73/152 (48%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G++GP G  G  G  G MG +G  G  G  G  G  GP G+PG +G+ GP G  G  G
Sbjct: 347 PAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRG 406

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G +GP G+ G PG  G  G  G  G PG DG  G  G  G+ G  G  G+ G
Sbjct: 407 EAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQG 466

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  GK G  G+ G  
Sbjct: 467 PAGPPGFQGLPGPAGPAGEAGKPGERGLHGEF 498

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 3e-38
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PGL+G  G  G  GA+G  G  G  G  G  G  G  GP G  G  G RG +G+ G PG
Sbjct: 578 APGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPG 637

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 638 PVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRG 697

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G SG+ G PG P
Sbjct: 698 DAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPP 729

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 3e-38
 Identities = 58/150 (38%), Positives = 64/150 (42%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PPG  GP+G  GE G  G  G  G  G  G  G VGP GP G  G  G  G  GD G  G
Sbjct: 875  PPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKG 934

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             +G  G  G +G  G  G+ G  G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 935  IKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAG 994

Query: 231  IPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
            I G+ G+ G  G  GP G  G  G      
Sbjct: 995  IRGSQGSQGPAGPPGPPGPPGPPGPPSGGY 1024

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 3e-38
 Identities = 61/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  GE G+ G  G  G +G  GAPG +G PG +G  G  G  G  G+ G  G
Sbjct: 758 PTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLG 817

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G  G  G+ G  G  G  GRDG PG  G  G  G+ G  G  G  G  G  G
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPG 877

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G  G RG  G +G  G  G  
Sbjct: 878 AVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAV 909

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (389), Expect = 3e-38
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G++G  G +G  G  G  G  G  G+ G  G  G+ G  G  G KG+ G PG
Sbjct: 65  HPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPG 124

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G RG  G+ G  G  G  G  G  G  G  G  G  G  G PG  G PG  G
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKG 184

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GPRG  G  G++G  G P
Sbjct: 185 ELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPP 216

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 3e-38
 Identities = 61/152 (40%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +GP G  G+ G  G  G  G  GE+G PG  G  G  G PG  G +G +G  G  G
Sbjct: 47  PAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDG 106

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G +G  G  G  G  G  G  GLPGE G  G PG  G  G  G  G  G  G
Sbjct: 107 LTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAG 166

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G+ G  G  G  GP+G  G  G  G  G  
Sbjct: 167 PIGSAGPPGFPGAPGPKGELGPVGNPGPAGPA 198

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 3e-38
 Identities = 61/152 (40%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G+ G  G  G  G +G  G +GA G  G PG  G  G  G  G  G  G PG
Sbjct: 53  PPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPG 112

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G+ G  G  G  G  G  GL G  G  G PG  G  G +G  G  G  G  G  G
Sbjct: 113 APGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAG 172

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G KG  GP GN G +G  G  G  
Sbjct: 173 PPGFPGAPGPKGELGPVGNPGPAGPAGPRGEV 204

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 3e-38
 Identities = 59/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ GE G  G  G  G  G  G  G  GP G  GI G  G  GP G  G  G
Sbjct: 350 VRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAG 409

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G  G  G  G  G +GL G  G PG  G +G  G  G+ G+ G+ G  G  G
Sbjct: 410 AIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAG 469

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G+ G++G  G P
Sbjct: 470 PPGFQGLPGPAGPAGEAGKPGERGLHGEFGLP 501

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 3e-38
 Identities = 58/152 (38%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +G  G  G  G  G+ GE+G  G  G PGP G  G+ G  G +G  G  G
Sbjct: 464 EQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTG 523

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G+ G  G +G  G  G  G PG+ G  G  G+ G  G+ G PG  G
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRG 583

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G +G+ G  G  G +G  G  G  
Sbjct: 584 DTGATGRDGARGLPGAIGAPGPAGGAGDRGEG 615

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 3e-38
 Identities = 62/152 (40%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G++G  G+ G +G  G  G  G  G+ GA G  G  GP G  G  G +GP G  G PG
Sbjct: 626 ARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPG 685

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G RG  G  G  G  G  GR G PG  GL G PG  G  G  G  G  G  G
Sbjct: 686 PVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQG 745

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G TG  G +G +G  G  G P
Sbjct: 746 PVGRSGETGATGPTGFVGEKGPTGEPGSAGPP 777

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 4e-38
 Identities = 58/152 (38%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  G  GE G  G PG  G  G  G  G  G  G  G  G+ G
Sbjct: 38  EPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKG 97

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G +G  G  G  G  G  G  G +G PG+ G  G+PG  G  G PG  G  G DG
Sbjct: 98  IRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDG 157

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G  G  G  G  
Sbjct: 158 SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPV 189

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 4e-38
 Identities = 57/152 (37%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G +G  G  G  G+ G +G +G  G+ G  G  G PG +G+ G  G+ G PG
Sbjct: 71  RPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPG 130

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G+RG  G  G  G  G DG  G  G  G  G  G  G  G PG  G  G  G
Sbjct: 131 QKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVG 190

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G +G  G  G  G  G  G  G  
Sbjct: 191 NPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPN 222

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  153 bits (388), Expect = 4e-38
 Identities = 64/152 (42%), Positives = 76/152 (50%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G++GP G +G +G  GE G  G  G  G  G  G PG  G PG  G +G  G  G+ G
Sbjct: 734 KEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLG 793

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G +G PG +G+ G  G  G PG  G PG NG  G  G+DG PG DG
Sbjct: 794 LPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDG 853

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G  G KG  G  GN G  G  G  G  
Sbjct: 854 PPGRDGQPGHKGERGTPGNAGPPGAVGPVGPV 885

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 4e-38
 Identities = 62/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G MG  G RG  G  GV GP G  G PG+ G  GP+G  G PG
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G EG  G  G  G PG IG  G  G  G  G  G  G  G  G PG+ G  G  G
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAG 436

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  GP G +G  G  G  G  
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPA 468

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 4e-38
 Identities = 65/152 (42%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G  GE G  GE G  G PG  GP G  G PG  G  G +G+ G PG
Sbjct: 746 PVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPG 805

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G  G  G  G  G  G+ G PG  G  G  G DG PG+DG PG  G
Sbjct: 806 VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKG 865

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             GT G  G  G  GP G  G+ G  G  G P
Sbjct: 866 ERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEP 897

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 5e-38
 Identities = 59/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  G  G  G RG  GA G  GP G  G  G+ G  GP G  G  G
Sbjct: 569 VPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARG 628

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G+ G  GP G  G  G  G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 629 IRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVG 688

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G TG  G  G +G  G PG  
Sbjct: 689 AAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPS 720

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 5e-38
 Identities = 66/152 (43%), Positives = 72/152 (47%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G +G RG +G  G VG  G  G  G  G  G KG  G PG
Sbjct: 713 RTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPG 772

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G +G  G  G+ G  G  G  GLPG  G  G PG  G+ G PG  G PG  G
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVG 832

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG NG  GE G  G  GN G  G +G PG  
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHK 864

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 5e-38
 Identities = 58/152 (38%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  GA G+ G++G RG++G  G  G  G  G  G  G++GP G+ G  G
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAG 775

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG +G  G  G +G PG  G  G  G+ G  G  G  G  G  G  G  G  G  G
Sbjct: 776 PPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPG 835

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G  G  G+ G  G  G  
Sbjct: 836 VNGAPGEAGRDGNPGNDGPPGRDGQPGHKGER 867

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 5e-38
 Identities = 67/152 (44%), Positives = 71/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G  G  GA G+ G KGERG KG  G  GP GPQG  G  G  GP G  G  G
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAG 694

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P+G  G  G  G  G  G  G  G  G  G PG PG  G  G  G  G  G  G  G+ G
Sbjct: 695 PRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETG 754

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GEKG TG  G+ G  G  G  G  
Sbjct: 755 ATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLL 786

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 5e-38
 Identities = 60/152 (39%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G+ GA G  G  G  GE G PG  G  G  G  G  G  GP G  G  G
Sbjct: 98  IRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDG 157

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G+PG  G  G  G  G PG  G  G  G  G+PG  G  G  G
Sbjct: 158 SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPG 217

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G NG  G KG  G  G  G  G+ G  G P
Sbjct: 218 NAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIP 249

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (387), Expect = 5e-38
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G +GE G +G  G  G +G  G  G  G  G  G  G  G+ G  G  G  G
Sbjct: 449 AQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARG 508

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG+ G  GP G +G  G  G  G DG  GE G  G  G  G  G PG  G  G  G
Sbjct: 509 ERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAG 568

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G+ G  G  G+ G  G+PG  
Sbjct: 569 VPGGKGEKGAPGLRGDTGATGRDGARGLPGAI 600

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (386), Expect = 6e-38
 Identities = 56/152 (36%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G  G  G  G  G  G  G+ G PG  G  G +G  G+ G  GP G  G  G
Sbjct: 260 ARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRG 319

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G MG  G  G  G  G+ G  G  G PG  G+ G  G  G PG  G
Sbjct: 320 NPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIG 379

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G  G  G +G  G  G  
Sbjct: 380 PAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAI 411

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (386), Expect = 6e-38
 Identities = 57/152 (37%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G +G+ GA G  G +G  G  GAPG  G  G +G  G  G  GP G  G  G
Sbjct: 572 GKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRG 631

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  G  G  G  G+ G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 632 ERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAG 691

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  GMTG  G  G++G  G  G  
Sbjct: 692 PAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLT 723

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (386), Expect = 7e-38
 Identities = 57/152 (37%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G+ G  G  G  G  G +G  G  G PGP G  G  G  G  G  G  G
Sbjct: 599 AIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKG 658

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G++GP G  G  G  G  G  G  G  G  G  G  GM G PG  G  G  G
Sbjct: 659 ERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPG 718

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G RG  G  G  G  
Sbjct: 719 PSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRS 750

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (386), Expect = 7e-38
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G++G  G  G  G  G  GVKGE G  G  G  G  G +G+PG+ G+ G  G  G  G
Sbjct: 95  FKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARG 154

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G PG  G  G  G  G  G  G  G  G  G  G  GL G  G
Sbjct: 155 SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVG 214

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G NG  G  G  G  G +G  G+PG  
Sbjct: 215 PPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPR 246

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (386), Expect = 7e-38
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             GL G  G++G  G  G +G  G  G  G PG  GPPG  G PG  G  G  G  G PG
Sbjct: 791 FLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPG 850

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG +G+ G KG+ G PG  G  G  G  G  G  G  G  G  G  G  G  G  G
Sbjct: 851 NDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVG 910

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G +G  G  G++G  GI G  G  
Sbjct: 911 PRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHN 942

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 7e-38
 Identities = 59/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G +G  G  G  G  G  G PG  GP G  G  G+ G  GP G  G  G
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVG 205

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  G  G  G PG  G  G  G+ G PGL G  G  G  G  G  G  G  G
Sbjct: 206 LPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVG 265

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G+ GE G  G  G  G+ G  G  G  
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEE 297

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 8e-38
 Identities = 61/152 (40%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  G  G  G  G  G++G  G  G  GP G  G+ G  GP G +G  G
Sbjct: 707 FPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKG 766

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G  GP G  G  G  G  G  G  GE GL G+ G  G  G  G  G PG  G
Sbjct: 767 PTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARG 826

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G +G PG  
Sbjct: 827 PPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRD 858

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 8e-38
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G+ GP G +G  G  G  G KG RG  G  G+ G PG  G+ G+ G  G  G  G  G
Sbjct: 74  ERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKG 133

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G+PG+ G+ G  G  G  G  G  G  G  G  G  G PG  G  G  G+ G  G  G
Sbjct: 134 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPG 193

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  GE G+ G  G  G  G  G  G P
Sbjct: 194 PAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLP 225

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 8e-38
 Identities = 58/152 (38%), Positives = 61/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +G  G  GE G  G  G  G  G  G  G  GP GP+G  G  G  G  G  G  G
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTG 715

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G  G  G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAG 775

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  G  G  G  G  G+PG  
Sbjct: 776 PPGPPGPQGLLGAPGFLGLPGSRGERGLPGVA 807

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 9e-38
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G +G  G  GE G+ G  G  GPPGP G  G++G  G  G  G  G
Sbjct: 17  PRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERG 76

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G  G  G+ G  G +G DGL G+PG  G+ G  G  G  G  G  G  G
Sbjct: 77  VPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARG 136

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G  G  G  G RG+ G  G  G  G  
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPI 168

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 9e-38
 Identities = 60/152 (39%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G  G  G  G  G  G PG  G  GP G  G  G  GP G  G  G
Sbjct: 677 PVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEG 736

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  GD+G  G  G+ G  G  G  G  G  GEPG  G PG  G  G+ G  G  G  G
Sbjct: 737 IRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPG 796

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G  G  G P
Sbjct: 797 SRGERGLPGVAGSVGEPGPLGIAGPPGARGPP 828

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  152 bits (385), Expect = 9e-38
 Identities = 61/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  GA+G  G  G  G +G PG+ G  G +G  G  G  G +G  G  G
Sbjct: 422 EPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAG 481

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G+RG  G+ G PG  G  G  G PGE G  G  G  G  G  G  G  G  G
Sbjct: 482 PAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKG 541

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G  G+ G+ GVPG  
Sbjct: 542 EAGAVGPAGAPGPAGPPGIPGERGVAGVPGGK 573

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 60/152 (39%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG QG +G  G +G  G  G +G  G  G+ G  GP G  G PG  G  G  G+ G  G
Sbjct: 779 PPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNG 838

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G +G  G  G  G  G+ G  G  G PG  G  G  G  G  G PGK G  G+ G
Sbjct: 839 APGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPG 898

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G +G  G +G PG  
Sbjct: 899 PAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDK 930

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 56/152 (36%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  G  G  G  GP G PG  G  G  G+ G  G
Sbjct: 509 ERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAG 568

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G++G  G +GD G  GR G  G  G  G PG  G  G  G  G  G  G  G  G
Sbjct: 569 VPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARG 628

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G  G  G  G +G  G  G +G  G  G  
Sbjct: 629 IRGERGEPGPVGPSGFAGPAGAAGQPGAKGER 660

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G +G  G +G RG  G PG+ G  G +G  G +G  G  G  G  G
Sbjct: 59  KAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKG 118

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  G KG  G PG  G  G  G  G  G DG  G  G  G  G  G PG  G
Sbjct: 119 EPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG 178

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G  G  GP G  G  G  G+PG  
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLS 210

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G IG  G+ G  G  G+ G  G  G  G  G  G  G PG +G  G  G  G  G
Sbjct: 371 FPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKG 430

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G  GP G+ G  G  GL G  G  GE G  G PG  G+ G  G  G  GK G
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPG 490

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  G RG RG  G  G  G  
Sbjct: 491 ERGLHGEFGLPGPAGARGERGPPGERGAAGPT 522

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 60/152 (39%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  GP G +G  G  G+ G  G  G+ G PG  G PGPQG  G  G  G  G  G  G
Sbjct: 41  EPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRG 100

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G+ G  G+ G  G  G PG  G +G  G  G  GL G  GR G  G  G  G  G  G
Sbjct: 101 HNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVG 160

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G  G  G P
Sbjct: 161 PVGPAGPIGSAGPPGFPGAPGPKGELGPVGNP 192

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ G  G  G  G  G  G  G  G+ GP G QG  G  G+ G  G  G+ G
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVG 763

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G+ G  GP G  G  G +G  G  GLPG  G  G+PG  G  G PG  G+ G  G
Sbjct: 764 EKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPG 823

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G  G  G+ G  G  G P
Sbjct: 824 ARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPP 855

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (384), Expect = 1e-37
 Identities = 59/153 (38%), Positives = 69/153 (45%)

Query: 110 CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
            P G  G  G+ GE G  G  G +G  G  G  G  GPPG QG+ G++G++GP G  G+ 
Sbjct: 415 GPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQ 474

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           G  G  G  G+ G  G+ G  G  GL G  G  GE G  G  G  G  G  G  G  G  
Sbjct: 475 GLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPP 534

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G  G  G  G  G  G  G  G  GI G  G  
Sbjct: 535 GPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVA 567

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (383), Expect = 1e-37
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G  G  G +G  G  G  G  G  G  G PG  G RG  G  G  G
Sbjct: 320 NPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIG 379

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G  G  G  G  G  G PG  G  G  G  G  G  GL G  G
Sbjct: 380 PAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARG 439

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG +G NG +G  G +G +G+ G  G  G P
Sbjct: 440 APGPDGNNGAQGPPGLQGVQGEKGEQGPAGPP 471

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (383), Expect = 1e-37
 Identities = 58/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G +G  G  GA GE G  G  G  G PG  G PG +G  G  G  GP G +G  G
Sbjct: 824 ARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVG 883

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G PG  G RG  G  G  G  G  G  G  G  G+ G  G  G  G  G  G  G +G
Sbjct: 884 PVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNG 943

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G  G  G  G  G  G  G +G  G  G  
Sbjct: 944 LQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPS 975

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (383), Expect = 1e-37
 Identities = 56/152 (36%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G  G  G  G+ GE G  G  G  GA G  G  G  G+ G  G+ G  G+ G  G
Sbjct: 794 LPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDG 853

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G +G +G  G  G  G  G  G  GEPG  G  G  G  G  G  G  G  G
Sbjct: 854 PPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRG 913

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G  G +G++G  G  G  G  
Sbjct: 914 PSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQ 945

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 55/152 (36%), Positives = 59/152 (38%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G+ G  G  G  G  G  G  G  G  G  G +G  G  G
Sbjct: 575 EKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERG 634

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G  G PG  G  G  G  GE G  G  G  G  G PG  G  G  G
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAG 694

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G  G +G+ G P
Sbjct: 695 PRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPP 726

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 63/152 (41%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG+ G  G+ G  G  G  G  G  G+ G  G  G PG  G PG  G  GP G+ G  G
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLG 892

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG  G  GP G +G  G  G  G  G  GEPG  G  G  G  G  G  GLPG  G
Sbjct: 893 NRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAG 952

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GPRG  G SG  G  G  
Sbjct: 953 HHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRI 984

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 58/152 (38%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G+ G  G  G PG  G  G  G+ G  G+ GP G  G PG
Sbjct: 764 EKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPG 823

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG+ G  G  G  G  GR G  G DG PG  G  G  G  G  G  G  G  G  G
Sbjct: 824 ARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVG 883

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G  GP G  G +G  G  G  
Sbjct: 884 PVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPS 915

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G +GP G+ G  G  G  G +G  G  G  G+ G  G +G+PG  G  G  G +G  G
Sbjct: 761 FVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAG 820

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G  G PG  G DG  G  G PG DG PG  G  G PG  G PG  G
Sbjct: 821 PPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVG 880

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G+ G  G  G  G  G  G  G  
Sbjct: 881 PVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPR 912

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 56/152 (36%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G +GE G  G  G  GE G  G  G  G  GP G  G+ G  G  G+ G  G
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDG 847

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G  G  G  G  G  G  G  G  G  G PG+ G  G PG  G  G  G
Sbjct: 848 NPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAG 907

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G +G+ G  G  G  G  G+ G  
Sbjct: 908 AVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDR 939

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 58/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG +G +G  G  GA G  G  G +G  G  GV G  G QG  G  G +G  G  G  G
Sbjct: 425 KPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAG 484

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG+ G  G  G  G  G  G  G  G  G  G  G  G  G  G PG DG  G+ G
Sbjct: 485 EAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAG 544

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G RG +G+ G  G  
Sbjct: 545 AVGPAGAPGPAGPPGIPGERGVAGVPGGKGEK 576

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  151 bits (382), Expect = 2e-37
 Identities = 58/152 (38%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           PPG  G  G  G  G  G  G  G  G  G  G  G  G +G PG+ G  G  G +G  G
Sbjct: 827 PPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVG 886

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G+ GP G +G  G +G  G  G  G  G DG PG  G  GI G  G  G  G
Sbjct: 887 EPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQG 946

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           +PG  G +G++G  G  G  G  G  G  G  
Sbjct: 947 LPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPA 978

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (381), Expect = 2e-37
 Identities = 60/152 (39%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G +G  G  G  G KG  G  G  G  G PG  G  G  G PG+ G  G KG  G PG
Sbjct: 80  PQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPG 139

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G  G  G  G +G  G  G +G  G  G  G PG  G PG  G  G  G  G  G  G
Sbjct: 140 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAG 199

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP GN G +G+ G  G  
Sbjct: 200 PRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAA 231

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (381), Expect = 2e-37
 Identities = 59/152 (38%), Positives = 64/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            PG  G  G  G  GA+G  G  G  G KG  G  G  G  G PG  G +G  G  G  G
Sbjct: 68  KPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENG 127

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  G +G +G PG  G  G DG  G  G  G  G  G  G PG  G  G+ G
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELG 187

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G SG  G PG  
Sbjct: 188 PVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNA 219

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (381), Expect = 2e-37
 Identities = 58/152 (38%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G+ GP G +G  G  G  GV G  GE G  G  G  GP G  G  G +G +G  G  G
Sbjct: 815 PLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAG 874

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  G  G +G  G  G  G  G  G  G  G  G  G+ G  G+ G  G  G
Sbjct: 875 PPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKG 934

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G  G NG +G+ G  G+ G  G  G  G  
Sbjct: 935 IKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPA 966

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (381), Expect = 2e-37
 Identities = 58/152 (38%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G+ G +G  G +G  G  G  G  GP G  G  G  G+ G  G  G PG
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPG 781

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           PQG+ G  G  G  G  G  G  G+ G  G PG  G+ G PG  G  G  G  G+ G  G
Sbjct: 782 PQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPG 841

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G +G  G  G  G  G  G  G  G PG  
Sbjct: 842 EAGRDGNPGNDGPPGRDGQPGHKGERGTPGNA 873

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (381), Expect = 3e-37
 Identities = 59/152 (38%), Positives = 66/152 (43%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  G PG  G  G +G  GD+G  G  G+ G  G
Sbjct: 698 DAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATG 757

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G++G  G  G  G PG  G  G  G PG  GL G  G  G+ G+ G  G PG  G
Sbjct: 758 PTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLG 817

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           I G  G  G  G  G  G  G  G  G  G P
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGRDGNP 849

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (380), Expect = 3e-37
 Identities = 62/152 (40%), Positives = 70/152 (46%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P GL G  G  G  G++GE G+ G  G  G PG +G  GP G  G  G  G  G  G PG
Sbjct: 782 PQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPG 841

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  GP G  G PG  G  G  G  G PG  G  G  G  G  G  G PG  G
Sbjct: 842 EAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAG 901

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G +G +GP+G RG  G  G  G  
Sbjct: 902 AVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDK 933

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (380), Expect = 3e-37
 Identities = 57/152 (37%), Positives = 67/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  GE G  G  G  G  G  G PG  G  G  G  G  G  GP G +G PG
Sbjct: 830 NVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPG 889

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G+ G  G  G  G  G  G  G  G+ G+ G  G  G  G+ G  G +GL G  G
Sbjct: 890 KLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPG 949

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           + G +G  G  G  GP G RG +G +G  G  
Sbjct: 950 LAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKI 981

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (380), Expect = 3e-37
 Identities = 57/152 (37%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G+ GE G  G  G +G  G  G PG  G  G  G+ G  G+ G  G  G PG
Sbjct: 62  EDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPG 121

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G++G +G  G  GR+G  G  G  G  G  G  G  G  G  G  G PG  G
Sbjct: 122 APGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPG 181

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  GP G RG+ G+ G+ G  
Sbjct: 182 PKGELGPVGNPGPAGPAGPRGEVGLPGLSGPV 213

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  150 bits (380), Expect = 3e-37
 Identities = 60/152 (39%), Positives = 68/152 (44%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G +G  G+ G  G+ GAPGV G PG  G  G  G++G +G  G  G
Sbjct: 83  ARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERG 142

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G PG  G RG  G +G  G  G  G  G PG PG  G  G  G  G PG  G  G  G
Sbjct: 143 RVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRG 202

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G +G  G  G  G  G  G  G  G P
Sbjct: 203 EVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLP 234

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  149 bits (379), Expect = 5e-37
 Identities = 58/155 (37%), Positives = 69/155 (44%)

Query: 108 EYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMG 167
           +  P G+ G  G  G  G  G  G+ G  G  GA G  G  GP+G  G  G+ G  G  G
Sbjct: 698 DAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATG 757

Query: 168 YPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
             G  G  G  G+ G  G  G PG  GL G  G  G PG  G  G  G+ G  G+ G  G
Sbjct: 758 PTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLG 817

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G PG  G  G  G  G  G  G++G +G PG  
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGND 852

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  149 bits (378), Expect = 6e-37
 Identities = 57/152 (37%), Positives = 63/152 (41%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G +G  G  G  G  G  G +G PG  G  GP G  G  G  G  G  G  G
Sbjct: 341 SRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIG 400

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G+ G  G  G  G  G  G  G  G  G  G  G PG +G +G  G  GL G  G
Sbjct: 401 PAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQG 460

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G  G  G  G +G  G PG  
Sbjct: 461 EKGEQGPAGPPGFQGLPGPAGPAGEAGKPGER 492

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  148 bits (375), Expect = 1e-36
 Identities = 57/152 (37%), Positives = 69/152 (45%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP+G  G  GA+G  G  G  G  GAPG  G  G  G  G  G+ G  G  G  G
Sbjct: 809 SVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 868

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G  GP G +G PG++G  G  G  G  G  G  G  G  G  G  G  G+ G
Sbjct: 869 TPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPG 928

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G++G  G +G  G +G +G  G P
Sbjct: 929 DKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAP 960

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  148 bits (375), Expect = 1e-36
 Identities = 56/152 (36%), Positives = 65/152 (42%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G  G  G  G  G  G  G  G  G  G  G  G PG++G  G  G  G+ G
Sbjct: 806 VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKG 865

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
            +G PG+ G  G  G +G  G  G  G  G PG  G  G  G  G  G  G  G+ G DG
Sbjct: 866 ERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDG 925

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
            PG  G  G KG  G  G +G  G+ G  G  
Sbjct: 926 EPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQ 957

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  147 bits (373), Expect = 2e-36
 Identities = 55/152 (36%), Positives = 62/152 (40%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  G  G +G  G  G  G +G  G +G  G  G  GP G PG +G  GP G  G  G
Sbjct: 428 EKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAG 487

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             G  G  G+ G  G  G  G  G  G  G  G  G  G  G +G  G  G  G  G  G
Sbjct: 488 KPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVG 547

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
             G  G  G  G+ G RG  G  G  G  G P
Sbjct: 548 PAGAPGPAGPPGIPGERGVAGVPGGKGEKGAP 579

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score =  140 bits (355), Expect = 3e-34
 Identities = 52/130 (40%), Positives = 61/130 (46%)

Query: 111  PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             PG  G +G  G +G +G  G +G RG+ G PG  G  G +G  G  G +G  G  G+ G
Sbjct: 896  EPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHG 955

Query: 171  PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
             QG PG  G  GP+G  G  G  G  GR G  G  G  GI G  G  G  G  G PG  G
Sbjct: 956  DQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPG 1015

Query: 231  IPGTNGTNGE 240
             PG      E
Sbjct: 1016 PPGPPSGGYE 1025

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 25/56 (44%), Positives = 29/56 (51%)

Query: 110  CPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGD 165
             P G  GP G+ G IGA G  G  G RG +G+ G  GPPGP G PG  G      +
Sbjct: 970  GPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGGYE 1025

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  126 bits (317), Expect = 3e-32
 Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 26/205 (12%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
             T  + I   ++        +P   +EG++  + C       P+IIWK      I    
Sbjct: 90  EATVNVKIFQKLMFKNA---PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVG- 380
            +   ++++ L    I + + G Y C                    VPP +  R   V  
Sbjct: 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNA 206

Query: 381 -VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV 439
              +G++ TL C+ + FP     W      +   +         D  S     +L I NV
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS-----ELTIRNV 261

Query: 440 NISDFDTYRCISKNEVDIAKGSLIL 464
           + +D   Y CI++N+      S+ L
Sbjct: 262 DKNDEAEYVCIAENKAGEQDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 94.9 bits (236), Expect = 1e-21
 Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 30/182 (16%)

Query: 296 FSSSP--IVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLG----SWKDSAVASSTL 348
               P    +  G++    C   G  K   I W +   + ++      S   +   SSTL
Sbjct: 5   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 349 NFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEV 393
                N  + G Y C+                                  G  A + C+V
Sbjct: 65  TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124

Query: 394 EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
            +       W+     +I    V++ +  +          L I  +  +D  TYRC  + 
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKDVRFIV--LSNNY------LQIRGIKKTDEGTYRCEGRI 176

Query: 454 EV 455
             
Sbjct: 177 LA 178

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSY 428
            Q+ I   +  + +G +    C+V          W   +G  +  +  + S+   D  S 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEV 455
                L I N NI D   Y+C+   E 
Sbjct: 63  ----TLTIYNANIDDAGIYKCVVTAED 85

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  116 bits (292), Expect = 9e-30
 Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 26/185 (14%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWK---------TSENKPITLGSWKDSAVASST 347
           S   + + E + V+L C  +G   P + WK            N  IT           + 
Sbjct: 10  SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69

Query: 348 LNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLEC 391
           + F  + R + G Y C+                   VPP     N      IG  A L C
Sbjct: 70  ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTC 129

Query: 392 -EVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450
            E +  P S   W      +  +     + S+          +L    ++ SD   Y C 
Sbjct: 130 SEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189

Query: 451 SKNEV 455
           ++N  
Sbjct: 190 ARNGY 194

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
              +      V +P      L C    F      W+F  G           I+   +   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 429 QYIMQ-LNISNVNISDFDTYRCISKNEVDIAKGS 461
            ++   +   +V   D  TY C+   E   + G 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE 97

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  108 bits (270), Expect = 9e-27
 Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA---------VASST 347
           + S + V E ++++L C  +G   P + WK  +     L  +              +SS 
Sbjct: 7   AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66

Query: 348 LNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLEC 391
           + F+ + R + G Y C+                   VPP     +    V IG  A L C
Sbjct: 67  ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTC 126

Query: 392 -EVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ-YIMQLNISNVNISDFDTYRC 449
            E +  P S   W     +++  D  K         +       L    V   D   Y C
Sbjct: 127 SEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC 186

Query: 450 ISKNEVDIAKGSLIL 464
            ++N    A  S   
Sbjct: 187 QAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
             +      V VP   +  L C    F      W+F+ G+      V Y+       + +
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTA--LVCYNSQITAPYADR 59

Query: 430 YIMQ---LNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQEEVTV 484
                  +  S+V   D   Y C+   E   +  + S+ L         PT      VT+
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL-TVLVPPSKPTISVPSSVTI 118

Query: 485 YNRA 488
            NRA
Sbjct: 119 GNRA 122

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  104 bits (262), Expect = 6e-26
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 27/184 (14%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           SP   ++G++  + C  +  P P++ W     +  T+   + + +A++ L    IN+ + 
Sbjct: 10  SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69

Query: 359 GAYMCLADN----------------VPPQILIRNRR--VGVPIGRTATLECEVEAFPLSV 400
           G Y C                    VPP I +  +        G   T  C     P   
Sbjct: 70  GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129

Query: 401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG 460
             W   +G LIE +  KY +             L + N+  SD   Y C + N+    + 
Sbjct: 130 ISWFR-NGKLIEENE-KYILKG-SNTE------LTVRNIINSDGGPYVCRATNKAGEDEK 180

Query: 461 SLIL 464
              L
Sbjct: 181 QAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
                          G  A + C V + P     W + +  +      ++++  +   + 
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM--LANNN- 58

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEV 455
                L I N+N SD   YRC  + E 
Sbjct: 59  -----LQILNINKSDEGIYRCEGRVEA 80

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  100 bits (252), Expect = 1e-24
 Identities = 42/190 (22%), Positives = 63/190 (33%), Gaps = 32/190 (16%)

Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS 341
           +L   P I     +     +     +     C    +P+P I W T     I L   + S
Sbjct: 3   KLPKAPVIT--TPL---ETVDALVEEVATFMCAVESYPQPEISW-TRNKILIKLFDTRYS 56

Query: 342 AVAS-STLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGR 385
              +   L    +   + G Y C A+N               + P+I      V +  G 
Sbjct: 57  IRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGL 116

Query: 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
            A L C     P     W   D  L E+  +      ++ GS      L I NV   D  
Sbjct: 117 KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV----LESGS------LRIHNVQKEDAG 166

Query: 446 TYRCISKNEV 455
            YRC++KN +
Sbjct: 167 QYRCVAKNSL 176

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 99.8 bits (249), Expect = 4e-24
 Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 31/188 (16%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS----TLNFTRIN 354
             +VV EG         +G P P + W   + + I+  +     ++ S     L    + 
Sbjct: 13  QSVVVLEGSTATFEAHISGFPVPEVSW-FRDGQVISTSTLPGVQISFSDGRAKLTIPAVT 71

Query: 355 RINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVEAFP 397
           + N G Y   A N                  PP  + R + + V  G    L+  V   P
Sbjct: 72  KANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131

Query: 398 LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV-- 455
             V  +   DG  I+     + IS            L I+     D  TY   + N V  
Sbjct: 132 TPVVKFYR-DGAEIQSSL-DFQISQEGDLYS-----LLIAEAYPEDSGTYSVNATNSVGR 184

Query: 456 DIAKGSLI 463
             +   L+
Sbjct: 185 ATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P      + V V  G TAT E  +  FP+    W F DG +I    +         G  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSW-FRDGQVISTSTLPGVQISFSDGRA 63

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
               +L I  V  ++   Y   + N    A  +  L
Sbjct: 64  ----KLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  101 bits (254), Expect = 7e-24
 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 25/188 (13%)

Query: 297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR 355
            +  +VV E  +  L C+ T    +  +       +P+   +   S          R   
Sbjct: 95  LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT-NYSFSPWHGFTIHRAKF 153

Query: 356 INMGAYMCLADN-------------------VPPQILIRNRRVGVPIGRTATLECEVEAF 396
           I    Y C A                      PP + +    +    G  A + C   + 
Sbjct: 154 IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV 213

Query: 397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456
            ++   +   + T +         SD     YQ ++ LN+  V+      Y C++ N   
Sbjct: 214 DVNFDVFLQHNNTKLAIP----QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG 269

Query: 457 IAKGSLIL 464
               S+  
Sbjct: 270 KHSTSMFF 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 78.9 bits (194), Expect = 5e-16
 Identities = 40/217 (18%), Positives = 56/217 (25%), Gaps = 40/217 (18%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P I  S        +VV+ G  V LRCV  G    S+ W    +   TL S       S
Sbjct: 4   IPVIEPS-----VPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGS----S 50

Query: 346 STLNFTRINRINMGAYMCLADN--------------VPPQILIR-NRRVGVPIGRTATLE 390
           S L+       N G Y C                   P +      + V V   + A L 
Sbjct: 51  SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110

Query: 391 CEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
           C +    L        + G  +       + S              I          Y+C
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHT---NYSFSPWHG------FTIHRAKFIQSQDYQC 161

Query: 450 I-SKNEVDIAKGSLILFESNAKTPVPT-EKEQEEVTV 484
                   +   S+ L         P       E+  
Sbjct: 162 SALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVR 198

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 24/128 (18%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
             P I      + V  G T TL C       SV  W+             +++      S
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNG---SVE-WDG-------PPSPHWTLYSDGSSS 51

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNR 487
                 L+ +N    +  TYRC    +      ++ L+  +     P     +EV V+  
Sbjct: 52  -----ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP--ARPWNVLAQEVVVF-- 102

Query: 488 APKPEGQD 495
               E QD
Sbjct: 103 ----EDQD 106

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  101 bits (253), Expect = 1e-23
 Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAV 343
           PP  +           +V++ ++ R  C   G P+  ++W   +   I   S        
Sbjct: 98  PPRFIKKLE----PSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVE 152

Query: 344 ASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATL 389
           + + L    ++  + G Y C A N               PP    +   V    G    L
Sbjct: 153 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHL 212

Query: 390 ECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
           ECE++  P     W   D   +     KY I   +  +      ++I NV+ +D   Y+C
Sbjct: 213 ECELQGTPPFQVSW-HKDKRELRSGK-KYKIMSENFLT-----SIHILNVDSADIGEYQC 265

Query: 450 ISKNEVDIAKGSLIL 464
            + N+V        +
Sbjct: 266 KASNDVGSYTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 93.7 bits (233), Expect = 3e-21
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 32/199 (16%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV 343
           + PP             + +  G++   +C  TG     I W   +N+ I  G      +
Sbjct: 3   MAPPFFDLK-----PVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTL 56

Query: 344 A--SSTLNFTRINRINMGAYMCLADN--------------VPPQILIR-NRRVGVPIGRT 386
              ++TL   ++ + + G Y C A N               PP+ + +      V     
Sbjct: 57  VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 116

Query: 387 ATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
              EC++   P   V  W + D T I+                     L + N+++ D  
Sbjct: 117 TRYECKIGGSPEIKVL-W-YKDETEIQESSKFRMSFVESVAV------LEMYNLSVEDSG 168

Query: 446 TYRCISKNEVDIAKGSLIL 464
            Y C + N    A  S  L
Sbjct: 169 DYTCEAHNAAGSASSSTSL 187

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 98.4 bits (245), Expect = 2e-23
 Identities = 40/202 (19%), Positives = 60/202 (29%), Gaps = 37/202 (18%)

Query: 279 ETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW 338
           ET +   PP                  G      C ATG P+P I+W   + K ++   +
Sbjct: 1   ETGE--TPPRFT--RTP---VDQTGVSGGVASFICQATGDPRPKIVW-NKKGKKVSNQRF 52

Query: 339 KDSAVASSTLNFTRINRIN----MGAYMCLADN---------------------VPPQIL 373
           +       + +  RI  +        Y C+A N                       P I 
Sbjct: 53  EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112

Query: 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433
           +  +   V   RTAT+ C     P     W   D   ++       I  +   S      
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSESIG---A 168

Query: 434 LNISNVNISDFDTYRCISKNEV 455
           L I     SD   Y C++ N  
Sbjct: 169 LQIEQSEESDQGKYECVATNSA 190

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  102 bits (256), Expect = 3e-23
 Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 25/193 (12%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           P        +   S ++  EG +  L C  +G+P PS  W     + I L S K S +  
Sbjct: 216 PGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW-LRGEEVIQLRSKKYSLLGG 274

Query: 346 STLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLEC 391
           S L  + +   + G Y C+                 VPP  L     +          EC
Sbjct: 275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFEC 334

Query: 392 EVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451
            V   P+    W   +G ++      + I  V   +      L I  V  SD   Y+C++
Sbjct: 335 AVSGKPVPTVNW-MKNGDVVIPSD-YFQI--VGGSN------LRILGVVKSDEGFYQCVA 384

Query: 452 KNEVDIAKGSLIL 464
           +NE   A+ S  L
Sbjct: 385 ENEAGNAQSSAQL 397

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 47/194 (24%), Positives = 66/194 (34%), Gaps = 35/194 (18%)

Query: 296 FSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD--SAVASSTLNFT 351
           F S    I    GD V L+C   G P P+I W+    + +           + S  L  +
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDSRVVVLPSGALQIS 182

Query: 352 RINRINMGAYMCLADN---------------------VPPQILIRNRRVGVPIGRTATLE 390
           R+   + G Y C A N                          L R   V    G+ A LE
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242

Query: 391 CEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450
           C V  +P     W      +I+    KYS+  +   +      L ISNV   D  TY C+
Sbjct: 243 CCVSGYPPPSFTWLR-GEEVIQLRSKKYSL--LGGSN------LLISNVTDDDSGTYTCV 293

Query: 451 SKNEVDIAKGSLIL 464
              + +    S  L
Sbjct: 294 VTYKNENISASAEL 307

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 36/193 (18%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGS------W 338
                    +   S  V   G NV L C A      P I WK  +   + LG        
Sbjct: 21  SLHF-----VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALGMDDRKQQL 74

Query: 339 KDSAVASSTLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVP 382
            + ++    +  +R ++ + G Y C A                   P + L +   +   
Sbjct: 75  PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAF 134

Query: 383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS 442
           +G T  L+CEV   P+   +W+  +   +        +  +  G+      L IS +   
Sbjct: 135 MGDTVLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDSRVVVLPSGA------LQISRLQPG 187

Query: 443 DFDTYRCISKNEV 455
           D   YRC ++N  
Sbjct: 188 DSGVYRCSARNPA 200

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 364 LADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDV 423
                    +          G    L C  E+           DG ++   G+      +
Sbjct: 16  HGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA-LGMDDRKQQL 74

Query: 424 DKGSYQYIMQLNISNVNISDFDTYRCISKN 453
             GS   I  +  S  +  D   Y+C +  
Sbjct: 75  PNGSL-LIQNILHSRHHKPDEGLYQCEASL 103

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 97.7 bits (243), Expect = 6e-23
 Identities = 41/238 (17%), Positives = 70/238 (29%), Gaps = 32/238 (13%)

Query: 277 NSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG 336
           + +T      P             + V   + VR RC A G+P PSI W     +     
Sbjct: 2   DPDTGVDTGAPYWT-RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISW-LKNGREFRGE 59

Query: 337 SWKDSAV---ASSTLNFTRINRINMGAYMCLADN-------------------VPPQILI 374
                        +L    +   + G Y C+ +N                    P     
Sbjct: 60  HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119

Query: 375 RNRRVGVPIGRTATLECEVEAFPLSVRYW---EFIDGTLIEHDGVKYSISDVDKGSYQ-- 429
                   +G      C+V +       W     ++G+ +  DG  Y        S    
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179

Query: 430 YIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQEEVTVY 485
             ++L ++NV+  D   Y C + N +        L +    A      E + E  +V+
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEAD-EAGSVH 236

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  100 bits (251), Expect = 7e-23
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 31/206 (15%)

Query: 273 SLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP 332
            L+  ++       P I     +     +   +G  V+L C A G+P P+I+W+ ++ KP
Sbjct: 191 PLILRNDGVMGEYEPKI----EVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKP 246

Query: 333 ITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRR 378
           I   + +    ++  L      + + G+Y C+A+N                P  +     
Sbjct: 247 IARKARRHK--SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND 304

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
           + V +  +   EC+    P     W   +G  +     +  I     G+      LNI+ 
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRW-LKNGDPLLTRD-RIQIEQ---GT------LNITI 353

Query: 439 VNISDFDTYRCISKNEVDIAKGSLIL 464
           VN+SD   Y+C+++N+  +   S  L
Sbjct: 354 VNLSDAGMYQCVAENKHGVIFSSAEL 379

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 41/188 (21%), Positives = 61/188 (32%), Gaps = 30/188 (15%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P  V  +        +  E   V+L C   G+PKP I WK      + +G     +V  
Sbjct: 5   GPVFV--QEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVD 61

Query: 346 STLNFTRINRIN-MGAYMCLADN---------------VPPQILIRNRR-VGVPIGRTAT 388
            +L     N+    G Y C+A N                      R R  V V  G+   
Sbjct: 62  GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121

Query: 389 LECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447
           L C            W F +    + +  ++     + G+      L I+ V  SD   Y
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNR-RFVSQ--ETGN------LYIAKVEKSDVGNY 172

Query: 448 RCISKNEV 455
            C+  N V
Sbjct: 173 TCVVTNTV 180

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 86.8 bits (215), Expect = 3e-18
 Identities = 34/192 (17%), Positives = 57/192 (29%), Gaps = 37/192 (19%)

Query: 299 SPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRIN 357
           S + VR G  + L C       + S  W      P    + +  +  +  L   ++ + +
Sbjct: 110 STVSVRRGQGMVLLCGPPPHSGELSYAW-IFNEYPSYQDNRRFVSQETGNLYIAKVEKSD 168

Query: 358 MGAYMCLADNV-------------------------PPQILIRNRRVGVPIGRTATLECE 392
           +G Y C+  N                          P   +     V    G T  LEC 
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF 228

Query: 393 VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452
               P+    W   DG  I     ++  + +          L I N    D  +Y C+++
Sbjct: 229 ALGNPVPTILWRRADGKPIARKARRHKSNGI----------LEIPNFQQEDAGSYECVAE 278

Query: 453 NEVDIAKGSLIL 464
           N          L
Sbjct: 279 NSRGKNVAKGQL 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 98.7 bits (246), Expect = 8e-23
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 27/184 (14%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           SP   ++G++  + C  +  P P++ W     +  T+   + + +A++ L    IN+ + 
Sbjct: 106 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 165

Query: 359 GAYMCLADN----------------VPPQILIRNRR--VGVPIGRTATLECEVEAFPLSV 400
           G Y C                    VPP I +  +        G   T  C     P   
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225

Query: 401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG 460
             W   +G LIE +  KY +             L + N+  SD   Y C + N+    + 
Sbjct: 226 ISWFR-NGKLIEENE-KYILKG-SNTE------LTVRNIINSDGGPYVCRATNKAGEDEK 276

Query: 461 SLIL 464
              L
Sbjct: 277 QAFL 280

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 94.1 bits (234), Expect = 3e-21
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 31/189 (16%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDS 341
           +    +       S S + +  G++    C A G P+  I W   + + I          
Sbjct: 2   MALLQVT-----ISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQK 55

Query: 342 AVASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRT 386
               S L     N  + G Y C A +                               G  
Sbjct: 56  EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 115

Query: 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
           A + C V + P     W + +  +      ++++  +   +      L I N+N SD   
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM--LANNN------LQILNINKSDEGI 167

Query: 447 YRCISKNEV 455
           YRC  + E 
Sbjct: 168 YRCEGRVEA 176

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 46/229 (20%)

Query: 279 ETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW 338
           ET     PP I+            VR G      C A G P PSI+W     K ++    
Sbjct: 1   ETGA--HPPEII--RKP---QNQGVRVGGVASFYCAARGDPPPSIVW-RKNGKKVSGTQS 52

Query: 339 KDSAVASS-TLNFTRINRIN----MGAYMCLADN----------------------VPPQ 371
           + + +     ++  RI  +        Y C+A+N                        P 
Sbjct: 53  RYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPV 112

Query: 372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYI 431
           I        + +G T  + C+    P    YW   + T ++    +YS+ D   G     
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLKD---GF---- 164

Query: 432 MQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQE 480
             L I N    D   Y C+++N +              +  V T+    
Sbjct: 165 --LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR-RVGTKHHHH 210

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 95.3 bits (237), Expect = 1e-22
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 33/190 (17%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVA 344
              +         S   +  G++    C   G  K   I W +   + ++    + S V 
Sbjct: 2   VLQVD-----IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW 56

Query: 345 ----SSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGR 385
               SSTL     N  + G Y C+                                  G 
Sbjct: 57  NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE 116

Query: 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
            A + C+V +       W+     +I    V++ +  +          L I  +  +D  
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--LSNNY------LQIRGIKKTDEG 168

Query: 446 TYRCISKNEV 455
           TYRC  +   
Sbjct: 169 TYRCEGRILA 178

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG-SWKD 340
           ++             + +P   +EG++  + C       P+IIWK  + + + L    + 
Sbjct: 96  KIFQKLMFK-----NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK-HKGRDVILKKDVRF 149

Query: 341 SAVASSTLNFTRINRINMGAYMCLADNV 368
             ++++ L    I + + G Y C    +
Sbjct: 150 IVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 93.6 bits (232), Expect = 5e-22
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 21/184 (11%)

Query: 297 SSSPI---VVREGDNVRLRCVATGHPKPSIIWK-TSENKPITLGSWKDSAVASSTLNFTR 352
           ++  +   V   G  + L C            +       +     K+ A+      F  
Sbjct: 1   AAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVL-----KEDALPGQKTEFKV 55

Query: 353 INRINMGAYMCLADN-----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR 401
            +    G Y C+               PP++        +  G TA L C+ E+ P    
Sbjct: 56  DSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTD 115

Query: 402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFDTYRCISKNEVDIAKG 460
           +  +      +   +  S S     S Q   +L+I N+N+ +D   YRC   +     + 
Sbjct: 116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175

Query: 461 SLIL 464
            + L
Sbjct: 176 IITL 179

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 93.6 bits (233), Expect = 6e-22
 Identities = 39/204 (19%), Positives = 58/204 (28%), Gaps = 37/204 (18%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           + P     E +     + VR   N  L C  TGHPKP + W   + K I     K     
Sbjct: 3   MAPHFK--EEL---RNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIADGLKYRIQE 56

Query: 345 ----SSTLNFTRINRINMGAYMCLADN-------------------VPPQILIRNRRVGV 381
                  L    +   +   Y   A N                     P+ L     V  
Sbjct: 57  FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116

Query: 382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI 441
             G   +++      P  V  W      LI+++G  Y +      +      +  + V  
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITW-QKGQDLIDNNG-HYQVIVTRSFTS----LVFPNGVER 170

Query: 442 SDFDTYRCISKNEV--DIAKGSLI 463
            D   Y   +KN    D     L 
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS---W 338
           ++ +P  I   + +     +    G+ V ++   +G P P I W+      I        
Sbjct: 95  EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQV 153

Query: 339 KDSAVASSTLNFTRINRINMGAYMCLADNV 368
             +   +S +    + R + G Y+  A N 
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 93.4 bits (232), Expect = 6e-22
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 33/189 (17%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKP--SIIWKTSENKPITLGSWKDSAV 343
            P IV SE       I+      V L+C  T          W T     +T         
Sbjct: 3   EPRIVTSE-----EVIIRDSLLPVTLQCNLTSSSHTLMYSYW-TKNGVELTAT---RKNA 53

Query: 344 ASSTLNFTRINRINMGAYMCLADN-------------VPPQILIRNRRVGVPIGRTATLE 390
           ++      +    + G Y C+                  P I    R      G+ A + 
Sbjct: 54  SNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMY 113

Query: 391 CEVEAFPLSVRYWEFIDGTLIEHDGV---KYSISDVDKGSYQYIMQLNISNVNI-SDFDT 446
           C+   +P     W   +  + E       ++ I + +  +     +LNI N+ I  D   
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT-----ELNIVNLQITEDPGE 168

Query: 447 YRCISKNEV 455
           Y C + N +
Sbjct: 169 YECNATNSI 177

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKD 340
           ++   P I G +           EG +  + C + G+P P  +W K        + +   
Sbjct: 88  EVKAAPDITGHK-----RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG 142

Query: 341 SAVASSTLNFTRINRIN------MGAYMCLADN 367
                +  N+T +N +N       G Y C A N
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATN 175

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV--RYWEFIDGTLIEHDGVKYSISDVDK 425
             P+I+     +        TL+C + +   ++   YW          +GV+ + +  + 
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYW--------TKNGVELTATRKNA 53

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKN 453
            +     +  I+     D   Y C+   
Sbjct: 54  SNM----EYRINKPRAEDSGEYHCVYHF 77

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  100 bits (251), Expect = 6e-22
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 33/196 (16%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           P +              V  G      C  TG+P  ++ W   + K I            
Sbjct: 343 PLSAKIDP-----PTQTVDFGRPAVFTCQYTGNPIKTVSW-MKDGKAIGHSE-------- 388

Query: 346 STLNFTRINRINMGAYMCLADNV-----------------PPQILIRNRRVGVPIGRTAT 388
           S L    + + + G Y C   N                  PP I    +   +  G +  
Sbjct: 389 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVF 448

Query: 389 LECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448
           L+C     P     WE  DG  I ++  +Y +      +   +  LNI++V+ +D   Y+
Sbjct: 449 LKCVAGGNPTPEISWEL-DGKKIANND-RYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506

Query: 449 CISKNEVDIAKGSLIL 464
           CI+K++V +A+ S  L
Sbjct: 507 CIAKSKVGVAEHSAKL 522

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 98.5 bits (245), Expect = 4e-21
 Identities = 51/248 (20%), Positives = 71/248 (28%), Gaps = 49/248 (19%)

Query: 273 SLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW-KTSENK 331
             L  +E     +P  +     +             + L C A G+P P   W K  E  
Sbjct: 234 GRLVITEPISSAVPKVV----SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289

Query: 332 PITLGSWKDSAV--ASSTLNFTRINRINMGAYMCLADN--------------VPPQILIR 375
                   +  V   S TL        + G Y+C+ +N               P    I 
Sbjct: 290 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349

Query: 376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN 435
                V  GR A   C+    P+    W   DG  I H                    L 
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSW-MKDGKAIGHSE----------SV------LR 392

Query: 436 ISNVNISDFDTYRCISKNEVDIAKGSLIL-FESNAKTPVPTEKEQEEVTVYNR------- 487
           I +V   D   Y+C  +N+ + A+ S  L        PV  +  QEE             
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV 452

Query: 488 ---APKPE 492
               P PE
Sbjct: 453 AGGNPTPE 460

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 91.5 bits (227), Expect = 5e-19
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 29/202 (14%)

Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLG---S 337
           Q+++ P I+     F+      + G  + L C   G   P +I W   + + I+     +
Sbjct: 614 QVMVLPRII----PFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL-DGQAISEDLGIT 668

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPI 383
                   S L    +   + G + C A N              VPP+ ++         
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQ 728

Query: 384 GRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS 442
           G  A +EC+ + FP   V  W+   G             ++          L++ N+  +
Sbjct: 729 GSDAKVECKADGFPKPQVT-WKKAVGDTPGEYKDLKKSDNIRVEEG----TLHVDNIQKT 783

Query: 443 DFDTYRCISKNEVDIAKGSLIL 464
           +   Y C + N +     ++I+
Sbjct: 784 NEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 86.9 bits (215), Expect = 2e-17
 Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 40/202 (19%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-------W 338
           PP I  +          +  G +V L+CVA G+P P I W+  + K I            
Sbjct: 429 PPVIRQAF-----QEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYV 482

Query: 339 KDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIG 384
             +    S LN T ++  + G Y C+A +                P I  +  +  +  G
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAG 541

Query: 385 RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SD 443
            T  + C V  +P+    WE  D   +  +  K  +     G+      L I NV   SD
Sbjct: 542 ETLIVTCPVAGYPIDSIVWER-DNRALPINR-KQKVF--PNGT------LIIENVERNSD 591

Query: 444 FDTYRCISKNEV-DIAKGSLIL 464
             TY C++KN+    A+GSL +
Sbjct: 592 QATYTCVAKNQEGYSARGSLEV 613

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 86.5 bits (214), Expect = 2e-17
 Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 40/198 (20%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P  +  +    ++ I         + C A+G+P P IIW  S+   +          + 
Sbjct: 38  GPVFL--KE--PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 93

Query: 346 STLNFTRINRINM------GAYMCLADN---------------VPPQILIRNRRVGVPIG 384
             L F      +         Y CLA N               V         +  V  G
Sbjct: 94  GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRG 153

Query: 385 RTATLECEVEAF---PLSVRYWEFIDGTLI---EHDGVKYSISDVDKGSYQYIMQLNISN 438
            +A ++C + +F    + V  W   +            KY +     G       L+I  
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL--PSGE------LHIRE 205

Query: 439 VNISD-FDTYRCISKNEV 455
           V   D + +Y+C +K+ +
Sbjct: 206 VGPEDGYKSYQCRTKHRL 223

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 278 SETSQLLI--PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWK------TSE 329
             T+ L +  PP       I   +     +G + ++ C A G PKP + WK        E
Sbjct: 704 QFTTPLNVYVPPRW-----ILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE 758

Query: 330 NKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
            K +      +  V   TL+   I + N G Y+C A N
Sbjct: 759 YKDLKKSD--NIRVEEGTLHVDNIQKTNEGYYLCEAIN 794

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 89.3 bits (222), Expect = 8e-22
 Identities = 39/83 (46%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGD--MGY 168
           PPG  GP G +G+ G  G  G  G     G PG  GPPGP+G PG  G  GP G    G 
Sbjct: 3   PPGPPGPPGPRGQPGVMGFPGPPGP-PXXGPPGPPGPPGPRGQPGVMGFPGPPGPPXXGP 61

Query: 169 PGPQGIPGDEGKRGPKGDMGYPG 191
           PGP G PG  G+ G  G  G PG
Sbjct: 62  PGPPGPPGPRGQPGVMGFPGPPG 84

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 42/87 (48%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRD 199
           G PG  GPPGP+G PG  G  GP G     GP G PG  G RG  G MG+PG  G     
Sbjct: 2   GPPGPPGPPGPRGQPGVMGFPGPPGP-PXXGPPGPPGPPGPRGQPGVMGFPGPPG-PPXX 59

Query: 200 GLPGEPGLDGIPGRNGMDGIPGKDGLP 226
           G PG PG  G  G+ G+ G PG  G P
Sbjct: 60  GPPGPPGPPGPRGQPGVMGFPGPPGPP 86

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 86.6 bits (215), Expect = 9e-21
 Identities = 39/87 (44%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 116 GPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIP 175
           GP G  G  G +G+ GV G  G  G P   GPPGP G PG  G+ G  G  G PGP    
Sbjct: 2   GPPGPPGPPGPRGQPGVMGFPGPPG-PPXXGPPGPPGPPGPRGQPGVMGFPGPPGP-PXX 59

Query: 176 GDEGKRGPKGDMGYPGRIGLDGRDGLP 202
           G  G  GP G  G PG +G  G  G P
Sbjct: 60  GPPGPPGPPGPRGQPGVMGFPGPPGPP 86

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 37/88 (42%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPK 184
           G  G  G  G RG+ G  G  GPPGP    G  G  GP G  G PG  G PG  G     
Sbjct: 2   GPPGPPGPPGPRGQPGVMGFPGPPGP-PXXGPPGPPGPPGPRGQPGVMGFPGPPG----P 56

Query: 185 GDMGYPGRIGLDGRDGLPGEPGLDGIPG 212
              G PG  G  G  G PG  G  G PG
Sbjct: 57  PXXGPPGPPGPPGPRGQPGVMGFPGPPG 84

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 42/91 (46%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEP 205
           GPPGP G PG    RG  G MG+PGP G        GP G  G PG  G  G  G PG P
Sbjct: 2   GPPGPPGPPGP---RGQPGVMGFPGPPG----PPXXGPPGPPGPPGPRGQPGVMGFPGPP 54

Query: 206 GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 236
           G     G  G  G PG  G PG  G PG  G
Sbjct: 55  G-PPXXGPPGPPGPPGPRGQPGVMGFPGPPG 84

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 41/93 (44%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 229
           GP G PG  G RG  G MG+PG  G       P   G  G PG  G  G PG  G PG  
Sbjct: 2   GPPGPPGPPGPRGQPGVMGFPGPPG-------PPXXGPPGPPGPPGPRGQPGVMGFPGPP 54

Query: 230 GIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G P   G  G  G  GPRG  G  G  G PG P
Sbjct: 55  G-PPXXGPPGPPGPPGPRGQPGVMGFPGPPGPP 86

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 29/65 (44%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 111 PPGLQGP--IGQKGEIGAKGEMGVKGERGEKGAPG--VVGPPGPQGIPGDEGKRGPKGDM 166
            PG  GP   G  G  G  G  G  G  G  G PG    GPPGP G PG  G+ G  G  
Sbjct: 21  FPGPPGPPXXGPPGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGVMGFP 80

Query: 167 GYPGP 171
           G PGP
Sbjct: 81  GPPGP 85

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 111 PPGLQGPIGQKGEIGAKGEMG--------VKGERGEKGAPGVVGPPGPQGIP 154
           PPG  GP GQ G +G  G  G          G  G +G PGV+G PGP G P
Sbjct: 35  PPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGVMGFPGPPGPP 86

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 95.6 bits (237), Expect = 1e-21
 Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 20/187 (10%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRIN 357
             P+  +E  +  +RC  T            + K +           +           +
Sbjct: 98  GLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYH 157

Query: 358 MGAYMCLADN-------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL 398
                C A                       P + +      +  G T T+ C ++    
Sbjct: 158 RLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVST 217

Query: 399 SVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
           SV   W  ++        VK++       +Y+    L IS+  + D   + C + N    
Sbjct: 218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277

Query: 458 AKGSLIL 464
           A  +  L
Sbjct: 278 ANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 74.0 bits (181), Expect = 2e-14
 Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 34/180 (18%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP+I  ++     S ++V  GD + L C+        + W             +      
Sbjct: 12  PPSIHPAQ-----SELIVEAGDTLSLTCIDPD----FVRWTFKTYFN------EMVENKK 56

Query: 346 STLNFTRINRINMGAYMCLADN-----------VPPQILIRNRRVGVPIGRTATLECEVE 394
           +     +      G Y C   N            P ++ +    +       A + C + 
Sbjct: 57  NEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT 116

Query: 395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
              +S       DG  +  D     + +   G          +          RC ++ +
Sbjct: 117 DPQVSQYSLIECDGKSLPTDL--TFVPNPKAGI------TIKNVKRAYHRLCVRCAAQRD 168

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 36/200 (18%)

Query: 284 LIPPTIVGSEHIFSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD- 340
           L    +          P   VV       + C A+G+P P I W   +  P+   +    
Sbjct: 99  LREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW-FKDFLPVDPSASNGR 157

Query: 341 -SAVASSTLNFTRINRINMGAYMCLADN------------------VPPQILIRNRRVGV 381
              + S  L        + G Y C+A N                  V P+  I      +
Sbjct: 158 IKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEI 217

Query: 382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI 441
             G    + C     P+    W                  D+       + +  +   ++
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKW--------MQGA-----EDLTPEDDMPVGRNVLELTDV 264

Query: 442 SDFDTYRCISKNEVDIAKGS 461
            D   Y C++ + + + +  
Sbjct: 265 KDSANYTCVAMSSLGVIEAV 284

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 91.0 bits (226), Expect = 4e-20
 Identities = 38/195 (19%), Positives = 58/195 (29%), Gaps = 38/195 (19%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP  +           +   G      C ATG PKP + W   + K +    ++      
Sbjct: 6   PPRFIKE-----PKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIEFDE 59

Query: 346 STLNFTRINRINM----GAYMCLADN---------------------VPPQILIRNRRVG 380
           S     RI  +        Y C+A N                       P I +  +   
Sbjct: 60  SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV 119

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
           V   RTAT+ C     P     W   D   ++       I  +  G+      L I +  
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQLRSGA------LQIESSE 172

Query: 441 ISDFDTYRCISKNEV 455
            +D   Y C++ N  
Sbjct: 173 ETDQGKYECVATNSA 187

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
            PP+ +   +      G  A+  C+    P     W    G  +     +    D   G+
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTW-NKKGKKVNSQRFETIEFDESAGA 63

Query: 428 YQYIMQLNISNVNI-SDFDTYRCISKNEV--DIAKGSL-ILFESNAKTPVPT-EKEQEEV 482
                 L I  +    D + Y C+++N V        L +L E    +  P  +   +  
Sbjct: 64  V-----LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118

Query: 483 TV 484
            V
Sbjct: 119 VV 120

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 42/197 (21%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK----- 339
            PP IV  EH    S ++V +G+   L C A G P P+I W     + +           
Sbjct: 8   FPPRIV--EHP---SDLIVSKGEPATLNCKAEGRPTPTIEWY-KGGERVETDKDDPRSHR 61

Query: 340 ----DSAVASSTLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRV 379
                 ++    +   R +R + G Y+C+A N                +          V
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121

Query: 380 GVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
            V +G  A +EC+     P     W+  DG+ ++    + +I     G       L I+ 
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERITIRG---GK------LMITY 171

Query: 439 VNISDFDTYRCISKNEV 455
              SD   Y C+  N V
Sbjct: 172 TRKSDAGKYVCVGTNMV 188

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 366 DNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG--VKYSISDV 423
           ++ PP+I+     + V  G  ATL C+ E  P     W +  G  +E D    +     +
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEW-YKGGERVETDKDDPRSHRMLL 64

Query: 424 DKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
             GS    +++     +  D   Y C+++N +
Sbjct: 65  PSGSLF-FLRIVHGRKSRPDEGVYVCVARNYL 95

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 92.7 bits (230), Expect = 3e-21
 Identities = 36/231 (15%), Positives = 59/231 (25%), Gaps = 34/231 (14%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
           SE S     P    +E +       V   + V+ RC A G+P P++ W     K      
Sbjct: 7   SENSNNKRAPYWTNTEKMEKRL-HAVPAANTVKFRCPAGGNPMPTMRW-LKNGKEFKQEH 64

Query: 338 WKDSAV---ASSTLNFTRINRINMGAYMCLADN-------------------VPPQILIR 375
                       +L    +   + G Y C+ +N                    P      
Sbjct: 65  RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124

Query: 376 NRRVGVPIGRTATLECEVEAFPLSVRYW----EFIDGTLIEHDGVKYSISDVDKGSYQYI 431
                  +G      C+V +       W    E               +      +    
Sbjct: 125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184

Query: 432 MQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQE 480
             L + NV  +D   Y C   N +        L +            +E+E
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK----QQAPGREKE 231

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 95.4 bits (237), Expect = 4e-21
 Identities = 42/204 (20%), Positives = 63/204 (30%), Gaps = 36/204 (17%)

Query: 277 NSETSQLLIPPTIVGSEHI--FSSSPIVVREGDNVRLRCVATGHPKPSIIW-KTSENKPI 333
            ++   ++  P    +         P+ +     + L C A G P PS  W K  E    
Sbjct: 196 ATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR 255

Query: 334 TLGSWKDSAV--ASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNR 377
                 +  V   S TL        + G Y+C+ +N               P    I   
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 315

Query: 378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS 437
              V  GR A   C+    P+    W   DG  I H                    L I 
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSW-MKDGKAIGHSE----------SV------LRIE 358

Query: 438 NVNISDFDTYRCISKNEVDIAKGS 461
           +V   D   Y+C  +N+ + A+ S
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEAS 382

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 86.9 bits (215), Expect = 3e-18
 Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 40/198 (20%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P  +       ++ I         + C A+G+P P IIW  S+   +          + 
Sbjct: 3   GPVFLKE----PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58

Query: 346 STLNFTRINRINM------GAYMCLADN---------------VPPQILIRNRRVGVPIG 384
             L F      +         Y CLA N               V         +  V  G
Sbjct: 59  GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRG 118

Query: 385 RTATLECEVEAF---PLSVRYWEFIDGTLI---EHDGVKYSISDVDKGSYQYIMQLNISN 438
            +A ++C + +F    + V  W   +            KY +     G       L+I  
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL--PSGE------LHIRE 170

Query: 439 VNISD-FDTYRCISKNEV 455
           V   D + +Y+C +K+ +
Sbjct: 171 VGPEDGYKSYQCRTKHRL 188

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 73.0 bits (179), Expect = 9e-14
 Identities = 27/197 (13%), Positives = 52/197 (26%), Gaps = 36/197 (18%)

Query: 299 SPIVVREGDNVRLRCVA---TGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTR 352
           +   V  G++  ++C+           + W T E +    G+  D          L+   
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170

Query: 353 INRI-NMGAYMCLADN------------------------VPPQILIRNRRVGVPIGRTA 387
           +       +Y C   +                         P    +  + + + +  T 
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI 230

Query: 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447
           +L C  + FP     W            V  +              L I +  + D   Y
Sbjct: 231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG-----TLIIKDAVVEDSGKY 285

Query: 448 RCISKNEVDIAKGSLIL 464
            C+  N V       +L
Sbjct: 286 LCVVNNSVGGESVETVL 302

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 89.9 bits (223), Expect = 7e-21
 Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 42/190 (22%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----WKDS 341
              ++G+        + V +G  V+L C   G  +P I W   +   +            
Sbjct: 2   GLKLMGAP-----VKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPVSE 55

Query: 342 AVASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRT 386
                 L+   + R + G Y C  ++                 P   +  + + VP    
Sbjct: 56  QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAP 115

Query: 387 ATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
             L CE    P  V   W +   T I       S+               ++   ++   
Sbjct: 116 FQLSCEAVGPPEPVTIVW-WRGTTKIGGPAPSPSV---------------LNVTGVTQST 159

Query: 446 TYRCISKNEV 455
            + C + N  
Sbjct: 160 MFSCEAHNLK 169

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 96.4 bits (240), Expect = 9e-21
 Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--KDSAV 343
           PP  +           +V++ ++ R  C   G P+  ++W   +   I   S        
Sbjct: 290 PPRFI----KKLEPSRIVKQDEHTRYECKIGGSPEIKVLW-YKDETEIQESSKFRMSFVE 344

Query: 344 ASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATL 389
           + + L    ++  + G Y C A N               PP    +   V    G    L
Sbjct: 345 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHL 404

Query: 390 ECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
           ECE++  P     W   D   +     KY I   +  +      ++I NV+ +D   Y+C
Sbjct: 405 ECELQGTPPFQVSWHK-DKRELRSGK-KYKIMSENFLT-----SIHILNVDSADIGEYQC 457

Query: 450 ISKNEVDIAKGSLIL 464
            + N+V        +
Sbjct: 458 KASNDVGSDTCVGSI 472

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 96.0 bits (239), Expect = 1e-20
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 32/218 (14%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP       I     +    G+ + L+C   G P+  I W   E+  +           +
Sbjct: 5   PPYF-----IEPLEHVEAAIGEPITLQCKVDGTPEIRIAW-YKEHTKLRSAPAYKMQFKN 58

Query: 346 S--TLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRT 386
           +  +L   +++  ++G Y C A+N                 +PP    + + V   +G  
Sbjct: 59  NVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFP 118

Query: 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
              EC +         W + DG L++ D      S +   +      L I   + S    
Sbjct: 119 VAFECRINGSEPLQVSW-YKDGELLKDDA-NLQTSFIHNVA-----TLQILQTDQSHVGQ 171

Query: 447 YRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
           Y C + N +  A  S  L  S  + P   + +   V +
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDL 209

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 96.0 bits (239), Expect = 1e-20
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 32/199 (16%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSA 342
           +PP+            +    G  V   C   G     + W   + + +   +       
Sbjct: 100 LPPSFARKL-----KDVHETLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQTSFI 153

Query: 343 VASSTLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGR 385
              +TL   + ++ ++G Y C A N                 VPP   ++   V + +G 
Sbjct: 154 HNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGE 213

Query: 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
           + T +C V         W   +  +      K ++ +           L +  V   D  
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-------TLTVLKVTKGDAG 266

Query: 446 TYRCISKNEVDIAKGSLIL 464
            Y C + N       S  L
Sbjct: 267 QYTCYASNVAGKDSCSAQL 285

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 93.7 bits (233), Expect = 7e-20
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 34/198 (17%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----WKDS 341
           PP            P+   +G +V L C   G P   + W   + + +  G       ++
Sbjct: 384 PPVFRKKP-----HPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSEN 437

Query: 342 AVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTA 387
            +  ++++   ++  ++G Y C A N               PP+ + +   +   +G   
Sbjct: 438 FL--TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEV 495

Query: 388 TLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
            L+  +E    +SV  W   D   I  +     IS  +  +      L  S    ++   
Sbjct: 496 QLQATIEGAEPISVA-WFK-DKGEIVRESDNIWISYSENIA-----TLQFSRAEPANAGK 548

Query: 447 YRCISKNEVDIAKGSLIL 464
           Y C  KNE    +    L
Sbjct: 549 YTCQIKNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 90.6 bits (225), Expect = 5e-19
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 30/197 (15%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           +PP             + +  G++   +C  TG     I W   +N+ I  G      + 
Sbjct: 196 VPPFF-----DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLV 249

Query: 345 --SSTLNFTRINRINMGAYMCLADN--------------VPPQILIR-NRRVGVPIGRTA 387
             ++TL   ++ + + G Y C A N               PP+ + +      V      
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 309

Query: 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447
             EC++   P     W + D T I+    K+ +S V+  +      L + N+++ D   Y
Sbjct: 310 RYECKIGGSPEIKVLW-YKDETEIQESS-KFRMSFVESVA-----VLEMYNLSVEDSGDY 362

Query: 448 RCISKNEVDIAKGSLIL 464
            C + N    A  S  L
Sbjct: 363 TCEAHNAAGSASSSTSL 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 37/197 (18%)

Query: 274 LLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW-KTSENKP 332
           L   +E ++   P            +      G  V L C A G+P P I W K   ++ 
Sbjct: 195 LSLAAEDARQYAPSIKAKF-----PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT 249

Query: 333 ITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRR 378
               S          L+   ++  + G Y C A+N                P  L     
Sbjct: 250 SKWLSS------EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITD 303

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
               IG      C     P     W   DG  +     +  +S    G       L  S 
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRW-LRDGQPLASQN-RIEVSG---GE------LRFSK 352

Query: 439 VNISDFDTYRCISKNEV 455
           + + D   Y+C+++N+ 
Sbjct: 353 LVLEDSGMYQCVAENKH 369

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 79.9 bits (197), Expect = 6e-16
 Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 30/221 (13%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P     E    +        + V L C A  +P  +  WK      + +G      + +
Sbjct: 4   GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRYRLVA 60

Query: 346 STLNFTRINRI-NMGAYMCLADN---------------VPPQILIRNRR-VGVPIGRTAT 388
             L  +   +  + G+Y C+A N                  +     R  V +  G    
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120

Query: 389 LECEVEA-FPLSVRYWEFIDGTL-IEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
             C     +P     W   +    I  DG ++       G+      L I+    SD   
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS--QTTGN------LYIAKTEASDLGN 172

Query: 447 YRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNR 487
           Y C + + +D    S+    S         ++         
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF 213

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 41/194 (21%)

Query: 299 SPIVVREGDNVRLRCVAT-GHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRI 356
            P+ + EG  V   C     +P  S  W        I     +  +  +  L   +    
Sbjct: 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS 168

Query: 357 NMGAYMCLADNV--------------------------PPQILIRNRRVGVPIGRTATLE 390
           ++G Y C A +                           P              G+  TLE
Sbjct: 169 DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLE 228

Query: 391 CEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450
           C     P+    W  +DG+          +             L+I NV+  D  TY C 
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPL-------------LHIQNVDFEDEGTYECE 275

Query: 451 SKNEVDIAKGSLIL 464
           ++N          +
Sbjct: 276 AENIKGRDTYQGRI 289

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 95.1 bits (236), Expect = 2e-20
 Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 32/244 (13%)

Query: 278 SETSQLLIPPTIVGSEHIFSS-SPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITL 335
           SE   L + P       +  S +  ++REG+   + C            WK  EN    L
Sbjct: 197 SEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR-ENSQTKL 255

Query: 336 GSW-------KDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILI 374
                       +    +TL  +     + G +MC A+N                  I I
Sbjct: 256 QEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINI 315

Query: 375 ---RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYI 431
               N  V V  G    L  E EAFP                    Y  S+ ++ + +Y+
Sbjct: 316 FPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE-NESNIRYV 374

Query: 432 MQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRA--- 488
            +L+++ +  ++  TY  +  N    A  +  +   N K  + T        +   A   
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV-YVNTKPEILTYDRLVNGMLQCVAAGF 433

Query: 489 PKPE 492
           P+P 
Sbjct: 434 PEPT 437

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 94.3 bits (234), Expect = 3e-20
 Identities = 37/205 (18%), Positives = 57/205 (27%), Gaps = 34/205 (16%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW------- 338
              I  +     ++ + V +G+NV L       PKP        N+  T           
Sbjct: 310 KGFI--NIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367

Query: 339 KDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIG 384
           + +    S L+ TR+     G Y  L  N                P+IL           
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILT------YDRL 421

Query: 385 RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ-----YIMQLNISNV 439
               L+C    FP     W F  GT          +      S        ++Q +I + 
Sbjct: 422 VNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS 481

Query: 440 NISDFDTYRCISKNEVDIAKGSLIL 464
                 T  C + N+V         
Sbjct: 482 AFKHNGTVECKAYNDVGKTSAYFNF 506

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 80.5 bits (198), Expect = 7e-16
 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 22/189 (11%)

Query: 296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR 355
                +  +E ++  +RC  T  P+ +                +      + +    + R
Sbjct: 119 LVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKR 177

Query: 356 I-NMGAYMCLADN-------------------VPPQILIRNRRVGVPIGRTATLECEVEA 395
             +     C  D                      P + +      +  G   T+ C ++ 
Sbjct: 178 AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKD 237

Query: 396 FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
              SV      + +  +    KY+       +Y+    L IS+  ++D   + C + N  
Sbjct: 238 VSSSVYSTWKRENSQTK-LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF 296

Query: 456 DIAKGSLIL 464
             A  +  L
Sbjct: 297 GSANVTTTL 305

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 38/215 (17%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP+I   +     S ++VR GD +RL C   G     + W                    
Sbjct: 36  PPSIHPGK-----SDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENK-------Q 79

Query: 346 STLNFTRINRINMGAYMCLADN-----------VPPQILIRNRRVGVPIGRTATLECEVE 394
           +     +    N G Y C   +            P ++ + +R +         + C + 
Sbjct: 80  NEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLT 139

Query: 395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS-DFDTYRCISKN 453
              ++    +   G  +    +++   D   G       + I +V  +       C    
Sbjct: 140 DPEVTNYSLKGCQGKPLP-KDLRFIP-DPKAG-------IMIKSVKRAYHRLCLHCSVDQ 190

Query: 454 EV-DIAKGSLILFESNAKTPVPTEKEQEEVTVYNR 487
           E   +     IL    A   VP     +   +   
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLRE 225

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 26/197 (13%)

Query: 273 SLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP 332
           +L   +        P+ +  +   ++S  +V  G ++ L C+A+G P P I W   +   
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQG--TASSQMVLRGMDLLLECIASGVPTPDIAW-YKKGGD 262

Query: 333 ITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRR 378
           +     K     +  L  T ++  + G Y CLA N                P  L   + 
Sbjct: 263 LPSDKAK-FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKN 321

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
           + +  G    L C     P     W  ++G  ++      +   V   +      +   +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQW-MVNGEPLQSAPPNPNRE-VAGDT------IIFRD 373

Query: 439 VNISDFDTYRCISKNEV 455
             IS    Y+C + NE 
Sbjct: 374 TQISSRAVYQCNTSNEH 390

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 84.2 bits (208), Expect = 3e-17
 Identities = 49/239 (20%), Positives = 70/239 (29%), Gaps = 38/239 (15%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
           S  ++L  PPTI       S+   +V   DN+ + C A G+P PS  W    ++   +  
Sbjct: 8   SIQNELTQPPTIT----KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAK 62

Query: 338 WKDSAV--ASSTLNFTRINRINM----GAYMCLADN---------------VPPQILIRN 376
               ++   S TL     +        G Y C A N                 P     N
Sbjct: 63  DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKEN 122

Query: 377 R-RVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL 434
              V V  G   TL+C      P  V +W       I  D  + S      G       L
Sbjct: 123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQG--HNGD------L 173

Query: 435 NISNVNISDFD-TYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPE 492
             SNV + D    Y C ++            F     T     +              +
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 73.8 bits (181), Expect = 6e-14
 Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 40/195 (20%)

Query: 299 SPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI- 356
            P+VV+EG  + L+C    G P P I W +S  +PIT    + S   +  L F+ +    
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQGHNGDLYFSNVMLQD 182

Query: 357 NMGAYMCLADNV------------------------PPQILIRNRR---VGVPIGRTATL 389
               Y C A                            P  +          V  G    L
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLL 242

Query: 390 ECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
           EC     P     W    G  +  D  K+   +    +      L I+NV+  D   Y C
Sbjct: 243 ECIASGVPTPDIAWYK-KGGDLPSDKAKFENFN---KA------LRITNVSEEDSGEYFC 292

Query: 450 ISKNEVDIAKGSLIL 464
           ++ N++   + ++ +
Sbjct: 293 LASNKMGSIRHTISV 307

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 93.1 bits (231), Expect = 3e-20
 Identities = 32/202 (15%), Positives = 60/202 (29%), Gaps = 38/202 (18%)

Query: 274 LLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPI 333
                + S     P        + S  ++ + GD   + C+   +P     +     K +
Sbjct: 200 KGVTKDNSGYKGEPVPQ-----YVSKDMMAKAGDVTMIYCMYGSNPMGYPNY-FKNGKDV 253

Query: 334 TLGSW----KDSAVASSTLNFTRINRINMGAYMCLADN---------------VPPQILI 374
                    + +  +   L F      + G Y C  DN                 P+   
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ 313

Query: 375 R-NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433
           +  + + V  G+  T+ C+V   P     W   +   +     + +++D           
Sbjct: 314 KPEKVIVVKQGQDVTIPCKVTGLPAPNVVW-SHNAKPLSGG--RATVTD---SG------ 361

Query: 434 LNISNVNISDFDTYRCISKNEV 455
           L I  V   D   Y C + NE 
Sbjct: 362 LVIKGVKNGDKGYYGCRATNEH 383

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 36/194 (18%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P +         + ++ RE +   L C+  G+ +        + K         +    
Sbjct: 6   YPVL-----KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60

Query: 346 S-TLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATL 389
             +L F R    + G Y C A+                       +        GR   L
Sbjct: 61  EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120

Query: 390 ECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN----ISNVN---I 441
           +C +  A+P  +  W+    +  + +       DV     +     +     + V    +
Sbjct: 121 DCVLPNAYPKPLITWKK-RLSGADPNA------DVTDFDRRITAGPDGNLYFTIVTKEDV 173

Query: 442 SDFDTYRCISKNEV 455
           SD   Y C +KN  
Sbjct: 174 SDIYKYVCTAKNAA 187

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           +  P +  +   V         LEC +E     V+Y    DG          ++   + G
Sbjct: 4   DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-G 62

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEV 455
           S      L       SD   Y+C ++   
Sbjct: 63  S------LVFLRPQASDEGHYQCFAETPA 85

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 87.8 bits (218), Expect = 6e-20
 Identities = 34/201 (16%), Positives = 58/201 (28%), Gaps = 37/201 (18%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----WKDS 341
            P I   + +     +  + G+  +L C   G P P I W     K +          D 
Sbjct: 7   APGIR--KEM---KDVTTKLGEAAQLSCQIVGRPLPDIKW-YRFGKELIQSRKYKMSSDG 60

Query: 342 AVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNR---RVGVPIG 384
                TL      + + G Y C+A N                PQ         +    +G
Sbjct: 61  RT--HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVG 118

Query: 385 RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISD 443
            T  L       P+    W      L+++     +I + +  +      L + NV   + 
Sbjct: 119 STLRLHVMYIGRPVPAMTWFH-GQKLLQNSE-NITIENTEHYT-----HLVMKNVQRKTH 171

Query: 444 FDTYRCISKNEVDIAKGSLIL 464
              Y+    N        L +
Sbjct: 172 AGKYKVQLSNVFGTVDAILDV 192

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 90.4 bits (224), Expect = 1e-19
 Identities = 38/212 (17%), Positives = 64/212 (30%), Gaps = 30/212 (14%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
            +T      P     E +     + V   + VR RC A G+P PSI W     +      
Sbjct: 111 EDTGVDTGAPYWTRPERM-DKKLLAVPAANTVRFRCPAAGNPTPSISW-LKNGREFRGEH 168

Query: 338 WKDSAV---ASSTLNFTRINRINMGAYMCLADN-------------------VPPQILIR 375
                       +L    +   + G Y C+ +N                    P      
Sbjct: 169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 228

Query: 376 NRRVGVPIGRTATLECEVEAFPLSVRYW---EFIDGTLIEHDGVKYSISDVDKGSYQYIM 432
                  +G      C+V +       W     ++G+ +  DG  Y       G+     
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288

Query: 433 Q---LNISNVNISDFDTYRCISKNEVDIAKGS 461
           +   L++ NV   D   Y C++ N +  +  S
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS 320

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 35/228 (15%), Positives = 57/228 (25%), Gaps = 51/228 (22%)

Query: 299 SPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRIN 357
             +V   GD V L C    G P    +W   +   +         V    L     +  +
Sbjct: 16  EQLVFGSGDAVELSCPPPGGGPMGPTVWV-KDGTGLVPSE--RVLVGPQRLQVLNASHED 72

Query: 358 MGAYMCLADN-----------------------------------VPPQIL----IRNRR 378
            GAY C                                         P       +  + 
Sbjct: 73  SGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKL 132

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
           + VP   T    C     P     W   +G     +     I    +        L + +
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISW-LKNGREFRGEHRIGGIKLRHQQW-----SLVMES 186

Query: 439 VNISDFDTYRCISKNEVDIAKGS--LILFESNAKTPVPTEKEQEEVTV 484
           V  SD   Y C+ +N+    + +  L + E +   P+         T 
Sbjct: 187 VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 234

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 12/126 (9%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           VP     +  ++    G    L C      P+    W   DGT +     +  +      
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVW-VKDGTGLVPSE-RVLVGPQ--- 61

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYN 486
                 +L + N +  D   Y C  +    +     +       +    + E E      
Sbjct: 62  ------RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115

Query: 487 RAPKPE 492
               P 
Sbjct: 116 DTGAPY 121

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 91.0 bits (226), Expect = 1e-19
 Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 27/186 (14%)

Query: 301 IVVREGDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWK-------DSAVASSTLNFTR 352
               E   V L C A G P P I W +  +    T G               SS+L+   
Sbjct: 10  ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKD 69

Query: 353 INRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL 398
           +   + G Y C A +                P+ +          G    + C+V++ P 
Sbjct: 70  VKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP 129

Query: 399 SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458
           +  +W      L   +          +        L I+  + +DF  Y C + N +   
Sbjct: 130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKM-----ILEIAPTSDNDFGRYNCTATNHIGTR 184

Query: 459 KGSLIL 464
               IL
Sbjct: 185 FQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 54.4 bits (131), Expect = 9e-08
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW----K 339
              P  + +      +     EG+ + + C    +P  SI W   +   +   +      
Sbjct: 98  EYAPKFISN-----QTIYYSWEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKT 151

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADNV 368
            S      L     +  + G Y C A N 
Sbjct: 152 YSTGRKMILEIAPTSDNDFGRYNCTATNH 180

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 92.7 bits (230), Expect = 2e-19
 Identities = 37/192 (19%), Positives = 56/192 (29%), Gaps = 42/192 (21%)

Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS 341
            +L  P         S S    R G N+ L C A  +P     W   +            
Sbjct: 376 NVLYGPDDP----TISPSYTYYRPGVNLSLSCHAASNPPAQYSW-LIDGNIQQ------- 423

Query: 342 AVASSTLNFTRINRINMGAYMCLADN------------------VPPQILIRNRRVGVPI 383
              +  L  + I   N G Y C A+N                  +P   +  N    V  
Sbjct: 424 --HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481

Query: 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD 443
                  CE EA   +  +W  ++G  +         +     +      L + NV  +D
Sbjct: 482 KDAVAFTCEPEAQNTTYLWW--VNGQSLPVSPRLQLSN--GNRT------LTLFNVTRND 531

Query: 444 FDTYRCISKNEV 455
              Y C  +N V
Sbjct: 532 ARAYVCGIQNSV 543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 88.1 bits (218), Expect = 5e-18
 Identities = 34/221 (15%), Positives = 62/221 (28%), Gaps = 45/221 (20%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIW-----------------KTSENKPITLGSWKD 340
           S+P  V EG  V L             W                  T +  P    S ++
Sbjct: 6   STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65

Query: 341 SAVASSTLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPI 383
               +++L    I + + G Y                       +P   +  N    V  
Sbjct: 66  IIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED 125

Query: 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD 443
                  CE E    +   W   + +L     ++ S  +    +      L + NV  +D
Sbjct: 126 KDAVAFTCEPETQDATYL-WWVNNQSLPVSPRLQLSNGN---RT------LTLFNVTRND 175

Query: 444 FDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
             +Y+C ++N V   +   ++         PT       + 
Sbjct: 176 TASYKCETQNPVSARRSDSVILNVLYGPDAPTI-SPLNTSY 215

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 36/186 (19%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
           I S++   V + D V   C         + W     + + +      +  + TL    + 
Sbjct: 471 ISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQLSNGNRTLTLFNVT 528

Query: 355 RINMGAYMCLADNV----------------PPQILIRNRRVGVPIGRTATLECEVEAFPL 398
           R +  AY+C   N                 P   +I         G    L C   + P 
Sbjct: 529 RNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPS 588

Query: 399 SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458
               W  I+G   +H  V                 L I+ +  ++  TY C   N     
Sbjct: 589 PQYSW-RINGIPQQHTQV-----------------LFIAKITPNNNGTYACFVSNLATGR 630

Query: 459 KGSLIL 464
             S++ 
Sbjct: 631 NNSIVK 636

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 37/207 (17%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
           I S++   V + D V   C        + +W    N+ + +      +  + TL    + 
Sbjct: 115 ISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWV-NNQSLPVSPRLQLSNGNRTLTLFNVT 172

Query: 355 RINMGAYMCLADNV----------------PPQILIRNRRVGVPIGRTATLECEVEAFPL 398
           R +  +Y C   N                 P    I         G    L C   + P 
Sbjct: 173 RNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPP 232

Query: 399 SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458
           +   W F++GT  +                     L I N+ +++  +Y C + N     
Sbjct: 233 AQYSW-FVNGTFQQSTQE-----------------LFIPNITVNNSGSYTCQAHNSDTGL 274

Query: 459 KGSLILF-ESNAKTPVPTEKEQEEVTV 484
             + +      A+ P P         V
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPV 301

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 86.2 bits (213), Expect = 2e-17
 Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 42/208 (20%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--ASSTLNFTR 352
             S      R G+N+ L C A  +P     W            + +     ++  L    
Sbjct: 207 TISPLNTSYRSGENLNLSCHAASNPPAQYSW------------FVNGTFQQSTQELFIPN 254

Query: 353 INRINMGAYMCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVE 394
           I   N G+Y C A N                   P   +  N    V       L CE E
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPE 314

Query: 395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
               +   W   + +L     ++ S  +           L + +V  +D   Y C  +NE
Sbjct: 315 IQNTTYL-WWVNNQSLPVSPRLQLSNDN---------RTLTLLSVTRNDVGPYECGIQNE 364

Query: 455 VDIAKGSLILFESNAKTPVPTEKEQEEV 482
           + +     ++         PT       
Sbjct: 365 LSVDHSDPVILNVLYGPDDPTISPSYTY 392

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 21/93 (22%), Positives = 27/93 (29%), Gaps = 16/93 (17%)

Query: 277 NSETSQL--LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPIT 334
            S+   L  L  P       I S        G N+ L C +  +P P   W      P  
Sbjct: 547 RSDPVTLDVLYGPDTP----IISPPDSSYLSGANLNLSCHSASNPSPQYSW-RINGIPQQ 601

Query: 335 LGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
                     +  L   +I   N G Y C   N
Sbjct: 602 ---------HTQVLFIAKITPNNNGTYACFVSN 625

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 11/119 (9%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ------- 433
           V  G+   L        L    W +    +  +  +   +    + +             
Sbjct: 11  VAEGKEVLLLVHNLPQHLFGYSW-YKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69

Query: 434 ---LNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAP 489
              L I N+  +D   Y         + + +   F    + P P+        V ++  
Sbjct: 70  NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 86.5 bits (214), Expect = 3e-19
 Identities = 47/234 (20%), Positives = 72/234 (30%), Gaps = 59/234 (25%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
              S  L+P     + +        V  G  V+L C ATGHP     W    NK I  G+
Sbjct: 8   HHHSSGLVPRGSKITVN---PESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPNGN 63

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN------------------------------ 367
                  +S L F  ++  + G Y+C  +N                              
Sbjct: 64  -------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
              QI +      +  G T  L+C     P+    W F +   + H+  K          
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQW-FKNELPLTHETKKL--------- 166

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQ 479
                   +  V++    TY C   N+     +K   I+ +       P  KEQ
Sbjct: 167 ------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 87.3 bits (216), Expect = 7e-19
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 27/199 (13%)

Query: 288 TIVGSEHIFSSSP--IVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA 344
            +    H ++     + V EG    L C+ T    K S+     E     L         
Sbjct: 84  YVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLM-REGGRQVLRKTVYFFSP 142

Query: 345 SSTLNFTRINRINMGAYMCLADN-------------------VPPQILIRNRRVGVPIGR 385
                  +   ++   Y+C                        PPQI +   ++    G 
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGE 202

Query: 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
            A + C      +          T +E        SD     Y+ +  L+++ V+  D  
Sbjct: 203 AAQIVCSATNAEVGFNVILKRGDTKLEIPLN----SDFQDNYYKKVRALSLNAVDFQDAG 258

Query: 446 TYRCISKNEVDIAKGSLIL 464
            Y C++ N+V     ++  
Sbjct: 259 IYSCVASNDVGTRTATMNF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 78.1 bits (192), Expect = 8e-16
 Identities = 44/216 (20%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P I  S        +VV  G+ V LRCV+ G    S+ W      PI+     D     
Sbjct: 4   APVIEPSG-----PELVVEPGETVTLRCVSNG----SVEWD----GPISPYWTLDPESPG 50

Query: 346 STLNFTRINRINMGAYMCLADN--------------VPPQILIRN-RRVGVPIGRTATLE 390
           STL        N G Y C                   P        + V V  G+ A L 
Sbjct: 51  STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP 110

Query: 391 CEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450
           C +    L        +G         Y  S              I    + D +TY C 
Sbjct: 111 CLITDPALKDSVSLMREGGRQVLRKTVYFFS--PWRG------FIIRKAKVLDSNTYVCK 162

Query: 451 -SKNEVDIAKGSLILFESNAKTPVPT-EKEQEEVTV 484
              N  +     + L  +      P  + E  ++  
Sbjct: 163 TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 88.3 bits (218), Expect = 8e-19
 Identities = 29/179 (16%), Positives = 47/179 (26%), Gaps = 12/179 (6%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
                 V  GD+V LRC   G       W  +E +       K   + S  L    +   
Sbjct: 164 QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSD 222

Query: 357 -NMGAYMCLADN----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEF 405
            N     C A+N          V        +           +   V+  P     W F
Sbjct: 223 LNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF 282

Query: 406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
               L E   +     +           L ++     +   Y  ++ N    A  S++ 
Sbjct: 283 NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           P + ++     V +G    L C+VE   L    W   +    E          +      
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL---EQSATVMKSGGLPSLG-- 213

Query: 430 YIMQLNISNV-NISDFDTYRCISKNEVDIAKGSLIL 464
               L ++NV +  +     C ++N+V  A+ S+ +
Sbjct: 214 ----LTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 83.9 bits (207), Expect = 9e-19
 Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 41/188 (21%)

Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM-- 358
           ++ ++GD V L C A+        WK S    I            S LN    +R ++  
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 359 ----------------GAYMCLADNVPPQILIRNRRVGVP------IGRTATLECEVEAF 396
                             Y+C  ++   ++ +    +          G++ TL  E    
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 124

Query: 397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456
                      G  I+                     L++S + + D  T+ C       
Sbjct: 125 SSPSVQCRSPRGKNIQGGKT-----------------LSVSQLELQDSGTWTCTVLQNQK 167

Query: 457 IAKGSLIL 464
             +  + +
Sbjct: 168 KVEFKIDI 175

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI 353
            + ++S   + +G ++ L   +     PS+  ++   K I             TL+ +++
Sbjct: 100 GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------GGKTLSVSQL 150

Query: 354 NRINMGAYMCLADNVPPQI 372
              + G + C       ++
Sbjct: 151 ELQDSGTWTCTVLQNQKKV 169

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 84.9 bits (210), Expect = 1e-18
 Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 41/198 (20%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-- 343
            P I+  EH    + +VV++ +   L C   G P+P+I W   + +P++    K   V  
Sbjct: 9   SPRII--EHP---TDLVVKKNEPATLNCKVEGKPEPTIEWF-KDGEPVSTNEKKSHRVQF 62

Query: 344 ASSTLNFTRINRIN----MGAYMCLADN----------------VPPQILIRNRRVGVPI 383
               L F R  +       G Y C+A N                +     +  +   V  
Sbjct: 63  KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAK 122

Query: 384 GRTATLEC-EVEAFPLSVRYWEFIDGTLIEHDGVKYSISD-----VDKGSYQYIMQLNIS 437
           G TA LEC   +  P     W   DG  ++        +      VD G+      L IS
Sbjct: 123 GETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGN------LLIS 175

Query: 438 NVNISDFDTYRCISKNEV 455
           NV   D   Y+CI++N V
Sbjct: 176 NVEPIDEGNYKCIAQNLV 193

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 31/78 (39%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 136 RGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRG-PKGDMGYPGRIG 194
           +G  GA GV G PG  G  G  G  G  G  G  G  G PG  G  G   G  G  G  G
Sbjct: 2   KGADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGG 61

Query: 195 LDGRDGLPGEPGLDGIPG 212
             G+ G     G DG PG
Sbjct: 62  RGGKGGSGTPKGADGAPG 79

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 78.9 bits (195), Expect = 4e-18
 Identities = 29/79 (36%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 113 GLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQ 172
           G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  G  
Sbjct: 3   GADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVG--GAGGASGGTGVG 60

Query: 173 GIPGDEGKRGPKGDMGYPG 191
           G  G  G   PKG  G PG
Sbjct: 61  GRGGKGGSGTPKGADGAPG 79

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 77.8 bits (192), Expect = 8e-18
 Identities = 31/85 (36%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 121 KGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGK 180
           KG  GA G  G  G  G  G+ G  G  G  G  G  G  G  G +G  G     G  G 
Sbjct: 2   KGADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAG-----GASGG 56

Query: 181 RGPKGDMGYPGRIGLDGRDGLPGEP 205
            G  G  G  G     G DG PG P
Sbjct: 57  TGVGGRGGKGGSGTPKGADGAPGAP 81

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 75.9 bits (187), Expect = 4e-17
 Identities = 31/81 (38%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 131 GVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYP 190
           G  G  G  G PG  G  G  G PG +G  G  G  G PG  G  G  G  G  G  G  
Sbjct: 3   GADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAG--GASGGTGVG 60

Query: 191 GRIGLDGRDGLPGEPGLDGIP 211
           GR G  G     G  G  G P
Sbjct: 61  GRGGKGGSGTPKGADGAPGAP 81

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 188 GYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT----NGTNGEKGM 243
           G  G  G++G  G  G  G  G PG +G  G  G +G PG  G  G     +G  G  G 
Sbjct: 3   GADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGR 62

Query: 244 TGPRGNRGKSGINGVPGTP 262
            G  G+    G +G PG P
Sbjct: 63  GGKGGSGTPKGADGAPGAP 81

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 69.3 bits (170), Expect = 8e-15
 Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 167 GYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 226
           G  G  G+ G  G  G  G +G PG  G  G +G  G PG  G  G  G  G  G  G+ 
Sbjct: 3   GADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAG--GASGGTGVG 60

Query: 227 GKDGIPGTNGTNGEKGMTG 245
           G+ G  G+    G  G  G
Sbjct: 61  GRGGKGGSGTPKGADGAPG 79

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 87.1 bits (215), Expect = 1e-18
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 32/201 (15%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRC-VATGHPKPSIIWKTS---ENKPITLGSWK 339
           +  PT               ++   +   C  A G P   + W+T    E +   + +  
Sbjct: 128 MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN 187

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPI-G 384
            +    S          +  +  C+ +                 P++ I        +  
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247

Query: 385 RTATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD 443
               L C+ +A P +  Y W  ++G+L +    +                     +N S 
Sbjct: 248 MDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL------------FFKGPINYSL 295

Query: 444 FDTYRCISKNEVDIAKGSLIL 464
             TY C + N +    G + +
Sbjct: 296 AGTYICEATNPIGTRSGQVEV 316

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 30/217 (13%), Positives = 57/217 (26%), Gaps = 49/217 (22%)

Query: 292 SEHIFSSSPIVVREGDNVRLRCVATGHPKP----SIIW-KTSENKPITLG---------- 336
           S+ +  +  +    G +V L C             + W K++      +           
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 337 --------SWKDSAVASSTLNFTRINRINMGAYMCLADN---------------VPPQIL 373
                    +   +    T+  +R+   + G Y+C                     P   
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

Query: 374 IRNRRVGVPI-----GRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           I   +  +        +     C      P SV  WE       E+  ++     V   S
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                +  +     +   +  CI    +D  K SL L
Sbjct: 195 -----RYRLVPSREAHQQSLACIVNYHMDRFKESLTL 226

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 89.0 bits (220), Expect = 3e-18
 Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 56/237 (23%)

Query: 288 TIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK-------- 339
            +     I     +   E ++V L C A      ++ W     +P+ +   +        
Sbjct: 546 HVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605

Query: 340 -------------DSAVASSTLNFTRINRINMGAYMCLADN------------------V 368
                        +S      +     +  + G Y+CLA +                  V
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
            P I          IG +  + C     P   +  W   + TL+E  G+     +     
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIM-WFKDNETLVEDSGIVLKDGNR---- 720

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQEEV 482
                 L I  V   D   Y C + + +     +   I+  +       T  E+   
Sbjct: 721 -----NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA----QEKTNLERTHH 768

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 86.3 bits (213), Expect = 2e-17
 Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 37/229 (16%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
              S  L  P +   +       + ++    +++ C   G      +W  +++       
Sbjct: 23  GLPSVSLDLPRLSIQK-----DILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVE 75

Query: 338 WK--DSAVASSTLNFTRINRINMGAYMCLADN-------------------VPPQILIRN 376
                  +   TL   ++   + GAY C                                
Sbjct: 76  VTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGV 135

Query: 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI 436
             +     +T  + C      L+V             DG + S  D  KG         I
Sbjct: 136 VYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKG-------FTI 187

Query: 437 SNVNISDFDTYRCISKNEVDIAKGSLILF-ESNAKTPVPTEKEQEEVTV 484
            +  IS      C +K   +  +  + +      +           + +
Sbjct: 188 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 236

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 84.8 bits (209), Expect = 6e-17
 Identities = 27/220 (12%), Positives = 49/220 (22%), Gaps = 21/220 (9%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P I           I   +   V + C+ +       +      K       + S  + 
Sbjct: 123 SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK 182

Query: 346 STLNFTRINRINMGAYMCLADN------------------VPPQILIRNRRVGVPIGRTA 387
                        G   C A                    +   +L  +  + + +G   
Sbjct: 183 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242

Query: 388 TLECEVEAFPLSVRYWE-FIDGTLIEHDGVKYSISDVDKGSYQYIMQ--LNISNVNISDF 444
            L C           +      +  +H  +         GS        L I  V  SD 
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302

Query: 445 DTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
             Y C + + +   K S  +              +  V  
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 82.1 bits (202), Expect = 4e-16
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 40/189 (21%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWK-----------TSENKPITLGSWKDSAV 343
           +  S  I +  G+ + L C A       I +               N+ +   S  +   
Sbjct: 228 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 287

Query: 344 ASSTLNFTRINRINMGAYMCLADN--------------VPPQILI---RNRRVGVPIGRT 386
             STL    + R + G Y C A +                P +         V   +G  
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGER 347

Query: 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
             +  +   +P     W   +G  +E              + +    L I  V+  D   
Sbjct: 348 VRIPAKYLGYPPPEIKWYK-NGIPLE-----------SNHTIKAGHVLTIMEVSERDTGN 395

Query: 447 YRCISKNEV 455
           Y  I  N +
Sbjct: 396 YTVILTNPI 404

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.0 bits (194), Expect = 4e-15
 Identities = 40/260 (15%), Positives = 70/260 (26%), Gaps = 59/260 (22%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P +     +   S +    G+ VR+     G+P P I W      P+       +  A 
Sbjct: 327 KPFVAFGSGM--ESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPL---ESNHTIKAG 380

Query: 346 STLNFTRINRINMGAYMCLADN----------------VPPQIL---IRNRRVGVPIGRT 386
             L    ++  + G Y  +  N                VPPQI    + +       G T
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440

Query: 387 ATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ------------ 433
            TL C V A P      W +       ++  +           ++               
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500

Query: 434 --------------LNISNVNISDFDTYRCISKNEVDIAKGSLILF----ESNAKTPVPT 475
                           +     +    Y+C + N+V   +  +             P   
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQ 560

Query: 476 EKEQEEVTVYNRA---PKPE 492
             EQE V+++  A       
Sbjct: 561 PTEQESVSLWCTADRSTFEN 580

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 72.1 bits (176), Expect = 5e-13
 Identities = 32/262 (12%), Positives = 64/262 (24%), Gaps = 66/262 (25%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSII-W--------KTSENKPITLG 336
           PP I        S     + G    L C     P P  I W            ++ +++ 
Sbjct: 420 PPQIGEKS--LISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477

Query: 337 SWKDSAVASSTLNFTRINRINM--------------------------GAYMCLADN--- 367
           +        S  +F   N+I +                            Y C A N   
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537

Query: 368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV 416
                        P+I +    +      + +L C  +        W  +    +     
Sbjct: 538 RGERVISFHVTRGPEITL-QPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVG 596

Query: 417 KYSISDVD-------------KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463
           +                      S   I+ + + N ++ D   Y C++++     +  ++
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV 656

Query: 464 L-FESNAKTPVPTEKEQEEVTV 484
                  +         E  T 
Sbjct: 657 RQLTVLERVAPTITGNLENQTT 678

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 86.7 bits (214), Expect = 5e-18
 Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 24/220 (10%)

Query: 280 TSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK 339
              +L   +I  +       P   +  +   L C++   P+P + W   +++  +     
Sbjct: 128 NYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES 187

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADN-------------VPPQILIRNRRVGVPIGRT 386
            + V         ++ +      C A N             +         ++ + +G  
Sbjct: 188 PAVVKKEEKV---LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244

Query: 387 ATLECEVEA--FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF 444
             + C+         +  WE  +   +E        +     +   I+   +S+V  +D 
Sbjct: 245 LWIRCKAVHVNHGFGLT-WEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302

Query: 445 DTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
             Y C S            L     K  +      E+  +
Sbjct: 303 GYYTCSSSKHP----SQSALVTIVEKGFINATNSSEDYEI 338

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 86.3 bits (213), Expect = 6e-18
 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 34/192 (17%)

Query: 295 IFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKD--------SAVAS 345
             +   + ++ G+ + +RC A   +    + W+  ENK +  G++ +        + +  
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRI 289

Query: 346 STLNFTRINRINMGAYMCLADN-----------VPPQILI--RNRRVGVPIGRTATLECE 392
                + + R + G Y C +                 I     +    +           
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349

Query: 393 VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452
            +A+P     W F   +             +D G       ++    +      Y   ++
Sbjct: 350 FKAYPQIRCTWTFSRKSFPC------EQKGLDNGY-----SISKFCNHKHQPGEYIFHAE 398

Query: 453 NEVDIAKGSLIL 464
           N+         L
Sbjct: 399 NDDAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 86.3 bits (213), Expect = 7e-18
 Identities = 20/214 (9%), Positives = 57/214 (26%), Gaps = 30/214 (14%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
                  S  ++ ++ + V    ++ L+ +       S +W    +       +      
Sbjct: 42  CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG 101

Query: 345 SSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLE 390
             ++   ++     G Y+    +                    +R       +     L 
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYF-RKMENQDALV 160

Query: 391 CEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450
           C  E+ P  +  W   D           ++   +        +  +  +  +D    RC 
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKE--------EKVLHELFGTD---IRCC 209

Query: 451 SKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
           ++NE+      L   +         +    ++ +
Sbjct: 210 ARNELGRECTRLFTID----LNQTPQTTLPQLFL 239

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 278 SETSQLLI--PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL 335
           S+++ + I     I  +    SS    + + +          +P+    W     K    
Sbjct: 314 SQSALVTIVEKGFINATN---SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPC 369

Query: 336 GSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
              +       +++    ++   G Y+  A+N
Sbjct: 370 E--QKGLDNGYSISKFCNHKHQPGEYIFHAEN 399

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 80.5 bits (198), Expect = 2e-17
 Identities = 30/199 (15%), Positives = 53/199 (26%), Gaps = 38/199 (19%)

Query: 301 IVVREGDNVRLRCVA---TGHPKPSIIW--KTSENKPITLGSWKDSAVAS---------- 345
           +    G+ V L       +  P+  + W       + + +G      +            
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 346 ------STLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGR 385
                   L  T  N  + G Y+C                   P  + + + R   P   
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFS 120

Query: 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
             T+ C V AFP     W   +G           +     GS          ++      
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS---VAVDLSLPKPWHL 177

Query: 446 TYRCISKNEVDIAKGSLIL 464
              C+ KN+ + A G  + 
Sbjct: 178 PVTCVGKNDKEEAHGVYVS 196

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 82.1 bits (202), Expect = 4e-17
 Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 43/205 (20%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPI-----TLGS 337
           L  P             + +        RCV+T G P   I W + +   +       G 
Sbjct: 115 LAKPQNT-----AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGMPNTSQVPGF 168

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN----------------VPPQILIRNR-RVG 380
              +   +S       ++++     C  ++                 PP++ I       
Sbjct: 169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW 228

Query: 381 VPIGRTATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV 439
                 ATL C+  + P    Y W    G L      + +             QL I  V
Sbjct: 229 YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGA-------------QLLIRPV 275

Query: 440 NISDFDTYRCISKNEVDIAKGSLIL 464
           +     T  C   N +   +  L +
Sbjct: 276 DKPINTTLICNVTNALGARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 24/197 (12%), Positives = 47/197 (23%), Gaps = 44/197 (22%)

Query: 299 SPIVVREGDNVRLRCVATGHPKP-----SIIW-KTSENKPITLGSWKDSAVAS------- 345
           + +    GD+V L C              + W +  E+  + +         S       
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67

Query: 346 -----------STLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRV 379
                      ++L    +   + G Y CL                    PQ     ++V
Sbjct: 68  VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127

Query: 380 GVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
            +         C      P +   W   D   + +            G+        +  
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITW-HSDLGGMPNTSQVPGFLS---GTVTVTSLWILVP 183

Query: 439 VNISDFDTYRCISKNEV 455
            +  D     C  ++E 
Sbjct: 184 SSQVDGKNVTCKVEHES 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 79.5 bits (196), Expect = 5e-17
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 38/193 (19%)

Query: 299 SPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAV--ASSTLNFTRINR 355
             + V+EG  + L C    H P            P+ +   K   V   +  L    +  
Sbjct: 16  PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEA 75

Query: 356 INMGAYMCLADN------------------------VPPQILIRNRRVGVPIGRTATLEC 391
            + G Y C   +                         P  I+++ + V   +G+  TLEC
Sbjct: 76  SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLEC 135

Query: 392 EVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451
                P+    W  +   +      + S S            L I N+ + D   Y C +
Sbjct: 136 FALGNPVPDIRWRKVLEPM--PSTAEISTSG---------AVLKIFNIQLEDEGIYECEA 184

Query: 452 KNEVDIAKGSLIL 464
           +N     K    +
Sbjct: 185 ENIRGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 274 LLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPI 333
           L+P  E +    P  IV          +    G NV L C A G+P P I W     +P+
Sbjct: 101 LIPIPERTTKPYPADIVVQF-----KDVYALMGQNVTLECFALGNPVPDIRW-RKVLEPM 154

Query: 334 TLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
              +  + + + + L    I   + G Y C A+N
Sbjct: 155 PSTA--EISTSGAVLKIFNIQLEDEGIYECEAEN 186

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 11/91 (12%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAF---PLSVRYWEFIDGTLIEHDGVKYSISDVD 424
           + P        V V  G+   L C+        LS   W   +   +     K       
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSY-RWLL-NEFPVFITMDKRRFVSQT 64

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
            G+      L I+NV  SD   Y C   +  
Sbjct: 65  NGN------LYIANVEASDKGNYSCFVSSPS 89

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 82.9 bits (204), Expect = 5e-17
 Identities = 29/208 (13%), Positives = 58/208 (27%), Gaps = 41/208 (19%)

Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM-- 358
           ++ ++GD V L C A+        WK S    I            S LN    +R ++  
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 359 ----------------GAYMCLADNVPPQILIRNRRVGVP------IGRTATLECEVEAF 396
                             Y+C  ++   ++ +    +          G++ TL  E    
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 123

Query: 397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456
                      G  I+                     L++S + + D  T+ C       
Sbjct: 124 SSPSVQCRSPRGKNIQGGKT-----------------LSVSQLELQDSGTWTCTVLQNQK 166

Query: 457 IAKGSLILFESNAKTPVPTEKEQEEVTV 484
             +  + +     +       ++E   V
Sbjct: 167 KVEFKIDIVVLAFQKASSIVYKKEGEQV 194

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 77.5 bits (190), Expect = 3e-15
 Identities = 20/200 (10%), Positives = 52/200 (26%), Gaps = 38/200 (19%)

Query: 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI 353
            + ++S   + +G ++ L   +     PS+  ++   K I             TL+ +++
Sbjct: 99  GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------GGKTLSVSQL 149

Query: 354 NRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL 398
              + G + C                         I  ++ G  +  +  L   VE    
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG 209

Query: 399 SVRYWEFIDGTLIEHDGVKYSISD--------------VDKGSYQYIMQLNISNVNISDF 444
           S   W   +        + + + +                       + L  +    +  
Sbjct: 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS 269

Query: 445 DTYRCISKNEVDIAKGSLIL 464
                  + +       + L
Sbjct: 270 GNLTLALEAKTGKLHQEVNL 289

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 84.4 bits (208), Expect = 5e-17
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 22/219 (10%)

Query: 280 TSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK 339
              +L   +I  +       P   +  +   L C++   P+P + W    +        +
Sbjct: 128 NYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW-VLCDSQGESCKEE 186

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADN-------------VPPQILIRNRRVGVPIGRT 386
             AV            +      C A N             +         ++ + +G  
Sbjct: 187 SPAVVKKEEKVLH--ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244

Query: 387 ATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
             + C+           WE  +   +E        +     +   I+   +S+V  +D  
Sbjct: 245 LWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303

Query: 446 TYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
            Y C S            L     K  +      E+  +
Sbjct: 304 YYTCSSSKHP----SQSALVTIVEKGFINATNSSEDYEI 338

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 83.2 bits (205), Expect = 1e-16
 Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 38/227 (16%)

Query: 278 SETSQLLI--PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL 335
           S+++ + I     I  +    SS    + + +          +P+    W     K    
Sbjct: 314 SQSALVTIVEKGFINATN---SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPC 369

Query: 336 GSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGV 381
                      +++    ++   G Y+  A+N                PQ+L        
Sbjct: 370 EQ--KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE------ 421

Query: 382 PIGRTATLECEVEAFPLSVRYWEFIDG------TLIEHDGVKYSISDVDKGSYQYIMQLN 435
                +   C  + +PL    W+            I         +    G +     LN
Sbjct: 422 --ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLN 479

Query: 436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEV 482
           +S          +C + N +  +  +++L        +     +   
Sbjct: 480 MSEAI--KGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 79.4 bits (195), Expect = 2e-15
 Identities = 21/193 (10%), Positives = 54/193 (27%), Gaps = 28/193 (14%)

Query: 277 NSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG 336
           + E     + P    S  ++ ++ + V    ++ L+ +       S +W    +      
Sbjct: 36  SPEDLGCALRPQ--SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP 93

Query: 337 SWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVP 382
            +        ++   ++     G Y+    +                    +R       
Sbjct: 94  HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYF-RK 152

Query: 383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS 442
           +     L C  E+ P  +  W   D              +  K     +++     ++  
Sbjct: 153 MENQDALVCISESVPEPIVEWVLCDSQG-----------ESCKEESPAVVKKEEKVLHEL 201

Query: 443 DFDTYRCISKNEV 455
                RC ++NE+
Sbjct: 202 FGTDIRCCARNEL 214

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 28/174 (16%)

Query: 339 KDSAVASSTLNFTRINRINM---GAYMCLADNV----------PPQILIRNRRVGVPIGR 385
           +D  V    L   + N  ++    +Y  ++++               +     V V +  
Sbjct: 5   QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA 64

Query: 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
           + TL+  V+A       W F             +         + ++ + I  +  +   
Sbjct: 65  SITLQVLVDAPGNISCLWVF--------KHSSLNCQPHFDLQNRGVVSMVILKMTETQAG 116

Query: 446 TYRCISKNEVDIAKGSLILFESNAKTPV----PTEKEQEEVTVYNRA---PKPE 492
            Y    ++E         +   N            K + +  +   +   P+P 
Sbjct: 117 EYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPI 170

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 80.0 bits (197), Expect = 6e-17
 Identities = 35/153 (22%), Positives = 41/153 (26%), Gaps = 3/153 (1%)

Query: 112 PGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGP 171
           P    P G  G  G  G  G  G  G  G  G  GP GP G  G  G  G  G  G  GP
Sbjct: 16  PPFTLPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGP 75

Query: 172 QGIPGDEGKRGPKGDMGYPGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGK 228
            G  G     G          + L   D +P             +   D     +    K
Sbjct: 76  TGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYK 135

Query: 229 DGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGT 261
             +     T    G    + N       G    
Sbjct: 136 ITVIANTATASVLGGLTIQVNGVPVPGTGSSLI 168

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 77.3 bits (190), Expect = 4e-16
 Identities = 29/151 (19%), Positives = 37/151 (24%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G  G  G  G+ G  G  G  GP GP G  G  G  GP G  G  G
Sbjct: 21  PTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSG 80

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
                G          +       +                  +                
Sbjct: 81  LGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIA 140

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGT 261
              T    G   +         +G + +   
Sbjct: 141 NTATASVLGGLTIQVNGVPVPGTGSSLISLG 171

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 33/154 (21%), Positives = 39/154 (25%), Gaps = 4/154 (2%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
            P L GP             G  G  G  G  G  GP GP G  G  G   P G  G  G
Sbjct: 4   DPNLVGPTLPPI-PPFTLPTGPTGPTGPTGPTGPTGPTGPTGDTGTTG---PTGPTGPTG 59

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
           P G  G  G  GP G  G  G     G            +   + +              
Sbjct: 60  PTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAIS 119

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAI 264
               +     +           +    V G   I
Sbjct: 120 QLDADTFVISETGFYKITVIANTATASVLGGLTI 153

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 28/151 (18%), Positives = 35/151 (23%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G  G+ G  G  G  G  G  GP G  G+ G  G  GP G     G
Sbjct: 27  PTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAG 86

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
                          +   P             +   D                      
Sbjct: 87  LYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATAS 146

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGT 261
           + G              G+   S    +   
Sbjct: 147 VLGGLTIQVNGVPVPGTGSSLISLGAPIVIQ 177

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 33/124 (26%), Positives = 36/124 (29%), Gaps = 4/124 (3%)

Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRD 199
             P +VGP  P   P      GP G     GP G  G  G  GP GD G  G  G  G  
Sbjct: 3   FDPNLVGPTLPPI-PPFTLPTGPTGPT---GPTGPTGPTGPTGPTGDTGTTGPTGPTGPT 58

Query: 200 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVP 259
           G  G  G  G+ G  G  G  G     G         +           N   S      
Sbjct: 59  GPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAI 118

Query: 260 GTPA 263
               
Sbjct: 119 SQLD 122

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 25/153 (16%), Positives = 35/153 (22%), Gaps = 3/153 (1%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGY-- 168
           P G  GP G  G+ G  G  G  G  G  G  G  G  GP G  G  G   P G   +  
Sbjct: 33  PTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNS 92

Query: 169 -PGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
                 +  ++          +   I     D                        G   
Sbjct: 93  GGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLGGLT 152

Query: 228 KDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
                      G   ++       ++       
Sbjct: 153 IQVNGVPVPGTGSSLISLGAPIVIQAITQITTT 185

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 64.6 bits (157), Expect = 9e-12
 Identities = 25/151 (16%), Positives = 27/151 (17%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G  G  G  G  G  G  G  G  G  G  G  G  G     G   
Sbjct: 30  PTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYA 89

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
                                                           +          G
Sbjct: 90  FNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLG 149

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGT 261
                        TG       + I     T
Sbjct: 150 GLTIQVNGVPVPGTGSSLISLGAPIVIQAIT 180

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 27/165 (16%), Positives = 37/165 (22%), Gaps = 12/165 (7%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  G  G  G  G  G  G  G  G  G  G  GP G     G          +    
Sbjct: 42  PTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGI 101

Query: 171 PQGIPGDEGKRGPKGDMGYPG------------RIGLDGRDGLPGEPGLDGIPGRNGMDG 218
              +P +         +                +I +          G   I        
Sbjct: 102 NDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVP 161

Query: 219 IPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPA 263
             G   +     I     T      +         G++   GT A
Sbjct: 162 GTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSA 206

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 20/154 (12%), Positives = 30/154 (19%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           P G  GP G  G  G  G  G  G     G            +  ++          +  
Sbjct: 57  PTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGT 116

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
                  +     +        I       + G   +          G            
Sbjct: 117 AISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIVI 176

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAI 264
              T  T     +       G S   G   +  I
Sbjct: 177 QAITQITTTPSLVEVIVTGLGLSLALGTSASIII 210

>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 19/154 (12%), Positives = 28/154 (18%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
             G  GP G  G  G  G  G  G  G  G  G  G   P G+                 
Sbjct: 45  DTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDP 104

Query: 171 PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 230
                           +     +  +                  G   I          G
Sbjct: 105 VPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTG 164

Query: 231 IPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAI 264
               +           +     S +  +     +
Sbjct: 165 SSLISLGAPIVIQAITQITTTPSLVEVIVTGLGL 198

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 78.3 bits (192), Expect = 2e-16
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 20/196 (10%)

Query: 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI 353
                S  + + GD+V L C  TG   P   W+T  + P  L     +   +STL    +
Sbjct: 4   ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSP--LNGKVTNEGTTSTLTMNPV 61

Query: 354 NRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVE-AFPL 398
           +  N  +Y+C A                  P+    +    +  G+  T++C V   +P 
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPF 121

Query: 399 SVRYWE-FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
                +      L++    ++      K      +++  + V         C +K  +D 
Sbjct: 122 DRLEIDLLKGDHLMKS--QEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 458 AKGSLILFESNAKTPV 473
                 + ++  +  V
Sbjct: 180 MDSVPTVRQAVKELQV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 34/196 (17%)

Query: 296 FSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK----DSAVASSTLN 349
           F      + VR   N  L C  TGHPKP + W   + K I     K    +       L 
Sbjct: 7   FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWY-RQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 350 FTRINRINMGAYMCLADNV-------------------PPQILIRNRRVGVPIGRTATLE 390
              +   +   Y   A N                     P+ L     V    G   +++
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125

Query: 391 CEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
                 P   +  W+     LI+++G  Y +      +      +  + V   D   Y  
Sbjct: 126 IPFSGKPDPVIT-WQK-GQDLIDNNG-HYQVIVTRSFTS----LVFPNGVERKDAGFYVV 178

Query: 450 ISKNEVDIAKGSLILF 465
            +KN   I + ++ L 
Sbjct: 179 CAKNRFGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           + P      R + V     ATL C+V   P  +  W +  G  I  DG+KY I +   G 
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIADGLKYRIQEFKGGY 61

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQEEVTVY 485
           +    QL I++V   D   Y+  + N+        SL +          T +    V   
Sbjct: 62  H----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           +P  I   + +     +    G+ V ++   +G P P I W       I         V 
Sbjct: 98  VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW-QKGQDLIDNNGHYQVIVT 156

Query: 345 SSTLNFTRINRINM---GAYMCLADN 367
            S  +    N +     G Y+  A N
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKN 182

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 41/188 (21%)

Query: 296 FSSSP--IVVREGDNVRLRC-VATGHPKPSIIWK----------TSENKPITLGSWKDSA 342
           F  +P  I    G    LRC +      P + W           +++ +       +D  
Sbjct: 5   FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64

Query: 343 VASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTA 387
           +  S L  T +   + G Y CL                    P  L       V      
Sbjct: 65  IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124

Query: 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447
            L C+ +  P  V      D   +                     Q ++    ++   ++
Sbjct: 125 NLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-------------QRSLHVPGLNKTSSF 171

Query: 448 RCISKNEV 455
            C + N  
Sbjct: 172 SCEAHNAK 179

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 19/97 (19%)

Query: 296 FSSSP--IVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTR 352
           F   P    V       L C A G P+P  ++W   +  P+             +L+   
Sbjct: 109 FLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATA---PGHGPQRSLHVPG 164

Query: 353 INRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL 389
           +N     ++ C A N            GV   RTAT+
Sbjct: 165 LN--KTSSFSCEAHN----------AKGVTTSRTATI 189

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEA--FPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
               +     +    G T TL C+++    P  V  W      L   D  +  +   +  
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVH-WLRDGQILELADSTQTQVPLGEDE 60

Query: 427 SYQYIM--QLNISNVNISDFDTYRCISKNEV 455
              +I+  QL I+++ +SD   Y+C+     
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGH 91

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 79.0 bits (194), Expect = 5e-16
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 40/200 (20%)

Query: 302 VVREGDNVRLRC------VATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR 355
            +    +  L C          +  P + W   + KP+ L +    +     L    +  
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLLDNIH-FSGVKDRLIVMNVAE 171

Query: 356 INMGAYMCLADN-----------------------VPPQIL-IRNRRVGVPIGRTATLEC 391
            + G Y C A                           P I+   N  + V +G    L C
Sbjct: 172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC 231

Query: 392 EVEAFPLSVRYWEFIDGTLIEHDGV------KYSISDVDKGSYQYIMQLNISNVNISDFD 445
            V      + YW   +G++I+ D            +  +K     I  LNIS +    + 
Sbjct: 232 NVTGQLSDIAYW-KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYK 290

Query: 446 -TYRCISKNEVDIAKGSLIL 464
             + C +KN   I    + L
Sbjct: 291 HPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 67.8 bits (165), Expect = 2e-12
 Identities = 35/217 (16%), Positives = 58/217 (26%), Gaps = 43/217 (19%)

Query: 301 IVVREGDNVRLRCVATGHP-KPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           +V    +     C    +  K +I W K     P++             L F      + 
Sbjct: 15  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74

Query: 359 GAYMCLADN--------------VPPQILIRNRRVG----VPIGRTATLEC------EVE 394
           G Y C+  N                   L  N +      +P+     L C      + E
Sbjct: 75  GHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE 134

Query: 395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
              L    W + D   +  D + +S             +L + NV       Y C +   
Sbjct: 135 NNELPKLQW-YKDCKPLLLDNIHFSGVK---------DRLIVMNVAEKHRGNYTCHASYT 184

Query: 455 VDIAKGS-------LILFESNAKTPVPTEKEQEEVTV 484
               +         + L E+    PV      E + V
Sbjct: 185 YLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV 221

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 18/97 (18%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWK-------------TSENK 331
             P IV      ++  + V  G  ++L C  TG       WK               +  
Sbjct: 207 TRPVIVSP----ANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYY 262

Query: 332 PITLGSWKDSAVASSTLNFTRINRINM-GAYMCLADN 367
            +   + K  +   + LN + I        + C A N
Sbjct: 263 SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 78.6 bits (193), Expect = 6e-16
 Identities = 25/182 (13%), Positives = 47/182 (25%), Gaps = 28/182 (15%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
               I + E   + + C  T  P+  +     +        +           F+ I   
Sbjct: 101 EELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPY------DHQRGFSGIF-- 151

Query: 357 NMGAYMCLADNV-----------------PPQILIRNRRVGVPIGRTATLECEVEAFPLS 399
              +Y+C                         + +   +  V  G   TL C V    + 
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV 211

Query: 400 VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK 459
              W +          V+     +    Y     L+I +  + D  TY C     V+  +
Sbjct: 212 NFEWTYPRKE--SGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269

Query: 460 GS 461
             
Sbjct: 270 DE 271

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 63.2 bits (153), Expect = 8e-11
 Identities = 27/209 (12%), Positives = 51/209 (24%), Gaps = 42/209 (20%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
               +V+       L C  +      ++W+    +P    +       SS L  T +  +
Sbjct: 6   PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61

Query: 357 NMGAYMCLADN-----------------VPPQILIRN----RRVGVPIGRTATLECEVEA 395
           + G Y C  ++                  P    + N      + +      T+ C V  
Sbjct: 62  DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD 121

Query: 396 FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
             L V        TL E  G           +             I +  +Y C +    
Sbjct: 122 PQLVV--------TLHEKKG---------DVALPVPYDHQRGFSGIFEDRSYICKTTIGD 164

Query: 456 DIAKGSLILFESNAKTPVPTEKEQEEVTV 484
                          + +       +  V
Sbjct: 165 REVDSDAYYVYRLQVSSINVSVNAVQTVV 193

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 78.2 bits (192), Expect = 1e-15
 Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 40/208 (19%)

Query: 296 FSSSPIVVREGDNVRLRCV-----ATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLN 349
           F S P ++    +  L C              I W   ++  +   + K  +V  ++ L 
Sbjct: 125 FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW-YKDSLLLDKDNEKFLSVRGTTHLL 183

Query: 350 FTRINRINMGAYMCLADN-----------------------VPPQILIRNRRVGVPIGRT 386
              +   + G Y C+                            P I+   + +   +G  
Sbjct: 184 VHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243

Query: 387 ATLECEVEAF---PLSVRYWEFIDGTLIEHDGVKYSISDVDK------GSYQYIMQLNIS 437
            T+ C+V      PL+   W   + T IE       +++  +            + L   
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303

Query: 438 NVNISDFDT-YRCISKNEVDIAKGSLIL 464
            V   D    ++C+  N +        +
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 73.6 bits (180), Expect = 4e-14
 Identities = 32/213 (15%), Positives = 58/213 (27%), Gaps = 39/213 (18%)

Query: 280 TSQLLIPPTIVGSEHIFSSSP--IVVREGDNVRLRC-------VATGHPKPSIIW-KTSE 329
           T Q         S              EG+ V LRC        A+  P+ ++ W K   
Sbjct: 5   TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64

Query: 330 NKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIR 375
            + +              L      + + G Y+C   N                    + 
Sbjct: 65  ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP 124

Query: 376 NRRVG--VPIGRTATLECE-----VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
                  + +  +  L C                W + D  L++ D  K+ +S       
Sbjct: 125 FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW-YKDSLLLDKDNEKF-LSVRGTTH- 181

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461
                L + +V + D   YRC+     +  + +
Sbjct: 182 -----LLVHDVALEDAGYYRCVLTFAHEGQQYN 209

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 75.3 bits (185), Expect = 4e-15
 Identities = 33/190 (17%), Positives = 51/190 (26%), Gaps = 38/190 (20%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           I   I     +   S  V  EG+ + LRC A        +      K             
Sbjct: 76  IQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF------KFFHW 129

Query: 345 SSTLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTAT 388
           +S L   + N  + G Y C                     P  +L  +    +  G   T
Sbjct: 130 NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVT 189

Query: 389 LECEVEAFPLSVR---YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445
           L CE +          Y+ F  G+         ++   +  S     +  I      D  
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGS--------KTLRGRNTSS-----EYQILTARREDSG 236

Query: 446 TYRCISKNEV 455
            Y C +  E 
Sbjct: 237 LYWCEAATED 246

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 25/183 (13%), Positives = 46/183 (25%), Gaps = 35/183 (19%)

Query: 295 IFSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTR 352
           + +  P  + V + + V L C     P  S                     ++ +   T 
Sbjct: 3   VITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ--------TSTPSYRITS 54

Query: 353 INRINMGAYMCLADN-----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR 401
            +  + G Y C                   +L++        G    L C      L   
Sbjct: 55  ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYN 114

Query: 402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461
              + +G   +               + +   L I   NIS   TY C    +       
Sbjct: 115 VLYYRNGKAFK--------------FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAG 160

Query: 462 LIL 464
           + +
Sbjct: 161 ISV 163

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI 353
           + +S    + EG+ V L C       +P +    S          +++   SS       
Sbjct: 174 LNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT---SSEYQILTA 230

Query: 354 NRINMGAYMCLADNVPPQI 372
            R + G Y C A      +
Sbjct: 231 RREDSGLYWCEAATEDGNV 249

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 74.9 bits (183), Expect = 2e-14
 Identities = 36/197 (18%), Positives = 57/197 (28%), Gaps = 33/197 (16%)

Query: 297 SSSPIVVREGDNVRLRC-VATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR 355
            +  +   +   + L C +       +I W    N+ + +   K S  +   L       
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYK-NNQELIIDGTKYS-QSGQNLIIHNPEL 191

Query: 356 INMGAYMCLADN-----------------------VPPQILIRNRRVGVPIGRTATLECE 392
            + G Y C                                LI + ++ V IG  A + C 
Sbjct: 192 EDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCT 251

Query: 393 VEAFPLSVR----YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF-DTY 447
             +  L V      WE   G +I  D   YSI     G  +    L   NV      +TY
Sbjct: 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT--LYFENVTEEYIGNTY 309

Query: 448 RCISKNEVDIAKGSLIL 464
            C   N       +  +
Sbjct: 310 TCRGHNYYFDKTLTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 70.2 bits (171), Expect = 5e-13
 Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 39/242 (16%)

Query: 277 NSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG 336
            ++ S+ L P  + G          +   G+    +C        S   + ++   +   
Sbjct: 20  PAKDSKWLNPSCMFGGT-----MNDMAALGEPFSAKCPPIEDSLLS--HRYNDKDNVVNW 72

Query: 337 SWKDSAVASS-------TLNFTRINRINMGA-YMCLADN---------------VPPQIL 373
                             L        +    Y+C                    PP  +
Sbjct: 73  EKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI 132

Query: 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433
                +G        L C +           + +   +  DG KYS S            
Sbjct: 133 PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG---------QN 183

Query: 434 LNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEG 493
           L I N  + D   Y C    +    K  +++      T +P++  + ++ +  +     G
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243

Query: 494 QD 495
           + 
Sbjct: 244 EP 245

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 11/101 (10%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKP----SIIWKTSENKPI 333
           S    L + P+      +     I V  G+   + C A           I W+      I
Sbjct: 215 SRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWII 274

Query: 334 TLGSWK------DSAVASSTLNFTRINRINMGA-YMCLADN 367
            L             +  +TL F  +    +G  Y C   N
Sbjct: 275 GLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHN 315

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 70.3 bits (172), Expect = 4e-14
 Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 33/172 (19%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
             +     + +G+NV L C      + S                      +S+LN     
Sbjct: 8   SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ETNSSLNIVNAK 59

Query: 355 RINMGAYMCLADN-----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYW 403
             + G Y C                   +L++     V  G+   L C         +  
Sbjct: 60  FEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVI 119

Query: 404 EFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
            + DG  +++           +        ++I+N  + D  TY C  K   
Sbjct: 120 YYKDGEALKYWY---------ENH-----NISITNATVEDSGTYYCTGKVWQ 157

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 277 NSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG 336
               S+ +    +     +  +S  VV EG  + LRC    +     +    + + +   
Sbjct: 72  QVNESEPVYL-EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL--- 127

Query: 337 SWKDSAVASSTLNFTRINRINMGAYMCLADN 367
                   +  ++ T     + G Y C    
Sbjct: 128 ---KYWYENHNISITNATVEDSGTYYCTGKV 155

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 18/88 (20%)

Query: 368 VP--PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK 425
           VP  P++ +      +  G   TL C    F        F +G+L E             
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKN 453
                   LNI N    D   Y+C  + 
Sbjct: 53  --------LNIVNAKFEDSGEYKCQHQQ 72

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 27/233 (11%), Positives = 64/233 (27%), Gaps = 39/233 (16%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSA 342
              P  V  E++       V    NV L+C       +  I+W   + + I++    D  
Sbjct: 5   FTGPHFV--EYL----SWEVTGECNVLLKCKVANIKKETHIVW-YKDEREISVDEKHDFK 57

Query: 343 VASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTAT 388
               TL  T  ++ + G Y  +  +                 ++++   +          
Sbjct: 58  DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLK 117

Query: 389 LECEVEAFPLSVR----------YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
           ++   E   L              W   +G+ I +   +       +        L I+ 
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNW-SHNGSAIRYSD-RVKTGVTGEQI-----WLQINE 170

Query: 439 VNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKP 491
              +D   Y     +     + ++ L            +  ++  +  +    
Sbjct: 171 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 223

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 24/222 (10%), Positives = 51/222 (22%), Gaps = 54/222 (24%)

Query: 290 VGSEHIFSSSPIVVREGDNVRLRCVATG----------HPKPSIIWKTSENKPITLGSWK 339
              E +      +     +++++  A G               + W +     I      
Sbjct: 97  AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW-SHNGSAIRYSDRV 155

Query: 340 DSAVA--SSTLNFTRINRINMGAYMCLADN------------------------------ 367
            + V      L        + G Y+    +                              
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215

Query: 368 -----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISD 422
                    +      V +  G+   L C V   P     W   +   +  D       +
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW-LKNEKALASDDHCNLKFE 274

Query: 423 VDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
             + +Y       I+ V+ +D   Y  + KN+         +
Sbjct: 275 AGRTAY-----FTINGVSTADSGKYGLVVKNKYGSETSDFTV 311

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 70.1 bits (171), Expect = 1e-13
 Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 53/214 (24%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKP----SIIWKTSENKPI----------------- 333
                 I   +G+   L C  T  P+      I W  S +                    
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 334 --------TLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------VPPQ 371
                      +  D     +++N T +   ++G Y C                  V P 
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123

Query: 372 ILIRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQY 430
                      IG    L+CE +         W+ +  +          ++++       
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP---WLAEMTSPV--- 177

Query: 431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
              +++ N +     TY C  +N V   +  L L
Sbjct: 178 ---ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSA 342
           L+ P+                 G++ +L+C    G       W+   +       W  + 
Sbjct: 119 LVKPSG-----TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL-AE 172

Query: 343 VASSTLNFTRINRINMGAYMCLADN 367
           + S  ++    +    G Y C   N
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQN 197

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 25/201 (12%), Positives = 48/201 (23%), Gaps = 23/201 (11%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD-SAVA 344
            P I           I   +   V + C+ +     ++       +   +      S  +
Sbjct: 4   SPFIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDS 62

Query: 345 SSTLNFTRINRINMGAYMCLADN------------------VPPQILIRNRRVGVPIGRT 386
                         G   C A                    +   +L  +  + + +G  
Sbjct: 63  KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEK 122

Query: 387 ATLECEVEAFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM-QLNISNVNISD 443
             L C             WE+          V   +        +  +  L I  V  SD
Sbjct: 123 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSD 182

Query: 444 FDTYRCISKNEVDIAKGSLIL 464
              Y C + + +   K S  +
Sbjct: 183 QGLYTCAASSGLMTKKNSTFV 203

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 277 NSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW----------- 325
            S    +++    +    +  S  I +  G+ + L C A       I +           
Sbjct: 91  QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQH 150

Query: 326 KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
           K   N+ +   S  +     STL    + R + G Y C A +
Sbjct: 151 KKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 67.2 bits (164), Expect = 5e-13
 Identities = 23/172 (13%), Positives = 39/172 (22%), Gaps = 35/172 (20%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
                   V E D+V L+C     P+ +          I+          +S+       
Sbjct: 11  FLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASSYFIDAAT 62

Query: 355 RINMGAYMCLADN------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRY 402
             + G Y C  +             +   +L   R V         L C         + 
Sbjct: 63  VNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKV 121

Query: 403 WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
               +G                  S       +I    + D  +Y C     
Sbjct: 122 TYLQNGK---------DRKYFHHNS-----DFHIPKATLKDSGSYFCRGLVG 159

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 68.8 bits (167), Expect = 6e-13
 Identities = 32/237 (13%), Positives = 50/237 (21%), Gaps = 70/237 (29%)

Query: 298 SSPIVVREGDNVRLRC---VATGHPKPSIIWK---------------------------- 326
            + + V  G  V L C   +A     P I W                             
Sbjct: 9   HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68

Query: 327 --TSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV---------------- 368
               E+    LG    + +A+ TL  T ++  + G Y C                     
Sbjct: 69  DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128

Query: 369 -------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSIS 421
                      +     V V  G   T+ C       +   W         ++   Y   
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188

Query: 422 D--------------VDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                            + S+     L I    I+D     C               
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 24/114 (21%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSE------ 329
              S +L       S ++  S+   + V EG+++ + C  T     ++ W T        
Sbjct: 121 DAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180

Query: 330 ---------NKPITLGSWKDSAVA-------SSTLNFTRINRINMGAYMCLADN 367
                    NK     +W  S +A       +  L        + G   C    
Sbjct: 181 ETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELAT 234

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 26/171 (15%), Positives = 37/171 (21%), Gaps = 35/171 (20%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
                 I V + D+V L C     P+   I        I           +      + N
Sbjct: 8   KLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPSYRFKAN 59

Query: 355 RINMGAYMCLADN------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRY 402
             + G Y C                    +L          G T  L C        V+ 
Sbjct: 60  NNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSWKDKPLVKV 118

Query: 403 WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
             F +G   +                      +I   N S    Y C    
Sbjct: 119 TFFQNGKSQKFSH---------LDP-----TFSIPQANHSHSGDYHCTGNI 155

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 23/172 (13%), Positives = 36/172 (20%), Gaps = 35/172 (20%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
                   V E D+V L+C     P+            I+          +S+       
Sbjct: 11  FLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS--------SQASSYFIDAAT 62

Query: 355 RINMGAYMCLADN------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRY 402
             + G Y C                +   +L   R V         L C         + 
Sbjct: 63  VDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKV 121

Query: 403 WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
               +G                  S        I    + D  +Y C     
Sbjct: 122 TYLQNGK---------GRKYFHHNS-----DFYIPKATLKDSGSYFCRGLVG 159

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 65.1 bits (158), Expect = 5e-12
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 43/191 (22%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWK-----------------TSENKPITLGSWKD 340
           + P  V E +NV L          +  W                  ++ N      S ++
Sbjct: 6   AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65

Query: 341 SAVASSTLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIG 384
              ++ +L F  I   +MG Y     +                   Q  ++     V   
Sbjct: 66  IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKEL 125

Query: 385 RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF 444
            + TL C       +++ W F   +L   + +  S ++           L I  +   D 
Sbjct: 126 DSVTLTCLSNDIGANIQ-WLFNSQSLQLTERMTLSQNN---------SILRIDPIKREDA 175

Query: 445 DTYRCISKNEV 455
             Y+C   N V
Sbjct: 176 GEYQCEISNPV 186

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 277 NSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG 336
               + +        ++     +   V+E D+V L C++      +I W    ++ + L 
Sbjct: 96  RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLF-NSQSLQLT 153

Query: 337 SWKDSAVASSTLNFTRINRINMGAYMCLADN 367
                +  +S L    I R + G Y C   N
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISN 184

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 65.0 bits (158), Expect = 6e-12
 Identities = 30/206 (14%), Positives = 49/206 (23%), Gaps = 52/206 (25%)

Query: 299 SPIVVREGDNVRL-RCVATGHPKPSIIWKTSENKPITLGS----WKDSAVASSTLNFTRI 353
             + + E   VR             + +     K I  G       D       +   ++
Sbjct: 10  LAVEILEKGQVRFWMQAEKLSGNAKVNY-IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68

Query: 354 NRINMGAYMCLADN---------------------------------VPPQILIRNRRVG 380
              + G Y     +                                   P   +      
Sbjct: 69  QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSWE 127

Query: 381 VPIGRTATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
           V       L+C+V        +  W + D   I  D  K+   D        I  L I+ 
Sbjct: 128 VTGECNVLLKCKVANIKKETHIV-W-YKDEREISVDE-KHDFKD-------GICTLLITE 177

Query: 439 VNISDFDTYRCISKNEVDIAKGSLIL 464
            +  D   Y  I K++    K  L L
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKL 203

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 13/82 (15%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
              I         +   +  G  + L+CVA G P P   W      P+T  +        
Sbjct: 3   KLQIC-----VEPTSQKLMPGSTLVLQCVAVGSPIPHYQW-FKNELPLTHET-------K 49

Query: 346 STLNFTRINRINMGAYMCLADN 367
                  ++  + G Y C   N
Sbjct: 50  KLYMVPYVDLEHQGTYWCHVYN 71

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 18/88 (20%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
             QI +      +  G T  L+C     P    + W F +   + H              
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQ-W-FKNELPLTH-------------- 46

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV 455
            +      +  V++    TY C   N+ 
Sbjct: 47  -ETKKLYMVPYVDLEHQGTYWCHVYNDR 73

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR-YWEFIDGTLIEHDGVKYSISDVDK 425
           N PP I    +      G    ++C + + P   R  W + +  L      +Y++  +  
Sbjct: 12  NGPPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70

Query: 426 GSYQYIMQLNISNVNISDF-DTYRCISKNEVDIAKGSLILFESNAKTPVPT 475
                I  L ISN+  +DF   Y C + N        + L E  ++   P+
Sbjct: 71  EE-GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 288 TIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSW-------- 338
           T+ G   I S+       G+  +++C     P P  I W + +   +  G+         
Sbjct: 10  TVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAW-SWKENVLESGTSGRYTVETI 68

Query: 339 KDSAVASSTLNFTRINRINMGA-YMCLADN 367
                  STL  + I R +    Y C A N
Sbjct: 69  STEEGVISTLTISNIVRADFQTIYNCTAWN 98

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 38/247 (15%), Positives = 79/247 (31%), Gaps = 61/247 (24%)

Query: 297 SSSPIVVREGDNVRLRCV---ATGHPKPSIIWK--------------TSENKPITLGSWK 339
           SS  + V  G++V + CV           + W                  N  +  G ++
Sbjct: 11  SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQ 70

Query: 340 DSAVASS-------TLNFTRINRINMGAYMCLADNVPPQILI-----------RNRRVGV 381
           + +           +L    + + + G Y C        +++             R + V
Sbjct: 71  NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRV 130

Query: 382 PIGRTATLECEVEAFPLSVR---YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ----- 433
            +G T  + C +++          W F  G+  E + V    S++  G +Q + +     
Sbjct: 131 RVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRV 190

Query: 434 ------------LNISNVNISDFDTYRCISKNEVDIAKGSLIL------FESNAKTPVPT 475
                       + +  V  SD   Y C        ++ +++L      F+       PT
Sbjct: 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250

Query: 476 EKEQEEV 482
           +K Q+ +
Sbjct: 251 DKGQQGI 257

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEV---EAFPLSVRYWEFIDGTLIEHDGV--KYSISD 422
             P + + + ++ V +G +  + C V   E   +    W F        + V   YS   
Sbjct: 4   GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 423 VDKGSYQYIMQ-----------LNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           V  G +Q               L + +V  +D   Y C  + + +       +
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 25/114 (21%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--- 342
           PP I     +   S ++V +G+   L C A G P P+I W     + +        +   
Sbjct: 9   PPRI-----VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY-KGGERVETDKDDPRSHRM 62

Query: 343 -VASSTLNFTRI-----NRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLE 390
            + S +L F RI     +R + G Y+C+A N           +G  +   A+LE
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARN----------YLGEAVSHDASLE 106

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 366 DNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYS--ISDV 423
           ++ PP+I+     + V  G  ATL C+ E  P     W +  G  +E D          +
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEW-YKGGERVETDKDDPRSHRMLL 64

Query: 424 DKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
             GS  + +++     +  D   Y C+++N +
Sbjct: 65  PSGS-LFFLRIVHGRKSRPDEGVYVCVARNYL 95

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 32/155 (20%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
               +   V EG  V ++C    HP+  +       +P+            + L      
Sbjct: 287 NVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPL---------GPRAQLLLKATP 335

Query: 355 RINMGAYMCLADN------------------VPPQILIRN--RRVGVPIGRTATLECEVE 394
             N  ++ C A                      P++  R+       P     T  C+  
Sbjct: 336 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW 395

Query: 395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
             PL        DGT     G   +++   +G+Y 
Sbjct: 396 GNPLPELKC-LKDGTFPLPIGESVTVTRDLEGTYL 429

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 60.7 bits (146), Expect = 1e-09
 Identities = 23/217 (10%), Positives = 55/217 (25%), Gaps = 34/217 (15%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
           S S +++  G +V + C  +      +  +T   K   L         ++   +   N  
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLP------GNNRKVYELSNVQ 58

Query: 357 NMGAYMCLADNV---------------PPQILIRNRRVGVPIGRTATLECEVEA---FPL 398
                MC ++                 P ++ +       P+G+  TL C+VE       
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 399 SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458
                       ++ +      ++V            +          + C ++ ++   
Sbjct: 119 LTVVL-LRGEKELKREPAVGEPAEVT---------TTVLVRRDHHGANFSCRTELDLRPQ 168

Query: 459 KGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQD 495
              L    S                + +         
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ 205

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 15/90 (16%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
           +   ++L  P +   +           E       C A G+P P +              
Sbjct: 360 TRELRVLYGPRLDERD---CPGNWTWPENSQQTPMCQAWGNPLPELKC------------ 404

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN 367
            KD            + R   G Y+C A +
Sbjct: 405 LKDGTFPLPIGESVTVTRDLEGTYLCRARS 434

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 18/174 (10%), Positives = 39/174 (22%), Gaps = 36/174 (20%)

Query: 300 PIVVREGDNVRLRCVATG---HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
           P V+       + C   G     +  +     + +     ++ + + ++           
Sbjct: 197 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 256

Query: 357 NMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRY 402
                 C                    P   +   +  V  G   T++CE       V  
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA-KVTL 315

Query: 403 WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456
                  L                      QL +      +  ++ C +  EV 
Sbjct: 316 NGVPAQPLGPR------------------AQLLLKATPEDNGRSFSCSATLEVA 351

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 13/90 (14%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS 337
           S  S  L    +V            V  G  V L C     P P I W   +  P+ L  
Sbjct: 2   SSGSSGLEEVQLV-----VEPEGGAVAPGGTVTLTCEVPAQPSPQIHW-MKDGVPLPLPP 55

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN 367
                  S  L    I   + G Y C+A +
Sbjct: 56  -------SPVLILPEIGPQDQGTYSCVATH 78

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 16/93 (17%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
             Q+++      V  G T TL CEV A P    +W          DGV   +        
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHW--------MKDGVPLPLP--PSPV- 58

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461
                L +  +   D  TY C++ +     + S
Sbjct: 59  -----LILPEIGPQDQGTYSCVATHSSHGPQES 86

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 64.1 bits (155), Expect = 6e-11
 Identities = 39/230 (16%), Positives = 62/230 (26%), Gaps = 47/230 (20%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRC-----VATGHPKPSIIWKTSENKPITLGSWK 339
           +      +  +      +  E    R+ C           KP+I W       I   ++ 
Sbjct: 114 VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY-MGCYKIQ--NFN 170

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADN------------------------VPPQILIR 375
           +       L+F      N G Y C+                           VPP I   
Sbjct: 171 NVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230

Query: 376 NRRV--GVPIGRTATLECEV----EAFPLSVRYWEFIDGTLIE----HDGVKYSISDVDK 425
           N  V      G    + C V         +  +W  IDG   +       +  SIS    
Sbjct: 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW-TIDGKKPDDITIDVTINESISHSRT 289

Query: 426 GSYQYIMQLNISNVNISDFDT-YRCISKNEVDIAKGSLILFESNAKTPVP 474
                   L+I  V   D    Y C +++       +  + +   K P P
Sbjct: 290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ---KVPAP 336

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 51/195 (26%)

Query: 299 SPIVVREGDNVRLRC-----------VATGHPKPSIIW-KTSENKPITLGSWKDSA---- 342
             I V E +  R++C                   ++IW  T +++ +             
Sbjct: 15  RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI 74

Query: 343 -VASSTLNFTRINRINMGAYMCLADN------------VPPQILIRNRRVGVPI------ 383
                 L F      + G Y C+  N            V  +    N  + +P+      
Sbjct: 75  SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIE 134

Query: 384 GRTATLECE-----VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
                + C        +       W ++    I++                    L+   
Sbjct: 135 YGIQRITCPNVDGYFPSSVKPTITW-YMGCYKIQNFNNVIPEGMN----------LSFLI 183

Query: 439 VNISDFDTYRCISKN 453
             IS+   Y C+   
Sbjct: 184 ALISNNGNYTCVVTY 198

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP I+        +   +       L+C ATG P P I W   E         + +    
Sbjct: 8   PPIIL-----QGPANQTLAVDGTALLKCKATGDPLPVISW-LKEGFTFPGRDPRATIQEQ 61

Query: 346 STLNFTRINRINMGAYMCLADN 367
            TL    +   + G Y C+A +
Sbjct: 62  GTLQIKNLRISDTGTYTCVATS 83

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 365 ADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
             + PP IL       + +  TA L+C+    PL V  W   +G        + +I   +
Sbjct: 4   GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQ--E 60

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           +G+      L I N+ ISD  TY C++ +       S +L
Sbjct: 61  QGT------LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
            +  + V     V+L C A G+P   + W+     P      +         +  R+   
Sbjct: 109 DTRILEVPGTGEVQLTCQARGYPLAEVSWQNVS-VPANTSHIRTPEGLYQVTSVLRLKPQ 167

Query: 357 NMGAYMCLADN 367
               + C+  N
Sbjct: 168 PSRNFSCMFWN 178

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 15/135 (11%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYS--ISDVD 424
             P ++        V +G + +LEC+ +    +           +E+D    S   + ++
Sbjct: 6   TAPKEVYT------VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLE 59

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTE----KEQE 480
           +         +I +V + D   YRC+           L +    +   + T         
Sbjct: 60  EQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTG 119

Query: 481 EVTVYNRA---PKPE 492
           EV +  +A   P  E
Sbjct: 120 EVQLTCQARGYPLAE 134

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 64.6 bits (156), Expect = 7e-11
 Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 44/234 (18%)

Query: 295 IFSSSPIVVREGDNVRLRC---VATGHPKPSIIW--KTSENKPITLGSWKDSAVASS--- 346
           IF    +   EG++V + C     + +      W  + +    ITL S +    +     
Sbjct: 4   IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63

Query: 347 ------------TLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVG 380
                        +N  ++++ + G Y C                    P +L   +   
Sbjct: 64  ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123

Query: 381 VPIGRTATLECEVEAFPLSVRYW----------EFIDGTLIEHDGVKYSISDVDKGSYQY 430
           V +GRT T+ C  +      R              ID +   +      I    +G+ Q 
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183

Query: 431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
           +  + I+ + +SD   Y C + ++ +  K +  L     +  +  E  +  VT 
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTF 237

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 64.2 bits (155), Expect = 1e-10
 Identities = 27/219 (12%), Positives = 62/219 (28%), Gaps = 44/219 (20%)

Query: 280 TSQLLIPPTIVGSEHIFSS----SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL 335
             Q+L P   +  E +  S      +     +  +  C  +      ++  T   +    
Sbjct: 216 DLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAF 275

Query: 336 GS----WKDSAVASSTLNFTRINRINMGAYMCLADN------------------VPPQIL 373
                        S ++  T + + + G Y+C A +                      I 
Sbjct: 276 EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIP 335

Query: 374 IRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDG-------TLIEHDGV-------KY 418
                V    G +  + C        S++YW   +G        L++ +G        + 
Sbjct: 336 RSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 395

Query: 419 SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
           S+ +           + ++ +   D   Y C++  +   
Sbjct: 396 SLLEEPG---NGTFTVILNQLTSRDAGFYWCLTNGDTLW 431

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.8 bits (128), Expect = 2e-07
 Identities = 25/229 (10%), Positives = 56/229 (24%), Gaps = 38/229 (16%)

Query: 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS---------------- 337
              S + +    G +V + C        SI +                            
Sbjct: 334 IPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG 393

Query: 338 ----WKDSAVASSTLNFTRINRINMGAYMCLADN-------------VPPQILIRNRRVG 380
                ++    + T+   ++   + G Y CL +                   L     V 
Sbjct: 394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVT 453

Query: 381 VPIGRTATLECEVEA----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI 436
             +G T  + C        +      W       +       S + V+      ++ L +
Sbjct: 454 AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTL 513

Query: 437 SNVNISDFDTYRC-ISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
           + V  +D   Y C + +        ++ +     K     +    +   
Sbjct: 514 NLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADA 562

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 62.8 bits (152), Expect = 7e-11
 Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 32/155 (20%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
               +   V EG  V ++C A  HP+  +            G         + L      
Sbjct: 102 NVILTKPEVSEGTEVTVKCEA--HPRAKVTLN---------GVPAQPLGPRAQLLLKATP 150

Query: 355 RINMGAYMCLADN------------------VPPQILIRN--RRVGVPIGRTATLECEVE 394
             N  ++ C A                      P++  R+       P     T  C+  
Sbjct: 151 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW 210

Query: 395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
             PL        DGT     G   +++   +G+Y 
Sbjct: 211 GNPLPELKC-LKDGTFPLPIGESVTVTRDLEGTYL 244

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 15/84 (17%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV 343
           L  P +   +           E       C A G+P P +               KD   
Sbjct: 181 LYGPRLDERD---CPGNWTWPENSQQTPMCQAWGNPLPELKC------------LKDGTF 225

Query: 344 ASSTLNFTRINRINMGAYMCLADN 367
                    + R   G Y+C A +
Sbjct: 226 PLPIGESVTVTRDLEGTYLCRARS 249

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 44/188 (23%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGH---PKPSIIWKTSENKPITLGSWKDSA 342
           PP +V         P V+       + C   G     +  +     + +     ++ + +
Sbjct: 6   PPQLVS--------PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDS 57

Query: 343 VASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTAT 388
            ++                 C                    P   +   +  V  G   T
Sbjct: 58  FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVT 117

Query: 389 LECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448
           ++CE                              +   +     QL +      +  ++ 
Sbjct: 118 VKCEAHPRAKVTLNGV--------------PAQPLGPRA-----QLLLKATPEDNGRSFS 158

Query: 449 CISKNEVD 456
           C +  EV 
Sbjct: 159 CSATLEVA 166

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 33/235 (14%), Positives = 56/235 (23%), Gaps = 52/235 (22%)

Query: 271 SCSLLPNSETSQLLIPPTIVGSEHIFSSSPI---VVREGDNVRLRCVATGHPKPSIIWKT 327
           S  L+   E  +LL          +   S +   ++ +G                + +  
Sbjct: 85  SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY-I 143

Query: 328 SENKPITLGSW----KDSAVASSTLNFTRINRINMGAYMCLADN---------------- 367
              K I  G       D       +   ++   + G Y     +                
Sbjct: 144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF 203

Query: 368 -----------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR-YWEFIDGT 409
                              P  +       V       L+C+V          W   D  
Sbjct: 204 KKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYK-DER 261

Query: 410 LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
            I  D  K+   D    +      L I+  +  D   Y  I K++    K  L L
Sbjct: 262 EISVDE-KHDFKD-GICT------LLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 23/222 (10%), Positives = 55/222 (24%), Gaps = 36/222 (16%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSAVASSTLNFTRINR 355
              +      ++   C     PK    W   +            +S    + + F  +  
Sbjct: 10  VVNVDDDGVISLNFEC-DKMTPKSEFSWS-KDYVSTEDSPRLEVESKGNKTKMTFKDLGM 67

Query: 356 INMGAYMCLADN--------------------------VPPQILIRNRRVGVPIGRTATL 389
            ++G Y C   +                           P   +     V +        
Sbjct: 68  DDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRF 127

Query: 390 ECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448
             + E     +   +   +   I     KY +          I+++ +  +   D  TY 
Sbjct: 128 WMQAEKLSGNAKVNY-IFNEKEIFEGP-KYKMHIDRNT---GIIEMFMEKLQDEDEGTYT 182

Query: 449 CISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPK 490
              ++       +++L     K      + Q +  +  + P 
Sbjct: 183 FQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 224

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 9/124 (7%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           + P        V      +   EC+    P S   W   D    E    +  +      +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSW-SKDYVSTEDSP-RLEVESKGNKT 58

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNR 487
                ++   ++ + D   Y C   +   IA  S ++ E   K  +    E +  TV  +
Sbjct: 59  -----KMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVK 112

Query: 488 APKP 491
           +   
Sbjct: 113 SELA 116

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           P  +     +       VR G +V   C A +  P  +++W    N  +       +   
Sbjct: 9   PIMVT----VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP----SRAMDF 60

Query: 345 SSTLNFTRINRINMGAYMCLADN 367
           +  L    +   + G Y+C   N
Sbjct: 61  NGILTIRNVQPSDAGTYVCTGSN 83

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 369 PPQILIR-NRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           P  + +   R   V  G   T  C  ++  P     W  +    +    + ++      G
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN------G 62

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                  L I NV  SD  TY C   N   + +G+  L
Sbjct: 63  I------LTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSA 342
           + P I+ +        I ++ G    L     G P P+  W T  +    L      D+ 
Sbjct: 1   LKPKILTASR-----KIKIKAGFTHNLEVDFIGAPDPTATW-TVGDSGAALAPELLVDAK 54

Query: 343 VASSTLNFTRINRINMGAYMCLADN 367
            +++++ F    R + G Y     N
Sbjct: 55  SSTTSIFFPSAKRADSGNYKLKVKN 79

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           + P+IL  +R++ +  G T  LE +    P     W  +  +       +  +      +
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATW-TVGDSGAALAP-ELLVDAKSSTT 58

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                 +   +   +D   Y+   KNE+   +    +
Sbjct: 59  -----SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
             P  + + +   V  G +  LEC++ A P    +W   +  +++ +  + S+   + G 
Sbjct: 14  RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFW-KRNNEMVQFNTDRISLYQDNTGR 72

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461
                 L I +VN  D   Y   + NE  +   +
Sbjct: 73  V----TLLIKDVNKKDAGWYTVSAVNEAGVTTCN 102

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----WKDSAVASSTLNFTRIN 354
               V EGD+V+L C  +  P P + WK   N+ +   +             TL    +N
Sbjct: 23  QSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNTDRISLYQDNTGRVTLLIKDVN 81

Query: 355 RINMGAYMCLADN 367
           + + G Y   A N
Sbjct: 82  KKDAGWYTVSAVN 94

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-A 344
              I   +    +  + V EG  V+  C A G P P+I+W +     ++  S     V  
Sbjct: 384 RARIRDRK----AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP 439

Query: 345 SSTLNFTRINRINMGAYMCLADNV 368
             TL        + G Y+C+A N 
Sbjct: 440 DGTLEVRYAQVQDNGTYLCIAANA 463

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD-GVKYSISDVDKGS 427
                 + ++V V  G T    C  +  P     W      L+      + ++     G+
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF--PDGT 442

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV 455
                 L +    + D  TY CI+ N  
Sbjct: 443 ------LEVRYAQVQDNGTYLCIAANAG 464

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFT-- 351
            I     +V        L C A G+PK  +IW +S+++ ++ G    +        F   
Sbjct: 119 KINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS-GKTTTTNSKREEKLFNVT 177

Query: 352 ---RINRINMGAYMCLADNVPPQI 372
              RIN      + C    + P+ 
Sbjct: 178 STLRINTTTNEIFYCTFRRLDPEE 201

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 44/219 (20%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPS-----IIWKTSENKPITLGSWKDS----------- 341
               VV  G N+ + C      +       + W+  +   I     ++            
Sbjct: 8   KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67

Query: 342 --------AVASSTLNFTRINRINMGAYMCLADN-------------VPPQILIRNRRVG 380
                   ++ ++ L  T +   + G Y C+                 P   + +   V 
Sbjct: 68  ARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVV 127

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
            P+     L C+ E +P +   W   D  ++       + S  ++  +     L I+   
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS-GKTTTTNSKREEKLFNVTSTLRINT-- 184

Query: 441 ISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEK 477
            +  + + C  +     +     L++ E     P P E+
Sbjct: 185 -TTNEIFYCTFRRLDPEENHTAELVIPELPLAHP-PNER 221

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           + PTI G+             G+++ + C A+G+P P I+W   +N+ +   S       
Sbjct: 9   VAPTITGNL-----ENQTTSIGESIEVSCTASGNPPPQIMW-FKDNETLVEDSGIVLKDG 62

Query: 345 SSTLNFTRINRINMGAYMCLADNV 368
           +  L   R+ + + G Y C A +V
Sbjct: 63  NRNLTIRRVRKEDEGLYTCQACSV 86

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 15/117 (12%)

Query: 364 LADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDV 423
           + + V P I          IG +  + C     P     W F D   +  D     + D 
Sbjct: 5   VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMW-FKDNETLVEDS-GIVLKD- 61

Query: 424 DKGSYQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKE 478
              +      L I  V   D   Y C + + +     +   I+  +       T  E
Sbjct: 62  GNRN------LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA----QEKTNLE 108

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP I             V       L CVATG P P+I+W+  +   ++    +   + +
Sbjct: 8   PPVI-----RQGPVNQTVAVDGTFVLSCVATGSPVPTILWR-KDGVLVSTQDSRIKQLEN 61

Query: 346 STLNFTRINRINMGAYMCLADN 367
             L        + G Y C+A  
Sbjct: 62  GVLQIRYAKLGDTGRYTCIAST 83

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 365 ADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
             + PP I        V +  T  L C     P+    W   DG L+     +     ++
Sbjct: 4   GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQ--LE 60

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL----FESNAKTPVPTEKE 478
            G       L I    + D   Y CI+      A  S  +    F    + P PT+  
Sbjct: 61  NGV------LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPN 112

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 278 SETSQLLIPPTIVGSEHIFSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL 335
           S +S + + P+       FSS      V EG +  L+C   G P P I W     +PI  
Sbjct: 3   SGSSGMEVAPS-------FSSVLKDCAVIEGQDFVLQCSVRGTPVPRITW-LLNGQPIQY 54

Query: 336 GSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
                     + L+       + G Y CLA+N
Sbjct: 55  AR-STCEAGVAELHIQDALPEDHGTYTCLAEN 85

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 359 GAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKY 418
           G+       V P      +   V  G+   L+C V   P+    W  ++G  I     +Y
Sbjct: 1   GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITW-LLNGQPI-----QY 54

Query: 419 SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
           + S  + G      +L+I +    D  TY C+++N +
Sbjct: 55  ARSTCEAGVA----ELHIQDALPEDHGTYTCLAENAL 87

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 283 LLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK-DS 341
           +  PP I    H+      + + G+ + L     G P+P ++W T    P+        +
Sbjct: 18  IAEPPKIRLPRHL--RQTYIRKVGEQLNLVVPFQGKPRPQVVW-TKGGAPLDTSRVHVRT 74

Query: 342 AVASSTLNFTRINRINMGAYMCLADN 367
           +   +     +  R + G Y      
Sbjct: 75  SDFDTVFFVRQAARSDSGEYELSVQI 100

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 11/91 (12%)

Query: 368 VPPQILIRN---RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
            PP+I +     +     +G    L    +  P     W    G  ++   V    SD D
Sbjct: 20  EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW-TKGGAPLDTSRVHVRTSDFD 78

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
                      +     SD   Y    + E 
Sbjct: 79  T-------VFFVRQAARSDSGEYELSVQIEN 102

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 365 ADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
               PP   +      V  G+   +   V+  P  V  W   +   +  D  +++    +
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSW-LRNRQPVRPDQRRFAEEA-E 58

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
            G      +L I      D   Y C + NE 
Sbjct: 59  GGLC----RLRILAAERGDAGFYTCKAVNEY 85

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS---STLNFTRINR 355
               VREG +V +     G PKP + W     +P+     + +  A      L      R
Sbjct: 13  MDQSVREGQDVIMSIRVQGEPKPVVSWL-RNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71

Query: 356 INMGAYMCLADN 367
            + G Y C A N
Sbjct: 72  GDAGFYTCKAVN 83

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 21/187 (11%), Positives = 48/187 (25%), Gaps = 41/187 (21%)

Query: 293 EHIFSSSPIVVREGDNVRLRC--VATGHPKPSIIWKTSENKPITLGSWKDSAVASS---- 346
           + I ++       G ++ L             I W+ + +K       K+          
Sbjct: 1   KEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY 60

Query: 347 ------TLNFTRINRINMGAYMCLADNVPPQILIRNR---RVGVPI--------GRTATL 389
                 TL    +   +   Y     +   + ++      ++   +            TL
Sbjct: 61  KLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTL 120

Query: 390 ECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
            CEV           + DG  ++                    ++       S    ++C
Sbjct: 121 TCEVMNGTDPELNL-YQDGKHLKLSQ-----------------RVITHKWTTSLSAKFKC 162

Query: 450 ISKNEVD 456
            + N+V 
Sbjct: 163 TAGNKVS 169

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 279 ETSQLLIPPTIVGSEHIFSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG 336
            +S+  +            + P  + V EG++ R  C   G P P++ W   + + ++  
Sbjct: 7   HSSKTTLAAR-------ILTKPRSMTVYEGESARFSCDTDGEPVPTVTW-LRKGQVLSTS 58

Query: 337 S--WKDSAVASSTLNFTRINRINMGAYMCLADN 367
           +     +    ST   + +   + G Y  + +N
Sbjct: 59  ARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDK 425
            +  +IL + R + V  G +A   C+ +  P+ +V  W    G ++     ++ ++    
Sbjct: 12  TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVT-WLR-KGQVLSTSA-RHQVTTTKY 68

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNEV 455
            S        IS+V  SD   Y  + +N  
Sbjct: 69  KS-----TFEISSVQASDEGNYSVVVENSE 93

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 24/214 (11%), Positives = 54/214 (25%), Gaps = 48/214 (22%)

Query: 291 GSEHIFSSSPIVVR-EGDNVRLRC-VATGHPKPSIIWKTSENKPITLGSWKDSAVASSTL 348
           GS    S++ + ++   + ++L   V        + W +     I     +     +   
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW-SHNGSAIRYSD-RVKTGVTGEQ 58

Query: 349 NFTRINRINM---GAYMCLADN-----------------------------------VPP 370
            + +IN       G Y+    +                                      
Sbjct: 59  IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 118

Query: 371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQY 430
            +      V +  G+   L C V   P     W   +   +       ++      +   
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW-LKNEKALAQTD-HCNLKFEAGRTA-- 174

Query: 431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                I+ V+ +D   Y  + KN+         +
Sbjct: 175 --YFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P   ++ +   +  G   T  C V   P    YW F DG  I      Y+I     G+ 
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYW-FKDGKQISPKSDHYTIQRDLDGTC 66

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEV 455
                L+ +   + D   Y  ++ N  
Sbjct: 67  ----SLHTTASTLDDDGNYTIMAANPQ 89

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----WKDSAVASSTLNFTRIN 354
               + EG  V   C   G+PKP I W   + K I+  S     +     + +L+ T   
Sbjct: 16  KHYKIFEGMPVTFTCRVAGNPKPKIYWF-KDGKQISPKSDHYTIQRDLDGTCSLHTTAST 74

Query: 355 RINMGAYMCLADN 367
             + G Y  +A N
Sbjct: 75  LDDDGNYTIMAAN 87

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P    +E +       V   + V+ RC A G+P P++ W     K              
Sbjct: 4   APYWTNTEKM-EKRLHAVPAANTVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVR 61

Query: 346 ---STLNFTRINRINMGAYMCLADN 367
               +L    +   + G Y C+ +N
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVEN 86

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 366 DNVPPQIL----IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSIS 421
           +   P       +  R   VP   T    C     P+    W   +G   + +       
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW-LKNGKEFKQEHRIGGYK 59

Query: 422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
             ++        L + +V  SD   Y C+ +NE 
Sbjct: 60  VRNQHW-----SLIMESVVPSDKGNYTCVVENEY 88

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKG 185
           GP GP G  G+ G+RG +G  G+PG  G PG  G  GP  
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPGPCC 40

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 116 GPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEG 158
           GPIG  G  G +GE   +G  G  G PG+ GPPGP G PG   
Sbjct: 1   GPIGPPGPRGNRGE---RGSEGSPGHPGMPGPPGPPGAPGPCC 40

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 18/40 (45%), Positives = 19/40 (47%)

Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEG 179
           G  G  GP G +G  G EG  G  G  G PGP G PG   
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPGPCC 40

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKG 164
           G  G  G +G RGE+G+ G  G PG  G PG  G  GP  
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPGPCC 40

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 149 GPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPG 191
           GP G PG      P+G+ G  G +G PG  G  GP G  G PG
Sbjct: 1   GPIGPPG------PRGNRGERGSEGSPGHPGMPGPPGPPGAPG 37

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 17/40 (42%), Positives = 18/40 (45%)

Query: 134 GERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQG 173
           G  G  G  G  G  G +G PG  G  GP G  G PGP  
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPGPCC 40

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 19/37 (51%), Positives = 21/37 (56%)

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPG 206
           GP G PG  G RG +G  G PG  G+ G  G PG PG
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPG 37

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 113 GLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQG 152
           G  GP G +G  G +G  G  G  G  G PG  G PGP  
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPGPCC 40

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 19/39 (48%)

Query: 227 GKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTPAIC 265
           G  G PG  G  GE+G  G  G+ G  G  G PG P  C
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPGPC 39

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 17/37 (45%)

Query: 197 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 233
           G  G PG  G  G  G  G  G PG  G PG  G PG
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPG 37

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 17/37 (45%), Positives = 19/37 (51%)

Query: 185 GDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG 221
           G +G PG  G  G  G  G PG  G+PG  G  G PG
Sbjct: 1   GPIGPPGPRGNRGERGSEGSPGHPGMPGPPGPPGAPG 37

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 54.3 bits (130), Expect = 6e-09
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 16/89 (17%)

Query: 295 IFSSSP--IVVREGDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKDSAV-------- 343
            F  +P       G +V L C A G P P I W    +          D A         
Sbjct: 23  GFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHA 82

Query: 344 -----ASSTLNFTRINRINMGAYMCLADN 367
                A+ST++   +   + G Y C A N
Sbjct: 83  TYHQHAASTISIDTLVEEDTGTYECRASN 111

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 13/122 (10%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
               +         +G +  L CE    P+    W F      +     +  + +D+   
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80

Query: 429 QYIMQ------LNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEV 482
                      ++I  +   D  TY C + N+ D                V   + Q  V
Sbjct: 81  HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN-------HLTRAPRVKWVRAQAVV 133

Query: 483 TV 484
            V
Sbjct: 134 LV 135

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKG 185
           GPPGP G PG +G  G +G +G PG +G  G  G  GP G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 21/40 (52%), Positives = 22/40 (55%)

Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEG 179
           G PG  GPPGPQG+ G  G  G  G  G  GP G PG  G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 131 GVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
           G  G  G  G  G+ G  G  G+PG  G+RGP G  G PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKG 164
           G  G  G  G +G  G  G+VG PG +G  G  G  GP G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 197 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 236
           G  G PG PG  G+ G+ G+ G+PG+ G  G  G PG  G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 113 GLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQG 152
           G  GP G  G  G  G+ G+ G  G++G  G  GPPGP G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 19/40 (47%), Positives = 22/40 (55%)

Query: 173 GIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPG 212
           G PG  G  GP+G  G  G +GL G+ G  G PG  G PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 167 GYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPG 206
           G PGP G PG +G  G +G +G PG+ G  G  G PG PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 119 GQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEG 158
           G  G  G  G  G+ G+RG  G PG  G  GP G PG  G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 19/40 (47%), Positives = 22/40 (55%)

Query: 134 GERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQG 173
           G  G  G PG  G  G +GI G  G+RG +G  G PGP G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 137 GEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPG 176
           G  G PG  GP G  G  G  G  G +G+ G PGP G PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPG 149
           PPG  GP G +G  G +G +G+ G+RGE+G PG  GPPG
Sbjct: 2   PPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 203 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKG 242
           G PG  G PG  G+ G  G  GLPG+ G  G  G  G  G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 188 GYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 227
           G PG  G  G  GL G+ G+ G+PG+ G  G PG  G PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 116 GPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPG 155
           GP G  G  G +G  G +G  G  G  G  GPPGP G PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 194 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 233
           G  G  G PG  GL G  G  G+ G  G+ G PG  G PG
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 224 GLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
           G PG  G PG  G  G++G+ G  G RG+ G  G PG P
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPP 39

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 212 GRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRG 251
           G  G  G PG  GL G+ GI G  G  GE+G  GP G  G
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           +V P        + V  G  A  +C+VE +P     W F D   ++     + I   ++G
Sbjct: 39  HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMW-FKDDNPVKESR-HFQIDYDEEG 96

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTPVPTEKEQEEVT 483
           +      L IS V   D   Y C + N +        L++     +     E E++E  
Sbjct: 97  NC----SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEE 151

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 20/127 (15%)

Query: 251 GKSGINGVPGTPAICAYK---RESCSLLPNSETSQLLIPPTIVGSEHIFSSSP--IVVRE 305
           G SG      +P             + L      +  + P        F+ +   + V E
Sbjct: 3   GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPY-------FTKTILDMEVVE 55

Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLG-----SWKDSAVASSTLNFTRINRINMGA 360
           G   R  C   G+P P ++W   ++ P+         + +      +L  + +   +   
Sbjct: 56  GSAARFDCKVEGYPDPEVMWF-KDDNPVKESRHFQIDYDEEGNC--SLTISEVCGDDDAK 112

Query: 361 YMCLADN 367
           Y C A N
Sbjct: 113 YTCKAVN 119

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKG 426
            PP+ +     + +  GR   ++ +V   P   V  W +++G  ++ D   + +   +KG
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVS-W-YLNGRTVQSDD-LHKMIVSEKG 60

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEV 455
            +     L    V  SD   Y C++KN  
Sbjct: 61  LH----SLIFEVVRASDAGAYACVAKNRA 85

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV 343
           + PP  +  +       + + EG   R+    +G P P + W     + +         V
Sbjct: 3   MGPPRFI--QVP---ENMSIDEGRFCRMDFKVSGLPAPDVSWY-LNGRTVQSDDLHKMIV 56

Query: 344 ASSTLNFTRINRIN---MGAYMCLADN 367
           +   L+      +     GAY C+A N
Sbjct: 57  SEKGLHSLIFEVVRASDAGAYACVAKN 83

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD--SAV 343
            P I     +   + + V EG    L+C A+     S+ W T     +T G++K   + +
Sbjct: 341 APVI-----VEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVL 394

Query: 344 ASSTLNFTRINRINMGAYMCLADN 367
           +  TLNFT +   + G Y C+  N
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSN 418

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P I+     + V  G  A L+C       SV  W   +GT++ H   K  I+ +  G+ 
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSLTSV-SWITPNGTVMTHGAYKVRIAVLSDGT- 398

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                LN +NV + D   Y C+  N V     S  L
Sbjct: 399 -----LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----WKDSAVASSTLNFTRIN 354
               V      +    ATG P+P+ IW T + K IT G      +D       L   + +
Sbjct: 14  QDTTVSSDSVAKFAVKATGEPRPTAIW-TKDGKAITQGGKYKLSEDKGGF--FLEIHKTD 70

Query: 355 RINMGAYMCLADN 367
             + G Y C   N
Sbjct: 71  TSDSGLYTCTVKN 83

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDK 425
           +  P I+   +   V     A    +    P  +   W   DG  I   G KY +S+ DK
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAI-W-TKDGKAITQGG-KYKLSE-DK 59

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNEV 455
           G +     L I   + SD   Y C  KN  
Sbjct: 60  GGF----FLEIHKTDTSDSGLYTCTVKNSA 85

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSAV 343
            P I+            VR G++V L    TG    +  W     K I        +++ 
Sbjct: 7   GPQIIQFP-----EDQKVRAGESVELFGKVTGTQPITCTW-MKFRKQIQESEHMKVENSE 60

Query: 344 ASSTLNFTRINRINMGAYMCLADN 367
             S L      + + G Y  L +N
Sbjct: 61  NGSKLTILAARQEHCGCYTLLVEN 84

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 365 ADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
           + +  PQI+       V  G +  L  +V         W       I+       + + +
Sbjct: 3   SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESE-HMKVENSE 60

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
            GS     +L I          Y  + +N++   +  + L
Sbjct: 61  NGS-----KLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 271 SCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN 330
           + +          +  P + G   +         EG+ V + C    +P  +I W   + 
Sbjct: 4   AAASSALVPRGSHMYAPKLQGPVAV------YTWEGNQVNITCEVFAYPSATISWFR-DG 56

Query: 331 KPITLGSWK----DSAVASSTLNFTRINRINMGAYMCLADN 367
           + +   ++      +  ++S L  T  +  + G Y C A N
Sbjct: 57  QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 359 GAYMCLADNV--------PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGT 409
             Y   +  +         P++      V    G    + CEV A+P  ++  W      
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATIS-WFRDGQL 58

Query: 410 LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           L   +     I +    S      L ++  + +DF  Y C + N +       IL
Sbjct: 59  LPSSNYSNIKIYNTPSAS-----YLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 14/90 (15%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWK------TSENKPITLGS 337
              PTI   E              +  +     G+PKP++ W              T   
Sbjct: 2   HFAPTITFLES--------PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH 53

Query: 338 WKDSAVASSTLNFTRINRINMGAYMCLADN 367
             +       L       +N G Y  +A N
Sbjct: 54  VTNHTEYHGCLQLDNPTHMNNGDYTLIAKN 83

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           +  P I                +   V+  P     W F +G ++               
Sbjct: 2   HFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQW-FYNGAILNESK-YICTKIHVTN 56

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
             +Y   L + N    +   Y  I+KNE    +  +  
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
            P+I  R +   V  G  A     V   P      W + +G  IE    +      +   
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECE-W-YKNGVKIERSD-RIYWYWPEDNV 61

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV 455
                +L I +V   D  +    + N  
Sbjct: 62  C----ELVIRDVTGEDSASIMVKAINIA 85

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 10/75 (13%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIW-KTSENKPITLGS-----WKDSAVASSTLNFTR 352
               V +G +   R    G P P   W K      I         W +  V    L    
Sbjct: 13  QSQTVGQGSDAHFRVRVVGKPDPECEWYK--NGVKIERSDRIYWYWPEDNVC--ELVIRD 68

Query: 353 INRINMGAYMCLADN 367
           +   +  + M  A N
Sbjct: 69  VTGEDSASIMVKAIN 83

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 11/84 (13%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWK-TSENKPITLGSW----------KDSAV 343
           +  S  I +  G+ + L C A       I +     +                   +   
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 344 ASSTLNFTRINRINMGAYMCLADN 367
             STL    + R + G Y C A +
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASS 95

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWE-FIDGTLIEHDGVKYSISDVDKGSYQYIMQ--LN 435
           + + +G    L C           +      +  +H  +         GS        L 
Sbjct: 18  IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 77

Query: 436 ISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           I  V  SD   Y C + + +   K S  +
Sbjct: 78  IDGVTRSDQGLYTCAASSGLMTKKNSTFV 106

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 29/228 (12%), Positives = 50/228 (21%), Gaps = 60/228 (26%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATG-HPKP---SIIWKTSENKPITLGSWKD 340
           +  T+        S+      GD   L     G  P P   +  W    ++P        
Sbjct: 1   MAFTVS-----IQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKD-DQPHE------ 48

Query: 341 SAVASSTLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPI 383
               ++TL        N G+Y     +                      +   +   V  
Sbjct: 49  --NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106

Query: 384 GRTATLECEVE-------AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI 436
                L   V+       A    + Y       +I+                     + I
Sbjct: 107 QTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD-----------------ITI 149

Query: 437 SNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
                     Y      E + +  S    +    T    +   E  TV
Sbjct: 150 QEFTADKNGVYTVKVWGESEDSAASAST-KIMLATMNVDQDVVESKTV 196

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
            P+I +R R   VP G+       V++ P   V+ W + +G  ++    K   ++   G 
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVK-W-YHNGVELQESS-KIHYTN-TSGV 63

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV 455
                 L I + +  D  TYR +  N  
Sbjct: 64  L----TLEILDCHTDDSGTYRAVCTNYK 87

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 9/74 (12%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIW-KTSENKPITLGS----WKDSAVASSTLNFTRI 353
               V  G N R        P   + W        +   S       S V   TL     
Sbjct: 16  RSHRVPCGQNTRFILNVQSKPTAEVKWYH--NGVELQESSKIHYTNTSGV--LTLEILDC 71

Query: 354 NRINMGAYMCLADN 367
           +  + G Y  +  N
Sbjct: 72  HTDDSGTYRAVCTN 85

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 365 ADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR---YWEFIDGTLIEH-DGVKYSI 420
           + +     + + +   V +G   T   +V+A  L  +    W       +    G    +
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 421 SD-VDKGSYQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTP 472
            +  ++ S  Y  ++ I     +    YRC    +   D     L + ES   TP
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 295 IFSSSP--IVVREGDNVRLRCVATGHP---KPSIIWKTSENKPITLGSWK---------- 339
           +F   P    V+ G+++             KP+I W   +   +   + K          
Sbjct: 9   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 68

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADN 367
            S V +  +   +      G Y C    
Sbjct: 69  HSRVYTFEMQIIKAKDNFAGNYRCEVTY 96

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 54.8 bits (131), Expect = 9e-08
 Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 20/173 (11%)

Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLN-------FTRINRIN 357
               + +       P  + IW  S +      +W  + +A ST         F  I   +
Sbjct: 90  PPGLLNVYVKVNNGPLGNPIWNISGDPTR---TWNRAELAISTFWPNFYQVIFEVITSGH 146

Query: 358 MGAYMCLADNV------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLI 411
            G        V           +R + V V  G+ AT +C      ++          + 
Sbjct: 147 QGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR 206

Query: 412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           +    +  ++     S ++I   N+ N    D   YRC+ + E  +   +   
Sbjct: 207 DAPLKEIKVTS----SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 255

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 11/53 (20%), Positives = 13/53 (24%)

Query: 133 KGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKG 185
                    P   G   P    G +G + P    G  G  G P  E       
Sbjct: 3   HHHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAE 55

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 8/58 (13%), Positives = 9/58 (15%)

Query: 133 KGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYP 190
                     G   P    GI G +      G  G  G                    
Sbjct: 6   HAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVPFPPV 63

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 8/52 (15%), Positives = 10/52 (19%)

Query: 119 GQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPG 170
                +      G        G  GV  P    G  G  G    +       
Sbjct: 4   HHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAE 55

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 10/57 (17%), Positives = 13/57 (22%)

Query: 127 KGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGP 183
                V      +G        G  G+       G KG  G P  +          P
Sbjct: 3   HHHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVP 59

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 10/54 (18%), Positives = 13/54 (24%)

Query: 139 KGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGR 192
                V+  P PQG    +   G  G        G  G  G    +        
Sbjct: 3   HHHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAEL 56

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 8/44 (18%), Positives = 12/44 (27%)

Query: 154 PGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDG 197
                   P+G+       GI G +      G  G  G    + 
Sbjct: 6   HAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEM 49

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 13/55 (23%)

Query: 161 GPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNG 215
                M  P PQG    +   G  G        G  G+ G P             
Sbjct: 4   HHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTV 58

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 9/51 (17%), Positives = 14/51 (27%)

Query: 175 PGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 225
                   P+G+      +G+DG        G  G  G    +       L
Sbjct: 6   HAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAEL 56

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 10/53 (18%), Positives = 15/53 (28%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGR 198
                   P  +G+  P   +G  G +      GK+G  G   Y         
Sbjct: 4   HHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAEL 56

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 7/61 (11%), Positives = 12/61 (19%)

Query: 202 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGT 261
                +   P   G        G+ G        G  G+ G          + +      
Sbjct: 3   HHHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVPFPP 62

Query: 262 P 262
            
Sbjct: 63  V 63

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 8/63 (12%), Positives = 13/63 (20%)

Query: 112 PGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGP 171
             +      +GE      +G+ G +      G  G  G                    G 
Sbjct: 6   HAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVPFPPVGA 65

Query: 172 QGI 174
              
Sbjct: 66  PVK 68

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 10/65 (15%), Positives = 11/65 (16%)

Query: 182 GPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEK 241
                M  P   G    D   G  G+       G  G  G                    
Sbjct: 4   HHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVPFPPV 63

Query: 242 GMTGP 246
           G    
Sbjct: 64  GAPVK 68

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 8/47 (17%), Positives = 11/47 (23%)

Query: 148 PGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIG 194
                +      +G        G  G+       G KG  G P    
Sbjct: 3   HHHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEM 49

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 3/68 (4%)

Query: 197 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGIN 256
               +   P   G    +      G DG+       G  G +G      P      +   
Sbjct: 4   HHHAVMPTPSPQGEYLPDMG---LGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVPF 60

Query: 257 GVPGTPAI 264
              G P  
Sbjct: 61  PPVGAPVK 68

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 8/50 (16%), Positives = 13/50 (26%)

Query: 167 GYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGM 216
            +      P  +G+  P   +G  G        G  G+ G          
Sbjct: 4   HHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFT 53

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
           V  G    L  E+      V+ W   +G  I+  G KY               L IS  +
Sbjct: 28  VSKGHKIRLTVELADHDAEVK-W-LKNGQEIQMSGSKYIFES-IGAKR----TLTISQCS 80

Query: 441 ISDFDTYRCISKNE 454
           ++D   Y+C+   E
Sbjct: 81  LADDAAYQCVVGGE 94

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 15/74 (20%), Positives = 27/74 (36%)

Query: 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI 353
             +  S      GD + +RC         +    S  + ++ GS    +V +  L F ++
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 308

Query: 354 NRINMGAYMCLADN 367
              + G Y C A  
Sbjct: 309 QVEDGGVYTCYAMG 322

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 11/114 (9%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
             +G T T+ C+ +   ++  +        +   G   S+S V  G       L    V 
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSP-SNEQVLSQGSNGSVS-VRNGD------LFFKKVQ 309

Query: 441 ISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQ 494
           + D   Y C +  E      S+ L   N       +              P+ +
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADP---WSHPQFE 360

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD--SAV 343
            P I+ +        + + EG    L+C     P  S+ W       ++  S     S +
Sbjct: 352 APFIMDA-----PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVL 404

Query: 344 ASSTLNFTRINRINMGAYMCLADNV 368
              TLNF+ +   + G Y C+  NV
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNV 429

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P I+   R + +  GR A L+C     P+S   W   +GT++ H      IS ++ G+ 
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT- 408

Query: 429 QYIMQLNISNVNISDFDTYRCISKN 453
                LN S+V +SD   Y C+  N
Sbjct: 409 -----LNFSHVLLSDTGVYTCMVTN 428

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRIN- 357
             + V+EG   R+ C  +G P P + W   + KP+   S     V  + ++   I  +  
Sbjct: 17  GDLTVQEGKLCRMDCKVSGLPTPDLSW-QLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75

Query: 358 --MGAYMCLADN 367
              G Y C+A N
Sbjct: 76  RDAGIYTCIATN 87

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
              P  L     + V  G+   ++C+V   P     W  +DG  +  D   + +   + G
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSW-QLDGKPVRPDS-AHKMLVRENG 64

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEV 455
            +     L I  V   D   Y CI+ N  
Sbjct: 65  VH----SLIIEPVTSRDAGIYTCIATNRA 89

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSW 338
             PP +V  E      P +  E     +  V  G+P P++ W        E+K I +  +
Sbjct: 6   YYPPRVVSLE-----EPELRLEH---CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 339 KDSAVASSTLNFTRINRINMGAYMCLADN 367
           ++  ++   L F +    N G Y  +A N
Sbjct: 58  QEGEISEGCLLFNKPTHYNNGNYTLIAKN 86

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
             PP+++         +     +E  V   P    +W   +G  +        +    +G
Sbjct: 6   YYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHW-LHNGQPLRESK-IIHVEYYQEG 60

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEV 455
                  L  +     +   Y  I+KN +
Sbjct: 61  EI-SEGCLLFNKPTHYNNGNYTLIAKNPL 88

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 366 DNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR---YWEFID-GTLIEHDGVKYSIS 421
           D+     ++R +   V +G + T    V    L       W       L    G    + 
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 422 DV-DKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
           D  D+ S  Y+ +L+I++   +   +YRC    +
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTK 94

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 15/88 (17%)

Query: 295 IFSSSP--IVVREGDNVRLRCVATGHP---KPSIIW----------KTSENKPITLGSWK 339
           +F   P    V  G ++       G      P + W          K  ++  +     +
Sbjct: 6   LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDR 65

Query: 340 DSAVASSTLNFTRINRINMGAYMCLADN 367
            S V    L+ T       G+Y C    
Sbjct: 66  ASKVYLFELHITDAQPAFTGSYRCEVST 93

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD------SAVASSTLNF 350
            +  I V EG  + L+CV +     S+ W T     I L  +          +  S    
Sbjct: 7   HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL 66

Query: 351 T-RINRINM---GAYMCLADNVPPQILIRNRRVGVP 382
           +  +  + +   G Y CL  +           V   
Sbjct: 67  SITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLAT 102

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ--LNI 436
           + V  G+T TL+C       S   W    G  I  +      +   +  +    Q  + +
Sbjct: 11  ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70

Query: 437 SNVNISDFDTYRCI 450
            NV + D   Y+C+
Sbjct: 71  PNVTLQDEGVYKCL 84

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 381 VPIGRTATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV 439
              G      C++E +  S +  W +     +E+   KY I+  + G       L + ++
Sbjct: 13  GEEGGHVKYVCKIENYDQSTQVTW-YFGVRQLENSE-KYEIT-YEDGVAI----LYVKDI 65

Query: 440 NISDFDTYRCISKNE 454
              D  TYRC   N+
Sbjct: 66  TKLDDGTYRCKVVND 80

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLG-----SWKDSAVASSTLNFTR 352
              V  EG +V+  C    + + + + W     + +        +++D     + L    
Sbjct: 9   MHAVGEEGGHVKYVCKIENYDQSTQVTW-YFGVRQLENSEKYEITYEDG---VAILYVKD 64

Query: 353 INRINMGAYMCLADN 367
           I +++ G Y C   N
Sbjct: 65  ITKLDDGTYRCKVVN 79

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
           P +     + + V  G  ATL C + +    V+ W +    ++     KYS+   +    
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVK-WCY-GNNVLRPGD-KYSLR-QEGAML 63

Query: 429 QYIMQLNISNVNISDFDTYRCI 450
               +L + N+   D   Y C 
Sbjct: 64  ----ELVVRNLRPQDSGRYSCS 81

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
              I+     V V  G +AT  C +        +W F+D T +  +     I     G +
Sbjct: 13  RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHW-FLDKTPLHANE-LNEIDAQPGGYH 70

Query: 429 QYIMQLNISNVNISDFDTYRCISKNE 454
                L +  + + D  T    + ++
Sbjct: 71  ----VLTLRQLALKDSGTIYFEAGDQ 92

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 8/75 (10%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-----WKDSAVASSTLNFTRI 353
             + V+EG +   RC  +      + W   +  P+          +        L   ++
Sbjct: 21  EDVDVQEGSSATFRCRISPANYEPVHW-FLDKTPLHANELNEIDAQPGGYHV--LTLRQL 77

Query: 354 NRINMGAYMCLADNV 368
              + G     A + 
Sbjct: 78  ALKDSGTIYFEAGDQ 92

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
             ++L     + V     A  +CEV    ++ + W + +G  +     + +IS V +   
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGK-W-YKNGVEVRPSK-RITISHVGRFHK 64

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP 472
                L I +V   D   Y  +           L   E     P
Sbjct: 65  -----LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGP 103

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 8/86 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
           P  I+       V  G    L CE+      V  W   D   I     KY +      + 
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTPVH-W-LKDRKAIRKSQ-KYDVVCEGTMA- 63

Query: 429 QYIMQLNISNVNISDFDTYRCISKNE 454
                L I   ++ D   Y C  +  
Sbjct: 64  ----MLVIRGASLKDAGEYTCEVEAS 85

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
             ++V  GD ++LRC        SI W   +   +   +   + +    +        + 
Sbjct: 17  ESLLVHPGDLLQLRCRLRDDV-QSINW-LRDGVQLVESN--RTRITGEEVEVRDSIPADS 72

Query: 359 GAYMCLADN 367
           G Y C+  +
Sbjct: 73  GLYACVTSS 81

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
           P  + +    + V  G    L C +     S+  W   DG  +     +  I+       
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRDDVQSIN-W-LRDGVQLVESN-RTRITGE----- 60

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEV 455
               ++ + +   +D   Y C++ +  
Sbjct: 61  ----EVEVRDSIPADSGLYACVTSSPS 83

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
           P +     +      G TATL+CE+      V  W       +   G +YS+   D    
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELSKVA-PVE-W-KKGPETLRDGG-RYSLK-QDGTRC 62

Query: 429 QYIMQLNISNVNISDFDTYRCISKNE 454
               +L I +++++D   Y C+   E
Sbjct: 63  ----ELQIHDLSVADAGEYSCMCGQE 84

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
                 + R V V  G  A  E E E   + VR W    G+ I     KY ++       
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETERAGVKVR-W-QRGGSDISASN-KYGLATEGTRH- 63

Query: 429 QYIMQLNISNVNISDFDTYRCI 450
                L +  V  +D  +Y  I
Sbjct: 64  ----TLTVREVGPADQGSYAVI 81

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 366 DNVPPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRY-WEFIDGTLIEHDGVKYSISDV 423
           D   PQI ++        G   +  C   +   S + + W   +  L + +   Y+    
Sbjct: 7   DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66

Query: 424 DKG-SYQYIMQLNISNVNISDFDTYRCISKNEV 455
             G   +Y   L + NV  +    Y+C+  N  
Sbjct: 67  QGGELMEYTTILRLRNVEFTSEGXYQCVISNHF 99

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 11/80 (13%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWK-----------TSENKPITLGSWKDSAVASST 347
                  G +V   C A       + +              EN         +    ++ 
Sbjct: 18  ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77

Query: 348 LNFTRINRINMGAYMCLADN 367
           L    +   + G Y C+  N
Sbjct: 78  LRLRNVEFTSEGXYQCVISN 97

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 24/181 (13%), Positives = 40/181 (22%), Gaps = 39/181 (21%)

Query: 297 SSSPIVVREGDNVRLRC--VATGHPKPSIIWKTSENKPITLGSWKDSAVASS-------- 346
            S  +    G  + L             + W+                + S         
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 347 TLNFTRINRINMGAYMCLADNVPPQ-------ILIRNRRVGVPI----GRTATLECEVEA 395
            L    + R + G Y     +            L     V  P+       ATL CEV  
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLE 121

Query: 396 FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
               V    +     +                     Q  +S    +    ++C + N V
Sbjct: 122 GT-DVELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAVNRV 163

Query: 456 D 456
            
Sbjct: 164 S 164

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 24/126 (19%)

Query: 297 SSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR 355
               + V  G + +L C         S+ W+  +    +LG+   S    S L     + 
Sbjct: 13  PEPVVAVALGASRQLTCRLACADRGASVQWRGLDT---SLGA-VQSDTGRSVLTVRNASL 68

Query: 356 INMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVE-AFPLS 399
              G  +C+                   P Q+ +        +     + C      P+ 
Sbjct: 69  SAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPEVACTAHKVTPVD 125

Query: 400 VRYWEF 405
                F
Sbjct: 126 PNALSF 131

>1nay_A CCP4, collagen-like peptide; collagen assembly, structural protein; 2.60A {Synthetic} SCOP: k.3.1.1 Length = 56

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 128 GEMGVKGERGEKGAPGVVGPPGPQGIPGDEG-KRGPKGDMGYPGPQG 173
           G  G  G  G  G PG  GPPGP G PG       P+    Y    G
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKDG 47

>1nay_A CCP4, collagen-like peptide; collagen assembly, structural protein; 2.60A {Synthetic} SCOP: k.3.1.1 Length = 56

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 18/38 (47%), Positives = 18/38 (47%)

Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGD 177
           G PG  GPPGP G PG  G  GP G  G       P D
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRD 38

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 8/92 (8%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
              I  R + + V  G + + EC +          W  + G  +     ++  +      
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMW-TVGGKTVGSSS-RFQAT-RQGRK 64

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAK 459
           Y     L +     SD        +     A 
Sbjct: 65  Y----ILVVREAAPSDAGEVVFSVRGLTSKAS 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
              +V  GD ++LRC        SI W   +   +   +   + +    +        + 
Sbjct: 11  ESFLVHPGDLLQLRCRLRDDV-QSINW-LRDGVQLAESN--RTRITGEEVEVQDSVPADS 66

Query: 359 GAYMCLADN 367
           G Y C+  +
Sbjct: 67  GLYACVTSS 75

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 12/96 (12%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
                +      V  G    L C +     S+  W   DG  +     +  I+       
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-W-LRDGVQLAESN-RTRITGE----- 54

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
               ++ + +   +D   Y C++ +          +
Sbjct: 55  ----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYS----ISDVDKGSYQYIMQL 434
           V V  G TA L C V+    +   W       +  D  K      I  V    ++    +
Sbjct: 16  VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL--SI 73

Query: 435 NISNVNISDFDTYRC-ISKNEVDIAKGSLI 463
           ++S+V++SD   Y C +    V  +K  L 
Sbjct: 74  SVSDVSLSDEGQYTCSLFTMPVKTSKAYLT 103

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG------SWKDSAVASSTLNFT-RI 353
           + V EG    L C    +   S+ W     + +           +   V +S    +  +
Sbjct: 16  VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISV 75

Query: 354 NRINM---GAYMCLADNVPPQ 371
           + +++   G Y C    +P +
Sbjct: 76  SDVSLSDEGQYTCSLFTMPVK 96

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 27/177 (15%), Positives = 48/177 (27%), Gaps = 37/177 (20%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--------PITLGSWKDSA---VASS 346
           S  I      NV      +  P   ++WK  ++K             S+K+       S 
Sbjct: 2   SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 347 TLNFTRINRINMGAYMCLADNVPPQILIR---NRRVGVPI----GRTATLECEVEAFPLS 399
           +L    +   +   Y   + N+   +         V  P+       ATL CEV      
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDV 120

Query: 400 VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456
                +     +                     Q  +S    +    ++C + N V 
Sbjct: 121 ELKL-YQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAVNRVS 159

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD---GVKYSISDVDK 425
           P  I+       V +G    +  EV      V  W   +G  +  +     +Y     D 
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVM-W-MKNGVELTREDSFKARYRFK-KDG 64

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNE 454
             +     L  S+V   D   Y+ I+   
Sbjct: 65  KRH----ILIFSDVVQEDRGRYQVITNGG 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 5e-06
 Identities = 67/526 (12%), Positives = 154/526 (29%), Gaps = 141/526 (26%)

Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITL----GSWKDSAVASSTLNFTRINR-- 355
           V R    ++LR           + +    K + +    GS K + VA       ++    
Sbjct: 131 VSRLQPYLKLR---------QALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKM 180

Query: 356 ------INMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECE-VEAFPLSVRYWEFIDG 408
                 +N+        N P  +L   +++   I    T   +      L +   +    
Sbjct: 181 DFKIFWLNLKNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDTYRC----ISKNEVDIAKGSLI 463
            L++    +  +  +           N+ N    + F+   C     ++ +       + 
Sbjct: 236 RLLKSKPYENCLLVLL----------NVQNAKAWNAFN-LSCKILLTTRFK------QVT 278

Query: 464 LFESNAKTPVP---------TEKEQEEV--TVYNRAPKPEGQDDLCPPQVL-CPP----- 506
            F S A T            T  E + +     +  P      DL P +VL   P     
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-----QDL-PREVLTTNPRRLSI 332

Query: 507 CSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGLPNRTLDCQVYAVGKPVFHKSTS 566
            ++  ++       +       +  +   L  +        +L+    A  + +F +   
Sbjct: 333 IAESIRDGLATWDNW-------KHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRL-- 378

Query: 567 MKKESSGKPVDVIFGAWMKDPHPTSGNSEKFW--MTTDSDPTHLNEYKDKDMFKSDAKSW 624
                       +F       H  +      W  +        +N+     + +   K  
Sbjct: 379 -----------SVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 625 TYNL---------KEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIIN-IVN----- 669
           T ++         K   +   H    + +   K F +     DL    +     +     
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD----DLIPPYLDQYFYSHIGHH 480

Query: 670 LSTVDP--NIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQY----TW 723
           L  ++    + L++  +  +DF   E  +   +  +  N + + L+T      Y      
Sbjct: 481 LKNIEHPERMTLFRMVF--LDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 724 NITLLHKKVGDM--FVV-CGVLYVVDSVTDRNTNI-RFALDLYKND 765
           N     + V  +  F+         + +  + T++ R AL + +++
Sbjct: 537 NDPKYERLVNAILDFLPKIE----ENLICSKYTDLLRIAL-MAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 74/566 (13%), Positives = 155/566 (27%), Gaps = 190/566 (33%)

Query: 389 LEC-EVEAFPLSVRYWEFIDGTLIEHD------------------GVKYSISDVDKGSYQ 429
            +C +V+  P S+   E ID  ++  D                   V+  + +V + +Y+
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 430 YIM-----QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTV 484
           ++M     +    ++    +   R    N+  +       F   AK  V   +   ++  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-------F---AKYNVSRLQPYLKLR- 141

Query: 485 YNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGNVSSKGL 544
                           Q L                            +++P  NV   G+
Sbjct: 142 ----------------QALL---------------------------ELRPAKNVLIDGV 158

Query: 545 PNRTLDCQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMK-----DPHPTSGNSEKFWM 599
                       GK        +  +   K    IF  W+       P       +K   
Sbjct: 159 L---------GSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLY 207

Query: 600 TTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNS-IVQFD 658
             D + T  +++      +    S    L+   +              K + N  +V  +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLK-------------SKPYENCLLVLLN 252

Query: 659 LGSSKIINIVNLS------TVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKL 712
           + ++K  N  NLS      T    +  + +       SLD            ++  +T  
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-----------HSMTLTPD 301

Query: 713 DTATLQIQYTWNITLLHKKVGDM---------FVVCGVLYVVDSVTDRNTNIRFALDLYK 763
           +  +L ++Y      L  +  D+           +  +   +        N +       
Sbjct: 302 EVKSLLLKY------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 764 NDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHEIDSYNLNKQEKTDA 823
             ++E SLN   P        Y   +  L                 +            A
Sbjct: 356 TTIIESSLNVLEP------AEYRKMFDRL----------------SV----FPP----SA 385

Query: 824 DMTTGV------DITPTQPPLIPDS--TYSFI-------RLTFQDLYTWDRGNSLTYPIR 868
            + T +      D+  +   ++ +    YS +        ++   +Y   +         
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY-A 444

Query: 869 YHE--IDSYNLNKQEKTDADMTTGVD 892
            H   +D YN+ K   +D  +   +D
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 8e-04
 Identities = 66/460 (14%), Positives = 121/460 (26%), Gaps = 165/460 (35%)

Query: 250 RGKSGINGVPGTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNV 309
           R K   + +                L   E   LL+    +         P   RE    
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCR--PQDLP---RE---- 321

Query: 310 RLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368
               V T +P + SII ++  +   T  +WK        +N  ++  I       L + +
Sbjct: 322 ----VLTTNPRRLSIIAESIRDGLATWDNWKH-------VNCDKLTTIIE---SSL-NVL 366

Query: 369 PPQILIRNR-------RVGVPIGRTATLECEVEAFPLSVRYW---EFIDGTLIEHDGVKY 418
            P    R              I  T  L             W      D  ++ +   KY
Sbjct: 367 EPAEY-RKMFDRLSVFPPSAHI-PTILLS----------LIWFDVIKSDVMVVVNKLHKY 414

Query: 419 SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKE 478
           S+  V+K   +  + +                            I  E   K        
Sbjct: 415 SL--VEKQPKESTISIP--------------------------SIYLELKVKLENEYALH 446

Query: 479 QEEVTVYNRAPKPEGQDDLCPPQVLCPPCSDQNKEFNCKEGYFAYDLLGRRDFDVKPLGN 538
           +  V  YN  PK    DDL PP +               + YF Y  +G           
Sbjct: 447 RSIVDHYN-IPKTFDSDDLIPPYL---------------DQYF-YSHIG----------- 478

Query: 539 VSSKGLPNRTLDCQVYAVGKPVFH-KSTSMKKESSGKP---VDVIFGAWMKDPHPTSGNS 594
                                  H K+    +  +      +D  F  +++        +
Sbjct: 479 ----------------------HHLKNIEHPERMTLFRMVFLD--FR-FLEQKIRHDSTA 513

Query: 595 EKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSI 654
                +  +    L  YK             Y            + +N   Y +   N+I
Sbjct: 514 WNASGSILNTLQQLKFYKP------------Y------------ICDNDPKYERLV-NAI 548

Query: 655 VQF------DLGSSKIINIVNLSTVDPNIKLYKTGYNVMD 688
           + F      +L  SK  +++ ++ +  +  +++  +  + 
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           +P +     R      G TA L CE+      V  W +     +     ++S+   D   
Sbjct: 18  LPIKFTEGLRNEEATEGATAVLRCELSKMA-PVE-W-WKGHETLRDGD-RHSLRQ-DGAR 72

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNE 454
                +L I  +   D   Y C+   E
Sbjct: 73  C----ELQIRGLVAEDAGEYLCMCGKE 95

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 17/112 (15%), Positives = 27/112 (24%), Gaps = 21/112 (18%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
                 V  G ++ L C            +TS  +  T        +         I R 
Sbjct: 8   QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGT-----QRGLRWLARQLVDI-RE 61

Query: 357 NMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEV 393
                +C                    P ++ +       P+G   TL C V
Sbjct: 62  PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRV 113

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
             +IL       V +G+   L+CE+       + W   +G  ++    +  +    +   
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENI-PGK-W-TKNGLPVQESD-RLKVVQKGRIH- 61

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466
               +L I+N    D   Y              + +  
Sbjct: 62  ----KLVIANALTEDEGDYVFAPDAYNVTLPAKVHVIS 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
                     + V    TA   C+ E    +V  W       +   G K+  S  +  + 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVT-WRK-GLLELRASG-KHQPSQ-EGLTL 63

Query: 429 QYIMQLNISNVNISDFDTYRCI 450
               +L IS +  +D DTY C 
Sbjct: 64  ----RLTISALEKADSDTYTCD 81

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 8/86 (9%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
             ++      V V +G TA  E E+    +  + W  + G  +        I   D   +
Sbjct: 5   LIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQ-W-KLKGQPLAASP-DCEII-EDGKKH 60

Query: 429 QYIMQLNISNVNISDFDTYRCISKNE 454
                L + N  +         + N 
Sbjct: 61  ----ILILHNCQLGMTGEVSFQAANT 82

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           V  +    +R V    G +ATL CEV      V  W + DG  +     K  +  V    
Sbjct: 10  VFAKEQPAHREVQAEAGASATLSCEVAQAQTEVT-W-YKDGKKLSSSS-KVRVEAVGCTR 66

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNE 454
                +L +     ++   Y C +  +
Sbjct: 67  -----RLVVQQAGQAEAGEYSCEAGGQ 88

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 21/114 (18%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
           S S +++  G +V + C  +      +  +T   K   L         ++   +   N  
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLP------GNNRKVYELSNVQ 58

Query: 357 NMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEA 395
                MC ++                 P ++ +       P+G+  TL C+VE 
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 25/182 (13%), Positives = 44/182 (24%), Gaps = 41/182 (22%)

Query: 297 SSSPIVVREGDNVRLRC-VATGHPKPSIIWKTSENKPITLGSWKDSAV------------ 343
           S   +    G NV L            + W  + N+ I                      
Sbjct: 5   SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64

Query: 344 --ASSTLNFTRINRINMGAYMCLADNVPPQ----ILIRNRRVGVPI----GRTATLECEV 393
              +  L    +++ + G Y     +         +     V  P+       ATL CEV
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEV 124

Query: 394 EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
                 V    +     +                     Q  +S    +    ++C + N
Sbjct: 125 LEGT-DVELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAVN 166

Query: 454 EV 455
            V
Sbjct: 167 RV 168

>2v53_B Collagen alpha-1(III) chain; glycosylated protein, cell adhesion, glycoprotein, ionic channel, ION transport, copper, calcium, secreted, transport; HET: NAG; 3.20A {Homo sapiens} Length = 33

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 18/33 (54%), Positives = 19/33 (57%)

Query: 137 GEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
           G  G PG  GP GP+G PG  G  GPKG  G P
Sbjct: 1   GPPGPPGPPGPSGPRGQPGVMGFPGPKGPPGAP 33

>2v53_B Collagen alpha-1(III) chain; glycosylated protein, cell adhesion, glycoprotein, ionic channel, ION transport, copper, calcium, secreted, transport; HET: NAG; 3.20A {Homo sapiens} Length = 33

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQGIPG 176
           GPPGP G PG  G RG  G MG+PGP+G PG
Sbjct: 1   GPPGPPGPPGPSGPRGQPGVMGFPGPKGPPG 31

>2v53_B Collagen alpha-1(III) chain; glycosylated protein, cell adhesion, glycoprotein, ionic channel, ION transport, copper, calcium, secreted, transport; HET: NAG; 3.20A {Homo sapiens} Length = 33

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEP 205
           GP G PG  G  GP+G    PG +G  G  G PG P
Sbjct: 1   GPPGPPGPPGPSGPRGQ---PGVMGFPGPKGPPGAP 33

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
              +  +        G    LECEV     +V+ W      +I     +Y I   +   +
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSEDDANVK-WFKNGEEIIPGPKSRYRIRV-EGKKH 64

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAK 459
                L I     +D   Y  ++      AK
Sbjct: 65  ----ILIIEGATKADAAEYSVMTTGGQSSAK 91

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 24/168 (14%), Positives = 45/168 (26%), Gaps = 30/168 (17%)

Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW-KDSAVASSTLNFTRINRINMGA 360
           V+  G++V + C   G  +        E  P              +  +   +     G 
Sbjct: 15  VISWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72

Query: 361 YMCLADN-------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR 401
           Y C   +                     P +      + V  G++ TL C+  +      
Sbjct: 73  YRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSRSPM--DT 129

Query: 402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
           +    +        +    S+     +Q      +S V      TYRC
Sbjct: 130 FLLCKER---AAHPLLCLRSEHGAQQHQAE--FPMSPVTSVHGGTYRC 172

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 28/196 (14%), Positives = 43/196 (21%), Gaps = 61/196 (31%)

Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAY 361
             +E  +V L C        +I W   + K I   +           N     +   G Y
Sbjct: 14  DYQEDGSVLLTC---DAEAKNITW-FKDGKMIGFLT-----EDKKKWNLGSNAKDPRGMY 64

Query: 362 MCLADN----------------------------------------VPPQILIRNRRVGV 381
            C                                                  I      V
Sbjct: 65  QCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKV 124

Query: 382 PI-GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
            I G T  L C     P S   W+  +   I  D    +I   +         L++   +
Sbjct: 125 SISGTTVILTCPQY--PGSEILWQH-NDKNIGGDEDDKNIGSDED-------HLSLKEFS 174

Query: 441 -ISDFDTYRCISKNEV 455
            +     Y C  +   
Sbjct: 175 ELEQSGYYVCYPRGSK 190

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
             V  G       E+    L V+ W + +G  I     KY               L I+N
Sbjct: 18  YQVDKGGRVRFVVELADPKLEVK-W-YKNGQEIRPST-KYIFEHKGCQR-----ILFINN 69

Query: 439 VNISDFDTYRCISKNE 454
             ++D   Y   + +E
Sbjct: 70  CQMTDDSEYYVTAGDE 85

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 57/197 (28%)

Query: 297 SSSPIVV--REGDNVRLRC-VATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI 353
           S +P++V    G++V L      G     I W  +E     +   +  +      N  + 
Sbjct: 2   SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQG 61

Query: 354 NRINM----------------GAYMCLADNVP-----------------PQILIRNRRVG 380
            R+N                 G+Y                          Q+   ++   
Sbjct: 62  KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLF- 120

Query: 381 VPIGRTATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV 439
             +     L C VE    +V + WE +  TL                       L +S  
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP------------------NLTVSWD 162

Query: 440 N-ISDFDTYRCISKNEV 455
             IS    Y CI++N V
Sbjct: 163 PRISSEQDYTCIAENAV 179

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 33/171 (19%)

Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPI-TLGSWKDSAVASSTLNFTRINRINMGA 360
           +V+  + V L+C +    +  ++ +  + K    L       V+ +  +   + +   G 
Sbjct: 17  LVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGT 76

Query: 361 YMCLADN----------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL 398
           Y C                            P +  +     V  G + TL C   +   
Sbjct: 77  YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPT-VLAGESVTLSCSSRSSY- 134

Query: 399 SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
              Y    +G   E    ++S      G++    Q +      +   TYRC
Sbjct: 135 -DMYHLSREG---EAHERRFSAGPKVNGTF----QADFPLGPATHGGTYRC 177

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 369 PPQILIRN--RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           P  IL       +         L CE+         W + DG  +E       +    + 
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCELSRVDFPAT-W-YKDGQKVEESE-LLVVKMDGRK 64

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNE 454
                 +L +    + D   + C ++  
Sbjct: 65  H-----RLILPEAKVQDSGEFECRTEGV 87

>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ... Length = 177

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQGI 174
           G PG +G  G  G +G KG+ G P    +
Sbjct: 1   GSPGLKGDKGIPGDKGAKGESGLPDVASL 29

>2klw_A (PKG)10; collagen, synthetic peptide, heterotrimer, de novo protein; HET: HYP; NMR {Synthetic} Length = 32

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 146 GPPGPQGIPGDEGKRGPKGDMGYPGPQG 173
           GP GP+G  G +G +GPKG  G  GP+G
Sbjct: 4   GPKGPKGPKGPKGPKGPKGPKGPKGPKG 31

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 366 DNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK 425
               P+ +++     V  G++A   C V A    V  W   D  L +   VKY     + 
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ--SVKYMK-RYNG 535

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNE 454
             Y     L I+ V   D   Y   +KN 
Sbjct: 536 NDY----GLTINRVKGDDKGEYTVRAKNS 560

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 21/168 (12%), Positives = 44/168 (26%), Gaps = 32/168 (19%)

Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD-SAVASSTLNFTRINRINMGA 360
           V+    +V+++C A      + +     +    +G                 ++    G 
Sbjct: 19  VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78

Query: 361 YMCLADN-------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR 401
           Y C                         P +      V +  G   +L C     P    
Sbjct: 79  YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIP---- 133

Query: 402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
           +  F     +  +G          G +      ++  V+++    YRC
Sbjct: 134 FDRFS----LAKEGELSLPQHQS-GEHPAN--FSLGPVDLNVSGIYRC 174

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 6/108 (5%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
           +   +    GD+V L C        + +              + + +    L    +   
Sbjct: 12  ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-GRRLLLRSVQLH 70

Query: 357 NMGAYMCLADNVPP-QILIRNRRVGVPIGRTATLECEVEAFPLSVRYW 403
           + G Y C     P   + +    V VP      L C  ++   +V   
Sbjct: 71  DSGNYSCYRAGRPAGTVHL---LVDVP-PEEPQLSCFRKSPLSNVVCE 114

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 11/123 (8%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLI-EHDGVKYSISDVDKGS 427
            P  +       V +     +   V+  P     W   +G+++ E   +     +     
Sbjct: 3   MPASV--QLHTAVEMHHW-CIPFSVDGQPAPSLRW-LFNGSVLNETSFIFTEFLEPAANE 58

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL------FESNAKTPVPTEKEQEE 481
                 L ++     +   Y  ++ N    A  S++       FE N + P+P       
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSG 118

Query: 482 VTV 484
             V
Sbjct: 119 DPV 121

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 22/114 (19%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
               + V    ++ + C  T +       +TS NK +           +   ++   N  
Sbjct: 8   RPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQ-------AQWKHYLVSNIS 60

Query: 357 NMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEA 395
           +     C                    P Q+++  +   V +G++ T+EC V  
Sbjct: 61  HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	902
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.85
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.85
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.85
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.85
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.84
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.84
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.84
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.84
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.84
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.84
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.84
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.84
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.84
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.84
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.83
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.83
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.83
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.83
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.83
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.83
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.82
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.82
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.82
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.82
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.82
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.81
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.81
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.81
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.81
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.81
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.8
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.8
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.8
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.8
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.8
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.8
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.8
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.8
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.8
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.79
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.79
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.79
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.79
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.79
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.79
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.79
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.79
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.79
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.78
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.78
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.78
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.78
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.78
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.78
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.77
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.77
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.77
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.77
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.77
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.77
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.77
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.76
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.76
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.76
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.76
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.76
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.76
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.76
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.76
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.76
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.75
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.75
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.75
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.75
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.75
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.75
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.75
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.75
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.75
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.74
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.74
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.74
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.74
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.74
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.74
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.73
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.73
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.73
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.73
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.73
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.73
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.72
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.72
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.72
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.72
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.72
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.72
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.72
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.72
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.72
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.72
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.72
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.71
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.71
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.71
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.71
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.7
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.7
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.7
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.7
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.7
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.7
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.7
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.7
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.7
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.7
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.7
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.7
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.69
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.69
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.69
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.69
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.69
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.69
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.69
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.69
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.69
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.69
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.68
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.68
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.67
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.67
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.67
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.67
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.67
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.67
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.67
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.67
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.67
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.67
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.67
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.67
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.67
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.66
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.66
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.66
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.66
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.66
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.66
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.66
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.65
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.65
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.65
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.65
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.65
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.64
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.64
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.64
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.64
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.63
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.63
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.63
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.63
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.62
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.62
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.62
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.62
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.62
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.62
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.62
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.61
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.61
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.61
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.61
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.61
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.61
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.6
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.6
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.6
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.6
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.6
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.6
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.59
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.58
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.58
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.57
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.57
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.57
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.57
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.57
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.56
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.56
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.56
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.56
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.55
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.55
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.55
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.55
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.54
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.54
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.53
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.53
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.53
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.53
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.52
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.52
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.51
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.51
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.51
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.51
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	99.51
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.5
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.5
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.5
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.5
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.5
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.49
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.49
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.49
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.48
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.47
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.47
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.47
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.46
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.45
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.45
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.44
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.44
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.43
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.43
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.43
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.41
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.4
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.4
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.39
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.38
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.37
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.37
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.36
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.36
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.35
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.34
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.33
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.32
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.32
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.32
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.31
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.31
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.31
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.3
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.29
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.27
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.26
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.26
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.26
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.26
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.26
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.25
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.24
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.22
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.22
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.21
1he7_A	126	High affinity nerve growth factor receptor; transf	99.21
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.2
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.2
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.2
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.19
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.19
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.18
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.16
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.15
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.11
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.1
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.1
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.08
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.06
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.06
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.04
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.03
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.03
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.02
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.02
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.01
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.01
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.99
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.99
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.99
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.98
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.98
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.98
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.97
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.96
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.96
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.96
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.96
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.96
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.95
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.95
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.94
2ens_A	96	Advanced glycosylation END product-specific recept	98.94
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.94
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.92
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.92
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.92
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.92
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.91
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.91
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.91
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.91
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.9
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.9
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.89
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.89
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.89
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.88
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.88
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.87
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.87
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.86
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.86
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.86
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.86
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.86
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.86
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.85
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.85
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.85
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.84
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.84
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.84
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.84
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.84
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.84
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.83
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.83
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.82
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.82
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.82
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.81
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.81
2ens_A	96	Advanced glycosylation END product-specific recept	98.79
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.79
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.79
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.79
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.79
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.78
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.78
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.78
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.77
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.77
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.77
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.76
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.76
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.75
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.75
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	98.75
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.74
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.74
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.73
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.73
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.72
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.72
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.71
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.71
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.71
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.7
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.69
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.69
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.69
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.68
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.67
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.67
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.66
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.65
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.65
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.65
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.64
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.64
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.64
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.64
1he7_A	126	High affinity nerve growth factor receptor; transf	98.63
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.63
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.63
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.62
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.62
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.61
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.61
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.61
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.6
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.6
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.58
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.58
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.57
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.56
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.56
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.56
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	97.97
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.55
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.55
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.53
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.52
3khq_A	133	B-cell antigen receptor complex-associated protei	98.52
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.5
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.5
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.5
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.5
1xt5_A	135	Variable region-containing chitin-binding protein	98.49
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.49
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	98.48
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.48
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.48
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.48
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.48
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.47
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.47
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.47
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.46
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.46
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.46
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.45
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.45
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.45
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.45
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.44
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.44
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.43
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.43
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.42
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	98.42
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.41
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.41
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.41
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.4
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.4
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.39
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.39
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.39
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.39
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.39
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.38
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.38
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.38
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.38
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.37
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.37
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.37
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.37
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.37
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.36
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.36
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.35
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.35
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.35
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.34
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.34
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.34
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.34
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.33
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.33
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.33
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.33
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.33
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.32
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.32
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.32
3khq_A	133	B-cell antigen receptor complex-associated protei	98.31
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.31

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.85  E-value=5.6e-21  Score=192.97  Aligned_cols=167  Identities=22%  Similarity=0.268  Sum_probs=127.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCC--cEEEEeeeeecCceeEEeecC----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASS--TLNFTRINRINMGAYMCLADN----  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~--sL~I~~Vt~~DsG~YtC~A~N----  367 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+.......... ..++  +|.|.+++.+|+|.|+|.|.|    
T Consensus         8 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~   87 (197)
T 2j8h_A            8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS   87 (197)
T ss_dssp             EECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEE
T ss_pred             EEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCc
Confidence            345567889999999999999999999999999876654332211111 2233  899999999999999999988    


Q ss_pred             ----------CCCEEEE-----cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 ----------VPPQILI-----RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 ----------~~P~i~~-----~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                .+|.+..     .+....+.+|+.+.|.|.+.+.|.|.+.|++++..+....  ++.+.....     ..
T Consensus        88 ~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~-----~~  160 (197)
T 2j8h_A           88 VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG--HYQVIVTRS-----FT  160 (197)
T ss_dssp             EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSS--SCEEEECSS-----EE
T ss_pred             eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCC--CEEEEEcCC-----ce
Confidence                      1222211     1234567889999999999999999999999887765332  233222211     34


Q ss_pred             EEEEec-cCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        433 QLNISN-VNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       433 tL~I~~-V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|.|.+ ++.+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       161 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            699999 999999999999999999999999998863

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.85  E-value=5.4e-21  Score=191.25  Aligned_cols=164  Identities=21%  Similarity=0.380  Sum_probs=125.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------  367 (902)
                      +..+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+......+.....+++|.|.+++.+|+|.|+|.+.|       
T Consensus         6 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   85 (189)
T 2v5t_A            6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID   85 (189)
T ss_dssp             EECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEE
T ss_pred             eccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceE
Confidence            3456678899999999999999999999999998877655444555556678999999999999999999987       


Q ss_pred             ---------CCCEEEEcCc--eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEE
Q psy12803        368 ---------VPPQILIRNR--RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       368 ---------~~P~i~~~p~--~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                               .+|.+.....  ...+.+|+.+.|.|.+.+.|.|.+.|++++..+....  ++.+.. ..      ++|.|
T Consensus        86 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~-~~------~~L~i  156 (189)
T 2v5t_A           86 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKG-SN------TELTV  156 (189)
T ss_dssp             EEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSS--SEEEET-TT------TEEEE
T ss_pred             EEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCC--cEEEec-CC------CEEEE
Confidence                     2333333222  3456789999999999999999999999876654322  232221 12      24999


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      .+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       157 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          157 RNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            9999999999999999999999999988875

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.85  E-value=5.1e-21  Score=192.50  Aligned_cols=166  Identities=21%  Similarity=0.271  Sum_probs=130.1

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc-cee--ccCCcEEEEeeeeecCceeEEeecC----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK-DSA--VASSTLNFTRINRINMGAYMCLADN----  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~-~~~--~~~~sL~I~~Vt~~DsG~YtC~A~N----  367 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+......+ ...  ....+|.|.+++.+|+|.|+|.|.|    
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   88 (194)
T 2a38_A            9 TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ   88 (194)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCce
Confidence            335567889999999999999999999999999877654332111 111  1234899999999999999999987    


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                                   .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+....  ++.+.....     .++|
T Consensus        89 ~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~~~~-----~~~L  161 (194)
T 2a38_A           89 ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL--DFQISQEGD-----LYSL  161 (194)
T ss_dssp             EEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSS--SEEEEEETT-----EEEE
T ss_pred             EeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCC--cEEEEEcCC-----EEEE
Confidence                         24555666667788999999999999999999999999887664332  333322221     2359


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      .|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       162 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          162 LIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            999999999999999999999999999999874

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.85  E-value=1.6e-21  Score=201.37  Aligned_cols=157  Identities=18%  Similarity=0.196  Sum_probs=114.0

Q ss_pred             cEEEEcCCeEEEEE---ecCCCCCCceEEecCCCccccc-----C----------Cccc---eeccCCcEEEEeeeeecC
Q psy12803        300 PIVVREGDNVRLRC---VATGHPKPSIIWKTSENKPITL-----G----------SWKD---SAVASSTLNFTRINRINM  358 (902)
Q Consensus       300 ~v~v~eGe~v~L~C---~a~G~P~p~v~W~k~~~~~~~~-----~----------~~~~---~~~~~~sL~I~~Vt~~Ds  358 (902)
                      ++++.+|++|+|.|   .+.+.|.+.|+|+|++......     .          ..+.   ......+|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            47899999999999   4678899999999976532110     0          0000   111234799999999999


Q ss_pred             ceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--CceEEEee
Q psy12803        359 GAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--GVKYSISD  422 (902)
Q Consensus       359 G~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--~~~~~~~~  422 (902)
                      |.|+|.|.|              .+|.+...+..+.+.+|++++|.|.+.|.|.|.|+|+++++.+....  ..++.+  
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~--  159 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK--  159 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE--
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE--
Confidence            999999998              46666667777888999999999999999999999998877654322  222332  


Q ss_pred             cCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        423 VDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       423 ~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ..++.   ...|.|.+++.+|+|.|+|+|+|.+|+++..
T Consensus       160 ~~~g~---l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          160 EKDGS---LSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             CTTSC---EEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             eCCCC---EEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            23333   2347778999999999999999999998753

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.85  E-value=4.2e-21  Score=198.57  Aligned_cols=158  Identities=16%  Similarity=0.188  Sum_probs=123.7

Q ss_pred             cEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceecc-CC--cEEEEeeeeecCceeEEeecC--------
Q psy12803        300 PIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA-SS--TLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~--sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      ++.+.+|+.+.|.|.+.+ .|.|.|+|+|++..+......+..... ++  +|.|.+++.+|+|.|+|.|.|        
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~   90 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST   90 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEE
Confidence            578999999999999975 799999999988766543333222222 12  699999999999999997766        


Q ss_pred             C-------------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEe
Q psy12803        368 V-------------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       368 ~-------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      .                         +|.|...+ ...+.+|+++.|.|.+.+. |.|.|.|++++..+....  ++.  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~--~~~--  165 (207)
T 3rbs_A           91 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHD--  165 (207)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC--CCC--
T ss_pred             EEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC--ceE--
Confidence            0                         46666554 4678999999999999999 999999999887775422  111  


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                       ...    ...+|.|.+++.+|+|.|+|+|.|.+|.+++++.|.+.
T Consensus       166 -~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          166 -FKD----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             -CSS----EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             -cCC----CEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence             111    13459999999999999999999999999999998754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.84  E-value=2.2e-21  Score=230.42  Aligned_cols=196  Identities=21%  Similarity=0.350  Sum_probs=145.7

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV  343 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~  343 (902)
                      .|.+.|..+.... ...+.+..+|.+...    ......+.+|+.+.|.|.+.|.|.+.++|+|++..+......+....
T Consensus       269 ~C~a~N~~g~~~~-~~~l~V~~~p~~~~~----~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~  343 (570)
T 3b43_A          269 TCYASNVAGKDSC-SAQLGVQEPPRFIKK----LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV  343 (570)
T ss_dssp             EEEEEETTEEEEE-EEEECCBCCCEEEEC----CCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEE
T ss_pred             EEEEECCCCcEEE-EEEEEeecCCccccc----CCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEE
Confidence            4555555544322 223444455544221    12234578999999999999999999999998776544333222222


Q ss_pred             -cCCcEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC
Q psy12803        344 -ASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG  408 (902)
Q Consensus       344 -~~~sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~  408 (902)
                       ....|.|.+++.+|+|.|+|.|.|              .+|.|...+..+.+.+|+++.|.|.+.|.|.|.|.|++++.
T Consensus       344 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~  423 (570)
T 3b43_A          344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR  423 (570)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCE
Confidence             235799999999999999999998              67888777888888999999999999999999999999887


Q ss_pred             eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .+..  +.++.+.....     ..+|.|.+++.+|+|.|+|.|.|.+|.....+.|.|..+|.
T Consensus       424 ~l~~--~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~  479 (570)
T 3b43_A          424 ELRS--GKKYKIMSENF-----LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR  479 (570)
T ss_dssp             ECCS--SSSEEEEEETT-----EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCE
T ss_pred             ECcC--CCCEEEEEcCC-----EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCc
Confidence            6643  23333322211     24599999999999999999999999999999999887654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.84  E-value=2.3e-20  Score=188.09  Aligned_cols=164  Identities=20%  Similarity=0.342  Sum_probs=128.8

Q ss_pred             eecCCcEEEEc-CCeEEEEEecCCCCC--CceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----
Q psy12803        295 IFSSSPIVVRE-GDNVRLRCVATGHPK--PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----  367 (902)
Q Consensus       295 i~~~~~v~v~e-Ge~v~L~C~a~G~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----  367 (902)
                      +..+..+.+.+ |++++|.|.+.+.|.  +.+.|+|++..+....    ....+..|.|.+++.+|+|.|+|.|.|    
T Consensus         6 i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   81 (190)
T 2wv3_A            6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR----KNASNMEYRINKPRAEDSGEYHCVYHFVSAP   81 (190)
T ss_dssp             EEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCC----BCCSEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccc----eEeccEEEEEecCCcccCEEEEEEEEeCCcc
Confidence            33455567777 999999999998887  8999999776543221    112457899999999999999999976    


Q ss_pred             ---------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEec-CCeeee--cCCceEEEeecCCCceeeEeEEE
Q psy12803        368 ---------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI-DGTLIE--HDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 ---------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~-~~~l~~--~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                               .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|+++ ++....  ....++.+.....     .++|.
T Consensus        82 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~L~  156 (190)
T 2wv3_A           82 KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN-----YTELN  156 (190)
T ss_dssp             EEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSS-----EEEEE
T ss_pred             cccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCC-----eeEEE
Confidence                     678888777788899999999999999999999999984 333322  1233444333221     24699


Q ss_pred             EeccC-CCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        436 ISNVN-ISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       436 I~~V~-~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |.+++ .+|+|.|+|.|.|..|....++.|.|.
T Consensus       157 i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          157 IVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            99999 799999999999999999999999885

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.84  E-value=5.2e-21  Score=192.16  Aligned_cols=163  Identities=22%  Similarity=0.328  Sum_probs=127.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+..............+|.|.+++.+|+|.|+|.+.|         
T Consensus        13 ~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   92 (192)
T 2iep_A           13 PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC   92 (192)
T ss_dssp             CCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEE
T ss_pred             CccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeE
Confidence            34567899999999999999999999999997765433222222223345799999999999999999988         


Q ss_pred             ------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 ------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                            .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  .++...  ..+      +|.|.+++.
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~--~~~~~~--~~~------~L~i~~~~~  162 (192)
T 2iep_A           93 GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN--SRIAVL--ESG------SLRIHNVQK  162 (192)
T ss_dssp             EEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC--SSEEEC--TTS------CEEESSCCG
T ss_pred             EEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC--CcEEEe--cCC------cEEEecCCh
Confidence                  3555666666778899999999999999999999999987665432  233322  222      399999999


Q ss_pred             CCCeEEEEEEEeCCcee-EEEEEEEeecC
Q psy12803        442 SDFDTYRCISKNEVDIA-KGSLILFESNA  469 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~-~~s~~L~V~~~  469 (902)
                      +|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus       163 ~d~G~Y~C~a~n~~g~~~s~~~~l~V~~p  191 (192)
T 2iep_A          163 EDAGQYRCVAKNSLGTAYSKLVKLEVEVF  191 (192)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             hhCEEEEEEEEcCCCcEEEEEEEEEEEeC
Confidence            99999999999999988 45688888754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.84  E-value=1.9e-20  Score=200.19  Aligned_cols=169  Identities=21%  Similarity=0.359  Sum_probs=133.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.++|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|        
T Consensus        11 ~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~   90 (284)
T 2rik_A           11 KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS   90 (284)
T ss_dssp             CCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEE
Confidence            45678899999999999999999999999998766543332222222 346899999999999999999988        


Q ss_pred             ------CCCEEEEcC-ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC
Q psy12803        368 ------VPPQILIRN-RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       368 ------~~P~i~~~p-~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                            .+|.+.... ....+.+|+.+.|.|.+.+.|.+.+.|++++..+......+...  ...     ...|.|.+++
T Consensus        91 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~--~~~-----~~~L~i~~~~  163 (284)
T 2rik_A           91 AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF--VES-----VAVLEMYNLS  163 (284)
T ss_dssp             EEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEE--ETT-----EEEEEECSCC
T ss_pred             EEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEE--cCC-----EEEEEECCCC
Confidence                  566665543 34568899999999999999999999999887665433322221  111     3469999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        441 ISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .+|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       164 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  195 (284)
T 2rik_A          164 VEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF  195 (284)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCCBC
T ss_pred             cccCEEEEEEEEcCCCceeEEEEEEEecCCcc
Confidence            99999999999999999999999999877654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.84  E-value=8.3e-21  Score=203.55  Aligned_cols=165  Identities=24%  Similarity=0.426  Sum_probs=131.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+....+.+|+++.|.|.+.+.|.+.+.|+|++..+......+.....++.|.|.+++.+|+|.|+|.|.|         
T Consensus       106 ~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  185 (291)
T 1qz1_A          106 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK  185 (291)
T ss_dssp             CCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             CCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeE
Confidence            45667899999999999999999999999998877654444455556678999999999999999999987         


Q ss_pred             -------CCCEEEEcC--ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC--ceEEEeecCCCceeeEeEEEE
Q psy12803        368 -------VPPQILIRN--RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG--VKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       368 -------~~P~i~~~p--~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~--~~~~~~~~~~~s~~~~stL~I  436 (902)
                             .+|.+....  ....+.+|+++.|.|.+.+.|.|.+.|++++..+.....  .++....  .     .++|.|
T Consensus       186 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~--~-----~~~L~i  258 (291)
T 1qz1_A          186 DIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD--D-----SSELTI  258 (291)
T ss_dssp             EEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECT--T-----SCEEEE
T ss_pred             EEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcC--C-----CcEEEE
Confidence                   234444332  245677899999999999999999999998876644321  2333221  1     135999


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .+++.+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       259 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          259 RNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            99999999999999999999999999999874

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.84  E-value=7.9e-21  Score=196.05  Aligned_cols=176  Identities=16%  Similarity=0.185  Sum_probs=129.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      +..+.+.+|++++|.|.+.+.|.+.+.|+|++..+.......  .......+|.|.+++.+|+|.|+|.|.|        
T Consensus        26 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  105 (231)
T 3ojm_B           26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT  105 (231)
T ss_dssp             CSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccccc
Confidence            466889999999999999999999999999876654332221  2233456899999999999999999987        


Q ss_pred             ----------CCCEEEE-cCceeeeecCceEEEEEEeeccCCceEEEEe----cCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 ----------VPPQILI-RNRRVGVPIGRTATLECEVEAFPLSVRYWEF----IDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 ----------~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k----~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                .+|.+.. .+....+.+|+.+.|.|.+.+.|.|.+.|++    ++..+.....................+
T Consensus       106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  185 (231)
T 3ojm_B          106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE  185 (231)
T ss_dssp             EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred             EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence                      1222222 2455778899999999999999999999998    554443322222222211111111234


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPV  473 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~  473 (902)
                      +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...+..+
T Consensus       186 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             EEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence            69999999999999999999999999999999998876653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.84  E-value=3e-20  Score=193.77  Aligned_cols=188  Identities=18%  Similarity=0.240  Sum_probs=133.1

Q ss_pred             cCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCc--cceeccCCcEEEEeeeeecCceeE
Q psy12803        285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--KDSAVASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       285 vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~--~~~~~~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      .+|.+..+. +..+..+.+.+|++++|.|.+.+.|.+.+.|+|++..+......  ........+|.|.+++.+|+|.|+
T Consensus        10 ~~P~~~~p~-~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~   88 (241)
T 3grw_A           10 GAPYWTRPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT   88 (241)
T ss_dssp             -CCEESSGG-GGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             CCceeEcCC-CCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEE
Confidence            455554443 23456688999999999999999999999999987665433221  123344568999999999999999


Q ss_pred             EeecC------------------CCCEEEE-cCceeeeecCceEEEEEEeeccCCceEEEEe----cCCeeeecCCceEE
Q psy12803        363 CLADN------------------VPPQILI-RNRRVGVPIGRTATLECEVEAFPLSVRYWEF----IDGTLIEHDGVKYS  419 (902)
Q Consensus       363 C~A~N------------------~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k----~~~~l~~~~~~~~~  419 (902)
                      |.|.|                  .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+.........
T Consensus        89 C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  168 (241)
T 3grw_A           89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT  168 (241)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEE
T ss_pred             EEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeee
Confidence            99987                  1233332 3456678899999999999999999999998    55544332222221


Q ss_pred             Ee-ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCC
Q psy12803        420 IS-DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPV  473 (902)
Q Consensus       420 ~~-~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~  473 (902)
                      .. ..........++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..++.++
T Consensus       169 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          169 VLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-------
T ss_pred             eeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCC
Confidence            11 1111122345679999999999999999999999999999999998876653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.84  E-value=3e-20  Score=190.83  Aligned_cols=167  Identities=23%  Similarity=0.366  Sum_probs=129.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccC--CcEEEEeeee-ecCceeEEeecC---
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVAS--STLNFTRINR-INMGAYMCLADN---  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~--~sL~I~~Vt~-~DsG~YtC~A~N---  367 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.|.|+|++..+..... .......+  .+|.|.+++. +|+|.|+|.|.|   
T Consensus        10 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g   89 (212)
T 2yd1_A           10 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG   89 (212)
T ss_dssp             EECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSS
T ss_pred             EcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCC
Confidence            3456778899999999999999999999999998765542221 11111223  4899999999 999999999988   


Q ss_pred             ------------C-------CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCce
Q psy12803        368 ------------V-------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY  428 (902)
Q Consensus       368 ------------~-------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~  428 (902)
                                  .       .|.+...+....+.+|+.++|.|.+.+.|.|.+.|++++..+... ..++.+.   .   
T Consensus        90 ~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~---~---  162 (212)
T 2yd1_A           90 DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS-NPRYSLK---D---  162 (212)
T ss_dssp             CEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTT-STTEEEE---T---
T ss_pred             CeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccC-CCeEEcc---C---
Confidence                        1       167777777778889999999999999999999999987766432 2233222   1   


Q ss_pred             eeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE-EEEEeecCCC
Q psy12803        429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGS-LILFESNAKT  471 (902)
Q Consensus       429 ~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s-~~L~V~~~p~  471 (902)
                         .+|.|.+++.+|+|.|+|.|.|..|...+. +.|.|.....
T Consensus       163 ---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          163 ---GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             ---TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ---CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence               249999999999999999999999999765 8898886543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.84  E-value=3.5e-20  Score=186.16  Aligned_cols=163  Identities=18%  Similarity=0.234  Sum_probs=126.6

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCcccee----ccCCcEEEEeeeeecCceeEEeecC---
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSA----VASSTLNFTRINRINMGAYMCLADN---  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N---  367 (902)
                      ..+.++.+.+|++++|.|.+.+.| .+.+.|+|.++..+.....+...    ....+|.|.+++.+|+|.|+|.+.|   
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   86 (191)
T 1epf_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   86 (191)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             ecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCC
Confidence            356678899999999999999976 88999999444433322222222    2346899999999999999999988   


Q ss_pred             ------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        368 ------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 ------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                                  .+|.+...+....+.+|+++.|.|.+.+.|.|.+.|++++..+......++....  ++.      |.
T Consensus        87 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~------L~  158 (191)
T 1epf_A           87 TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNY------LQ  158 (191)
T ss_dssp             EEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT--TSC------EE
T ss_pred             cceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEec--CCe------EE
Confidence                        5677777777788899999999999999999999999988776544444444332  222      99


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |.+++.+|+|.|+|.|.|..+.......+.|
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          159 IRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             ETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            9999999999999999999976655555544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.83  E-value=9.2e-21  Score=203.20  Aligned_cols=166  Identities=21%  Similarity=0.384  Sum_probs=125.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+....+.+|+++.|.|.+.+.|.+.+.|++++..+......+.....+++|.|.+++.+|+|.|+|.|.|         
T Consensus       104 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~  183 (291)
T 2wim_A          104 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR  183 (291)
T ss_dssp             CCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred             CCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEe
Confidence            34567899999999999999999999999998877654444455556677999999999999999999987         


Q ss_pred             -------CCCEEEEcCc--eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEec
Q psy12803        368 -------VPPQILIRNR--RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       368 -------~~P~i~~~p~--~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                             .+|.+.....  ...+.+|+.+.|.|.+.+.|.|.+.|++++..+....  ++.+.. ..      ++|.|.+
T Consensus       184 ~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~--~~~~~~-~~------~~L~i~~  254 (291)
T 2wim_A          184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKG-SN------TELTVRN  254 (291)
T ss_dssp             EEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTT--TEEECS-TT------CEEEEES
T ss_pred             eEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCc--cEEEcC-Cc------cEEEEee
Confidence                   2333322222  3456789999999999999999999999876654322  233221 11      3499999


Q ss_pred             cCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        439 VNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      ++.+|+|.|+|.|.|..|..++++.|.|..++.
T Consensus       255 ~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          255 IINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             CCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             CCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            999999999999999999999999999987654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=3.1e-20  Score=187.36  Aligned_cols=160  Identities=20%  Similarity=0.326  Sum_probs=127.8

Q ss_pred             cCCcEEEEcCCeEEEEEe-cCCCCC-CceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        297 SSSPIVVREGDNVRLRCV-ATGHPK-PSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~-a~G~P~-p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      .+..+.+.+|+++.|.|. +.+.|. +.+.|+|++..+..... .......+++|.|.+++.+|+|.|+|.+.|      
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            345688999999999999 888898 99999998876643222 233444567899999999999999999987      


Q ss_pred             ------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCcee
Q psy12803        368 ------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ  429 (902)
Q Consensus       368 ------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~  429 (902)
                                        .+|.+...+....+.+|+.++|.|.+.+.|.|.+.|++++..+..  ..++.   ...    
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~--~~~~~---~~~----  164 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS--TAEIS---TSG----  164 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT--TCEEE---TTT----
T ss_pred             hhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC--ceeec---CCC----
Confidence                              123444445567788999999999999999999999998875532  22221   112    


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                        .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       165 --~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          165 --AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             --TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence              249999999999999999999999999999999886

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.83  E-value=4.7e-20  Score=190.25  Aligned_cols=172  Identities=13%  Similarity=0.180  Sum_probs=123.0

Q ss_pred             cCCcEEEEcC--CeEEEEEecCCCCCCceEEecC--CCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        297 SSSPIVVREG--DNVRLRCVATGHPKPSIIWKTS--ENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       297 ~~~~v~v~eG--e~v~L~C~a~G~P~p~v~W~k~--~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      .+..+.+.+|  ++|+|.|.+.+ |.+.++|+|.  ++..+... ..........|.|.+++.+|+|.|+|.|.|     
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG-NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS-SSCEEETTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC-CcccccCCccEEEccCChhcCceEEEEEEECCeeE
Confidence            3456889999  99999999987 7799999885  45444333 233344567899999999999999999987     


Q ss_pred             ------------CCCEEEEcC-ceeeeecCceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEeecCC--Cceee
Q psy12803        368 ------------VPPQILIRN-RRVGVPIGRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSISDVDK--GSYQY  430 (902)
Q Consensus       368 ------------~~P~i~~~p-~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~--~s~~~  430 (902)
                                  .+|.+...+ ..+.+.+|++++|.|.+.+.|.  +.+.|++++..+.... ..........  .....
T Consensus        91 ~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~  169 (213)
T 2x1w_L           91 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK-LVNRDLKTQSGSEMKKF  169 (213)
T ss_dssp             ECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEE-EEEEEECCCSSCSCEEE
T ss_pred             EEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEE-EeccccccccCccceee
Confidence                        022233333 3347899999999999998664  4799998887542110 0000111101  01344


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.+.
T Consensus       170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            66899999999999999999999999999999999987654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.83  E-value=1.5e-20  Score=223.19  Aligned_cols=192  Identities=18%  Similarity=0.344  Sum_probs=146.9

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV  343 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~  343 (902)
                      .|.+.|..+..... ..+.+..+|.+..     .+.++.+.+|+++.|.|.+.|.|.|.|+|+|++..+...... ....
T Consensus       363 ~C~a~N~~g~~~~~-~~l~V~~~P~~~~-----~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~  435 (570)
T 3b43_A          363 TCEAHNAAGSASSS-TSLKVKEPPVFRK-----KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY-KIMS  435 (570)
T ss_dssp             EEEEEBTTBCCEEE-EEECEECCCEECS-----CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSE-EEEE
T ss_pred             EEEEEeCCCEEEEE-EEEEecCCCeeec-----CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCE-EEEE
Confidence            46666666554332 2444555665432     345678899999999999999999999999987655332221 1122


Q ss_pred             cC--CcEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC
Q psy12803        344 AS--STLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID  407 (902)
Q Consensus       344 ~~--~sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~  407 (902)
                      .+  .+|.|.+++.+|+|.|+|.|.|              .+|.|...+.++.+.+|+.+.|.|.+.|.|.|.|.|++++
T Consensus       436 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~  515 (570)
T 3b43_A          436 ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK  515 (570)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETT
T ss_pred             cCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCC
Confidence            22  4799999999999999999999              6888888888888999999999999999999999999987


Q ss_pred             CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +.+.... .++.+.....     .++|.|.+++.+|+|.|+|+|.|.+|.+++++.|.|.+
T Consensus       516 ~~~~~~~-~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e  570 (570)
T 3b43_A          516 GEIVRES-DNIWISYSEN-----IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE  570 (570)
T ss_dssp             EECCCCT-TTEEECCCSS-----EEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             eEeccCC-CeEEEEECCC-----EEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence            6654432 2333322221     34699999999999999999999999999999998863

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.83  E-value=2.8e-20  Score=209.53  Aligned_cols=159  Identities=25%  Similarity=0.486  Sum_probs=130.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+..+.+.+|+++.|.|.+.|.|.|.+.|+|+++..+...  ......+++|.|.+++.+|+|.|+|.|.|         
T Consensus       211 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  288 (384)
T 3kld_A          211 FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK--ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG  288 (384)
T ss_dssp             CCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT--CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc--ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            3556788999999999999999999999999766544322  22334567899999999999999999998         


Q ss_pred             -----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 -----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 -----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                           .+|.+...+.+..+.+|+++.|.|.+.|.|.|.|.|++++..+....  ++.+.   .      .+|.|.+++.+
T Consensus       289 ~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~~~~---~------~~L~i~~v~~~  357 (384)
T 3kld_A          289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD--RIQIE---Q------GTLNITIVNLS  357 (384)
T ss_dssp             EEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBT--TEEEE---T------TEEEESSCCGG
T ss_pred             EEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCc--cEEEe---C------CEEEEeecChh
Confidence                 46677777777889999999999999999999999999887764332  22221   1      14999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |+|.|+|+|.|.+|...+++.|.|..
T Consensus       358 D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          358 DAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             hCEEEEEEEEeCCceEEeceEEEEec
Confidence            99999999999999999999999863

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.83  E-value=2.6e-20  Score=199.19  Aligned_cols=162  Identities=22%  Similarity=0.390  Sum_probs=129.4

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN----------  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N----------  367 (902)
                      ....+.+|+++.|.|.+.+.|.+.+.|+|++..+.......... .....|.|.+++.+|+|.|+|.|.|          
T Consensus       107 ~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  186 (284)
T 2rik_A          107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS  186 (284)
T ss_dssp             SEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEE
Confidence            34678999999999999999999999999876654333222221 2335799999999999999999998          


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                          .+|.+...+....+.+|+++.|.|.+.+.|.|.+.|++++..+.....  +.+....     ..++|.|.+++.+|
T Consensus       187 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~--~~~~~~~-----~~~~L~i~~v~~~d  259 (284)
T 2rik_A          187 LKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK--YKIMSEN-----FLTSIHILNVDSAD  259 (284)
T ss_dssp             EEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTT--EEEEEET-----TEEEEEECSCCGGG
T ss_pred             EEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCC--EEEEEcC-----CEEEEEEcCCCccc
Confidence                566666666677889999999999999999999999998877654332  2222221     13469999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEee
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|+|.|.|..|..+.++.|.|.
T Consensus       260 ~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          260 IGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEEEEeCCCceeEEEEEEEc
Confidence            999999999999999999999886

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=187.18  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=127.4

Q ss_pred             eeecCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCC--ccceecc--------CCcEEEEeeeeecCceeE
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGS--WKDSAVA--------SSTLNFTRINRINMGAYM  362 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~--~~~~~~~--------~~sL~I~~Vt~~DsG~Yt  362 (902)
                      ++..+.++.+.+|++++|.|.+. +.|.+.+.|+|++..+.....  .+.....        .++|.|.+++.+|+|.|+
T Consensus         5 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   84 (195)
T 2c5d_C            5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQ   84 (195)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEE
T ss_pred             eccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEE
Confidence            34466788999999999999999 899999999997765543211  1122222        358999999999999999


Q ss_pred             EeecC---------------CCCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCC
Q psy12803        363 CLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKG  426 (902)
Q Consensus       363 C~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~  426 (902)
                      |.|.|               .+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+......          
T Consensus        85 C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----------  154 (195)
T 2c5d_C           85 CLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----------  154 (195)
T ss_dssp             EEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----------
T ss_pred             EEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----------
Confidence            99987               56777777777889999999999999999999 99999988766432221          


Q ss_pred             ceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEe
Q psy12803        427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFE  466 (902)
Q Consensus       427 s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V  466 (902)
                        ....+|.|.+++  |+|.|+|.|.|..|... .++.|.|
T Consensus       155 --~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 --GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             --SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence              112459999987  89999999999999986 7888888

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.82  E-value=3.8e-20  Score=190.29  Aligned_cols=168  Identities=21%  Similarity=0.272  Sum_probs=125.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec---cCCcEEEEee-eeecCceeEEeecC----
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV---ASSTLNFTRI-NRINMGAYMCLADN----  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~~sL~I~~V-t~~DsG~YtC~A~N----  367 (902)
                      ..+.++.+.+|+++.|.|.+.+.|.+.|.|+|++..+... .......   ....|.|.++ +.+|+|.|+|.|.|    
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~   89 (212)
T 2yd6_A           11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE   89 (212)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCT-TEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEE
T ss_pred             eCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC-ceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCc
Confidence            3566788999999999999999999999999987654322 2111111   2347999999 59999999999988    


Q ss_pred             ----------C-------CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC-CceEEEeecCCCcee
Q psy12803        368 ----------V-------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD-GVKYSISDVDKGSYQ  429 (902)
Q Consensus       368 ----------~-------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~-~~~~~~~~~~~~s~~  429 (902)
                                .       .|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+.... ..++.......    
T Consensus        90 ~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~----  165 (212)
T 2yd6_A           90 ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSES----  165 (212)
T ss_dssp             EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETT----
T ss_pred             EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCC----
Confidence                      1       2667777777788999999999999999999999999887665431 12232222111    


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEeecC
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFESNA  469 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~~  469 (902)
                       .++|.|.+++.+|+|.|+|.|.|.+|... ..+.|.|...
T Consensus       166 -~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~  205 (212)
T 2yd6_A          166 -IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT  205 (212)
T ss_dssp             -EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             -eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence             35699999999999999999999999884 5566666544

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.82  E-value=5.8e-20  Score=183.35  Aligned_cols=155  Identities=19%  Similarity=0.314  Sum_probs=122.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+............   .++|.|.+++.+|+|.|+|.+.|      
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   87 (182)
T 1rhf_A            8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   87 (182)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEE
Confidence            455688999999999999999999999999977654332221111111   25899999999999999999988      


Q ss_pred             ---------CCCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 ---------VPPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 ---------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                               .+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.....              ..++|.|.
T Consensus        88 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~--------------~~~~L~i~  153 (182)
T 1rhf_A           88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------------SPSVLNVT  153 (182)
T ss_dssp             CCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE--------------SSEEEEEC
T ss_pred             EEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC--------------CceEEEEe
Confidence                     57777777777889999999999999999999 9999998766532110              12359999


Q ss_pred             ccCCCCCeEEEEEEEeCCceeE-EEEEEEee
Q psy12803        438 NVNISDFDTYRCISKNEVDIAK-GSLILFES  467 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~  467 (902)
                      ++  +|+|.|+|.|.|..|... .++.|.|+
T Consensus       154 ~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          154 GV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             CC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            88  599999999999999885 47777763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=185.33  Aligned_cols=164  Identities=19%  Similarity=0.275  Sum_probs=125.4

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC-----
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      ..+.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+.....  .....++   +|.|.+++.+|+|.|+|.|.|     
T Consensus        12 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~   89 (197)
T 3lcy_A           12 KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRK--YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV   89 (197)
T ss_dssp             ECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSS--EEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE
T ss_pred             ccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCcc--EEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce
Confidence            355678999999999999999999999999998766543222  2222222   799999999999999999998     


Q ss_pred             ---------CCCEEEEc---CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        368 ---------VPPQILIR---NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 ---------~~P~i~~~---p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                               .+|.+...   +....+.+|+.+.|.|.+.+.|.|.+.|++++..+...  .++.+.....     .++|.
T Consensus        90 ~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~~~~~~~-----~~~L~  162 (197)
T 3lcy_A           90 ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS--ENITIENTEH-----YTHLV  162 (197)
T ss_dssp             EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC--SSEEEEECSS-----EEEEE
T ss_pred             eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC--CceEEEEcCC-----EEEEE
Confidence                     12222211   23456788999999999999999999999887666432  2333322221     24699


Q ss_pred             EeccCC-CCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        436 ISNVNI-SDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       436 I~~V~~-~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       163 i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          163 MKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             ESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            999995 899999999999999999999999875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.82  E-value=4.7e-20  Score=207.19  Aligned_cols=195  Identities=25%  Similarity=0.381  Sum_probs=147.6

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCc-eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSE-HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA  342 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~-~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~  342 (902)
                      .|.+.|..+........+.+...|.+.... .+..+..+.+.+|++++|.|.+.+.|.+.+.|+|++..+. ........
T Consensus       193 ~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~-~~~~~~~~  271 (403)
T 3laf_A          193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ-LRSKKYSL  271 (403)
T ss_dssp             EEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC-CSSSSEEE
T ss_pred             EEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeecc-CCCceEEE
Confidence            455555443333333344444455433222 2335667889999999999999999999999999765543 23334445


Q ss_pred             ccCCcEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC
Q psy12803        343 VASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG  408 (902)
Q Consensus       343 ~~~~sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~  408 (902)
                      ..+++|.|.+++.+|+|.|+|.|.|              .+|.+...+....+.+|+.++|.|.+.+.|.|.+.|++++.
T Consensus       272 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~  351 (403)
T 3laf_A          272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD  351 (403)
T ss_dssp             ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTE
T ss_pred             CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCE
Confidence            5667899999999999999999988              56777777778888999999999999999999999999887


Q ss_pred             eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      .+.....  +.+.  ..      ++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       352 ~~~~~~~--~~~~--~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          352 VVIPSDY--FQIV--GG------SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             ECCCSSS--EEEE--TT------TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             ECCCCCc--EEEe--cC------ccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence            6644322  2222  11      24999999999999999999999999999999999865

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.81  E-value=6e-20  Score=196.82  Aligned_cols=167  Identities=18%  Similarity=0.258  Sum_probs=128.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCccceec----cCCcEEEEeeeeecCceeEEeecC---
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAV----ASSTLNFTRINRINMGAYMCLADN---  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~~----~~~sL~I~~Vt~~DsG~YtC~A~N---  367 (902)
                      ..+.++.+.+|++++|.|.+.+.| .+.+.|+|.++..+.....+....    ...+|.|.+++.+|+|.|+|.|.|   
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   86 (291)
T 1qz1_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   86 (291)
T ss_dssp             EESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             ecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCC
Confidence            356678899999999999999976 689999994444433322222221    345899999999999999999988   


Q ss_pred             ------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        368 ------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 ------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                                  .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+......++....  .+.      |.
T Consensus        87 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~------L~  158 (291)
T 1qz1_A           87 TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNY------LQ  158 (291)
T ss_dssp             CEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECT--TSC------EE
T ss_pred             CeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEcc--CCc------EE
Confidence                        4666677777788999999999999999999999999988776544444443322  222      99


Q ss_pred             EeccCCCCCeEEEEEEEeCCcee--EEEEEEEeecCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIA--KGSLILFESNAK  470 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~~p  470 (902)
                      |.+++.+|+|.|+|.|.|..+..  ...+.|.|..+|
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p  195 (291)
T 1qz1_A          159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP  195 (291)
T ss_dssp             ETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEE
T ss_pred             EccCccccCeEEEEEEEecCCCceeeEEEEEEEecCC
Confidence            99999999999999999976433  456667766544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.81  E-value=2e-19  Score=201.34  Aligned_cols=172  Identities=21%  Similarity=0.306  Sum_probs=131.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecC--CCcccccC---Cccceec---cCCcEEEEeeeeecCceeEEeec
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTS--ENKPITLG---SWKDSAV---ASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~--~~~~~~~~---~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      +..+.+..+.+|++++|.|.+.|.|.+.|+|+|+  +..+....   ..+....   ..++|.|.+++.+|+|.|+|.|.
T Consensus         4 i~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   83 (389)
T 2jll_A            4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA   83 (389)
T ss_dssp             EEECCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             EEecCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEE
Confidence            3446678899999999999999999999999998  33322110   1122222   34589999999999999999999


Q ss_pred             C--------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        367 N--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       367 N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                      |              .+|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+......++.+.....     .+
T Consensus        84 n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~-----~~  158 (389)
T 2jll_A           84 SRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR-----KM  158 (389)
T ss_dssp             CSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSS-----CE
T ss_pred             eCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCC-----EE
Confidence            9              3555555555556789999999999999999999999988776544433444433222     24


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +|.|.+++.+|+|.|+|.|.|..|....++.|.|...|.
T Consensus       159 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~  197 (389)
T 2jll_A          159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS  197 (389)
T ss_dssp             EEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred             EEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC
Confidence            699999999999999999999999999988888865543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=183.59  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=121.4

Q ss_pred             EEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecCC------------
Q psy12803        303 VREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADNV------------  368 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N~------------  368 (902)
                      .-+++.+.|.|.+.+ .|.+.+.|+|++..+............ ..+|.|.+++.+|+|.|+|.|.|.            
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            347889999999998 468999999987665433222211211 135999999999999999999981            


Q ss_pred             ----------------------CCEEEE-cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCC
Q psy12803        369 ----------------------PPQILI-RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK  425 (902)
Q Consensus       369 ----------------------~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~  425 (902)
                                            .|.+.. .+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+.....  +.+.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~~~~~~  171 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH--CNLKFEAG  171 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSS--EEEEEETT
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCC--EEEEEcCC
Confidence                                  233333 34567889999999999999999999999998877654333  33322211


Q ss_pred             CceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        426 GSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       426 ~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .    .++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       172 ~----~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          172 R----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             T----EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             C----EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            1    24699999999999999999999999999999998874

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.7e-20  Score=197.83  Aligned_cols=163  Identities=19%  Similarity=0.310  Sum_probs=123.6

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLADN-------  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------  367 (902)
                      ..+....+.+|+++.|.|.+.+.|.+.+.|+|++..+..... .+.....++.|.|.+++.+|+|.|+|.|.|       
T Consensus       113 ~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  192 (304)
T 2yd9_A          113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS  192 (304)
T ss_dssp             ECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             cCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEe
Confidence            345667899999999999999999999999998766543322 223345567999999999999999999998       


Q ss_pred             -----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEE
Q psy12803        368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       368 -----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                                 .+|.+...+....+.+|++++|.|.+.+.|.|.+.|++++..+......       .    ....+|.|
T Consensus       193 ~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~-------~----~~~~~L~i  261 (304)
T 2yd9_A          193 SPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM-------P----VGRNVLEL  261 (304)
T ss_dssp             CCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC-------C----BSEEEEEE
T ss_pred             ccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc-------c----CCcEEEEE
Confidence                       2345555566667889999999999999999999999987665432211       0    11234777


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .++  +|+|.|+|.|.|..|..+.++.|.|...+.
T Consensus       262 ~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          262 TDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             CSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             ccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence            666  699999999999999999999999987654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.81  E-value=1.2e-19  Score=203.56  Aligned_cols=158  Identities=20%  Similarity=0.329  Sum_probs=129.0

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------------
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------------  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------------  367 (902)
                      ...+.+|+++.|.|.+.+.|.+.+.|+|++..+....  ......+++|.|.+++.+|+|.|+|.|.|            
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  308 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK--AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR  308 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTT--EEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCc--ccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEE
Confidence            4678999999999999999999999999876653222  23334467899999999999999999998            


Q ss_pred             --CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC-ceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 --VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG-VKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 --~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                        .+|.+...+....+.+|+.++|.|.+.+.|.|.+.|++++..+..... ......         ..+|.|.+++.+|+
T Consensus       309 V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---------~~~L~i~~v~~~d~  379 (404)
T 3p3y_A          309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVA---------GDTIIFRDTQISSR  379 (404)
T ss_dssp             EEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEE---------TTEEEESSCCSSCC
T ss_pred             EeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEec---------CCEEEEeecCHHHC
Confidence              467777777778899999999999999999999999998776643221 111111         12499999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeec
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|+|.|.|..|....++.|.|.+
T Consensus       380 G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          380 AVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999998864

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=6.8e-19  Score=176.06  Aligned_cols=157  Identities=18%  Similarity=0.273  Sum_probs=121.0

Q ss_pred             EEEEcCCeEEEEEecCCCCCC--ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-----------
Q psy12803        301 IVVREGDNVRLRCVATGHPKP--SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-----------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----------  367 (902)
                      ..+.+|++++|.|.+.+.|.+  .+.|+|++..+.....    ......|.|.  +.+|+|.|+|.|.|           
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~----~~~~~~l~i~--~~~d~G~Y~C~~~n~~~~~~~l~V~   81 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL----PGQKTEFKVD--SDDQWGEYSCVFLPEPMGTANIQLH   81 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC----CCSEEEEEEC--GGGCCEEEEEEEESTTSCEEEEEEC
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc----cCCcEEEEEe--chhhCeEEEEEEECCcCcEEEEEEe
Confidence            568899999999999987777  8999997755432211    1112345555  68999999999997           


Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEe---cCCeeeecC-CceEEEeecCCCceeeEeEEEEeccC-C
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEF---IDGTLIEHD-GVKYSISDVDKGSYQYIMQLNISNVN-I  441 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k---~~~~l~~~~-~~~~~~~~~~~~s~~~~stL~I~~V~-~  441 (902)
                      .+|.+...+....+.+|+.+.|.|.+.+.| .|.+.|++   ++..+.... ..++.+.....     .++|.|.+++ .
T Consensus        82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~  156 (184)
T 3b5h_A           82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG-----RSELHIENLNME  156 (184)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT-----EEEEEECSCCTT
T ss_pred             cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCC-----eeEEEEeecccc
Confidence            677777777777899999999999999999 79999999   555544322 23444433221     3469999999 9


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|+|.|+|.|.|..|..+.++.|.|..
T Consensus       157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          157 ADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ccCceEEEEEEeCCCcceEEEEEEEec
Confidence            999999999999999999999998864

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.80  E-value=3.4e-19  Score=192.57  Aligned_cols=171  Identities=22%  Similarity=0.272  Sum_probs=129.6

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-eccCC--cEEEEeeeeecCceeEEeecC----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASS--TLNFTRINRINMGAYMCLADN----  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-~~~~~--sL~I~~Vt~~DsG~YtC~A~N----  367 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+......... ...++  +|.|.+++.+|+|.|+|.|.|    
T Consensus         8 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~   87 (305)
T 2nzi_A            8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS   87 (305)
T ss_dssp             EECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             eecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCC
Confidence            34566789999999999999999999999999987665433221111 12233  899999999999999999988    


Q ss_pred             ----------CCCEEEEc-----CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 ----------VPPQILIR-----NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 ----------~~P~i~~~-----p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                .+|.+...     +..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+.....  +.+.....     ..
T Consensus        88 ~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~-----~~  160 (305)
T 2nzi_A           88 VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGH--YQVIVTRS-----FT  160 (305)
T ss_dssp             EEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSS--CEEEECSS-----EE
T ss_pred             ccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCc--EEEEEcCC-----ce
Confidence                      12222111     1345678899999999999999999999998776643322  22222111     24


Q ss_pred             EEEEec-cCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        433 QLNISN-VNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       433 tL~I~~-V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.+ ++.+|+|.|+|.|.|..|..+.++.|.|...|..
T Consensus       161 ~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  201 (305)
T 2nzi_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP  201 (305)
T ss_dssp             EEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCC
T ss_pred             EEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCC
Confidence            599999 9999999999999999999999999999876543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.80  E-value=5.4e-19  Score=177.22  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=120.4

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC------------Cccce------eccCCcEEEEeeeeecCcee
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG------------SWKDS------AVASSTLNFTRINRINMGAY  361 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~------------~~~~~------~~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++...+...            ..+..      .....+|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            3678999999999999999999999999876422210            01111      11234699999999999999


Q ss_pred             EEeecCC--CCE----EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        362 MCLADNV--PPQ----ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       362 tC~A~N~--~P~----i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                      +|.+.|.  ...    ....+....+.+|++++|.|.+.+.|.|.+.|++++..+..           .      ..+|.
T Consensus        84 ~C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-----------~------~~~L~  146 (184)
T 2ny1_B           84 ICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-----------G------GKTLS  146 (184)
T ss_dssp             EEEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE-----------E------SSEEE
T ss_pred             EEEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc-----------C------ceEEE
Confidence            9999991  001    11124456789999999999999999999999988765411           1      12499


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |.+++.+|+|.|+|.|.|..+..+.++.|.|...+.
T Consensus       147 i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          147 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             EecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            999999999999999999999999999999987654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.80  E-value=2.1e-19  Score=192.60  Aligned_cols=168  Identities=21%  Similarity=0.313  Sum_probs=122.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC---CcEEEEeeeeecCceeEEeecC----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS---STLNFTRINRINMGAYMCLADN----  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---~sL~I~~Vt~~DsG~YtC~A~N----  367 (902)
                      ...+.++.+.+|++++|.|.+.+.|. .+.|+|.++..+.... +.....+   .+|.|.+++.+|+|.|+|.|.|    
T Consensus         8 ~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~   85 (291)
T 2wim_A            8 TISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQ-RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   85 (291)
T ss_dssp             EESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBT-TEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSC
T ss_pred             EEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCC-cEEEecCCCEEEEEEccCCcccCEEEEEEEecccCc
Confidence            33566788999999999999999875 8999995554443322 2222222   4899999999999999999988    


Q ss_pred             -----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEE
Q psy12803        368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       368 -----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                                 .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++....  ..      +|.|
T Consensus        86 ~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~------~L~i  157 (291)
T 2wim_A           86 TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA--NN------NLQI  157 (291)
T ss_dssp             EEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT--TS------CEEE
T ss_pred             eEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc--CC------CEEE
Confidence                       2333333455667899999999999999999999999988776544444444332  22      2999


Q ss_pred             eccCCCCCeEEEEEEEeCCcee--EEEEEEEeecCCCC
Q psy12803        437 SNVNISDFDTYRCISKNEVDIA--KGSLILFESNAKTP  472 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~~p~~  472 (902)
                      .+++.+|+|.|+|.|.|..+..  ...+.|.|..++..
T Consensus       158 ~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~  195 (291)
T 2wim_A          158 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI  195 (291)
T ss_dssp             TTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCC
T ss_pred             EecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCcc
Confidence            9999999999999999987543  45667777665543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.80  E-value=3.3e-19  Score=183.55  Aligned_cols=151  Identities=15%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+....+.+|++++|.|.+.+.|.+. +.|+|++..+..         ..++|.|.+++.+|+|.|+|.|.|        
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~   83 (204)
T 3sgj_C           13 EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS---------QASSYFIDAATVDDSGEYRCQTQLSTLSDPVQ   83 (204)
T ss_dssp             ESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESC---------CSSEEEESSCCGGGCEEEEEEETTSBCCCCEE
T ss_pred             cCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEccc---------CccEEEEecccccCCEEEEEEeCCCcccccEE
Confidence            44557899999999999999988776 999997654321         127899999999999999999998        


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                          .+|.+...+. ..+.+|++++|.|.+.+. |.+.+.|++++..+....         ..      .+|.|.+++.+
T Consensus        84 l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~---------~~------~~L~i~~v~~~  147 (204)
T 3sgj_C           84 LEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH---------HN------SDFYIPKATLK  147 (204)
T ss_dssp             EEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE---------EC------CCEEESSCCGG
T ss_pred             EEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc---------CC------ceEEECcCCcc
Confidence                3444444443 668899999999999766 668999998876653210         11      23999999999


Q ss_pred             CCeEEEEEEEe-CCceeEEEEEEEeecCCCC
Q psy12803        443 DFDTYRCISKN-EVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       443 DsG~YtC~A~N-~~G~~~~s~~L~V~~~p~~  472 (902)
                      |+|.|+|.|.| ..+..+..+.|.|..++..
T Consensus       148 D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~  178 (204)
T 3sgj_C          148 DSGSYFCRGLVGSKNVSSETVQITITQGLAV  178 (204)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             cCEEEEEEEEeCCCceecCcEEEEEeCcCCC
Confidence            99999999999 4455677888888876544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.80  E-value=1.2e-19  Score=184.53  Aligned_cols=165  Identities=22%  Similarity=0.363  Sum_probs=121.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccc---------cCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPIT---------LGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~---------~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+..         ............+|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~   86 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEc
Confidence            45668899999999999999999999999998766311         111122233348899999999999999999986


Q ss_pred             ----------------CCCEEEEcCceeeeecCceEEEEEE-eeccCCceEEEEecCC-eeeecCC-------ceEEEee
Q psy12803        368 ----------------VPPQILIRNRRVGVPIGRTATLECE-VEAFPLSVRYWEFIDG-TLIEHDG-------VKYSISD  422 (902)
Q Consensus       368 ----------------~~P~i~~~p~~~~v~~G~~v~L~C~-a~g~P~P~v~W~k~~~-~l~~~~~-------~~~~~~~  422 (902)
                                      .+|.+...+....+.+|+.++|.|. +.+.|.|.+.|++++. .+.....       ..+... 
T Consensus        87 ~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~-  165 (212)
T 1f97_A           87 EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID-  165 (212)
T ss_dssp             TTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEEC-
T ss_pred             cCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEec-
Confidence                            2233322233456889999999999 7999999999999887 5543221       112211 


Q ss_pred             cCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEeec
Q psy12803        423 VDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGSLILFESN  468 (902)
Q Consensus       423 ~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~  468 (902)
                      ...      ++|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.+
T Consensus       166 ~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          166 PKS------GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             TTT------CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             CCC------ceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            112      349999999999999999999999988  5566666654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.80  E-value=4e-19  Score=183.81  Aligned_cols=152  Identities=22%  Similarity=0.303  Sum_probs=124.4

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      .+..+.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+..        ....+|.|.+++.+|+|.|+|.|.|      
T Consensus        21 i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~   92 (218)
T 3k0w_A           21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN--------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEF   92 (218)
T ss_dssp             EEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTT--------CCSSEEEETTCCGGGCEEEEEEEECTTCCEE
T ss_pred             EEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCC--------CCCCEEEEccCChhhCeEeEEEEEcCCCCce
Confidence            34466778999999999999999999999999997655422        1356899999999999999999998      


Q ss_pred             ---------CC---------------CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeec
Q psy12803        368 ---------VP---------------PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDV  423 (902)
Q Consensus       368 ---------~~---------------P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~  423 (902)
                               ..               |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         
T Consensus        93 s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~---------  163 (218)
T 3k0w_A           93 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------  163 (218)
T ss_dssp             CCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC---------
T ss_pred             eeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC---------
Confidence                     11               566666677889999999999999999999999999876553211         


Q ss_pred             CCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce-eEEEEEEEeecC
Q psy12803        424 DKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI-AKGSLILFESNA  469 (902)
Q Consensus       424 ~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~-~~~s~~L~V~~~  469 (902)
                       .      .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...
T Consensus       164 -~------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          164 -K------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             -S------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             -C------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence             1      23999999999999999999999988 467778887663

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.80  E-value=6.2e-19  Score=189.51  Aligned_cols=168  Identities=16%  Similarity=0.232  Sum_probs=127.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecC-------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADN-------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N-------  367 (902)
                      .+..+.+.+|+++.|.|.+.+ |. +.++|++.++..+.. ..+.....++.|.|.+++.+|+| .|+|.|.|       
T Consensus        97 ~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~-~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s  174 (290)
T 2o26_X           97 VGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPT-DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS  174 (290)
T ss_dssp             CCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCT-TCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEEC
T ss_pred             cccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCC-CCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEe
Confidence            455688899999999999996 87 999995434444332 22334455678999999999999 99999988       


Q ss_pred             ------------CCCEEEEcCceeeeecCceEEEEEEeeccCCce-EEEEecCCee----eecCCceEEEeecCCCceee
Q psy12803        368 ------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTL----IEHDGVKYSISDVDKGSYQY  430 (902)
Q Consensus       368 ------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l----~~~~~~~~~~~~~~~~s~~~  430 (902)
                                  .+|.+...+....+.+|++++|.|.+.+.|.|. +.|++++..+    .......+.    .......
T Consensus       175 ~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~  250 (290)
T 2o26_X          175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR----GDFNYER  250 (290)
T ss_dssp             CCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEE----ETTEEEE
T ss_pred             EEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccccc----CceeeEE
Confidence                        345666666667889999999999999999996 9999998774    222221111    1112234


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      .++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       251 ~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          251 QETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             EEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             EEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            5679999999999999999999999999999999987653

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.80  E-value=7.3e-19  Score=188.19  Aligned_cols=171  Identities=15%  Similarity=0.201  Sum_probs=131.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeec-C-----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLAD-N-----  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~-N-----  367 (902)
                      +..+..+.+.+|+++.|.|.+.+.+.+. +.|++.++..+... .+.....++.|.|.+++.+|+|.|+|.|. |     
T Consensus        93 ~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~  171 (289)
T 3ejj_X           93 NLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK-TVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST  171 (289)
T ss_dssp             EESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT-CCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCC-ccEEECCCCCEEEeecccccCEEEEEEEEeCCCccc
Confidence            3445678899999999999999977665 99987665544322 23444566789999999999999999998 4     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                                   .+|.+...+....+.+|+++.|.|.+.+ .|.+.+.|++++..+....  ....   ........++
T Consensus       172 ~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~--~~~~---~~~~~~~~~~  246 (289)
T 3ejj_X          172 STGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL--NSDF---QDNYYKKVRA  246 (289)
T ss_dssp             CCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE--EEEE---CSSSEEEEEE
T ss_pred             cccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC--Cccc---ccceEEeeEE
Confidence                         3566777777777789999999999998 7999999999876653211  1111   1222334667


Q ss_pred             EEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        434 LNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |.|.+++.+|+|.|+|.|.|..|..++++.|.+...+.
T Consensus       247 L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             EEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             EEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            99999999999999999999999999999999876543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.79  E-value=6e-19  Score=191.73  Aligned_cols=167  Identities=20%  Similarity=0.307  Sum_probs=126.5

Q ss_pred             cEEEEcCCeEEEEEec------CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeec-C-----
Q psy12803        300 PIVVREGDNVRLRCVA------TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLAD-N-----  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a------~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~-N-----  367 (902)
                      ...+.+|+++.|.|.+      .+.|.+.+.|+|++..+....  ......++.|.|.+++.+|+|.|+|.|. |     
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS--SSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             ceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc--ceEeecCceEEEEeceehhCcEEEEEEEcCCCCcE
Confidence            3578899999999998      889999999999876654322  2334456799999999999999999999 5     


Q ss_pred             -----------------CCCEEEEcCce-eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCc----eEEEeecCC
Q psy12803        368 -----------------VPPQILIRNRR-VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV----KYSISDVDK  425 (902)
Q Consensus       368 -----------------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~----~~~~~~~~~  425 (902)
                                       .+|.+...+.. +.+.+|+.++|.|.+.+.|.|.+.|++++..+......    .+.+.....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~  269 (315)
T 1itb_B          190 YPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN  269 (315)
T ss_dssp             EEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSC
T ss_pred             EEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCC
Confidence                             23444333332 46889999999999999999999999987666443221    111111111


Q ss_pred             -CceeeEeEEEEeccCCCC-CeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        426 -GSYQYIMQLNISNVNISD-FDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       426 -~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                       ......++|.|.+++.+| +|.|+|.|.|..|...+++.|.|..
T Consensus       270 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             GGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence             112245679999999999 9999999999999999999998853

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.79  E-value=2.1e-19  Score=184.48  Aligned_cols=167  Identities=25%  Similarity=0.362  Sum_probs=123.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccCCcE----EEEeeeeecCceeEEeecC--
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTL----NFTRINRINMGAYMCLADN--  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL----~I~~Vt~~DsG~YtC~A~N--  367 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.|.|+|++..+..... .......++.+    .|.+++.+|+|.|+|.|.|  
T Consensus        13 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~   92 (217)
T 2vr9_A           13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRV   92 (217)
T ss_dssp             EECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETT
T ss_pred             ecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCC
Confidence            3456678899999999999999999999999997765543221 11222333333    6889999999999999987  


Q ss_pred             --------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecC------CceEEEeecCCC
Q psy12803        368 --------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHD------GVKYSISDVDKG  426 (902)
Q Consensus       368 --------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~------~~~~~~~~~~~~  426 (902)
                                    .++.+...+....+.+|+.+.|.|.+ .+.|.|.+.|++++..+....      ..++...  .  
T Consensus        93 g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~--~--  168 (217)
T 2vr9_A           93 GQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV--D--  168 (217)
T ss_dssp             EEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE--T--
T ss_pred             CccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec--C--
Confidence                          12333334456678899999999999 899999999999877664321      1112211  1  


Q ss_pred             ceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       427 s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                          ..+|.|.+++.+|+|.|+|.|.|..|....++.+.+...
T Consensus       169 ----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          169 ----GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             ----TTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             ----CCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence                124999999999999999999999999987766666543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.79  E-value=1.8e-19  Score=212.48  Aligned_cols=192  Identities=12%  Similarity=0.114  Sum_probs=139.3

Q ss_pred             ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCcc--
Q psy12803        263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWK--  339 (902)
Q Consensus       263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~--  339 (902)
                      -.|.+.|..+........+.+..+|.+       .+.++.+.+|+++.|.|.+. +.|.+.|+|+|++..+.......  
T Consensus       206 Y~C~A~N~~G~~~~~~~~l~V~~~p~~-------~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~  278 (527)
T 3qs9_E          206 IRCCARNELGRECTRLFTIDLNQTPQT-------TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMS  278 (527)
T ss_dssp             EEEEEECSSCEEEEECEEEESSSCCCC-------SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEE
T ss_pred             EEEEEEeCCCcccceEEEEEEeccCcc-------CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeee
Confidence            567777766554443333444444443       23467899999999999997 89999999999887654321110  


Q ss_pred             -----ceeccCCcEEEEeeeeecCceeEEeecC-----------CCCEEEEcC--ceeeeecCceEEEEEEeeccCCceE
Q psy12803        340 -----DSAVASSTLNFTRINRINMGAYMCLADN-----------VPPQILIRN--RRVGVPIGRTATLECEVEAFPLSVR  401 (902)
Q Consensus       340 -----~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----------~~P~i~~~p--~~~~v~~G~~v~L~C~a~g~P~P~v  401 (902)
                           ......++|.|.+++.+|+|.|+|.|.|           .+|.+...+  ..+.+.+|+++.|.|.+.|.|.|.|
T Consensus       279 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i  358 (527)
T 3qs9_E          279 TYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC  358 (527)
T ss_dssp             EEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEE
T ss_pred             eeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEE
Confidence                 1112234699999999999999999998           445554433  3466889999999999999999999


Q ss_pred             EEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       402 ~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|++++..+......  .   ...      .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|..
T Consensus       359 ~W~k~g~~l~~~~~~--~---~~~------~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i  418 (527)
T 3qs9_E          359 TWTFSRKSFPCEQKG--L---DNG------YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV  418 (527)
T ss_dssp             EEEETTEEEECBCCB--C---SSS------SEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEE
T ss_pred             EEEECCEECcCCccc--c---cCC------cEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeE
Confidence            999988776443221  1   112      24999999999999999999999999999999999866543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=177.02  Aligned_cols=167  Identities=12%  Similarity=0.177  Sum_probs=121.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCC---ceEEecCCCcccccC----------------Cccc------eeccCCcEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKP---SIIWKTSENKPITLG----------------SWKD------SAVASSTLN  349 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~~~~~~~~~----------------~~~~------~~~~~~sL~  349 (902)
                      +..+..++|.+|++|+|.|.+.+.|.+   .|+|+|++.......                ..+.      ....+.+|.
T Consensus         3 l~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   82 (218)
T 4frw_A            3 LETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVL   82 (218)
T ss_dssp             EECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEE
T ss_pred             EeCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEE
Confidence            345667899999999999999997765   489999765432110                0001      111235799


Q ss_pred             EEeeeeecCceeEEeecC----------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec
Q psy12803        350 FTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH  413 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~  413 (902)
                      |.+++.+|+|.|.|.+.+                .++..........+.+++.+.|.|.+.+.|.|.|.|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~  162 (218)
T 4frw_A           83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS  162 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             EeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccC
Confidence            999999999999999987                2222223334455678899999999999999999999988766432


Q ss_pred             CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        414 DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       414 ~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      ..  .    .........++|.|.++..+|+|.|+|+|.|..|..+..+.|.|.
T Consensus       163 ~~--~----~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          163 RS--F----KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EE--E----ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             ce--E----ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            21  1    122334456789999999999999999999999988766666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.79  E-value=2.9e-19  Score=198.63  Aligned_cols=170  Identities=16%  Similarity=0.163  Sum_probs=130.5

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecC-------
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADN-------  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N-------  367 (902)
                      ..+..+.+.+|++++|.|.+.+.|.+.+.|++++..+..... ......+++|.|.+++.+|+| .|+|.|.|       
T Consensus       163 ~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~  241 (347)
T 2ifg_A          163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV  241 (347)
T ss_dssp             EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE
T ss_pred             ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc-cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEE
Confidence            345667889999999999999999999999998876543322 223345568999999999999 99999988       


Q ss_pred             -------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC
Q psy12803        368 -------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       368 -------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                             .+|.+    ....+.+|+.++|.|.+.|.|.|.|.|++++..+...............+......+|.|.+++
T Consensus       242 ~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  317 (347)
T 2ifg_A          242 SVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT  317 (347)
T ss_dssp             EECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCC
T ss_pred             EEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCC
Confidence                   22332    2234568999999999999999999999887766533332222222111223346679999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        441 ISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      .+|+|.|+|+|.|.+|.+++++.|.|.++|
T Consensus       318 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          318 HVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             cccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            999999999999999999999999987653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.79  E-value=3e-19  Score=204.85  Aligned_cols=192  Identities=12%  Similarity=0.112  Sum_probs=132.8

Q ss_pred             ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCc---
Q psy12803        263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSW---  338 (902)
Q Consensus       263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~---  338 (902)
                      -.|.+.|..+........+.+..+|.+       .+.+..+.+|+++.|.|.+.+ .|.|.|+|+|++..+......   
T Consensus       206 Y~C~A~N~~G~~~~~~~~l~V~~~p~~-------~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~  278 (423)
T 3qs7_E          206 IRCCARNELGRECTRLFTIDLNQTPQT-------TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMS  278 (423)
T ss_dssp             EEEEEECSSCEEEEECEEEESSSCCCS-------STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEE
T ss_pred             EEEEEEcCCCCcceeeEEEEEecCCcc-------CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecc
Confidence            567777776654332223333333333       233578999999999999998 788999999988765332110   


Q ss_pred             ----cceeccCCcEEEEeeeeecCceeEEeecC-----------CCCEEEEcC--ceeeeecCceEEEEEEeeccCCceE
Q psy12803        339 ----KDSAVASSTLNFTRINRINMGAYMCLADN-----------VPPQILIRN--RRVGVPIGRTATLECEVEAFPLSVR  401 (902)
Q Consensus       339 ----~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----------~~P~i~~~p--~~~~v~~G~~v~L~C~a~g~P~P~v  401 (902)
                          .......++|.|.+++.+|+|.|+|.|.|           .+|.+...+  ..+.+.+|+++.|.|.+.|+|.|.|
T Consensus       279 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i  358 (423)
T 3qs7_E          279 TYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC  358 (423)
T ss_dssp             EEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEE
T ss_pred             cccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeE
Confidence                01122334799999999999999999999           456555544  3567889999999999999999999


Q ss_pred             EEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       402 ~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|++++..+......     .....      .+.+..+..+|+|.|+|.|.|..|.++.++.|.|...+..
T Consensus       359 ~W~k~g~~l~~~~~~-----~~~~~------~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~  418 (423)
T 3qs7_E          359 TWTFSRKSFPCEQKG-----LDNGY------SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH  418 (423)
T ss_dssp             EEEETTEEEECBCCB-----CSSSS------EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred             EEEECCEECCCcccc-----ccCCc------EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence            999988777543210     00000      1223566789999999999999999999999999887654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.79  E-value=2.2e-19  Score=182.95  Aligned_cols=168  Identities=23%  Similarity=0.359  Sum_probs=122.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC---ccceeccCC-----cEEEEeeeeecCceeEEeec
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS---WKDSAVASS-----TLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~---~~~~~~~~~-----sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+.....   .......++     .|.|.+++.+|+|.|+|.|.
T Consensus        13 ~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~   92 (212)
T 2v9r_A           13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVAR   92 (212)
T ss_dssp             EECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEE
T ss_pred             ecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEE
Confidence            3456678899999999999999999999999998765433221   112222333     34556679999999999998


Q ss_pred             C----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCcee
Q psy12803        367 N----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ  429 (902)
Q Consensus       367 N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~  429 (902)
                      |                .++.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+... ..++...   .    
T Consensus        93 n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~---~----  164 (212)
T 2v9r_A           93 NYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK-DERITIR---G----  164 (212)
T ss_dssp             ETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT-STTEEEE---T----
T ss_pred             CCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC-cceEEcc---C----
Confidence            7                12222233455678899999999999 89999999999987766432 2222221   1    


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCceeEE-EEEEEeecCCCC
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIAKG-SLILFESNAKTP  472 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~-s~~L~V~~~p~~  472 (902)
                        .+|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|..+|..
T Consensus       165 --~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          165 --GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF  206 (212)
T ss_dssp             --TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             --CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence              24999999999999999999999998765 489998876654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.79  E-value=5.8e-19  Score=206.61  Aligned_cols=173  Identities=20%  Similarity=0.307  Sum_probs=134.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcc--cccCCccc----eeccCCcEEEEeeeeecCceeEEeecC--
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKP--ITLGSWKD----SAVASSTLNFTRINRINMGAYMCLADN--  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~--~~~~~~~~----~~~~~~sL~I~~Vt~~DsG~YtC~A~N--  367 (902)
                      .+....+.+|++++|.|.+.+.|.+. ++|+|++..+  ........    .....++|.|.+++.+|+|.|+|.|.|  
T Consensus       217 ~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  296 (524)
T 2ec8_A          217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF  296 (524)
T ss_dssp             SCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSS
T ss_pred             cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecC
Confidence            45567899999999999999999887 9999988763  21111001    123356899999999999999999998  


Q ss_pred             ------------CCCEEEEcC---ceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeE
Q psy12803        368 ------------VPPQILIRN---RRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       368 ------------~~P~i~~~p---~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~  431 (902)
                                  .+|.+...+   ..+.+.+|++++|.|.+.+.|.|. +.|++++..+..... ++... ...+.+...
T Consensus       297 g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~-~~~~~-~~~~~~~~~  374 (524)
T 2ec8_A          297 GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE-DYPKS-ENESNIRYV  374 (524)
T ss_dssp             CEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC-CEESC-CSSSCCEEE
T ss_pred             CceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc-ceeEE-ccCCCceeE
Confidence                        456665543   367899999999999999999999 999998877654332 22222 222223456


Q ss_pred             eEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        432 MQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      ++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       375 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  414 (524)
T 2ec8_A          375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE  414 (524)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEE
T ss_pred             EEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCe
Confidence            7899999999999999999999999999999999976554

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=180.31  Aligned_cols=150  Identities=15%  Similarity=0.141  Sum_probs=108.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+.............++|.|.+++.+|+|.|+|.|.|         
T Consensus        11 ~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~   88 (196)
T 3p2t_A           11 EPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSD   88 (196)
T ss_dssp             ESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCC
T ss_pred             cCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCc
Confidence            3444 7899999999999999 7789999998776533211111123456899999999999999999987         


Q ss_pred             ----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 ----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 ----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                                .+|.+...+.. .+.+|++++|.|.+.+. .+.+.|++++..+.... .......     .....+|.|.
T Consensus        89 ~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~-~~~~~~~-----~~~~~~L~i~  160 (196)
T 3p2t_A           89 PLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLC-LRSEHGA-----QQHQAEFPMS  160 (196)
T ss_dssp             CEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGS-EEEEEEE-----EEEEEEEEEC
T ss_pred             cEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCccccee-ecccccc-----cCcceEEEeC
Confidence                      13444443332 57899999999999884 46899999887653322 1111100     1123569999


Q ss_pred             ccCCCCCeEEEEEEEeCCc
Q psy12803        438 NVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G  456 (902)
                      +|+.+|+|.|+|.|.|..+
T Consensus       161 ~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          161 PVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             SCCGGGCEEEEEEEECGGG
T ss_pred             CCcccCCCeEEEEEEcCCC
Confidence            9999999999999999876

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.79  E-value=1.4e-19  Score=184.10  Aligned_cols=162  Identities=19%  Similarity=0.212  Sum_probs=117.3

Q ss_pred             CcEEEEcCCeEEEEEecCCCC----CCceEEecCCCcc---------------cc----cCCccceec------cCCcEE
Q psy12803        299 SPIVVREGDNVRLRCVATGHP----KPSIIWKTSENKP---------------IT----LGSWKDSAV------ASSTLN  349 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~---------------~~----~~~~~~~~~------~~~sL~  349 (902)
                      ..+.+.+|++|+|.|.+.+.+    .+.|.|+|.+...               ..    ....+....      .+.+|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            457899999999999999877    5699999843211               10    001112221      356899


Q ss_pred             EEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecC
Q psy12803        350 FTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHD  414 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~  414 (902)
                      |.+++.+|+|.|+|.|.|              .+|.+........+.+|+.++|.|.+ .+.|.|.+.|++++.......
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~  167 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT  167 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCG
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCc
Confidence            999999999999999988              33333333333457889999999999 899999999998644322111


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      ...   .....      .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       168 ~~~---~~~~~------~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          168 PWL---AEMTS------PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             GGG---GGTTS------SEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             cce---eccCC------CEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            111   01111      24999999999999999999999999999999998743

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.79  E-value=1.3e-18  Score=194.84  Aligned_cols=159  Identities=19%  Similarity=0.269  Sum_probs=127.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee---ccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA---VASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~---~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      .+....+.+|+++.|.|.+.+.|.+.+.|+|++..+......+...   ....+|.|.+++.+|+|.|+|.|.|      
T Consensus       218 ~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  297 (395)
T 1bih_A          218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ  297 (395)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCce
Confidence            3566889999999999999999999999999876554322222211   1223799999999999999999999      


Q ss_pred             ---------CCCEEEEcCce-eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 ---------VPPQILIRNRR-VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 ---------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                               .+|.+...+.. ..+.+|++++|.|.+.|.|.|.+.|++++..+.. .  ++.+..   +      +|.|.
T Consensus       298 ~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~-~--~~~~~~---~------~L~i~  365 (395)
T 1bih_A          298 KHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-G--RATVTD---S------GLVIK  365 (395)
T ss_dssp             EEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-S--SEEEET---T------EEEES
T ss_pred             EEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCC-C--ceEEEC---C------EEEEe
Confidence                     45666666655 7789999999999999999999999998766532 2  333321   1      49999


Q ss_pred             ccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        438 NVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       366 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  395 (395)
T 1bih_A          366 GVKNGDKGYYGCRATNEHGDKYFETLVQVN  395 (395)
T ss_dssp             SCCSTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eCCcccCEEEEEEEEccCCCceEEEEEEEC
Confidence            999999999999999999999999999873

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.78  E-value=4.9e-19  Score=197.86  Aligned_cols=154  Identities=21%  Similarity=0.352  Sum_probs=128.9

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----------  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----------  367 (902)
                      +....+.+|++++|.|.+.+.|.+.+.|+|++..+..     ........|.|.+++.+|+|.|+|.|.|          
T Consensus       214 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  288 (382)
T 1cs6_A          214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR  288 (382)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc-----EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            4567899999999999999999999999998766422     2234567899999999999999999988          


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                          .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...  .++.+.   .      .+|.|.+++.+|
T Consensus       289 l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~---~------~~L~i~~v~~~d  357 (382)
T 1cs6_A          289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ--NRIEVS---G------GELRFSKLVLED  357 (382)
T ss_dssp             EEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC--SSEEEE---T------TEEEESSCCGGG
T ss_pred             EEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC--ceEEEE---C------CEEEECcCCccc
Confidence                4667777777788999999999999999999999999988766432  233322   1      249999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEee
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|+|.|.|..|...+++.|.|.
T Consensus       358 ~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          358 SGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCCeEEEEEEEEEe
Confidence            999999999999999999999886

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.78  E-value=1.7e-19  Score=195.44  Aligned_cols=164  Identities=21%  Similarity=0.316  Sum_probs=120.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC---CcEEEEeeee-ecCceeEEeecC---
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS---STLNFTRINR-INMGAYMCLADN---  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---~sL~I~~Vt~-~DsG~YtC~A~N---  367 (902)
                      +..+.++.+.+|++++|.|.+.|.|.+.|.|+|++..+.. .........+   .+|.|.+++. +|+|.|+|.|.|   
T Consensus        10 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g   88 (304)
T 2yd9_A           10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVG   88 (304)
T ss_dssp             EECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSC
T ss_pred             eecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCC
Confidence            3456778899999999999999999999999998766532 2212222122   4799999998 999999999998   


Q ss_pred             -----------CC-------CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC-ceEEEeecCCCce
Q psy12803        368 -----------VP-------PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG-VKYSISDVDKGSY  428 (902)
Q Consensus       368 -----------~~-------P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~~~s~  428 (902)
                                 .+       |.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+..... .++..  ...+  
T Consensus        89 ~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~--~~~~--  164 (304)
T 2yd9_A           89 EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSG--  164 (304)
T ss_dssp             EECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE--CTTS--
T ss_pred             eEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe--CCCe--
Confidence                       11       6777777778899999999999999999999999998766543221 12222  2222  


Q ss_pred             eeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE-EEEEee
Q psy12803        429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGS-LILFES  467 (902)
Q Consensus       429 ~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s-~~L~V~  467 (902)
                          +|.|.+++.+|+|.|+|.|.|..|..... +.|.|.
T Consensus       165 ----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~  200 (304)
T 2yd9_A          165 ----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR  200 (304)
T ss_dssp             ----CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ----EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEE
Confidence                39999999999999999999999987632 444443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.78  E-value=5.8e-19  Score=183.26  Aligned_cols=166  Identities=15%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCC---ceEEecCCCcccc----------cC-----Cccce------eccCCcEEEEeee
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKP---SIIWKTSENKPIT----------LG-----SWKDS------AVASSTLNFTRIN  354 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~~~~~~~----------~~-----~~~~~------~~~~~sL~I~~Vt  354 (902)
                      .++.+.+|++|+|.|.+.+.+.+   .|+|+|++.....          ..     ..+..      ...+.+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            45789999999999999876554   6999997653210          00     00111      1123479999999


Q ss_pred             eecCceeEEeecC------------CCCEEEEcCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEe
Q psy12803        355 RINMGAYMCLADN------------VPPQILIRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       355 ~~DsG~YtC~A~N------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      .+|+|.|+|.|.|            ..+.+........+.+|+.+.|.|.+.+ .|.|.|.|+++++.++......+  .
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~--~  169 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV--V  169 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC--E
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE--E
Confidence            9999999999998            1111112233456789999999999998 59999999987766544322222  2


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      ....+.+.   .+.+.+++.+|+|.|+|+|+|.+|..+.++.|.|.++
T Consensus       170 ~~~~g~~~---v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          170 ADGVGLYA---VAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             ECTTSCEE---EEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             ECCCCcEE---EEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            23333322   2445567789999999999999999999999988764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.78  E-value=4.4e-19  Score=199.20  Aligned_cols=166  Identities=27%  Similarity=0.386  Sum_probs=130.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC-CccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG-SWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~-~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+..+.+.+|+++.|.|.+.+.|.+.+.|+|++..+.... ..+.....+++|.|.+++.+|+|.|+|.|.|        
T Consensus       127 ~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  206 (403)
T 3laf_A          127 QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGN  206 (403)
T ss_dssp             CCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCC
T ss_pred             CCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceecc
Confidence            4566889999999999999999999999999887654322 2333445567999999999999999999988        


Q ss_pred             -------CCC------EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        368 -------VPP------QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       368 -------~~P------~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                             ..|      .+...+....+.+|++++|.|.+.+.|.+.+.|++++..+... ..++....  .      ++|
T Consensus       207 ~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~--~------~~L  277 (403)
T 3laf_A          207 EAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR-SKKYSLLG--G------SNL  277 (403)
T ss_dssp             CEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCS-SSSEEEET--T------TEE
T ss_pred             ceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCC-CceEEECC--c------cEE
Confidence                   111      2333455677889999999999999999999999877665432 22222221  1      249


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       278 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  314 (403)
T 3laf_A          278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPW  314 (403)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             EEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCc
Confidence            9999999999999999999999999999999887543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.78  E-value=4.4e-20  Score=187.39  Aligned_cols=170  Identities=19%  Similarity=0.318  Sum_probs=119.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccc---------cCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPIT---------LGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~---------~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..+.+.+|+++.|.|.+.+.|.+.+.|+|++..+..         ............+|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~   89 (209)
T 1nbq_A           10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE   89 (209)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred             CCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEec
Confidence            34567799999999999999999999999998766311         111112223347899999999999999999986


Q ss_pred             ----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceee
Q psy12803        368 ----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQY  430 (902)
Q Consensus       368 ----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~  430 (902)
                                      .+|.+........+.+|+.+.|.|.+ .+.|.|.+.|++++..+....................
T Consensus        90 ~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (209)
T 1nbq_A           90 EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT  169 (209)
T ss_dssp             TTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTT
T ss_pred             CCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCC
Confidence                            23333333334568899999999997 8999999999998876644322100000000000001


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCceeEE--EEEEEe
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIAKG--SLILFE  466 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~~~--s~~L~V  466 (902)
                      .++|.|.+++.+|+|.|+|.|.|..|....  .+.|.|
T Consensus       170 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          170 TGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             TCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            234999999999999999999999998844  444444

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.77  E-value=4.2e-19  Score=180.48  Aligned_cols=149  Identities=14%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      ..+.+|++|+|.|.+.+.|. .+.|+|++..+............++.|.|.+++.+|+|.|+|.|.|             
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   92 (196)
T 2d3v_A           14 SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLEL   92 (196)
T ss_dssp             SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEE
T ss_pred             CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEE
Confidence            37889999999999999776 9999998776532211111233456899999999999999999976             


Q ss_pred             ---C---CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 ---V---PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ---~---~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                         .   +|.+...+ ...+.+|++++|.|.+.+.| +.+.|++++..+...... ...  ...+  ....+|.|.+++.
T Consensus        93 ~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~-~~~--~~~~--~~~~~L~I~~v~~  165 (196)
T 2d3v_A           93 VVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD-SQL--TPSG--QFQALFPVGPVTP  165 (196)
T ss_dssp             EEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEE-CEE--CTTS--CEEEEEECCCCBT
T ss_pred             EecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccc-ccc--ccCC--CceeEEEeeecCc
Confidence               1   34444333 24688999999999999999 899999988765321110 001  1111  1235699999999


Q ss_pred             CCCeEEEEEEEeCCce
Q psy12803        442 SDFDTYRCISKNEVDI  457 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~  457 (902)
                      +|+|.|+|.|.|..+.
T Consensus       166 ~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          166 SHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             TBCEEEEEEEEETTEE
T ss_pred             ccCeeEEEEEEccCCC
Confidence            9999999999998753

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.77  E-value=1.3e-18  Score=173.51  Aligned_cols=147  Identities=14%  Similarity=0.130  Sum_probs=113.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+..+.+.+|++++|.|.+.+.|.+. +.|+|++..+.         ..+++|.|.+++.+|+|.|+|.+.|        
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~   83 (175)
T 1fnl_A           13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS---------SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQ   83 (175)
T ss_dssp             ESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE---------SSCSEEEESSCCGGGCEEEEEECSSSCCCCCEE
T ss_pred             cCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc---------CCceEEEEeCCCcccCEEEEEEeeCCcccccEE
Confidence            45556899999999999999988776 78999765432         2356899999999999999999998        


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                          .++.+.. .....+.+|+.++|.|.+.+.|+ +.+.|++++..+...         ...      ..|.|.+++.+
T Consensus        84 l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~---------~~~------~~L~i~~v~~~  147 (175)
T 1fnl_A           84 LEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------HHN------SDFHIPKATLK  147 (175)
T ss_dssp             EEEECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------EEC------CCEEESSCCGG
T ss_pred             EEEeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC---------CCC------CEEEEcccChh
Confidence                2223222 23356889999999999998765 599999987665221         011      23999999999


Q ss_pred             CCeEEEEEEEeCCce-eEEEEEEEeec
Q psy12803        443 DFDTYRCISKNEVDI-AKGSLILFESN  468 (902)
Q Consensus       443 DsG~YtC~A~N~~G~-~~~s~~L~V~~  468 (902)
                      |+|.|+|.|.|..+. .+..+.|.|.+
T Consensus       148 d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          148 DSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             hCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            999999999997664 45677777764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.77  E-value=1.4e-18  Score=173.43  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=113.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+..+.+.+|++++|.|.+.+.|.+ .+.|+|++..+.         ..+++|.|.+++.+|+|.|+|.+.|        
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~   80 (176)
T 1f2q_A           10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE---------ETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY   80 (176)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS---------CCSSEEEECSCCGGGCEEEEEECTTSSCCCCEE
T ss_pred             CCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC---------CCceEEEEeccceecCEEEEEEcCCccccccEE
Confidence            4555789999999999999998875 699999765432         2357899999999999999999998        


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                          .++.+. ......+.+|+++.|.|.+. +.|.+.+.|++++..+...         ..      ..+|.|.+++.+
T Consensus        81 l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~---------~~------~~~L~i~~v~~~  144 (176)
T 1f2q_A           81 LEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW---------YE------NHNISITNATVE  144 (176)
T ss_dssp             EEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC---------CC------SSEEEESSCCGG
T ss_pred             EEEeCcceee-cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee---------cC------CCeEEECCCCcc
Confidence                122222 22335678999999999995 6677899999977655211         11      124999999999


Q ss_pred             CCeEEEEEEEeCCce-eEEEEEEEeecCCC
Q psy12803        443 DFDTYRCISKNEVDI-AKGSLILFESNAKT  471 (902)
Q Consensus       443 DsG~YtC~A~N~~G~-~~~s~~L~V~~~p~  471 (902)
                      |+|.|+|.|.|..+. .+..+.|.|..+|.
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            999999999997544 45668888887654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=9.6e-19  Score=191.78  Aligned_cols=173  Identities=18%  Similarity=0.284  Sum_probs=126.3

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADN----------  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----------  367 (902)
                      .+.+.+|+++.|.|.+.+.|.+.+.|+|++..+.......  .......+|.|.+++.+|+|.|+|.|.|          
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  211 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT  211 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEE
Confidence            4678999999999999999999999999876654332211  1223456899999999999999999998          


Q ss_pred             ----C----CCEEEE-cCceeeeecCceEEEEEEeeccCCceEEEEe----cCCeeeecCCceEEEeecC--CCceeeEe
Q psy12803        368 ----V----PPQILI-RNRRVGVPIGRTATLECEVEAFPLSVRYWEF----IDGTLIEHDGVKYSISDVD--KGSYQYIM  432 (902)
Q Consensus       368 ----~----~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k----~~~~l~~~~~~~~~~~~~~--~~s~~~~s  432 (902)
                          .    +|.+.. .+....+.+|+++.|.|.+.+.|.|.+.|++    ++..+.......+.+....  .......+
T Consensus       212 l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
T 1ry7_B          212 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE  291 (334)
T ss_dssp             EEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCC
T ss_pred             EEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccccc
Confidence                1    222222 2355678899999999999999999999998    4444432222111111110  00000123


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.+++.+|+|.|+|.|.|..|....++.|.|...++.
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            5999999999999999999999999999999999876654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.77  E-value=3e-19  Score=201.13  Aligned_cols=193  Identities=20%  Similarity=0.313  Sum_probs=136.0

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCcccee
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSA  342 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~  342 (902)
                      .|.+.|..+.+.+....+.+.+.+.+.    ......+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ...+...
T Consensus        79 ~C~A~N~~G~~~s~~~~l~v~~~~~~~----~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-~~~~~~~  153 (384)
T 3kld_A           79 QCIATNSFGTIVSREAKLQFAYLENFK----TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-DNRRFVS  153 (384)
T ss_dssp             EEEEEETTEEEECCCEEEEEEEECCCS----CCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCC-SSSEEEC
T ss_pred             EEEEEcCcccEEecceEEEEecccccc----cCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEe-eccEEEE
Confidence            466666665544433333333333221    1123457899999999999865 467789999997755432 2223334


Q ss_pred             ccCCcEEEEeeeeecCceeEEeecCC--------C----------------CEEEE-cCceeeeecCceEEEEEEeeccC
Q psy12803        343 VASSTLNFTRINRINMGAYMCLADNV--------P----------------PQILI-RNRRVGVPIGRTATLECEVEAFP  397 (902)
Q Consensus       343 ~~~~sL~I~~Vt~~DsG~YtC~A~N~--------~----------------P~i~~-~p~~~~v~~G~~v~L~C~a~g~P  397 (902)
                      ..+++|.|.+++.+|+|.|+|.|.|.        .                |.+.. .+..+.+.+|+++.|.|.+.|.|
T Consensus       154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P  233 (384)
T 3kld_A          154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP  233 (384)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES
T ss_pred             cCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC
Confidence            45678999999999999999999881        1                11111 24456688999999999999999


Q ss_pred             CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        398 LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       398 ~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .|.+.|+++++..+... .+.  . ...      .+|.|.+++.+|+|.|+|.|.|..|....+..|.|..+|.
T Consensus       234 ~p~i~W~k~~~~~~~~~-~~~--~-~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~  297 (384)
T 3kld_A          234 VPTILWRRADGKPIARK-ARR--H-KSN------GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN  297 (384)
T ss_dssp             CCEEEEEETTCCCCCTT-CEE--C-TTS------CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             CCcEEEEeCCCcccccc-cee--c-CCC------cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCc
Confidence            99999998766543321 111  1 112      2499999999999999999999999999999998877554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.77  E-value=1.2e-18  Score=194.83  Aligned_cols=151  Identities=23%  Similarity=0.346  Sum_probs=123.5

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc---CCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL---GSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      ....+.+|++++|.|.+.++|.+.|+|+|++......   .........+++|.|.+++.+|+|.|+|.|.|        
T Consensus       220 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  299 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE  299 (388)
T ss_dssp             CCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEE
Confidence            4467899999999999999999999999975433211   11112233467999999999999999999999        


Q ss_pred             ------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 ------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                            .+|.+...+....+.+|+++.|.|.+.+.|.|.|.|++++..+...           .      ++|.|.+++.
T Consensus       300 ~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~-----------~------~~L~i~~v~~  362 (388)
T 2v5m_A          300 TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-----------E------SVLRIESVKK  362 (388)
T ss_dssp             EEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC-----------S------SEEEESSCCG
T ss_pred             EEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC-----------C------CEEEEecCCh
Confidence                  4566666677788999999999999999999999999987655321           1      2499999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +|+|.|+|.|.|..|..++++.|.|
T Consensus       363 ~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          363 EDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             hhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            9999999999999999999999876

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.77  E-value=1.2e-18  Score=178.53  Aligned_cols=168  Identities=16%  Similarity=0.286  Sum_probs=116.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc-cc----------ccC-Cccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK-PI----------TLG-SWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~-~~----------~~~-~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.|.|+|++.. ..          ... ..+....   ...+|.|.+++.+|+|.|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (213)
T 3d9a_L            7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (213)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEE
Confidence            35678899999999999999999899999985421 11          000 1122221   223899999999999999


Q ss_pred             EEeecC------------------CCCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeeecCCceEEEe
Q psy12803        362 MCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       362 tC~A~N------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      +|.|.|                  .+|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|++++..+...........
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  166 (213)
T 3d9a_L           87 FCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  166 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCC
T ss_pred             EEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCc
Confidence            999988                  1444444333223347899999999987 5665 8999998766532201112222


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      ...++.+...++|.|.+++.+|+|.|+|.|.|..........+
T Consensus       167 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          167 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             cCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            2344455567789999999999999999999987765444333

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.76  E-value=2.4e-18  Score=175.12  Aligned_cols=161  Identities=21%  Similarity=0.251  Sum_probs=117.0

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc-----------------CCccceeccCCcEEEEeeeeecCcee
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL-----------------GSWKDSAVASSTLNFTRINRINMGAY  361 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~-----------------~~~~~~~~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .++.+.+|++++|.|.+.+.+.+.+.|+|++......                 ...+.....+++|.|.+++.+|+|.|
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y   86 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY   86 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEE
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEE
Confidence            3467899999999999888899999999865422110                 11233344567899999999999999


Q ss_pred             EEeecC------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeec
Q psy12803        362 MCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDV  423 (902)
Q Consensus       362 tC~A~N------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~  423 (902)
                      +|.+.|                  ..|.+......  +.+|+++.|.|.+.+.| |.+.|++++..+...  .++.+...
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~--~~~~~~~~  161 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT--ERMTLSQN  161 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC--SSEEEETT
T ss_pred             EEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC--CCeEEcCC
Confidence            999988                  12444433333  78899999999999977 899999977665432  23333221


Q ss_pred             CCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEeecCCC
Q psy12803        424 DKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFESNAKT  471 (902)
Q Consensus       424 ~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~~p~  471 (902)
                       .      .+|.|.+++.+|+|.|+|.|.|.+|... ..+.|.|..++.
T Consensus       162 -~------~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          162 -N------SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             -T------TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             -C------CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence             1      2499999999999999999999999874 567777765543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.76  E-value=3e-18  Score=176.45  Aligned_cols=168  Identities=18%  Similarity=0.369  Sum_probs=118.4

Q ss_pred             cEEEEcCCeEEEEEecCCCCC-----CceEEecCCCcccc-----------cCCccceec------cCCcEEEEeeeeec
Q psy12803        300 PIVVREGDNVRLRCVATGHPK-----PSIIWKTSENKPIT-----------LGSWKDSAV------ASSTLNFTRINRIN  357 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~-----p~v~W~k~~~~~~~-----------~~~~~~~~~------~~~sL~I~~Vt~~D  357 (902)
                      .+.+.+|++++|.|.+.+.|.     +.|.|+|++.....           ....+....      .+.+|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            456889999999999998764     78999998754311           111122222      25689999999999


Q ss_pred             CceeEEeecC----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEE
Q psy12803        358 MGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSI  420 (902)
Q Consensus       358 sG~YtC~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~  420 (902)
                      +|.|+|.+.|                ..|.+...+ ...+.+|+.++|.|.+ .+.|.|.+.|+++++..... ......
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~-~~~~~~  161 (222)
T 4i0k_A           84 EGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTG-NVTTSQ  161 (222)
T ss_dssp             CSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCS-EEEEEE
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCC-CcceeE
Confidence            9999999986                235555444 3457789999999999 89999999998855554332 122222


Q ss_pred             eecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .....+.   .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       162 ~~~~~~~---~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  210 (222)
T 4i0k_A          162 MANERGL---FDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT  210 (222)
T ss_dssp             EECTTSC---EEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred             EcCCCCe---EEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence            2222222   345899999999999999999999999999999999876654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.76  E-value=2.1e-18  Score=175.38  Aligned_cols=159  Identities=15%  Similarity=0.138  Sum_probs=108.8

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV------------  368 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~------------  368 (902)
                      ..+.+|++|+|.|.+.+.|. .+.|+|++..+.............+.|.|.+++.+|+|.|+|.|.|.            
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~   92 (198)
T 1ugn_A           14 SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLE   92 (198)
T ss_dssp             SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEE
T ss_pred             CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEE
Confidence            47899999999999999775 79999987665322222222345678999999999999999999651            


Q ss_pred             --------CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC
Q psy12803        369 --------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       369 --------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                              +|.+...+ ...+.+|++++|.|.+.+. .+.+.|++++..+... ...+......    .....|.|.+++
T Consensus        93 l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~-~~~~~~~~~~----~~~~~L~i~~v~  165 (198)
T 1ugn_A           93 LVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQ-CLNSQPHARG----SSRAIFSVGPVS  165 (198)
T ss_dssp             EEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------C-EEEC----------CCEEEEEECCCC
T ss_pred             EEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCc-cccccccCCC----cceeEEEecccC
Confidence                    23333332 2568899999999999998 7899999988765321 1111111100    113469999999


Q ss_pred             CCCCeEEEEEEEeCCcee-----EEEEEEEee
Q psy12803        441 ISDFDTYRCISKNEVDIA-----KGSLILFES  467 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G~~-----~~s~~L~V~  467 (902)
                      .+|+|.|+|.|.|..+..     +..+.|.|.
T Consensus       166 ~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          166 PSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             TTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             cccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            999999999999986521     345555553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.76  E-value=3.5e-18  Score=183.14  Aligned_cols=170  Identities=17%  Similarity=0.274  Sum_probs=127.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC--CceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK--PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +..+..+.+.+|++++|.|.+.+ |.  +.+.|+++++..+.... +.....+..|.|.+++.+|+|.|+|.|.|     
T Consensus        93 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  170 (292)
T 4dkd_C           93 NVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHT-NYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKV  170 (292)
T ss_dssp             EESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSC-CEECCSSSCCEETTCCGGGCSEEEEEECSTTSCE
T ss_pred             cccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCC-cccccCCceEEECCCCHHHCeEEEEEEEeCCCce
Confidence            33456788999999999999998 54  78999997655543322 33344456799999999999999999997     


Q ss_pred             ----------C----CCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 ----------V----PPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 ----------~----~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                .    +|.+...+....+.+|+.+.|.|.+.+.|. +.+.|++++..+.......+.     ...+...+
T Consensus       171 ~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-----~~~~~~~~  245 (292)
T 4dkd_C          171 MSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH-----NNRYQKVL  245 (292)
T ss_dssp             ECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEE-----TTEEEEEE
T ss_pred             eEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceec-----cceeeeEE
Confidence                      2    777777777777789999999999998775 467887776655322221111     11123456


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.....
T Consensus       246 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  284 (292)
T 4dkd_C          246 TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG  284 (292)
T ss_dssp             EEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred             EEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence            799999999999999999999999999999999876543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.76  E-value=8.5e-18  Score=165.83  Aligned_cols=145  Identities=19%  Similarity=0.213  Sum_probs=111.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+..+.+.+|++++|.|.+.+.| .+.+.|+|++..+..         ....|.|.+++.+|+|.|+|.+.|        
T Consensus        10 ~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~---------~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~   80 (170)
T 3ry4_A           10 EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVH   80 (170)
T ss_dssp             ESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT---------CCSSEEEEECCGGGCEEEEEEETTSBCCCCEE
T ss_pred             CCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEccc---------CccceEEEecccccCeEEEEEEeCCCceEeEE
Confidence            45556789999999999999986 679999997654322         245688999999999999999998        


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                          .++.+.. .....+.+|+++.|.|.+. +.|.+.+.|++++..+....         ..      ..|.|.+++.+
T Consensus        81 l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---------~~------~~L~i~~v~~~  144 (170)
T 3ry4_A           81 LTVLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---------LD------PTFSIPQANHS  144 (170)
T ss_dssp             EEEECCSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES---------SC------CEEEESSCCGG
T ss_pred             EEEECCceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC---------CC------CeEEEEecccc
Confidence                3333333 3345678999999999995 55779999998776553211         11      24999999999


Q ss_pred             CCeEEEEEEEeCCce-eEEEEEEEe
Q psy12803        443 DFDTYRCISKNEVDI-AKGSLILFE  466 (902)
Q Consensus       443 DsG~YtC~A~N~~G~-~~~s~~L~V  466 (902)
                      |+|.|+|.|.|..|. .+..+.|.|
T Consensus       145 d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          145 HSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999999997 355566655

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.76  E-value=8.1e-19  Score=196.90  Aligned_cols=193  Identities=24%  Similarity=0.341  Sum_probs=137.5

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCcccee
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSA  342 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~  342 (902)
                      .|.+.|..+...+....+.+..+|.+..    ....+..+.+|++++|.|.+ .+.|.+.+.|++++...+... .+...
T Consensus        93 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~----~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~-~~~~~  167 (404)
T 3p3y_A           93 QCFARNKFGTALSNRIRLQVSKSPLWPK----ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD-KRVSQ  167 (404)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCCCCCC----CCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC-SSEEE
T ss_pred             EEEEEcCCCeEeeeeEEEEEeccCcccc----CCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC-CcEEE
Confidence            4555555444332233334444443321    12345789999999999999 788999999999876554332 34445


Q ss_pred             ccCCcEEEEeeeeec-CceeEEeecCC------------------------CCEEEEc---CceeeeecCceEEEEEEee
Q psy12803        343 VASSTLNFTRINRIN-MGAYMCLADNV------------------------PPQILIR---NRRVGVPIGRTATLECEVE  394 (902)
Q Consensus       343 ~~~~sL~I~~Vt~~D-sG~YtC~A~N~------------------------~P~i~~~---p~~~~v~~G~~v~L~C~a~  394 (902)
                      ..+++|.|.+++.+| +|.|+|.|.|.                        +|.+...   +....+.+|+++.|.|.+.
T Consensus       168 ~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~  247 (404)
T 3p3y_A          168 GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS  247 (404)
T ss_dssp             CTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC
T ss_pred             cCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC
Confidence            567799999999999 59999999870                        1111111   1235688999999999999


Q ss_pred             ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       395 g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +.|.+.+.|++++..+... ...+.   ...      ++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       248 g~p~~~v~W~~~~~~~~~~-~~~~~---~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  314 (404)
T 3p3y_A          248 GVPTPDIAWYKKGGDLPSD-KAKFE---NFN------KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY  314 (404)
T ss_dssp             CSSCCEEEEEETTBCCCTT-TEEEE---GGG------TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEECCEECCCC-ccccc---ccC------ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCe
Confidence            9999999999988766432 22211   111      2499999999999999999999999999999999987653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.76  E-value=8.9e-18  Score=172.71  Aligned_cols=170  Identities=15%  Similarity=0.263  Sum_probs=112.8

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCC-----CceEEecCCCccccc-------------CCccceec------cCCcEEEEee
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPK-----PSIIWKTSENKPITL-------------GSWKDSAV------ASSTLNFTRI  353 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~-----p~v~W~k~~~~~~~~-------------~~~~~~~~------~~~sL~I~~V  353 (902)
                      +..+.+.+|++++|.|.+.+.|.     +.|.|+|++..+...             ...+....      .+.+|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            34578999999999999987763     489999975221110             00111111      2248999999


Q ss_pred             eeecCceeEEeecCCC-----CEEEE--cC------ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEE
Q psy12803        354 NRINMGAYMCLADNVP-----PQILI--RN------RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSI  420 (902)
Q Consensus       354 t~~DsG~YtC~A~N~~-----P~i~~--~p------~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~  420 (902)
                      +.+|+|.|+|.|.|..     -.+.+  .+      ....+.+|+.++|.|.+.|.|.|.|.|+++++..+... .....
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~-~~~~~  166 (222)
T 3sbw_C           88 KLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGK-TTTTN  166 (222)
T ss_dssp             CGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCE-EEEEE
T ss_pred             ccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCc-cceEE
Confidence            9999999999999810     00111  11      11246789999999999999999999999855544321 22222


Q ss_pred             eecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .....+.+...+.|.|   +.+|+|.|+|.|.|..|....++.|.|...+.
T Consensus       167 ~~~~~~~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          167 SKREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             CC----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             EcCCCCCEEEEEEEEE---eccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            2333344334444444   57899999999999999999999999886554

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.76  E-value=1.3e-18  Score=182.25  Aligned_cols=169  Identities=20%  Similarity=0.221  Sum_probs=115.1

Q ss_pred             CCcEEEEcCCeEEEEEecCC---CCCCceEEecCCCccc----c------------------------cCCccceec--c
Q psy12803        298 SSPIVVREGDNVRLRCVATG---HPKPSIIWKTSENKPI----T------------------------LGSWKDSAV--A  344 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G---~P~p~v~W~k~~~~~~----~------------------------~~~~~~~~~--~  344 (902)
                      +.++.+.+|++|+|.|.+.+   .|.+.|.|+|++....    .                        ....+....  .
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            34688999999999999987   7889999999764320    0                        001111111  2


Q ss_pred             CCcEEEEeeeeecCceeEEeecCC----------------------CCEEEE-cCceeeeecCceEEEEEEeeccCCceE
Q psy12803        345 SSTLNFTRINRINMGAYMCLADNV----------------------PPQILI-RNRRVGVPIGRTATLECEVEAFPLSVR  401 (902)
Q Consensus       345 ~~sL~I~~Vt~~DsG~YtC~A~N~----------------------~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~v  401 (902)
                      +.+|.|.+++.+|+|.|+|.|.|.                      ++.+.. .+..+.+.+|+++.|.|.+.+.|.|.|
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            358999999999999999999881                      122222 123455667999999999999999999


Q ss_pred             EEEecCCeeeecCCceEEEe------------ecCCCcee--eEeEEEEeccCCCCCeEEEEEEEe---CCceeEEEEEE
Q psy12803        402 YWEFIDGTLIEHDGVKYSIS------------DVDKGSYQ--YIMQLNISNVNISDFDTYRCISKN---EVDIAKGSLIL  464 (902)
Q Consensus       402 ~W~k~~~~l~~~~~~~~~~~------------~~~~~s~~--~~stL~I~~V~~~DsG~YtC~A~N---~~G~~~~s~~L  464 (902)
                      .|++++..+...........            ........  ...+|.|.+++.+|+|.|+|.|.|   ..|....++.|
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            99998765533221111100            00000000  114699999999999999999999   55666777776


Q ss_pred             Ee
Q psy12803        465 FE  466 (902)
Q Consensus       465 ~V  466 (902)
                      .|
T Consensus       249 ~V  250 (250)
T 2fbo_J          249 KV  250 (250)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.76  E-value=2.9e-18  Score=188.69  Aligned_cols=161  Identities=21%  Similarity=0.222  Sum_probs=121.7

Q ss_pred             EEEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC------------
Q psy12803        302 VVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV------------  368 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~------------  368 (902)
                      .+.+|+++.|.|.+.+.| .+.+.|+|++..+.. ...+.. ..++.|.|.+++.+|+|.|+|.|.|.            
T Consensus       139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~-~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~  216 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELII-DGTKYS-QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR  216 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC-SSSSEE-EETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEE
T ss_pred             EEeCCCcEEEEeccCCCCCCceEEEEECCccCCC-CCceEe-cCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEe
Confidence            356799999999999999 999999998766532 222222 23689999999999999999999841            


Q ss_pred             --------CC---EEEEcCceeeeecCceEEEEEEeeccC---Cc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        369 --------PP---QILIRNRRVGVPIGRTATLECEVEAFP---LS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       369 --------~P---~i~~~p~~~~v~~G~~v~L~C~a~g~P---~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                              +|   ...+.+..+.+.+|++++|.|.+.+.|   .+ .+.|++++..+.......+.... .... ...++
T Consensus       217 ~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~-~~~~-~~~~~  294 (329)
T 3oq3_B          217 CKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILT-SSGG-ITEAT  294 (329)
T ss_dssp             EEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEE-EETT-EEEEE
T ss_pred             eEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeec-ccCc-eeEeE
Confidence                    11   011145557788999999999999998   77 88999988875433332222111 1111 24667


Q ss_pred             EEEeccCCCCCe-EEEEEEEeCCceeEEEEEEEe
Q psy12803        434 LNISNVNISDFD-TYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       434 L~I~~V~~~DsG-~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |.|.+++.+|+| .|+|.|.|..|....++.|.|
T Consensus       295 L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          295 LYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            999999999999 999999999999999988876

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.75  E-value=2.5e-18  Score=189.11  Aligned_cols=168  Identities=17%  Similarity=0.217  Sum_probs=126.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecC-------CCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803        295 IFSSSPIVVREGDNVRLRCVAT-------GHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~-------G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      ...+.++.+.+|++++|.|.+.       +.|.+.|.|+|++..+..... .......+++|.|.+++.+|+|.|+|.|.
T Consensus        22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~  101 (339)
T 3o4o_C           22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR  101 (339)
T ss_dssp             EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEE
T ss_pred             CcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEE
Confidence            3456778999999999999998       899999999998876422222 33344567799999999999999999999


Q ss_pred             CCC------CEEEE--c--------CceeeeecCceEEEEEE-----eeccCCceEEEEecCCeeeecCCceEEEeecCC
Q psy12803        367 NVP------PQILI--R--------NRRVGVPIGRTATLECE-----VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK  425 (902)
Q Consensus       367 N~~------P~i~~--~--------p~~~~v~~G~~v~L~C~-----a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~  425 (902)
                      |..      -.+.+  .        .....+.+|+++.|.|.     +.+.|.+.+.|++++..+.. ...++.... ..
T Consensus       102 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~-~~~~~~~~~-~~  179 (339)
T 3o4o_C          102 NASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK-DNEKFLSVR-GT  179 (339)
T ss_dssp             ETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT-TCSSEEECT-TS
T ss_pred             CCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC-CCceeEEcC-Cc
Confidence            811      11111  1        12346789999999999     78999999999998776643 323333322 11


Q ss_pred             CceeeEeEEEEeccCCCCCeEEEEEEEeCCc----eeEEEEEEEeecCC
Q psy12803        426 GSYQYIMQLNISNVNISDFDTYRCISKNEVD----IAKGSLILFESNAK  470 (902)
Q Consensus       426 ~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G----~~~~s~~L~V~~~p  470 (902)
                            .+|.|.+++.+|+|.|+|.|.|..|    .....+.|.|...+
T Consensus       180 ------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~  222 (339)
T 3o4o_C          180 ------THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK  222 (339)
T ss_dssp             ------SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC
T ss_pred             ------ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC
Confidence                  2499999999999999999999987    56778888887643

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.75  E-value=3.2e-18  Score=175.32  Aligned_cols=161  Identities=14%  Similarity=0.254  Sum_probs=112.4

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cc--cc--------cCCccceec---cCCcEEEEeeeeecCceeE
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KP--IT--------LGSWKDSAV---ASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~--~~--------~~~~~~~~~---~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      +.++.+.+|++|+|.|.+.+.|.+.|.|+|++.  .+  +.        ....+....   ...+|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            566889999999999999999889999998532  11  00        001111111   2238999999999999999


Q ss_pred             EeecCC------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEee
Q psy12803        363 CLADNV------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISD  422 (902)
Q Consensus       363 C~A~N~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~  422 (902)
                      |.|.|.                  +|.+...+....+.+|+.++|.|.+.+. |.+ .|.|++++..+............
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            999881                  3444432222223469999999999974 554 89999987665321011112223


Q ss_pred             cCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        423 VDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       423 ~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      ..++.+...++|.|.++..+|+|.|+|.|.|.....
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            345566677889999999999999999999987644

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.75  E-value=3.4e-18  Score=172.32  Aligned_cols=133  Identities=20%  Similarity=0.177  Sum_probs=103.3

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      ..+.+|++|+|.|.+.+ +.+.+.|+|++..         ....++.|.|.+++.+|+|.|+|.|.|             
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~---------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   86 (184)
T 2gi7_A           17 SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSS---------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLEL   86 (184)
T ss_dssp             SEEETTCCEEEEEECST-TCSEEEEEETTTC---------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred             ccccCCCcEEEEEeCCC-CCCEEEEEECCcc---------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEE
Confidence            37899999999999998 7889999997754         234567899999999999999999987             


Q ss_pred             ------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 ------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                            .+|.+...+ ...+.+|++++|.|.+.+.| +.+.|++++..+.....  .         .....+|.|.+++.
T Consensus        87 ~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~--~---------~~~~~~L~i~~v~~  153 (184)
T 2gi7_A           87 VATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP--E---------RWYRASFPIITVTA  153 (184)
T ss_dssp             EEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC--C---------EEEEESSSEEEETT
T ss_pred             EecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec--C---------CCceEEEEEccCCc
Confidence                  133444433 34577899999999987765 69999998866533111  0         11223499999999


Q ss_pred             CCCeEEEEEEEeCCc
Q psy12803        442 SDFDTYRCISKNEVD  456 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G  456 (902)
                      +|+|.|+|.|.|..+
T Consensus       154 ~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          154 AHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CCSEEEEEEEECTTS
T ss_pred             cCCeEEEEEEEeCCC
Confidence            999999999999754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.75  E-value=8.6e-18  Score=172.65  Aligned_cols=165  Identities=19%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      +.+.+|++++|.|.+.|.|.|.|.|++.....+.  ..........+|.|.+++.+|+|.|+|.|.|             
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V   88 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEE
Confidence            4456999999999999999999999984332211  1111112335799999999999999999998             


Q ss_pred             -CCC-EEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 -VPP-QILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 -~~P-~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                       .+| .+.+.+. ..+.+|+.++|.|.+.+. |.  ++|.|++++..+....   +.............++|.|..+..+
T Consensus        89 ~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~---~~~~~~~~~~~~~~~~l~i~~~~~d  164 (202)
T 1vca_A           89 YSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQE---FLEDADRKSLETKSLEVTFTPVIED  164 (202)
T ss_dssp             EBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEE---CCSCCSSCCCEEEEEEEEECCCGGG
T ss_pred             EeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccc---cccccCcCcceEEEEEEEEEeeecc
Confidence             122 1222222 458899999999999986 43  3799999886654321   0000001111334567889999999


Q ss_pred             CCeEEEEEEEeCCce-------eEEEEEEEeecCCC
Q psy12803        443 DFDTYRCISKNEVDI-------AKGSLILFESNAKT  471 (902)
Q Consensus       443 DsG~YtC~A~N~~G~-------~~~s~~L~V~~~p~  471 (902)
                      |.|.|+|.|.|.++.       .+.++.|.|..+|.
T Consensus       165 ~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          165 IGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             TTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             CCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            999999999999875       45678888876653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.75  E-value=5.4e-18  Score=183.23  Aligned_cols=158  Identities=15%  Similarity=0.162  Sum_probs=121.4

Q ss_pred             cEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccceecc-C--CcEEEEeeeeecCceeEEeecCC-------
Q psy12803        300 PIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVA-S--STLNFTRINRINMGAYMCLADNV-------  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~--~sL~I~~Vt~~DsG~YtC~A~N~-------  368 (902)
                      ...+.+|+++.|.|.+. +.|.+.+.|+|++..+............ .  .+|.|.+++.+|+|.|+|.|.|.       
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  195 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST  195 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEE
Confidence            67899999999999999 8999999999987665433222222111 1  24999999999999999988761       


Q ss_pred             --------------------------CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEe
Q psy12803        369 --------------------------PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       369 --------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                                                +|.|.... ...+.+|+.+.|.|.+.+.|.| .+.|++++..+.......+.  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--  272 (312)
T 2y23_A          196 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--  272 (312)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-----
T ss_pred             EEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--
Confidence                                      14444322 3678899999999999999988 99999988777543332221  


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                         .    ..++|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus       273 ---~----~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          273 ---D----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             --------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             ---C----CEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence               1    12469999999999999999999999999999998764

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.75  E-value=3.2e-18  Score=178.18  Aligned_cols=156  Identities=13%  Similarity=0.150  Sum_probs=111.4

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC--cEEEEeeeeecCceeEEeecC-----------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS--TLNFTRINRINMGAYMCLADN-----------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~--sL~I~~Vt~~DsG~YtC~A~N-----------  367 (902)
                      ..+.+|++|+|.|.+.+ +.+.+.|+|++..+..............  +|.|.+++.+|+|.|+|.|.|           
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~   96 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL   96 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCE
Confidence            46899999999999988 6789999998766432211101112344  899999999999999999987           


Q ss_pred             --------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        368 --------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       368 --------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                              .+|.+...+ ...+.+|++++|.|.+.+.|.+.+.|++++..+..  . . . ....      ...|.|.+|
T Consensus        97 ~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~--~-~-~-~~~~------~~~L~I~~v  164 (218)
T 1uct_A           97 ELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP--Q-H-Q-SGEH------PANFSLGPV  164 (218)
T ss_dssp             EEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC--S-E-E-ECSS------SEEEECCSC
T ss_pred             EEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc--c-c-c-CCCc------cCEEEEccC
Confidence                    134444444 35688999999999877888899999998865532  1 1 1 1111      235999999


Q ss_pred             CCCCCeEEEEEEEeCCc-----eeEEEEEEEeecC
Q psy12803        440 NISDFDTYRCISKNEVD-----IAKGSLILFESNA  469 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G-----~~~~s~~L~V~~~  469 (902)
                      +.+|+|.|+|.|.|...     ..+..+.|.|...
T Consensus       165 ~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          165 DLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             CGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            99999999999998642     2345567777654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.75  E-value=5.3e-18  Score=178.48  Aligned_cols=151  Identities=16%  Similarity=0.175  Sum_probs=120.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------  367 (902)
                      ..+..+.+.+|+++.|.|.+.+.|.+ .++|+|++..+..         .+.+|.|.+++.+|+|.|+|.|.|       
T Consensus         6 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~   76 (262)
T 3rjd_A            6 LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT---------STPSYRITSASVNDSGEYRCQRGLSGRSDPI   76 (262)
T ss_dssp             ESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEESSSCCCCCE
T ss_pred             cCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec---------cCCeEEEecCCcccCeEEEEEEecCCccccE
Confidence            34566789999999999999998888 9999997654321         256899999999999999999998       


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                          ..+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...         ...      ..|.|.+++.+
T Consensus        77 ~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~---------~~~------~~l~i~~~~~~  141 (262)
T 3rjd_A           77 QLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF---------HWN------SNLTILKTNIS  141 (262)
T ss_dssp             EEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------EEC------CCEEESSCCGG
T ss_pred             EEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc---------CCC------CeEEEEECChh
Confidence                11222333445668899999999999 77888999999877665321         011      23999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|+|.|.|..+..+..+.|.|....
T Consensus       142 d~G~Y~C~~~n~~~~~~~~~~l~V~~~~  169 (262)
T 3rjd_A          142 HNGTYHCSGMGKHRYTSAGISVTVKELF  169 (262)
T ss_dssp             GCEEEEEEEESSSEEEEECEEEEEECSS
T ss_pred             hCEEEEEEEeCCCCccccceEEEeccCC
Confidence            9999999999999988898999988653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.75  E-value=2.7e-18  Score=175.93  Aligned_cols=163  Identities=16%  Similarity=0.209  Sum_probs=113.7

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc--c--------CCccce---eccCCcEEEEeeeeecCceeEEe
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT--L--------GSWKDS---AVASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~--~--------~~~~~~---~~~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      .+.+.+|++|+|.|.+.+.|.+.|.|+|..  ..+..  .        ...+..   ...+.+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            578999999999999999999999999832  21110  0        011111   12334799999999999999999


Q ss_pred             ecCC---------------------CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEe
Q psy12803        365 ADNV---------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       365 A~N~---------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      |.|.                     +|.+...+....+.+|+.++|.|.+.+. |+ +.|.|++++..+.... ......
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~  167 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGV-KTTQPS  167 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE-EECCCE
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCc-ccCCcC
Confidence            9871                     2333333333333479999999999986 44 4999999876663211 110111


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      . ..+.+...++|.|.++..+|+|.|+|.|.|..+....++.+
T Consensus       168 ~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          168 K-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             E-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             c-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence            1 33445566789999999999999999999999877766543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=7.7e-19  Score=192.53  Aligned_cols=168  Identities=18%  Similarity=0.253  Sum_probs=69.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC-----
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV-----  368 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~-----  368 (902)
                      +..+.++.+.+|++++|.|.+.+. |.+.+.|+|++..+....   .....+++|.|.+++.+|+|.|+|.|.|.     
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~   88 (334)
T 1ry7_B           12 PGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE---RVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLC   88 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcc---cEEeccceEEEeecccccCEEEEEEEEeCCeEEE
Confidence            334667889999999999999986 678999999876653322   22235679999999999999999999871     


Q ss_pred             ------------------------------CCEEEEc----CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC
Q psy12803        369 ------------------------------PPQILIR----NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD  414 (902)
Q Consensus       369 ------------------------------~P~i~~~----p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~  414 (902)
                                                    +|.+...    ...+.+.+|+++.|.|.+.+.|.+.+.|++++..+....
T Consensus        89 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~  168 (334)
T 1ry7_B           89 HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH  168 (334)
T ss_dssp             ------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS
T ss_pred             EEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc
Confidence                                          1211111    123567899999999999999999999999877664322


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      ..........      ..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus       169 ~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  219 (334)
T 1ry7_B          169 RIGGIKLRHQ------QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP  219 (334)
T ss_dssp             STTCCCCCTT------TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             cccceecccc------eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC
Confidence            1110001111      13499999999999999999999999999999999987543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=181.10  Aligned_cols=163  Identities=15%  Similarity=0.170  Sum_probs=122.0

Q ss_pred             EEEEcCCeEEEEEecCC----------CCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecCC-
Q psy12803        301 IVVREGDNVRLRCVATG----------HPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADNV-  368 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G----------~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N~-  368 (902)
                      ..+.+|+.+.|.|.+.+          .|.+.+.|+|++..+............ ...|.|.+++.+|+|.|+|.|.|. 
T Consensus       108 ~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  187 (317)
T 2y25_A          108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK  187 (317)
T ss_dssp             HHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             eecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCC
Confidence            34556777777777766          789999999988765433221111111 135999999999999999999981 


Q ss_pred             ---------------------------------CCEEEE-cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC
Q psy12803        369 ---------------------------------PPQILI-RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD  414 (902)
Q Consensus       369 ---------------------------------~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~  414 (902)
                                                       .|.+.. .+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+....
T Consensus       188 g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~  267 (317)
T 2y25_A          188 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD  267 (317)
T ss_dssp             CEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCS
T ss_pred             ceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCC
Confidence                                             233333 3456788999999999999999999999999988775433


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                        ++.+.... +   ..++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       268 --~~~~~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          268 --HCNLKFEA-G---RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             --SEEECCBT-T---TEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             --cEEEEEcC-C---CEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence              33333221 1   1246999999999999999999999999999999998743

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.74  E-value=6.8e-18  Score=174.44  Aligned_cols=170  Identities=12%  Similarity=0.115  Sum_probs=122.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCccc----c-----cC--Cccce----------eccCCcEEEEeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPI----T-----LG--SWKDS----------AVASSTLNFTRIN  354 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~----~-----~~--~~~~~----------~~~~~sL~I~~Vt  354 (902)
                      .+.++.+.+|+++.|.|.+.+.|. +.+.|+|++....    .     ..  ..+..          ...++.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            456688999999999999999885 8999998665422    0     00  11122          3445679999999


Q ss_pred             eecCceeEEeecC------------------CCCEEEEcCceeeeecCceE-EEEEEe-eccCCceEEEEecCCeeeecC
Q psy12803        355 RINMGAYMCLADN------------------VPPQILIRNRRVGVPIGRTA-TLECEV-EAFPLSVRYWEFIDGTLIEHD  414 (902)
Q Consensus       355 ~~DsG~YtC~A~N------------------~~P~i~~~p~~~~v~~G~~v-~L~C~a-~g~P~P~v~W~k~~~~l~~~~  414 (902)
                      .+|+|.|+|.|.|                  ..|.+...+..+.+.+|+.+ .|.|.+ .+.|.|.+.|++++..+....
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence            9999999999987                  22455555555667789988 999999 899999999999887665433


Q ss_pred             --CceEEE----eecCCCceeeEeEEEEeccCCCCCeEEEEEEEe-----CCce-eEEEEEEEe
Q psy12803        415 --GVKYSI----SDVDKGSYQYIMQLNISNVNISDFDTYRCISKN-----EVDI-AKGSLILFE  466 (902)
Q Consensus       415 --~~~~~~----~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N-----~~G~-~~~s~~L~V  466 (902)
                        ..++.+    .....+.+...++|.|.....+|+|.|+|.|.|     ..|. .+..+.|.|
T Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence              012222    123445566667899986666679999999999     4555 445555544

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.74  E-value=3.1e-18  Score=191.35  Aligned_cols=191  Identities=18%  Similarity=0.251  Sum_probs=136.6

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCcc-ce
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWK-DS  341 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~-~~  341 (902)
                      .|.+.|..+...+....+.+.+.+.+.    ......+.+.+|++++|.|.+. +.|.+.+.|+|++..+......+ ..
T Consensus        78 ~C~a~n~~g~~~s~~~~l~v~~~~~~~----~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  153 (382)
T 1cs6_A           78 QCVATNARGTVVSREASLRFGFLQEFS----AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV  153 (382)
T ss_dssp             EEEEEETTEEEECCCEEEEEEEECCCC----SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE
T ss_pred             EEEEEcCCcEEEecceEEEeecccccc----ccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE
Confidence            455555444333333333444333332    1234568899999999999964 57889999999876643222222 23


Q ss_pred             eccCCcEEEEeeeeecCceeEEeecC-C------------------------CCEEEE-cCceeeeecCceEEEEEEeec
Q psy12803        342 AVASSTLNFTRINRINMGAYMCLADN-V------------------------PPQILI-RNRRVGVPIGRTATLECEVEA  395 (902)
Q Consensus       342 ~~~~~sL~I~~Vt~~DsG~YtC~A~N-~------------------------~P~i~~-~p~~~~v~~G~~v~L~C~a~g  395 (902)
                      ...+++|.|.+++.+|+|.|+|.|.| .                        +|.+.. .+....+.+|+.+.|.|.+.+
T Consensus       154 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g  233 (382)
T 1cs6_A          154 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFG  233 (382)
T ss_dssp             CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEE
T ss_pred             ecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEcc
Confidence            33457899999999999999999987 1                        233333 244677889999999999999


Q ss_pred             cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        396 FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       396 ~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .|.|.+.|++++..+..  .     ....      ..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       234 ~p~~~i~W~~~~~~~~~--~-----~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  296 (382)
T 1cs6_A          234 NPVPQIKWRKLDGSQTS--K-----WLSS------EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD  296 (382)
T ss_dssp             ESCCEEEEEECCSCCSC--C-----CSBS------SSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEECCccccc--E-----EecC------CcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCC
Confidence            99999999998876432  0     0111      23499999999999999999999999999999999887654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.74  E-value=2.4e-17  Score=192.85  Aligned_cols=173  Identities=15%  Similarity=0.203  Sum_probs=133.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N--------  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.|+|+|.++..+... .+.....++.|.|.+++.+|+| .|+|.|.|        
T Consensus       120 ~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~-~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~  198 (524)
T 2ec8_A          120 VDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKD-LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE  198 (524)
T ss_dssp             CCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSS-CEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCC
T ss_pred             cccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCC-CceeECCCccEEEeccchhhCCceEEEEEEECCceEEEE
Confidence            4556778999999999999997779999998555544322 2344455779999999999999 99999987        


Q ss_pred             -----------CCCEEEEcCceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 -----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                                 .+|.+...+....+.+|+++.|.|.+.+.|.|. +.|++++..+.........+  .........++|.
T Consensus       199 ~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~  276 (524)
T 2ec8_A          199 KFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH--HGDFNYERQATLT  276 (524)
T ss_dssp             CEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEE--CSSSCEEEEEEEE
T ss_pred             EEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccccccccc--ccCCccceEEEEE
Confidence                       346676777777899999999999999999887 99999887631111111111  1111233456799


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |.+++.+|+|.|+|.|.|..|....++.|.|..++..
T Consensus       277 I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  313 (524)
T 2ec8_A          277 ISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI  313 (524)
T ss_dssp             ESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEE
T ss_pred             ECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCce
Confidence            9999999999999999999999999999999876544

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.1e-17  Score=169.12  Aligned_cols=152  Identities=13%  Similarity=0.138  Sum_probs=108.1

Q ss_pred             EEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------------
Q psy12803        302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------------  367 (902)
                      .+.+|++|+|.|.+.+. .+.+.|+|++..+............+..|.|.+++.+|+|.|+|.+.|              
T Consensus        14 ~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~   92 (188)
T 1oll_A           14 MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   92 (188)
T ss_dssp             EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence            78999999999999874 478999998765432111111223456899999999999999999975              


Q ss_pred             -----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 -----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 -----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                           .+|.+...+ ...+.+|++++|.|.+.+. .+.+.|++++..+..    ... ...      ...+|.|.+|+.+
T Consensus        93 V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~----~~~-~~~------~~~~L~I~~v~~~  159 (188)
T 1oll_A           93 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRG-YGK------VQAEFPLGPVTTA  159 (188)
T ss_dssp             EESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE----EEE-ECS------SEEEEEEEECCGG
T ss_pred             ecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccc----ccc-CCC------ceeEEEECCCCcC
Confidence                 144554444 3458899999999998764 578999998876543    111 111      1345999999999


Q ss_pred             CCeEEEEEEEeCCc---eeEEEEEEEee
Q psy12803        443 DFDTYRCISKNEVD---IAKGSLILFES  467 (902)
Q Consensus       443 DsG~YtC~A~N~~G---~~~~s~~L~V~  467 (902)
                      |+|.|+|.|.|...   ..+..+.|.|.
T Consensus       160 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          160 HRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             GCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            99999999998641   12344555553

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.74  E-value=2.9e-17  Score=167.46  Aligned_cols=166  Identities=16%  Similarity=0.181  Sum_probs=115.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC---ceEEecCCCcccccCC------------------------ccceeccCCcEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP---SIIWKTSENKPITLGS------------------------WKDSAVASSTLN  349 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~~~~~~~~~~------------------------~~~~~~~~~sL~  349 (902)
                      .+.++.+.+|++|+|.|.+.+.+.+   .|+|+|++..+.....                        .......+.+|.
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence            3445788999999999999987765   3899998765432100                        001112345899


Q ss_pred             EEeeeeecCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeec
Q psy12803        350 FTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEH  413 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~  413 (902)
                      |.+++.+|+|.|+|.|.|               .+|.+...+.......++.+.+.|.+ .+.|.+.+.|++++..+...
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence            999999999999999987               33444443444445567777777765 56788899998887665432


Q ss_pred             CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        414 DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       414 ~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      .    ......++.+...++|.|.+++.+|+|.|+|+|.|..+....++.|.+
T Consensus       167 ~----~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          167 T----QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             E----EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             c----ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            1    112233445556778999999999999999999999887654444443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.73  E-value=5.1e-18  Score=170.48  Aligned_cols=149  Identities=15%  Similarity=0.047  Sum_probs=108.1

Q ss_pred             cEEEEcCCeEEEEEecCC--CCCCceEEecCCCccc--------ccCCccceeccCCcEEEEeeeeecCceeEEeecCC-
Q psy12803        300 PIVVREGDNVRLRCVATG--HPKPSIIWKTSENKPI--------TLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV-  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~~~--------~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~-  368 (902)
                      .+.+.+|++|+|.|....  .+.+.|.|+|++..+.        .....+.....+++|.|.+++.+|+|.|+|.|.|. 
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence            367899999999996544  6678999999874332        11223344456778999999999999999999981 


Q ss_pred             -CC------EEEE--cCc-eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEec
Q psy12803        369 -PP------QILI--RNR-RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       369 -~P------~i~~--~p~-~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                       ..      .+.+  .+. ......+..++|.|.+.+.|.|.|.|++++..+.....                  +.|.+
T Consensus        85 g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~------------------~~i~~  146 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ------------------KTMSY  146 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS------------------SEEEE
T ss_pred             CCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc------------------EEEEE
Confidence             11      1111  111 12223455799999999999999999998766543211                  44557


Q ss_pred             cCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      ++.+|+|.|+|.|.|.+|..++++.|.+
T Consensus       147 ~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          147 QWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             ECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEccCCeEEEEEEEecCCCceecccccC
Confidence            7899999999999999999988877755

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=193.67  Aligned_cols=169  Identities=16%  Similarity=0.168  Sum_probs=120.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC--ceEEecCCCcccccCCcc-ceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP--SIIWKTSENKPITLGSWK-DSAVAS------STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~~~~-~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+....+.+|++++|.|.+.+.|.+  .|+|+|++..+....... .....+      +.|.|.+++.+|+|.|+|.|.|
T Consensus       120 ~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  199 (523)
T 2rcj_C          120 FPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH  199 (523)
T ss_pred             cCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEe
Confidence            3444566789999999999997654  899999876653221110 011111      3699999999999999999998


Q ss_pred             ------------------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCc
Q psy12803        368 ------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGS  427 (902)
Q Consensus       368 ------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s  427 (902)
                                        .+|.+........+.+|+.+.|.|.+.+. |.| .|.|++++..+.......   .....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~---~~~~~g~  276 (523)
T 2rcj_C          200 EGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPA---VLQSSGL  276 (523)
T ss_pred             cCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCc---EecCCCc
Confidence                              13444433333456799999999999987 878 899999886642211111   1123344


Q ss_pred             eeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       428 ~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      +...++|.|.+++.+| |.|+|.|.|..|....++.|.|...
T Consensus       277 ~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~  317 (523)
T 2rcj_C          277 YSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL  317 (523)
T ss_pred             EEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence            5567789999999999 9999999999999877777766543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.73  E-value=1.1e-17  Score=171.41  Aligned_cols=164  Identities=15%  Similarity=0.174  Sum_probs=112.4

Q ss_pred             CCcEEEEcCCeEEEEEecCCCC---CCceEEecCCC--ccc--c--------cCCccceec---cCCcEEEEeeeeecCc
Q psy12803        298 SSPIVVREGDNVRLRCVATGHP---KPSIIWKTSEN--KPI--T--------LGSWKDSAV---ASSTLNFTRINRINMG  359 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P---~p~v~W~k~~~--~~~--~--------~~~~~~~~~---~~~sL~I~~Vt~~DsG  359 (902)
                      +..+.+.+|++|+|.|.+.+.|   .+.|.|+|++.  .+.  .        ....+....   ...+|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            5668899999999999999977   47899999642  210  0        001122111   2238999999999999


Q ss_pred             eeEEeecCC-------------------CCEEEEcCceeeeecCceEEEEEEeeccC-Cc-eEEEEecCCeeeecCCceE
Q psy12803        360 AYMCLADNV-------------------PPQILIRNRRVGVPIGRTATLECEVEAFP-LS-VRYWEFIDGTLIEHDGVKY  418 (902)
Q Consensus       360 ~YtC~A~N~-------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P-~v~W~k~~~~l~~~~~~~~  418 (902)
                      .|+|.|.|.                   +|.+...+....+.+|+.++|.|.+.+.+ .+ .|.|++++..+.. .....
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~-~~~~~  165 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA-GMETT  165 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT-TEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC-CeecC
Confidence            999999881                   22222222222233688999999999864 43 8999998766532 11111


Q ss_pred             EEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        419 SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       419 ~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      ......++.+...+.|.|..+..+|+|.|+|.|.|.....+.++
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          166 QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             CceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            11223445666778899999999999999999999887655544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.73  E-value=8.6e-19  Score=189.98  Aligned_cols=162  Identities=14%  Similarity=0.093  Sum_probs=118.5

Q ss_pred             CCcEEEEcCCeEEEEEecCCC-CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCCCCEEE---
Q psy12803        298 SSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVPPQIL---  373 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~P~i~---  373 (902)
                      +.++.+.+|++++|.|.+.+. |.+.+.|+|++..+..... ........+|.|.+++.+|+|.|+|.|.|......   
T Consensus        13 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~   91 (317)
T 2y25_A           13 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL   91 (317)
T ss_dssp             EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEE
T ss_pred             eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCc-EEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEE
Confidence            334789999999999999987 8899999998765432222 22223446899999999999999999998211111   


Q ss_pred             -----------EcCceeeeecCceEEEEEEeec----------cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        374 -----------IRNRRVGVPIGRTATLECEVEA----------FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       374 -----------~~p~~~~v~~G~~v~L~C~a~g----------~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                 ..+....+.+|+.+.|.|.+.+          .|.+.+.|++++..+....  ++.+.....     .+
T Consensus        92 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~-----~~  164 (317)
T 2y25_A           92 KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--RVKTGVTGE-----QI  164 (317)
T ss_dssp             CCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCS--SEEEEECSS-----EE
T ss_pred             EEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCC--CeEEeccCC-----EE
Confidence                       1112234557888888888877          7899999999988775433  233322221     34


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  199 (317)
T 2y25_A          165 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ  199 (317)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EEEECcCCcccCeeEEEEEEeCCceEEEEEEEeee
Confidence            69999999999999999999999999988888764

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.73  E-value=4e-18  Score=188.23  Aligned_cols=168  Identities=20%  Similarity=0.218  Sum_probs=96.8

Q ss_pred             CCcEEEEcCCeEEEEEec-----CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        298 SSPIVVREGDNVRLRCVA-----TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a-----~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +....+.+|+++.|.|.+     .+.|.+.++|+|++..+..  . .........|.|.+++.+|+|.|+|.|.|     
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~--~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~  203 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN--F-NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGR  203 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS--C-SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC--c-cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence            445678899999999985     7789999999997765421  1 22333446799999999999999999988     


Q ss_pred             -------------C------CCEEEEcCcee--eeecCceEEEEEEee----ccCCceEEEEecCCeeeec-CCceE--E
Q psy12803        368 -------------V------PPQILIRNRRV--GVPIGRTATLECEVE----AFPLSVRYWEFIDGTLIEH-DGVKY--S  419 (902)
Q Consensus       368 -------------~------~P~i~~~p~~~--~v~~G~~v~L~C~a~----g~P~P~v~W~k~~~~l~~~-~~~~~--~  419 (902)
                                   .      +|.+.......  .+.+|++++|.|.+.    +.|.|.+.|++++..+... ....+  .
T Consensus       204 ~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  283 (349)
T 4dep_C          204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES  283 (349)
T ss_dssp             EEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEE
T ss_pred             EEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccc
Confidence                         1      44444433322  678899999999999    5789999999988776441 11111  0


Q ss_pred             EeecCCCceeeEeEEEEeccCCCCC-eEEEEEEEeCCceeEEEEEEEeec
Q psy12803        420 ISDVDKGSYQYIMQLNISNVNISDF-DTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       420 ~~~~~~~s~~~~stL~I~~V~~~Ds-G~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      ............++|.|.+++.+|+ |.|+|.|.|..|....++.|.|..
T Consensus       284 ~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          284 ISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             EECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred             eeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            0011111123456699999999999 999999999999999999999865

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.73  E-value=9.8e-18  Score=177.78  Aligned_cols=173  Identities=18%  Similarity=0.301  Sum_probs=119.2

Q ss_pred             cCCcEEEEcCCeEEEEEecC---CCCCCceEEecCCCcccccC----------------Ccccee-----ccCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVAT---GHPKPSIIWKTSENKPITLG----------------SWKDSA-----VASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~---G~P~p~v~W~k~~~~~~~~~----------------~~~~~~-----~~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.   +.+.+.|.|+|.+.......                ..+...     ..+.+|.|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   90 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD   90 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence            34558899999999999998   77888999999654321110                011111     2336899999


Q ss_pred             eeeecCceeEEeecCC--------CCEEEE---cCceeeeecCceEEEEEEe---eccCCceEEEEecCCeeeecC----
Q psy12803        353 INRINMGAYMCLADNV--------PPQILI---RNRRVGVPIGRTATLECEV---EAFPLSVRYWEFIDGTLIEHD----  414 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~--------~P~i~~---~p~~~~v~~G~~v~L~C~a---~g~P~P~v~W~k~~~~l~~~~----  414 (902)
                      ++.+|+|.|+|.|.|.        ...+.+   .+....+.+|++++|.|.+   .+.|.+.+.|+++++......    
T Consensus        91 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~  170 (268)
T 3mj6_A           91 VQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLS  170 (268)
T ss_dssp             CCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEE
T ss_pred             CCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEE
Confidence            9999999999999871        111111   3456788999999999999   677999999998654321100    


Q ss_pred             ------------C----ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        415 ------------G----VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       415 ------------~----~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                                  .    .++.+...   ......+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~  241 (268)
T 3mj6_A          171 YDSNMRSGKFQSLGRFRNRVDLTGD---ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ  241 (268)
T ss_dssp             EETTSSSCEEECSSTTTTTEEECSC---GGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             ecCCCCccccccccccccceEeecc---CCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCe
Confidence                        0    01111000   0011345999999999999999999999999999999999655443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.72  E-value=7.7e-18  Score=188.31  Aligned_cols=194  Identities=15%  Similarity=0.244  Sum_probs=135.1

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCC---CceEEecCCCcccccC---C
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPK---PSIIWKTSENKPITLG---S  337 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~---p~v~W~k~~~~~~~~~---~  337 (902)
                      .|.+.|..+...+....+.+.++|.+.     ..+....+.+|++++|.|.+.+.+.   +.+.|+|++..+....   .
T Consensus        81 ~C~a~n~~g~~~s~~~~v~v~~~p~~~-----~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~  155 (388)
T 2v5m_A           81 ACLARNQFGSIISRDVHVRAVVAQYYE-----ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD  155 (388)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCCCC-----CBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBT
T ss_pred             EEEEEccCCeEEecceEEEEccccccc-----cCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCC
Confidence            455555554433333333344444432     2345678999999999999998653   7899999887654321   2


Q ss_pred             ccceeccCCcEEEEeeeeecC-ceeEEeecCCC----------CEEEE-c-------------CceeeeecCceEEEEEE
Q psy12803        338 WKDSAVASSTLNFTRINRINM-GAYMCLADNVP----------PQILI-R-------------NRRVGVPIGRTATLECE  392 (902)
Q Consensus       338 ~~~~~~~~~sL~I~~Vt~~Ds-G~YtC~A~N~~----------P~i~~-~-------------p~~~~v~~G~~v~L~C~  392 (902)
                      .+.....+++|.|.+++.+|+ |.|+|.|.|..          ..+.+ .             .....+.+|+.++|.|.
T Consensus       156 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~  235 (388)
T 2v5m_A          156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP  235 (388)
T ss_dssp             TTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCC
T ss_pred             CcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEE
Confidence            234445667999999999999 99999998710          01111 1             12356788999999999


Q ss_pred             eeccCCceEEEEecCCeeee----cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        393 VEAFPLSVRYWEFIDGTLIE----HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       393 a~g~P~P~v~W~k~~~~l~~----~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +.+.|.|.+.|++++..+..    ....++.         ...++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       236 ~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  306 (388)
T 2v5m_A          236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---------QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA  306 (388)
T ss_dssp             CEEESCCEEEEEEECTTSSCEEECCCSSSEE---------EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEecCCCCcccccccccCcee---------cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeC
Confidence            99999999999987543211    0111111         1123599999999999999999999999999999999987


Q ss_pred             CCC
Q psy12803        469 AKT  471 (902)
Q Consensus       469 ~p~  471 (902)
                      ++.
T Consensus       307 ~p~  309 (388)
T 2v5m_A          307 PLS  309 (388)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.72  E-value=1.2e-17  Score=184.52  Aligned_cols=161  Identities=14%  Similarity=0.123  Sum_probs=117.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCC-----------CceEEecCCCccc---ccC---CccceeccCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPK-----------PSIIWKTSENKPI---TLG---SWKDSAVASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~-----------p~v~W~k~~~~~~---~~~---~~~~~~~~~~sL~I~~Vt~~DsG~  360 (902)
                      ..++.+.+|+++.|.|.+.+.|.           +.|.|+|++....   ...   ........+++|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            45578999999999999998765           9999999874211   111   122333456799999999999999


Q ss_pred             eEEeecCCCC------EEEE------------cCceeeeecCceEEEEEEe-----eccCCceEEEEecCCeeeecCCce
Q psy12803        361 YMCLADNVPP------QILI------------RNRRVGVPIGRTATLECEV-----EAFPLSVRYWEFIDGTLIEHDGVK  417 (902)
Q Consensus       361 YtC~A~N~~P------~i~~------------~p~~~~v~~G~~v~L~C~a-----~g~P~P~v~W~k~~~~l~~~~~~~  417 (902)
                      |+|.|.|...      .+.+            .+....+.+|+.+.|.|.+     .+.|.+.+.|++++..+..  ..+
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~--~~~  171 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN--FNN  171 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS--CSS
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC--ccc
Confidence            9999999110      0111            1224567889999999985     7889999999998765522  222


Q ss_pred             EEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC-cee---EEEEEEEeecC
Q psy12803        418 YSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV-DIA---KGSLILFESNA  469 (902)
Q Consensus       418 ~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~-G~~---~~s~~L~V~~~  469 (902)
                      +...  .       +.|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|...
T Consensus       172 ~~~~--~-------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~  218 (349)
T 4dep_C          172 VIPE--G-------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS  218 (349)
T ss_dssp             EEEE--T-------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             eeec--C-------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence            2211  1       249999999999999999999987 554   67777777654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.72  E-value=1.6e-17  Score=172.53  Aligned_cols=168  Identities=16%  Similarity=0.261  Sum_probs=116.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcc----cc--------cCCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP----IT--------LGSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~----~~--------~~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.+.|+|.+...    +.        ....+....   .+.+|.|.+++.+|+|.|
T Consensus        30 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  109 (237)
T 3sob_L           30 SPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY  109 (237)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEE
Confidence            466789999999999999999999999999843110    00        001111111   334799999999999999


Q ss_pred             EEeecC------------------CCCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEe
Q psy12803        362 MCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       362 tC~A~N------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      +|.+.|                  .+|.+...+....+.+|+.++|.|.+.+. | .+.|.|++++..+...........
T Consensus       110 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~  189 (237)
T 3sob_L          110 YCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ  189 (237)
T ss_dssp             EEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCC
T ss_pred             EEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeeccccc
Confidence            999987                  23333333333334468899999999984 5 589999988766532110122223


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      ...++.+...++|.|..+..+|+|.|+|.|.|.......+..+
T Consensus       190 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          190 DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             ccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence            3455667778889999999999999999999987655444333

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.72  E-value=1e-17  Score=182.46  Aligned_cols=162  Identities=18%  Similarity=0.216  Sum_probs=120.5

Q ss_pred             CCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccce----eccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        298 SSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDS----AVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~----~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      .....+.+++.+.|.|.+. +.|.+.+.|++++..+.........    ....+.|.|..+..+|+|.|+|.|.|     
T Consensus       124 ~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  203 (313)
T 4fqp_A          124 VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK  203 (313)
T ss_dssp             ECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSS
T ss_pred             ccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCc
Confidence            3445567889999999876 6899999999987765432211100    01123588889999999999999998     


Q ss_pred             -----------CCCEEEEcC-ceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        368 -----------VPPQILIRN-RRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       368 -----------~~P~i~~~p-~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                                 .+|.+.+.+ ....+.+|+.++|.|.+.|+|.| .|.|++++..+..  ..  . ..  .      .+|
T Consensus       204 ~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~--~~--~-~~--~------~~L  270 (313)
T 4fqp_A          204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP--FA--V-AQ--G------AQL  270 (313)
T ss_dssp             CEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCT--TE--E-EE--T------TEE
T ss_pred             cceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCC--ce--E-Ee--C------CEE
Confidence                       345554433 33456678999999999999999 6999998877632  11  1 11  1      249


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|.+++.+|+|.|+|.|.|.+|..+.++.|.|.+.|+.
T Consensus       271 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          271 LIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             EECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC--
T ss_pred             EECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCC
Confidence            99999999999999999999999999999999887654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.72  E-value=5.2e-17  Score=174.13  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=114.9

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      +.+.+|+++.|.|.+. .|.+.++|++.+......    ........+.    ..+|+|.|+|.|.|             
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~----~~~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~  175 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP----VPYDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVY  175 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC----CCEETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEE
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc----eeecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEE
Confidence            6789999999999999 688899998865221111    0111111121    46799999999986             


Q ss_pred             ----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        368 ----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                          .+|.+...+....+.+|++++|.|.+.+.|.|.+.|++++.............  .........++|.|.+++.+|
T Consensus       176 v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D  253 (289)
T 3mjg_X          176 RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF--LLDMPYHIRSILHIPSAELED  253 (289)
T ss_dssp             ECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEE--SCTTTTEEEEEEEESSCCSSC
T ss_pred             ecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccc--cCCcceEEEEEEEEcccChhh
Confidence                14555555556778999999999999999999999997665432111111111  111122345679999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|+|.|.|.+|..++++.|.|...+..
T Consensus       254 ~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          254 SGTYTCNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred             CcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence            99999999999999999999999876543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.72  E-value=6.9e-18  Score=185.68  Aligned_cols=158  Identities=19%  Similarity=0.255  Sum_probs=118.6

Q ss_pred             CcEEEEcCCeEEEEEecCCC---------CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecCC
Q psy12803        299 SPIVVREGDNVRLRCVATGH---------PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADNV  368 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~---------P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N~  368 (902)
                      .++.+.+|+++.|.|.+.+.         |.+.|+|+|++..+.....  .  ..+++|.|.+++.+|+| .|+|.|.|.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~--~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~  112 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR--R--VKNGDLWIANYTSNDSHRRYLCTVTTK  112 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECST--T--EETTEEEESSCCGGGGGCCEEEEEECT
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCc--e--eecceEEEcCCChHhCCCcEEEEEEeC
Confidence            45779999999999999884         6689999998876543221  1  44779999999999999 999999991


Q ss_pred             ---------------CCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        369 ---------------PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       369 ---------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                     +|.+........+.+|+++.|.|.+.+.| .|.+.|++++..+.. ...++...   .      .
T Consensus       113 ~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~-~~~~~~~~---~------~  182 (329)
T 3oq3_B          113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII-DGTKYSQS---G------Q  182 (329)
T ss_dssp             TSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC-SSSSEEEE---T------T
T ss_pred             CCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCC-CCceEecC---C------C
Confidence                           22222222233456799999999999999 999999998877632 33333332   1      2


Q ss_pred             EEEEeccCCCCCeEEEEEEEeC--CceeE----EEEEEEeecCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNE--VDIAK----GSLILFESNAK  470 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~--~G~~~----~s~~L~V~~~p  470 (902)
                      +|.|.+++.+|+|.|+|.|.|.  .|...    ..+.|.|...+
T Consensus       183 ~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            4999999999999999999997  65443    34778887655

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.72  E-value=2e-17  Score=169.36  Aligned_cols=163  Identities=18%  Similarity=0.263  Sum_probs=114.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--ccc--------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--ITL--------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.+.|+|.+..  .  +..        ...+....   .+.+|.|.+++.+|+|.|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (213)
T 3r06_A            7 SPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSY   86 (213)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEE
Confidence            35668899999999999999999999999984311  1  000        01111111   234899999999999999


Q ss_pred             EEeecC------------------CCCEEEEcCceeeeecCceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEe
Q psy12803        362 MCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       362 tC~A~N------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      +|.|.|                  .+|.+...+....+..|+.++|.|.+.+.|+  +.+.|++++..+...........
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  166 (213)
T 3r06_A           87 YCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQ  166 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCC
T ss_pred             EEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCce
Confidence            999987                  2334444333334456888999999998754  48999998766532110222223


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      ...++.+...++|.|..+..+|+|.|+|.|.|......
T Consensus       167 ~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~  204 (213)
T 3r06_A          167 DSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA  204 (213)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred             eCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence            34556677788899999999999999999999875443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.72  E-value=2e-17  Score=174.64  Aligned_cols=163  Identities=15%  Similarity=0.265  Sum_probs=113.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC-----CCceEEecCC-Cccc----------cc-CCccceec---cCCcEEEEeeee
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP-----KPSIIWKTSE-NKPI----------TL-GSWKDSAV---ASSTLNFTRINR  355 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P-----~p~v~W~k~~-~~~~----------~~-~~~~~~~~---~~~sL~I~~Vt~  355 (902)
                      ..+..+.+.+|++|+|.|.+.+.|     .+.|.|+|++ +...          .. ...+....   ...+|.|.+++.
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  122 (254)
T 2c1o_A           43 QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEA  122 (254)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCc
Confidence            346778999999999999999987     4899999853 2211          00 01122221   223799999999


Q ss_pred             ecCceeEEeecCC------------------CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCC
Q psy12803        356 INMGAYMCLADNV------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDG  415 (902)
Q Consensus       356 ~DsG~YtC~A~N~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~  415 (902)
                      +|+|.|+|.|.|.                  +|.+...+....+.+|+.++|.|.+.+. |. +.|.|++++..+.....
T Consensus       123 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  202 (254)
T 2c1o_A          123 EDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  202 (254)
T ss_dssp             GGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEE
T ss_pred             ccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcce
Confidence            9999999999881                  3444433222223458899999999985 44 46999998877643201


Q ss_pred             ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        416 VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       416 ~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      .........++.+...++|.|.++..+|+|.|+|.|.|.....
T Consensus       203 ~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          203 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            1222222344555667889999999999999999999987654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.72  E-value=9.2e-18  Score=183.25  Aligned_cols=157  Identities=17%  Similarity=0.221  Sum_probs=112.9

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      ..+.+|++|+|.|.+.+. .+.+.|+|++..+...   .......+.|.|.+++.+|+|.|+|.|.|             
T Consensus        33 ~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~  108 (316)
T 3vh8_G           33 AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI---FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNP  108 (316)
T ss_dssp             SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH---HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCC
T ss_pred             CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee---ecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCc
Confidence            468899999999999997 6899999988764321   11223467899999999999999999864             


Q ss_pred             ---------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEec
Q psy12803        368 ---------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       368 ---------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                               .+|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+....... ... .    ......|.|.+
T Consensus       109 ~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~-~~~-~----~~~~~~L~i~~  180 (316)
T 3vh8_G          109 VVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVG-QIH-D----GVSKANFSIGP  180 (316)
T ss_dssp             EEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEEC-EEE-T----TEEEEEEEECS
T ss_pred             EEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeee-eec-C----CCceEEEEECC
Confidence                     134454444433 78999999999995 4567899998876653211100 000 0    01235699999


Q ss_pred             cCCCCCeEEEEEEEeCCcee-----EEEEEEEeecC
Q psy12803        439 VNISDFDTYRCISKNEVDIA-----KGSLILFESNA  469 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~-----~~s~~L~V~~~  469 (902)
                      ++.+|+|.|+|.|.|..|..     +..+.|.|...
T Consensus       181 v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~  216 (316)
T 3vh8_G          181 MMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP  216 (316)
T ss_dssp             CCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS
T ss_pred             CChhhCceEEEEEecCCCCccccCCCCCEEEEecCC
Confidence            99999999999999998742     45566777653

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.72  E-value=2.2e-18  Score=186.87  Aligned_cols=164  Identities=14%  Similarity=0.240  Sum_probs=120.7

Q ss_pred             cCCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCc--cceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        297 SSSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSW--KDSAVASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~--~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      .+..+.+.+|+.+.|.|.+ .+.|.+.|+|+|++..+......  .......+.|.|.++..+|+|.|+|.|.|      
T Consensus       120 ~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  199 (308)
T 4fom_A          120 GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKD  199 (308)
T ss_dssp             CSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             ccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCc
Confidence            4445556678999999985 57999999999988765432210  01111224699999999999999999998      


Q ss_pred             ----------CCCEEEEcC-ceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        368 ----------VPPQILIRN-RRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 ----------~~P~i~~~p-~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                                .+|.+...+ ....+.+|+.++|.|.+.|.|.| .+.|++++..+....      . ....     ..|.
T Consensus       200 ~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~------~-~~~~-----~~l~  267 (308)
T 4fom_A          200 IRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL------L-ASDN-----TLHF  267 (308)
T ss_dssp             EEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC------B-CSTT-----EEEC
T ss_pred             eEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE------E-EcCC-----eEEE
Confidence                      234443332 23456678999999999999998 699999887763311      0 1111     2377


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |.+++.+|+|.|+|.|.|.+|..+.++.|.|.++|..
T Consensus       268 i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          268 VHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHH  304 (308)
T ss_dssp             CSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC--
T ss_pred             ECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCCC
Confidence            8999999999999999999999999999999987753

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.72  E-value=6.1e-18  Score=189.35  Aligned_cols=168  Identities=20%  Similarity=0.253  Sum_probs=125.3

Q ss_pred             CcEEEEcCCeEEEEEec-CCCCCCceEEecCCC--cccccC---CccceeccCCcEEEEeeeeecCc---eeEEeecCC-
Q psy12803        299 SPIVVREGDNVRLRCVA-TGHPKPSIIWKTSEN--KPITLG---SWKDSAVASSTLNFTRINRINMG---AYMCLADNV-  368 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~--~~~~~~---~~~~~~~~~~sL~I~~Vt~~DsG---~YtC~A~N~-  368 (902)
                      .+..+.+|++++|.|.+ .+.|.+.+.|+|++.  ......   ..+.....+++|.|.+++.+|+|   .|+|.|.|. 
T Consensus       108 ~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~  187 (395)
T 1bih_A          108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA  187 (395)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecc
Confidence            35667899999999996 788999999999762  211111   22334456779999999999999   999999980 


Q ss_pred             -C--C---------------------EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecC
Q psy12803        369 -P--P---------------------QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD  424 (902)
Q Consensus       369 -~--P---------------------~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~  424 (902)
                       .  .                     .....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......++......
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~  267 (395)
T 1bih_A          188 VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT  267 (395)
T ss_dssp             CSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSS
T ss_pred             cceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecC
Confidence             0  0                     001123456788999999999999999999999998876654433443322221


Q ss_pred             CCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEE-EEEEEeecCCC
Q psy12803        425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG-SLILFESNAKT  471 (902)
Q Consensus       425 ~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~-s~~L~V~~~p~  471 (902)
                      .+     ++|.|.+++.+|+|.|+|.|.|..|.... ++.|.|..+|.
T Consensus       268 ~~-----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~  310 (395)
T 1bih_A          268 SG-----KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK  310 (395)
T ss_dssp             TT-----SEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEE
T ss_pred             CC-----ceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCc
Confidence            11     25999999999999999999999998765 88998886554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.71  E-value=6.7e-17  Score=193.89  Aligned_cols=155  Identities=18%  Similarity=0.248  Sum_probs=123.2

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      .+.......+.+|++++|.|.+.+ |.+.+.|+|++..+..... ......+++|.|.+++.+|+|.|+|.|.|      
T Consensus       470 ~i~~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  547 (642)
T 1e07_A          470 SISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPR-LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANR  547 (642)
T ss_pred             eEecCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCc-EEEcCCCcEEEEeecChhcCceEEEEeEcCCCCcc
Confidence            344445577889999999999995 8899999998766543222 22223456999999999999999999998      


Q ss_pred             ----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 ----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 ----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                                .++.+...+.+..+.+|+.++|.|.+.+.|.|.+.|++++..+..            .      .+|.|.
T Consensus       548 s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~------------~------~~L~i~  609 (642)
T 1e07_A          548 SDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH------------T------QVLFIA  609 (642)
T ss_pred             CCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc------------C------ceEEEC
Confidence                      123344455667889999999999999999999999988755421            1      139999


Q ss_pred             ccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        438 NVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +++.+|+|.|+|.|.|.+|.+..++.|.|..
T Consensus       610 ~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          610 KITPNNNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             cccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence            9999999999999999999998888888763

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.71  E-value=3.4e-18  Score=188.05  Aligned_cols=166  Identities=16%  Similarity=0.256  Sum_probs=124.5

Q ss_pred             cEEEEcCCeEEEEEe-----cCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803        300 PIVVREGDNVRLRCV-----ATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~-----a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------  367 (902)
                      ...+.+|+++.|.|.     +.+.|.+.+.|+|++..+.............+.|.|.+++.+|+|.|+|.|.|       
T Consensus       129 ~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  208 (339)
T 3o4o_C          129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQY  208 (339)
T ss_dssp             EEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCC
T ss_pred             ceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEE
Confidence            357899999999999     78899999999997766543322222222335899999999999999999987       


Q ss_pred             ----------------CCCEEEEcCceeeeecCceEEEEEEe---eccC-CceEEEEecCCeeeec-------CCceEEE
Q psy12803        368 ----------------VPPQILIRNRRVGVPIGRTATLECEV---EAFP-LSVRYWEFIDGTLIEH-------DGVKYSI  420 (902)
Q Consensus       368 ----------------~~P~i~~~p~~~~v~~G~~v~L~C~a---~g~P-~P~v~W~k~~~~l~~~-------~~~~~~~  420 (902)
                                      .+|.+...+..+.+.+|+++.|.|.+   .+.| .+.+.|++++..+...       ...++..
T Consensus       209 ~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~  288 (339)
T 3o4o_C          209 NITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY  288 (339)
T ss_dssp             EEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC
T ss_pred             EEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEe
Confidence                            14555555566678899999999999   8999 8899999887654221       1112222


Q ss_pred             eecCCCceeeEeEEEEeccCCCCC-eEEEEEEEeCCceeEEEEEEEee
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDF-DTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~Ds-G~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                        ...+.....++|.|.+++.+|+ |.|+|.|.|.+|.+++.++|.+.
T Consensus       289 --~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          289 --SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             --CCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             --cccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence              2223233455699999999998 99999999999999888877664

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.71  E-value=3.5e-17  Score=168.35  Aligned_cols=165  Identities=15%  Similarity=0.225  Sum_probs=109.7

Q ss_pred             CCcEEEEcCCeEEEEEec-CCCC-CCceEEecCCC--ccc--c--------cCCccceec---cCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVA-TGHP-KPSIIWKTSEN--KPI--T--------LGSWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a-~G~P-~p~v~W~k~~~--~~~--~--------~~~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|.+ .+.+ .+.|.|+|++.  .+.  .        ....+....   ...+|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            455789999999999995 4443 67999999542  110  0        001122211   22379999999999999


Q ss_pred             eEEeecCCC-------------------CEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeeecCCceEE
Q psy12803        361 YMCLADNVP-------------------PQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIEHDGVKYS  419 (902)
Q Consensus       361 YtC~A~N~~-------------------P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~~~~~~~~  419 (902)
                      |+|.|.|..                   |.+...+....+.+|+.++|.|.+.+ .|.+ .|.|++++..+.........
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            999998822                   22222111111235889999999998 4555 89999987665321011112


Q ss_pred             EeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        420 ISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       420 ~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      .....++.+...++|.|..+..+|+|.|+|.|.|.........
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  209 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK  209 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEE
Confidence            2233455667778999999999999999999999876544333

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.71  E-value=2.6e-17  Score=169.00  Aligned_cols=161  Identities=16%  Similarity=0.266  Sum_probs=108.0

Q ss_pred             cEEEEcCCeEEEEEecCCC-CCCceEEecCCC--cc--cc-cCC-----------ccce---eccCCcEEEEeeeeecCc
Q psy12803        300 PIVVREGDNVRLRCVATGH-PKPSIIWKTSEN--KP--IT-LGS-----------WKDS---AVASSTLNFTRINRINMG  359 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~--~~--~~-~~~-----------~~~~---~~~~~sL~I~~Vt~~DsG  359 (902)
                      .+.+.+|++|+|.|.+.+. |.+.|.|+|...  ..  +. ...           .+..   ...+.+|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            6789999999999999998 899999998421  10  00 000           1111   112346999999999999


Q ss_pred             eeEEeecCC-----------------------CCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeeecC
Q psy12803        360 AYMCLADNV-----------------------PPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIEHD  414 (902)
Q Consensus       360 ~YtC~A~N~-----------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~~~  414 (902)
                      .|+|.|.|.                       +|.+...+....+..|+.++|.|.+.+ .|.+ .|.|++++..+....
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  168 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV  168 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCce
Confidence            999999651                       222322222223346789999999998 5777 899999876664321


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      ... ... ...+.+...+.|.|..+..+|+|.|+|.|.|..+..+.++
T Consensus       169 ~~~-~~~-~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          169 DTS-NPT-KEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             ------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ecC-ccc-ccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            111 111 1144555667799999999999999999999998776654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.70  E-value=4.5e-17  Score=181.32  Aligned_cols=158  Identities=12%  Similarity=0.119  Sum_probs=118.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC------CCEE--
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV------PPQI--  372 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~------~P~i--  372 (902)
                      ..+.+|++++|.|.+.+.|.+.+.|+|++..+         .....+|.|.+++.+|+|.|+|.|.|.      ...+  
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v  176 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  176 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCE---------EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECE
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc---------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEE
Confidence            35789999999999999999999999987543         234578999999999999999999981      1111  


Q ss_pred             EEc---CceeeeecCceEEEEEEeec-----cCCceEEEEecCCeeeec------CCceEEEeecCCC-----ceeeEeE
Q psy12803        373 LIR---NRRVGVPIGRTATLECEVEA-----FPLSVRYWEFIDGTLIEH------DGVKYSISDVDKG-----SYQYIMQ  433 (902)
Q Consensus       373 ~~~---p~~~~v~~G~~v~L~C~a~g-----~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~-----s~~~~st  433 (902)
                      ...   +..+.+.+|+.+.|.|.+.+     .|.|.+.|++++..+...      ...++.+......     ......+
T Consensus       177 ~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (363)
T 1wio_A          177 LAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH  256 (363)
T ss_dssp             ECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCE
T ss_pred             ecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceE
Confidence            111   14566888999999998877     889999999887665431      1222222110000     0000235


Q ss_pred             EEEeccCCCCCeEEEEEEEeC--CceeEEEEEEEee
Q psy12803        434 LNISNVNISDFDTYRCISKNE--VDIAKGSLILFES  467 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~--~G~~~~s~~L~V~  467 (902)
                      |.|.+++.+|+|.|+|.|.|.  .|..+..+.|.|.
T Consensus       257 L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             EEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             EEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            999999999999999999999  9999999999887

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.70  E-value=6.1e-17  Score=170.19  Aligned_cols=169  Identities=14%  Similarity=0.146  Sum_probs=112.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCc-----eEEecCCCccccc---------------CCcc----ceeccCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPS-----IIWKTSENKPITL---------------GSWK----DSAVASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~-----v~W~k~~~~~~~~---------------~~~~----~~~~~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.     |.|+|++......               ....    .....+.+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34557899999999999999887776     9999964332100               0000    0112344699999


Q ss_pred             eeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeee----
Q psy12803        353 INRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIE----  412 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~----  412 (902)
                      ++.+|+|.|+|.+.|              .+|.+...+.. .+..|..+.|.|.+.+ .|.| .|.|++++..+..    
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~  167 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEI  167 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcccc
Confidence            999999999999987              45555554432 3456788889999998 7998 9999998864321    


Q ss_pred             -cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce--eEEEEEEEe
Q psy12803        413 -HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI--AKGSLILFE  466 (902)
Q Consensus       413 -~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~--~~~s~~L~V  466 (902)
                       ............++.+...++|.|..+..+|.|.|+|.|.|..+.  .+.++.|.|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          168 SEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence             111111233345566777788999999999999999999999886  456666666

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.70  E-value=7.6e-18  Score=193.19  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=107.4

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCc-cceeccCCcEEEEeeeeecCceeEEeecCCC-------CEE
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW-KDSAVASSTLNFTRINRINMGAYMCLADNVP-------PQI  372 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~-~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~-------P~i  372 (902)
                      ..+.+|+.+.|.|.+.|+|.|.|+|+|++......... ....... ...   ++.+|+|.|+|.|.|..       -.+
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~-~~~---l~~~d~G~Y~C~A~N~~G~~~~~~~~l  224 (423)
T 3qs7_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKE-EKV---LHELFGTDIRCCARNELGRECTRLFTI  224 (423)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEEC-CSE---ECCCCSSCEEEEEECSSCEEEEECEEE
T ss_pred             cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccccccccc-ceE---EecccCeEEEEEEEcCCCCcceeeEEE
Confidence            34567899999999999999999999977643211000 0000111 111   15789999999999911       011


Q ss_pred             E------EcCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        373 L------IRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       373 ~------~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      .      ..+....+.+|+++.|.|.+.+ .|.|.|.|++++..+........... .........++|.|.+++.+|+|
T Consensus       225 ~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G  303 (423)
T 3qs7_E          225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY-STNRTMIRILFAFVSSVARNDTG  303 (423)
T ss_dssp             ESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEE-ETTTEEEEEEEEEESSCCTTTCE
T ss_pred             EEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccc-cCCceeEEEEEEEEeecCHHHCE
Confidence            1      1234567899999999999999 67799999999887643211111111 11112233456999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .|+|.|.|.   .+.++.|.|..++.
T Consensus       304 ~Y~C~A~N~---~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          304 YYTCSSSKH---PSQSALVTIVEKGF  326 (423)
T ss_dssp             EEEEEETTE---EEEEEEEEEESSCE
T ss_pred             EEEEEEecC---CCceEEEEEEeCCc
Confidence            999999998   77788888876654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.70  E-value=7e-18  Score=183.31  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=116.7

Q ss_pred             cEEEEcCCeEEEEEecCCCC-CCceEEecCCCcccc-cCCccceeccCCcEEEEeeeeecCceeEEeecC--------CC
Q psy12803        300 PIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPIT-LGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------VP  369 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~-~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------~~  369 (902)
                      .+.+.+|+++.|.|.+.+.| .+.|.|+|++..... ..........+++|.|.+++.+|+|.|+|.|.|        ..
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS   93 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEE
Confidence            46799999999999999977 889999998764321 122223334466999999999999999999998        11


Q ss_pred             CEEEE-cC---------ceeeeecCceEEEEEEe------eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        370 PQILI-RN---------RRVGVPIGRTATLECEV------EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       370 P~i~~-~p---------~~~~v~~G~~v~L~C~a------~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                      ..+.. .+         ....+.+|+++.|.|.+      .+.|.+.+.|++++..+... ..++...   .      .+
T Consensus        94 v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~-~~~~~~~---~------~~  163 (315)
T 1itb_B           94 AKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFSGV---K------DR  163 (315)
T ss_dssp             CEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC-SSSEEEE---T------TE
T ss_pred             EEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc-cceEeec---C------ce
Confidence            11111 11         12567889999999998      89999999999988766432 2232221   1      24


Q ss_pred             EEEeccCCCCCeEEEEEEE-eCCcee---EEEEEEEee
Q psy12803        434 LNISNVNISDFDTYRCISK-NEVDIA---KGSLILFES  467 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~-N~~G~~---~~s~~L~V~  467 (902)
                      |.|.+++.+|+|.|+|.|. |..|..   ...+.|.+.
T Consensus       164 L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             EEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEe
Confidence            9999999999999999999 888877   455555554

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.70  E-value=2.4e-17  Score=168.67  Aligned_cols=161  Identities=14%  Similarity=0.213  Sum_probs=113.2

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc-c---------CCccce---eccCCcEEEEeeeeecCceeEEe
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT-L---------GSWKDS---AVASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~-~---------~~~~~~---~~~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      .+.+.+|++|+|.|.+.  |.+.+.|+|.+  ..+.. .         ...+..   ...+.+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            57899999999999999  88999999942  22110 0         001111   12234799999999999999999


Q ss_pred             ecC--------------------CCCEEEEcCceeeeecCceEEEEEEeecc--CCceEEEEecCCeeeecCCceEEEee
Q psy12803        365 ADN--------------------VPPQILIRNRRVGVPIGRTATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSISD  422 (902)
Q Consensus       365 A~N--------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~~l~~~~~~~~~~~~  422 (902)
                      |.|                    .+|.+...+....+.+|+.++|.|.+.+.  |.+.+.|++++..+.. .........
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~-~~~~~~~~~  165 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA-GVETTTPSK  165 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT-TEEECCCEE
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC-CcccCCceE
Confidence            977                    13344433333334469999999999986  3578999988766532 111111122


Q ss_pred             cCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        423 VDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       423 ~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      ...+.+...++|.|.++..+|+|.|+|.|.|..+..+.++.
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          166 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             CTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            34456667788999999999999999999999987776654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.70  E-value=5.8e-17  Score=199.96  Aligned_cols=164  Identities=23%  Similarity=0.346  Sum_probs=132.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+....+.+|++++|.|.+.+.|.+.++|+|++..+.         ..+..|.|.+++.+|+|.|+|.|.|         
T Consensus       349 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  419 (816)
T 3dmk_A          349 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG---------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASA  419 (816)
T ss_dssp             ESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECS---------CCSSEEEESSCCGGGCEEEEEEEECSSCEEEECC
T ss_pred             CCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECC---------CCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEE
Confidence            4566788999999999999999999999999765432         1246899999999999999999998         


Q ss_pred             --------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        368 --------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       368 --------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                              .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+..............++  ...++|.|.++
T Consensus       420 ~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~--~~~~~L~i~~v  497 (816)
T 3dmk_A          420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG--DVVSYLNITSV  497 (816)
T ss_dssp             EEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTS--CEEEEEEESSC
T ss_pred             EEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCC--CcEEEEEEeec
Confidence                    36677776777788999999999999999999999999877664333222211111111  23467999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        440 NISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +.+|+|.|+|.|.|..|....++.|.|..++.
T Consensus       498 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  529 (816)
T 3dmk_A          498 HANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY  529 (816)
T ss_dssp             CTTTCEEEEEEEEETTEEEEEEEEEEECSSCE
T ss_pred             cccCCEEEEEEEEECCCeEEEEEEEEEecCCe
Confidence            99999999999999999999999999987654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.70  E-value=6.8e-17  Score=177.07  Aligned_cols=159  Identities=14%  Similarity=0.197  Sum_probs=113.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCCccc---ccCC----cccee--------ccCCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPI---TLGS----WKDSA--------VASSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~---~~~~----~~~~~--------~~~~sL~I~~Vt~~DsG~  360 (902)
                      .+.++.+.+|++++|.|.+.+. |.+.|.|+|++....   ....    .+...        ....+|.|.+++.+|+|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   88 (327)
T 2wng_A            9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGT   88 (327)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEE
T ss_pred             CCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeE
Confidence            4566889999999999999997 889999999875421   0000    01111        334589999999999999


Q ss_pred             eEEeecCC-CC----------EEEE--c-------CceeeeecCceEEEEEEeeccCCc--eEEEEecCCeeeecCCceE
Q psy12803        361 YMCLADNV-PP----------QILI--R-------NRRVGVPIGRTATLECEVEAFPLS--VRYWEFIDGTLIEHDGVKY  418 (902)
Q Consensus       361 YtC~A~N~-~P----------~i~~--~-------p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~~  418 (902)
                      |+|.|.|. ..          .+.+  .       .....+.+|+.+.|.|.+.+.|++  .+.|++++..+...  ...
T Consensus        89 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~--~~~  166 (327)
T 2wng_A           89 YYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF--QTN  166 (327)
T ss_dssp             EEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE--EEE
T ss_pred             EEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc--ccc
Confidence            99999871 10          1111  1       112457889999999999998876  89999987665322  112


Q ss_pred             EEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        419 SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       419 ~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .......+.+...++|.|.....+|.|.|+|.|.|..+.
T Consensus       167 ~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          167 VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            222234455666778999988888889999999999876

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.70  E-value=1.1e-18  Score=213.31  Aligned_cols=163  Identities=21%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce----------------e--c---cCCcEEEEeeeeecCc
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS----------------A--V---ASSTLNFTRINRINMG  359 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~----------------~--~---~~~sL~I~~Vt~~DsG  359 (902)
                      ..+.+|+++.|.|.+.+.|.+.+.|+|++..+.........                .  .   ...+|.|.+++.+|+|
T Consensus       559 ~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  638 (772)
T 3v2a_R          559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG  638 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCc
Confidence            45789999999999999999999999987665432211100                0  0   1125999999999999


Q ss_pred             eeEEeecC------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEe
Q psy12803        360 AYMCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       360 ~YtC~A~N------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      .|+|.|.|                  .+|.|...+.++.+.+|++++|.|.+.|.|.|.|.|++++..+.....  +.+.
T Consensus       639 ~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~--~~~~  716 (772)
T 3v2a_R          639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLK  716 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCC--eEEc
Confidence            99999998                  356666666677889999999999999999999999998877754332  2221


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      . .      .++|.|.+++.+|+|.|+|.|.|.+|.++.++.|.|..+|..
T Consensus       717 ~-~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          717 D-G------NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK  760 (772)
T ss_dssp             ---------------------------------------------------
T ss_pred             C-C------CcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCc
Confidence            1 1      235999999999999999999999999999999999887654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.70  E-value=1.5e-16  Score=188.44  Aligned_cols=168  Identities=16%  Similarity=0.253  Sum_probs=122.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCce----EEec--CCC--cccccC-------Cccceec---cCC--cEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSI----IWKT--SEN--KPITLG-------SWKDSAV---ASS--TLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v----~W~k--~~~--~~~~~~-------~~~~~~~---~~~--sL~I~~Vt~~  356 (902)
                      .+..+.+.+|+++.|.|.+.+.|.+.+    +|+|  ++.  .+....       ..+....   .++  +|.|.+++.+
T Consensus       337 ~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~  416 (585)
T 2ocw_A          337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR  416 (585)
T ss_pred             CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChh
Confidence            346678999999999999999999987    7999  665  332211       1122221   233  3999999999


Q ss_pred             cCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEee----ccCCceEEEEecCCeeeecCCce
Q psy12803        357 NMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVE----AFPLSVRYWEFIDGTLIEHDGVK  417 (902)
Q Consensus       357 DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~----g~P~P~v~W~k~~~~l~~~~~~~  417 (902)
                      |+|.|+|.| |               .+|.+. .+..+.+.+|+++.|.|.+.    +.|.|.|.|++++..+.......
T Consensus       417 D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~  494 (585)
T 2ocw_A          417 DAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEG  494 (585)
T ss_pred             hCEEEEEcc-cCCCccceeEEEEEecCccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCC
Confidence            999999999 6               123333 25667899999999999997    77889999999988775432211


Q ss_pred             ----EEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEeecCC
Q psy12803        418 ----YSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFESNAK  470 (902)
Q Consensus       418 ----~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~~p  470 (902)
                          +... ...   ...++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..++
T Consensus       495 ~~~~~~~~-~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          495 PSKAFVNC-DEN---SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCcceEEe-cCc---ccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence                1111 111   1235699999999999999999999999765 44889998765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.70  E-value=4.7e-17  Score=167.77  Aligned_cols=165  Identities=15%  Similarity=0.223  Sum_probs=111.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccccc---------------CCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPITL---------------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~~~---------------~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.|  .+.|.|+|++  ..+...               ...+....     .+.+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            345668899999999999999865  6889999974  222100               01122221     23589999


Q ss_pred             eeeeecCceeEEeecCCC----------------------CEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecC
Q psy12803        352 RINRINMGAYMCLADNVP----------------------PQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFID  407 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~~----------------------P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~  407 (902)
                      +++.+|+|.|+|.|.|..                      |.+...+....+.+|+.++|.|.+.+ .|.| .|.|++++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            999999999999997721                      22222222223567999999999998 8999 99999887


Q ss_pred             CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      ..+.........   . .+.+...++|.|.. ...|.|.|+|.|.|..+.......|.
T Consensus       165 ~~~~~~~~~~~~---~-~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          165 LSSGVHTFPAVL---Q-SDLYTLSSSVTVPS-SPRPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             BCTTEEECCCEE---S-SSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             cccceEecCCcc---c-CCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCccEEEecC
Confidence            653111111111   1 14455667899954 44466999999999998776665553

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.70  E-value=7e-17  Score=193.72  Aligned_cols=184  Identities=23%  Similarity=0.295  Sum_probs=132.8

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV  343 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~  343 (902)
                      .|.+.|..+...+....+.+..+|...    ...+....+.+|++++|.|.+.+.|.+.++|+|++..+.          
T Consensus       358 ~C~a~n~~g~~~s~~~~l~V~~~p~~~----~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~----------  423 (642)
T 1e07_A          358 ECGIQNELSVDHSDPVILNVLYGPDDP----TISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ----------  423 (642)
T ss_pred             EEEEeCCCCCcceeeEEEEEEcCCCCC----eecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC----------
Confidence            466666555433333344444444321    223456788999999999999999999999999765432          


Q ss_pred             cCCcEEEEeeeeecCceeEEeecC-------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEE
Q psy12803        344 ASSTLNFTRINRINMGAYMCLADN-------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE  404 (902)
Q Consensus       344 ~~~sL~I~~Vt~~DsG~YtC~A~N-------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~  404 (902)
                      ....|.|.+++.+|+|.|+|.|.|                   .+|.+.. .....+.+|++++|.|.+.+ |.+.+.|+
T Consensus       424 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~  501 (642)
T 1e07_A          424 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWW  501 (642)
T ss_pred             CCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEE
Confidence            245799999999999999999998                   0222222 23456779999999999994 88999999


Q ss_pred             ecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEeecCCCC
Q psy12803        405 FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFESNAKTP  472 (902)
Q Consensus       405 k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~~p~~  472 (902)
                      +++..+...  .++.+... .      .+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|...|..
T Consensus       502 ~~g~~l~~~--~~~~~~~~-~------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~  561 (642)
T 1e07_A          502 VNGQSLPVS--PRLQLSNG-N------RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT  561 (642)
T ss_pred             ECCEeCCCC--CcEEEcCC-C------cEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCc
Confidence            988776432  23333221 1      2499999999999999999999999864 4688888866543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=3e-18  Score=175.65  Aligned_cols=158  Identities=20%  Similarity=0.269  Sum_probs=109.6

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCC-cccc-----------cCCccceec---cCCcEEEEeeeeecCceeE
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN-KPIT-----------LGSWKDSAV---ASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~-~~~~-----------~~~~~~~~~---~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      +..+.+.+|++|+|.|.+.+.|.+.|.|+|++. ..+.           ....+....   ...+|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            566889999999999999998888999998542 1110           001111111   2238999999999999999


Q ss_pred             EeecC---------------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEE
Q psy12803        363 CLADN---------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYS  419 (902)
Q Consensus       363 C~A~N---------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~  419 (902)
                      |.|.|                     .+|.+...+....+.+|+.++|.|.+.+. |. +.|.|++++..+... .....
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~-~~~~~  164 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG-VKTTK  164 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS-CBCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC-eecCC
Confidence            99983                     12333322222234579999999999987 55 799999987666432 11111


Q ss_pred             EeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        420 ISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       420 ~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .....++ +...++|.|.+++.+|+|.|+|.|.|..+.
T Consensus       165 ~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            1122233 555678999999999999999999998765

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.69  E-value=1.3e-17  Score=171.69  Aligned_cols=144  Identities=21%  Similarity=0.303  Sum_probs=103.6

Q ss_pred             EEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC---CCEEEEc----
Q psy12803        303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV---PPQILIR----  375 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~---~P~i~~~----  375 (902)
                      +.+|++|+|.|.+   |.+.|+|+|++..+...      ...+++|.|.+++.+|+|.|+|.+.+.   ...+...    
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~   85 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSA   85 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC---
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEecc
Confidence            3589999999999   78899999977554221      124568999999999999999998761   1111100    


Q ss_pred             ---------------------------------Cceeeee-cCceEEEEEEeeccCCceEEEEecCCeeeecCC-ceEEE
Q psy12803        376 ---------------------------------NRRVGVP-IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG-VKYSI  420 (902)
Q Consensus       376 ---------------------------------p~~~~v~-~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~-~~~~~  420 (902)
                                                       .....+. +|++++|.|.  +.|.|.+.|++++..+..... ..+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~  163 (204)
T 1sy6_A           86 DDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS  163 (204)
T ss_dssp             ---------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE
T ss_pred             ccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec
Confidence                                             0112244 8999999998  889999999998876643222 11111


Q ss_pred             eecCCCceeeEeEEEEecc-CCCCCeEEEEEEEeCCcee-EEEEEEEe
Q psy12803        421 SDVDKGSYQYIMQLNISNV-NISDFDTYRCISKNEVDIA-KGSLILFE  466 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V-~~~DsG~YtC~A~N~~G~~-~~s~~L~V  466 (902)
                       .  .      .+|.|.+| +.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       164 -~--~------~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          164 -D--E------DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             -E--T------TEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             -C--C------CEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence             1  2      24999999 9999999999999999963 55555554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.69  E-value=3.4e-17  Score=165.66  Aligned_cols=131  Identities=16%  Similarity=0.234  Sum_probs=97.5

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEe-eeeecCceeEEeecCC--CCEEE--E-
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTR-INRINMGAYMCLADNV--PPQIL--I-  374 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~-Vt~~DsG~YtC~A~N~--~P~i~--~-  374 (902)
                      ..+.+|++++|.|.+.+ +. .|+|+|++..+...        .+++|.|.+ ++.+|+|.|+|.|.|.  .....  . 
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            34578999999999998 43 49999977654321        345899999 9999999999999981  00000  0 


Q ss_pred             -----cC--------------------------ce---eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEE
Q psy12803        375 -----RN--------------------------RR---VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSI  420 (902)
Q Consensus       375 -----~p--------------------------~~---~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~  420 (902)
                           .+                          ..   ..+.+|+++.|.|.+   |.|.|.|++++..+.....     
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-----  150 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-----  150 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-----
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-----
Confidence                 00                          00   123489999999988   8899999998876542111     


Q ss_pred             eecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                         ..      .+|.|.+++.+|+|.|+|+|.|..|..
T Consensus       151 ---~~------~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 ---TK------NTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             ---CS------SCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ---Cc------ceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence               12      239999999999999999999999876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.69  E-value=4.6e-17  Score=181.28  Aligned_cols=153  Identities=16%  Similarity=0.207  Sum_probs=118.0

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC------------Ccccee------ccCCcEEEEeeeeecCceeE
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG------------SWKDSA------VASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~------------~~~~~~------~~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      +.+.+|++++|.|.+.+.|.+.|.|+|++..++...            ..+...      ....+|.|.+++.+|+|.|+
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence            678999999999999999999999999876432110            111111      13568999999999999999


Q ss_pred             EeecCCC-------CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        363 CLADNVP-------PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       363 C~A~N~~-------P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                      |.|.|..       ..+...+ ...+.+|++++|.|.+.+.|.|.+.|++++..+..           .      ..+|.
T Consensus        84 C~~~n~~~~~~l~V~~~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----------~------~~~L~  145 (363)
T 1wio_A           84 CEVEDQKEEVQLLVFGLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-----------G------GKTLS  145 (363)
T ss_dssp             EEETTEEEEEEEEEEEEEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE-----------E------SSEEE
T ss_pred             EEEEECCCcEEEEEEeCCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc-----------c------ceEEE
Confidence            9999911       0122223 34688999999999999999999999988765421           1      12499


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |.+++.+|+|.|+|.|.|..+....++.|.|..++.
T Consensus       146 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~  181 (363)
T 1wio_A          146 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  181 (363)
T ss_dssp             ECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC
T ss_pred             EeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC
Confidence            999999999999999999988888888888875544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.69  E-value=8e-17  Score=188.34  Aligned_cols=169  Identities=16%  Similarity=0.220  Sum_probs=122.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccc--cc--------CCccceec---cCCcEEEEeeeeecCce
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPI--TL--------GSWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~--~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      ..+..+.+.+|++++|.|.+.+.|.+.|.|+|++.  .+.  ..        ...+....   ...+|.|.+++.+|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEE
Confidence            34566889999999999999999999999999752  111  00        01122211   12379999999999999


Q ss_pred             eEEeecC---------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCc--eEEEEecCCeeeecCCce
Q psy12803        361 YMCLADN---------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLS--VRYWEFIDGTLIEHDGVK  417 (902)
Q Consensus       361 YtC~A~N---------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~  417 (902)
                      |+|.|.|                     .+|.+...+....+.+|+.+.|.|.+.+.|++  .|.|++++..+...  ..
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~--~~  162 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG--VE  162 (523)
T ss_pred             EEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCc--eE
Confidence            9999987                     12344444444556689999999999998764  89999988766421  11


Q ss_pred             EE-EeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        418 YS-ISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       418 ~~-~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      +. ......+.+...++|.|.+++.+|+|.|+|.|.|..+....++.+.+
T Consensus       163 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~  212 (523)
T 2rcj_C          163 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  212 (523)
T ss_pred             eccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeee
Confidence            11 11233455556678999999999999999999999988776666543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.69  E-value=9.5e-17  Score=173.96  Aligned_cols=167  Identities=18%  Similarity=0.214  Sum_probs=115.9

Q ss_pred             CcEEEEcCCeEEEEEecCC-CCCCceEEecCCCccccc---------------CCccce----eccCCcEEEEeeeeecC
Q psy12803        299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITL---------------GSWKDS----AVASSTLNFTRINRINM  358 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~---------------~~~~~~----~~~~~sL~I~~Vt~~Ds  358 (902)
                      ..+++.+|++|+|.|.+.+ .+.+.|+|+|++......               ...+..    ...+.+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3477899999999999875 455679999976542210               001111    12345899999999999


Q ss_pred             ceeEEeecC---------------CCCEE--EEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEE
Q psy12803        359 GAYMCLADN---------------VPPQI--LIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSI  420 (902)
Q Consensus       359 G~YtC~A~N---------------~~P~i--~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~  420 (902)
                      |.|+|.|.|               ..|.+  ...+.......|+.+.|.|.+ .+.|.|.|.|++++..+....      
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~------  160 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT------  160 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEE------
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccc------
Confidence            999999976               22222  223344445678899999975 689999999999887663311      


Q ss_pred             eecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEeecCCC
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGSLILFESNAKT  471 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~~p~  471 (902)
                      ...........+.|.|..+..+|+|.|+|.|.|..+..  +.++.|.|..+|.
T Consensus       161 ~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~  213 (308)
T 4fom_A          161 TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPE  213 (308)
T ss_dssp             EECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEE
T ss_pred             ceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCe
Confidence            11223334456779999999999999999999988765  4555665655443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.69  E-value=1.6e-16  Score=166.99  Aligned_cols=168  Identities=18%  Similarity=0.219  Sum_probs=113.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCCc--c--c-------------ccCCccceecc-----CCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSENK--P--I-------------TLGSWKDSAVA-----SSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~~--~--~-------------~~~~~~~~~~~-----~~sL~I  350 (902)
                      +..+..+.+.+|++|+|.|.+.+.|  .+.|.|+|.+..  +  +             .....+.....     ..+|+|
T Consensus         6 v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (247)
T 2ghw_B            6 LVQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM   85 (247)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence            3345568899999999999999987  688999985321  1  0             00111222211     237999


Q ss_pred             EeeeeecCceeEEeecCC-------------------------------CCEEEEcCceeeeecCceEEEEEEeeccCCc
Q psy12803        351 TRINRINMGAYMCLADNV-------------------------------PPQILIRNRRVGVPIGRTATLECEVEAFPLS  399 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~-------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P  399 (902)
                      .+++.+|+|.|+|.|.|.                               ++.+...+..+.+.+|++++|.|.+.+.|.+
T Consensus        86 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  165 (247)
T 2ghw_B           86 NSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS  165 (247)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT
T ss_pred             CcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc
Confidence            999999999999999772                               1223334556678899999999999999999


Q ss_pred             eEEEEe--cCCeee--e--------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEEe
Q psy12803        400 VRYWEF--IDGTLI--E--------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILFE  466 (902)
Q Consensus       400 ~v~W~k--~~~~l~--~--------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V  466 (902)
                      .+.|++  ++..+.  .        ....++.+....     ...+|.|.+++.+|+|.|+|.|.|..... .....|.|
T Consensus       166 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          166 NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSG-----TDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSS-----SEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCC-----CeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence            999998  333221  0        011223222111     13469999999999999999999864433 23445555


Q ss_pred             e
Q psy12803        467 S  467 (902)
Q Consensus       467 ~  467 (902)
                      .
T Consensus       241 ~  241 (247)
T 2ghw_B          241 K  241 (247)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.69  E-value=5.8e-17  Score=166.15  Aligned_cols=161  Identities=16%  Similarity=0.216  Sum_probs=111.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--ccc---cc-----------CCccceec-----cCCcEEEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPI---TL-----------GSWKDSAV-----ASSTLNFTRI  353 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~---~~-----------~~~~~~~~-----~~~sL~I~~V  353 (902)
                      .+..+.+.+|++|+|.|.+.+.|  .+.|.|+|++.  .+.   ..           ...+....     .+.+|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            45567899999999999999865  48999998631  110   00           01122221     1238999999


Q ss_pred             eeecCceeEEeecC-----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecC
Q psy12803        354 NRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHD  414 (902)
Q Consensus       354 t~~DsG~YtC~A~N-----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~  414 (902)
                      +.+|+|.|+|.+.|                 .+|.+...+....+.+|+.++|.|.+.+. |.| .|.|++++..+....
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           86 TTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             CGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             CcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            99999999999987                 12333332222345689999999999987 888 999988876432111


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      .....  ..  +.+...++|.|.++..+| |.|+|.|.|..|......
T Consensus       166 ~~~~~--~~--~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          166 FPAVL--QS--DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             CCCEE--ET--TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCcc--CC--CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            11111  11  445556789999999877 999999999998875543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.69  E-value=1.6e-16  Score=165.73  Aligned_cols=155  Identities=18%  Similarity=0.220  Sum_probs=106.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccc-------------ccCCccceec----cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPI-------------TLGSWKDSAV----ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~-------------~~~~~~~~~~----~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|. .+.|.+.|.|+|++.  .+.             .....+....    ...+|+|.+++.+|
T Consensus         6 ~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D   84 (238)
T 2p1y_A            6 SPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQ   84 (238)
T ss_dssp             ECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGG
T ss_pred             CccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCccc
Confidence            456688999999999999 778899999999521  110             0001122221    23479999999999


Q ss_pred             CceeEEeecCC--------------------CC-----------EEEEcCceeeeecCceEEEEEEeeccCCceEEEEec
Q psy12803        358 MGAYMCLADNV--------------------PP-----------QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI  406 (902)
Q Consensus       358 sG~YtC~A~N~--------------------~P-----------~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~  406 (902)
                      +|.|+|.|.|.                    ++           .+...+..+.+.+|++++|.|.+.+.|.+.+.|+++
T Consensus        85 sG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~  164 (238)
T 2p1y_A           85 TSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQ  164 (238)
T ss_dssp             CEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEE
T ss_pred             CeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEE
Confidence            99999999861                    00           233334556788999999999999999999999986


Q ss_pred             CC----eeee--------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        407 DG----TLIE--------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       407 ~~----~l~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      +.    ..+.        ....++.+......   ...+|.|.+++.+|+|.|+|.|.|..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          165 FPGEGPALLISILSVSDKKEDGRFTIFFNKRE---KKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CTTSCCEEEEEEETTCSEEEETTEEEEEETTT---TEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCCCCCEEEEEEccCCCcccCCceEEEecCCC---CeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            42    1110        00112222111111   13569999999999999999999984

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.69  E-value=7.2e-17  Score=170.60  Aligned_cols=162  Identities=15%  Similarity=0.290  Sum_probs=111.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-----CCceEEecCCCc--c--cc--------cCCccceec---cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-----KPSIIWKTSENK--P--IT--------LGSWKDSAV---ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-----~p~v~W~k~~~~--~--~~--------~~~~~~~~~---~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.|.+.+.|     .+.|.|+|++..  +  +.        ....+....   .+.+|+|.+++.+
T Consensus        40 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  119 (252)
T 3bkj_L           40 TPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAE  119 (252)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcc
Confidence            46778899999999999999987     689999996521  1  00        001122222   1238999999999


Q ss_pred             cCceeEEeecCC------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCc
Q psy12803        357 NMGAYMCLADNV------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGV  416 (902)
Q Consensus       357 DsG~YtC~A~N~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~  416 (902)
                      |+|.|+|.|.|.                  +|.+...+....+.+|+.++|.|.+.+. |.+ .|.|++++..+......
T Consensus       120 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  199 (252)
T 3bkj_L          120 DLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  199 (252)
T ss_dssp             GCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEE
T ss_pred             cCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeee
Confidence            999999999881                  2333332222223468999999999984 554 79999987665321011


Q ss_pred             eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        417 KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       417 ~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      ........++.+...++|.|.++..+|+|.|+|.|.|.....
T Consensus       200 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          200 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            111222344566677889999999999999999999987654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.69  E-value=3.4e-17  Score=178.90  Aligned_cols=162  Identities=18%  Similarity=0.302  Sum_probs=119.5

Q ss_pred             cCCcEEEEcC---CeEEEEEe-cCCCCCCceEEecCCCcccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC--
Q psy12803        297 SSSPIVVREG---DNVRLRCV-ATGHPKPSIIWKTSENKPITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN--  367 (902)
Q Consensus       297 ~~~~v~v~eG---e~v~L~C~-a~G~P~p~v~W~k~~~~~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--  367 (902)
                      .+..+.+.+|   +.++|.|. +.+.|.+.+.|+|+.........   ........+.|.|.+++.+|+|.|+|.|.|  
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  217 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHM  217 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETT
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCC
Confidence            4556788899   88999998 88899999999996333211100   001111123577778899999999999998  


Q ss_pred             ------------CCCEEEE-cCceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        368 ------------VPPQILI-RNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       368 ------------~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                                  .+|.+.. .+....+.+|++++|.|.+.+.|.|. +.|++++..+..  ...  .   .      ..+
T Consensus       218 ~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~--~~~--~---~------~~~  284 (331)
T 3u83_A          218 DRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK--GVE--A---Q------NRT  284 (331)
T ss_dssp             EEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCT--TEE--E---E------TTE
T ss_pred             CcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccc--cce--e---c------CcE
Confidence                        3555554 33345578899999999999999998 999998876632  111  1   1      124


Q ss_pred             EEEe-ccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        434 LNIS-NVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       434 L~I~-~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |.|. +++.+|+|.|+|.|.|..|..+.++.|.|.....
T Consensus       285 L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  323 (331)
T 3u83_A          285 LFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAA  323 (331)
T ss_dssp             EEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC---
T ss_pred             EEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccch
Confidence            9999 9999999999999999999999999999987544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.68  E-value=4.3e-17  Score=178.13  Aligned_cols=171  Identities=19%  Similarity=0.240  Sum_probs=122.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCC----CCCceEEecCCCccc---------------ccCCccce----eccCCcEEEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGH----PKPSIIWKTSENKPI---------------TLGSWKDS----AVASSTLNFTR  352 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~----P~p~v~W~k~~~~~~---------------~~~~~~~~----~~~~~sL~I~~  352 (902)
                      ..+.++.+.+|++++|.|.+.+.    +.+.+.|+|++....               .....+..    ...+.+|.|.+
T Consensus        19 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   98 (331)
T 3u83_A           19 QVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSR   98 (331)
T ss_dssp             --CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECS
T ss_pred             EcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcc
Confidence            34556889999999999999886    556799999542110               01111222    12356899999


Q ss_pred             eeeecCceeEEeec-C--------------CCCEEEE--cCceeeeecC---ceEEEEEE-eeccCCceEEEEecCCeee
Q psy12803        353 INRINMGAYMCLAD-N--------------VPPQILI--RNRRVGVPIG---RTATLECE-VEAFPLSVRYWEFIDGTLI  411 (902)
Q Consensus       353 Vt~~DsG~YtC~A~-N--------------~~P~i~~--~p~~~~v~~G---~~v~L~C~-a~g~P~P~v~W~k~~~~l~  411 (902)
                      ++.+|+|.|+|.+. |              .+|.+..  .+..+.+.+|   +.+.|.|. +.+.|.|.+.|+++.....
T Consensus        99 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~  178 (331)
T 3u83_A           99 LELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA  178 (331)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred             cCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcc
Confidence            99999999999854 3              3454432  4455677888   78999997 8899999999998633221


Q ss_pred             ecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       412 ~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .     ........+.+...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       179 ~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~  233 (331)
T 3u83_A          179 E-----YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE  233 (331)
T ss_dssp             E-----EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEE
T ss_pred             c-----cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCe
Confidence            1     111223344455667899999999999999999999999999999888875543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.68  E-value=2.2e-16  Score=161.21  Aligned_cols=144  Identities=15%  Similarity=0.168  Sum_probs=101.8

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecC-----------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADN-----------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----------  367 (902)
                      ..+.+|++|+|.|.+.+ +.+.+.|+|++..+.......  .....++.|.|.+++.+|+|.|+|.|.|           
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s   95 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS   95 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence            66889999999999985 778999999876543211100  0112346899999999999999999953           


Q ss_pred             -----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEE
Q psy12803        368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       368 -----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                                 .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|++++..+..... .... ...    ....+|.|
T Consensus        96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~-~~~----~~~~~L~i  167 (201)
T 1nkr_A           96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLP-AGPK-VNG----TFQADFPL  167 (201)
T ss_dssp             CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEE-CEEE-ETT----EEEEEEEE
T ss_pred             CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccc-cccc-cCC----ceEEEEEe
Confidence                       1244444343 36789999999999986 5688999998866532111 1111 110    12456999


Q ss_pred             eccCCCCCeEEEEEEEeCC
Q psy12803        437 SNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~  455 (902)
                      .+|+  |+|.|+|.|.+..
T Consensus       168 ~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          168 GPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EECC--SCEEEEEEEEETT
T ss_pred             CCcC--CCeeEEEEEEcCC
Confidence            9998  9999999999764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.67  E-value=1.3e-16  Score=166.56  Aligned_cols=170  Identities=15%  Similarity=0.208  Sum_probs=111.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--cc--c-----------CCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--IT--L-----------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~--~-----------~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.|.|+|.+.  .+  +.  .           ...+....     .+.+|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            345668899999999999999876  68899998642  11  10  0           01122221     23489999


Q ss_pred             eeeeecCceeEEeecCC-------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCee
Q psy12803        352 RINRINMGAYMCLADNV-------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTL  410 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~-------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l  410 (902)
                      +++.+|+|.|.|.+.|.                   +|.+........+.+|+.++|.|.+.+. |.+ .|.|++++..+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            99999999999999761                   1333322222235679999999999986 777 99998887543


Q ss_pred             eecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        411 IEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       411 ~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      .........   .. +.+...++|.|..+..+| |.|+|.|.|..+.....+.+.+..+|
T Consensus       165 ~~~~~~~~~---~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p  219 (227)
T 1mju_H          165 GVHTFPAVL---QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT  219 (227)
T ss_dssp             TEEECCCEE---ET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred             CcEECCcee---cC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence            111111111   11 445567789999999888 99999999988777666666555443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.67  E-value=4.1e-16  Score=158.30  Aligned_cols=160  Identities=13%  Similarity=0.237  Sum_probs=107.4

Q ss_pred             cEEEEcCCeEEEEEecCC----CCCCceEEecCCCcccccC----------Cccce--eccCCcEEEEeeeeecCceeEE
Q psy12803        300 PIVVREGDNVRLRCVATG----HPKPSIIWKTSENKPITLG----------SWKDS--AVASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G----~P~p~v~W~k~~~~~~~~~----------~~~~~--~~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      .+.+.+|++|+|.|.+.+    .|.+.+.|+|++..+....          ..+..  ...+.+|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            477999999999999964    4678899999765542110          01111  2345689999999999999999


Q ss_pred             eecCC---CC------EE--EEcC----ceee---eecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecC
Q psy12803        364 LADNV---PP------QI--LIRN----RRVG---VPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVD  424 (902)
Q Consensus       364 ~A~N~---~P------~i--~~~p----~~~~---v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~  424 (902)
                      .|.|.   ..      .+  .+..    ..+.   ...|+.++|.|.+. +.|.|.|.|++++..+.. ....+.. ...
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~-~~~~~~~-~~~  160 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNA-INTTVSQ-DPE  160 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECC-SEEEEEE-CTT
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECcc-ccceEEe-cCC
Confidence            99981   11      11  1111    1111   24578999999995 999999999998776643 2222221 122


Q ss_pred             CCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       425 ~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      .+.+...++|   .+..+|+|.|+|.|.|..|..++.+.+
T Consensus       161 ~~~~~~~~~~---~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          161 TELYAVSSKL---DFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             TCCEEEEEEE---EEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CcEEEEEEEE---EEEecCCCEEEEEEecCcceeeeEEec
Confidence            2333333333   445689999999999999998887765

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.67  E-value=1.9e-16  Score=166.49  Aligned_cols=140  Identities=19%  Similarity=0.196  Sum_probs=108.6

Q ss_pred             ecCCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803        296 FSSSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------  367 (902)
                      ..+....+.+|+++.|.|.+ .+.|.+.+.|+|++..+..       ...+..|.|.+++.+|+|.|+|.|.|       
T Consensus        87 ~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~  159 (262)
T 3rjd_A           87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF-------FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSA  159 (262)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEESSSEEEEE
T ss_pred             ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc-------cCCCCeEEEEECChhhCEEEEEEEeCCCCcccc
Confidence            34455678899999999999 6788899999997655421       22356899999999999999999988       


Q ss_pred             ----------CCCEEEEcCceeeeecCceEEEEEEeeccCC-ce----EEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 ----------VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SV----RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 ----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~----v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                .+|.+...+ ...+.+|+.+.|.|.+.+.|. |.    +.|++++..+...         ..      .+
T Consensus       160 ~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~---------~~------~~  223 (262)
T 3rjd_A          160 GISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---------NT------SS  223 (262)
T ss_dssp             CEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE---------ES------CC
T ss_pred             ceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc---------CC------Cc
Confidence                      244554444 556889999999999999986 54    6787776655321         11      23


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      +|.|.+++.+|+|.|+|.|.|..|..
T Consensus       224 ~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          224 EYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             eEEEEEechhhCeEEEEEEEcccCce
Confidence            49999999999999999999999975

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.67  E-value=3.7e-17  Score=201.66  Aligned_cols=204  Identities=19%  Similarity=0.239  Sum_probs=141.1

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecC-----
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADN-----  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N-----  367 (902)
                      .+.......+.+|++++|.|.+.+.|.+.+.|+|++..+..  ..+.....+++|.|.+++ .+|+|.|+|.|.|     
T Consensus       529 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~  606 (816)
T 3dmk_A          529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPI--NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYS  606 (816)
T ss_dssp             EECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCC--STTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCE
T ss_pred             eeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEccc--CCceEEecCCeEEEEecCccccCEEEEEEEEECCCce
Confidence            34445567889999999999999999999999997765432  223344567899999998 5899999999998     


Q ss_pred             ----------CCCEEEE-cCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEE
Q psy12803        368 ----------VPPQILI-RNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       368 ----------~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~  435 (902)
                                .+|.+.. ......+.+|+.++|.|.+.+.|.+ .+.|++++..+...........  ..    ..++|.
T Consensus       607 ~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~--~~----~~~~L~  680 (816)
T 3dmk_A          607 ARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRV--GR----RGSVLT  680 (816)
T ss_dssp             EEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEE--TT----TEEEEE
T ss_pred             eeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEc--CC----CeeEEE
Confidence                      1222211 1234567899999999999877655 8999998877644333222211  11    235699


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCCCCCCcceEEEEeCCCCCCccccCCCCcccCCCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPC  507 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~C~~~~v~~~c  507 (902)
                      |.+++.+|+|.|+|.|.|..|..+.++.|.|..+|......  .......+....+.|.....+.+.+-|..
T Consensus       681 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~P~p~i~W~k  750 (816)
T 3dmk_A          681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWKK  750 (816)
T ss_dssp             EESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECC--CCEEEETTCCEEEECEEEEESCCEEECCE
T ss_pred             EccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeec--ccceecCCCcEEEEEEEecCCCCeEEEEe
Confidence            99999999999999999999999999999988765432111  11222223334455444444444555553

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.67  E-value=2.6e-16  Score=166.70  Aligned_cols=157  Identities=12%  Similarity=0.127  Sum_probs=110.4

Q ss_pred             EEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------------
Q psy12803        302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------------  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------------  367 (902)
                      .|.+|++|+|.|.+.+ +...+.|+|++..+............+..|.|.+|+.+|+|.|+|.+.|              
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~   95 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   95 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence            7899999999999986 4568999998765432111111223346899999999999999999965              


Q ss_pred             -----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 -----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 -----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                           .+|.+...+ ...+.+|++|+|.|.+.+.+ +.+.|++++..+..    ... . ..     ...+|.|.+|+.+
T Consensus        96 V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~----~~~-~-~~-----~~~~l~I~~v~~~  162 (242)
T 1p6f_A           96 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHV----QRG-Y-GK-----VQAEFPLGPVTTA  162 (242)
T ss_dssp             EECCSCCCEEEEES-CSEEETTCEEEEEEECTTSC-SEEEEEECSSSCEE----EEE-E-CS-----SEEEEEEEECCGG
T ss_pred             eecccCCCceEccC-CCccCCCCcEEEEEecCCCC-CEEEEEECCCccCc----ccc-C-CC-----ceEEEEeCCCccc
Confidence                 134444444 24578999999999998654 69999998866543    111 1 11     1346999999999


Q ss_pred             CCeEEEEEEEeCC---ceeEEEEEEEeecCCCC
Q psy12803        443 DFDTYRCISKNEV---DIAKGSLILFESNAKTP  472 (902)
Q Consensus       443 DsG~YtC~A~N~~---G~~~~s~~L~V~~~p~~  472 (902)
                      |+|.|+|.|.|..   ...+..+.|.|...+..
T Consensus       163 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~  195 (242)
T 1p6f_A          163 HRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN  195 (242)
T ss_dssp             GCEEEEEEEEEETTEECCCCCCEEEEEEC----
T ss_pred             cCEEEEEEEECCCCcccCCCCCEEEEEeccCCC
Confidence            9999999999874   23356677877765443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.67  E-value=3e-16  Score=165.94  Aligned_cols=172  Identities=20%  Similarity=0.260  Sum_probs=114.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC-C-ccccc---------------CCccceecc-----CCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE-N-KPITL---------------GSWKDSAVA-----SSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~-~-~~~~~---------------~~~~~~~~~-----~~sL~I  350 (902)
                      +..+.++.+.+|++|+|.|.+.+.+  .+.+.|+|.. . .+...               ...+.....     ..+|+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            3456678899999999999999854  7899999832 1 11100               011222221     124999


Q ss_pred             EeeeeecCceeEEeecC--------------C----------------CCEEEEcCceeeeecCceEEEEEEeeccCCc-
Q psy12803        351 TRINRINMGAYMCLADN--------------V----------------PPQILIRNRRVGVPIGRTATLECEVEAFPLS-  399 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N--------------~----------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-  399 (902)
                      .+++.+|+|.|+|.|.|              .                ++.+...+..+.+.+|++++|.|.+.+.|.+ 
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  164 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRY  164 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEET
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccC
Confidence            99999999999999987              1                2445555666789999999999999999887 


Q ss_pred             ---eEEEEecC--Cee--eecC--------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEE
Q psy12803        400 ---VRYWEFID--GTL--IEHD--------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLI  463 (902)
Q Consensus       400 ---~v~W~k~~--~~l--~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~  463 (902)
                         .+.|+++.  ..+  +...        ..++......     ...+|.|.+++.+|+|.|+|.|.|..+.. ....+
T Consensus       165 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~  239 (253)
T 3uzq_A          165 GNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSR-----TDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK  239 (253)
T ss_dssp             TEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred             CCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCC-----CEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence               99999853  211  1100        1122221111     13469999999999999999999975443 23445


Q ss_pred             EEeecCCC
Q psy12803        464 LFESNAKT  471 (902)
Q Consensus       464 L~V~~~p~  471 (902)
                      |.|...++
T Consensus       240 l~v~~~~~  247 (253)
T 3uzq_A          240 LEIKRPLE  247 (253)
T ss_dssp             EEECCC--
T ss_pred             EEEcCCCC
Confidence            66655443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.67  E-value=9.2e-17  Score=176.01  Aligned_cols=162  Identities=17%  Similarity=0.244  Sum_probs=107.7

Q ss_pred             cEEEEcCCeEEEEEecCCCCCC--ceEEecCCCcccccCCccc------eeccCCcEEEEeeeeecCceeEEeecC----
Q psy12803        300 PIVVREGDNVRLRCVATGHPKP--SIIWKTSENKPITLGSWKD------SAVASSTLNFTRINRINMGAYMCLADN----  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~~~~~------~~~~~~sL~I~~Vt~~DsG~YtC~A~N----  367 (902)
                      ...+.+|++++|.|.+.+.|.+  .++|+|++..+........      .....+.|.|.....+|+|.|+|.|.|    
T Consensus       126 ~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            3567899999999999997765  8999998765432221000      111123577777777788999999998    


Q ss_pred             ---------------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceee
Q psy12803        368 ---------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQY  430 (902)
Q Consensus       368 ---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~  430 (902)
                                     .+|.+...+..  +.+|+.++|.|.+.+. |++ .|.|++++..+.......  +....++.+..
T Consensus       206 ~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~--~~~~~~g~~~~  281 (327)
T 2wng_A          206 GDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAST--VTENKDGTYNW  281 (327)
T ss_dssp             SCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCS--CEECTTSCEEE
T ss_pred             CCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCc--eEECCCCcEEE
Confidence                           23444433322  6689999999999995 444 899999887765432222  22344556677


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILF  465 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~  465 (902)
                      .+.|.|..+..+|+|.|+|.|.|..+.. +.++.+.
T Consensus       282 ~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~  317 (327)
T 2wng_A          282 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLK  317 (327)
T ss_dssp             EEEEEC-------CCEEEEEEEETTCCCEEEEEECC
T ss_pred             EEEEEEccccccCCCEEEEEEEeCCCCCchhheEEE
Confidence            7889999999999999999999999875 4444443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.67  E-value=3.9e-17  Score=169.82  Aligned_cols=160  Identities=14%  Similarity=0.286  Sum_probs=95.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc-cc---c--------cCCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK-PI---T--------LGSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~-~~---~--------~~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.|.|+|++.. ..   .        ....+....   .+.+|.|.+++.+|+|.|
T Consensus        29 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  108 (233)
T 3bqu_C           29 SPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADY  108 (233)
T ss_dssp             ECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEE
T ss_pred             cCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEE
Confidence            36678899999999999999988889999986421 10   0        001111111   123799999999999999


Q ss_pred             EEeecC------------------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEe
Q psy12803        362 MCLADN------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       362 tC~A~N------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      +|.|.|                  .+|.+...+....+.+|++++|.|.+.+. |.+ .|.|++++..+...........
T Consensus       109 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  188 (233)
T 3bqu_C          109 YCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  188 (233)
T ss_dssp             EEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCC
T ss_pred             EEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCc
Confidence            999987                  13444443332233469999999999985 443 7999998766532101111122


Q ss_pred             ecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        422 DVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      ...++.+...++|.|..+..+|+|.|+|.|.|...
T Consensus       189 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          189 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            23445566778899999999999999999999754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.67  E-value=1.4e-16  Score=173.35  Aligned_cols=171  Identities=14%  Similarity=0.134  Sum_probs=122.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCC-----ceEEecCCCcccc-----------cCCccc--------eeccCCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKP-----SIIWKTSENKPIT-----------LGSWKD--------SAVASSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p-----~v~W~k~~~~~~~-----------~~~~~~--------~~~~~~sL~I  350 (902)
                      +..|.++++.+|++|+|.|.+.+.+.+     .|+|+|++.....           ....+.        ....+.+|.|
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence            345667888999999999999886655     3899997654211           000111        1123457999


Q ss_pred             EeeeeecCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecC
Q psy12803        351 TRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHD  414 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~  414 (902)
                      .+++.+|+|.|+|.+.+               .+|.+........+..++.+.|.|.+. +.|.+.+.|++++..+....
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~  163 (313)
T 4fqp_A           84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS  163 (313)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE
T ss_pred             CcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc
Confidence            99999999999998854               456666555566677888999999875 78999999999887764321


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEeecC
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGSLILFESNA  469 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~~  469 (902)
                          .......+.+...+.|.|..+..+|+|.|+|.|.|..+..  ..++.|.|..+
T Consensus       164 ----~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~  216 (313)
T 4fqp_A          164 ----QVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP  216 (313)
T ss_dssp             ----EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE
T ss_pred             ----eeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC
Confidence                1222334445566789999999999999999999987665  44555555443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.67  E-value=4.2e-16  Score=158.56  Aligned_cols=146  Identities=18%  Similarity=0.137  Sum_probs=100.3

Q ss_pred             CCcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccc--cC----------C----ccceeccCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPIT--LG----------S----WKDSAVASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~--~~----------~----~~~~~~~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|.+.+ .+.+.|.|+|++..+..  ..          .    .+.....+++|+|.+++.+|+|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            44578999999999999986 45679999997543211  00          0    12223356799999999999999


Q ss_pred             eEEeecCCC-----------------CEEEEcCceeeeecCc-eEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEe
Q psy12803        361 YMCLADNVP-----------------PQILIRNRRVGVPIGR-TATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSIS  421 (902)
Q Consensus       361 YtC~A~N~~-----------------P~i~~~p~~~~v~~G~-~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~  421 (902)
                      |+|.|.|..                 |.+....  ..+..|. +++|.|.+.+. |.|.+.|++++..+..  .      
T Consensus        85 Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~--~------  154 (193)
T 2if7_A           85 YRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS--Q------  154 (193)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--S------
T ss_pred             EEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--C------
Confidence            999998811                 1111111  1123455 89999999985 5899999987654321  1      


Q ss_pred             ecCCCceeeEeEEEEeccCCC-CCeEEEEEEEeCCceeEEEEE
Q psy12803        422 DVDKGSYQYIMQLNISNVNIS-DFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       422 ~~~~~s~~~~stL~I~~V~~~-DsG~YtC~A~N~~G~~~~s~~  463 (902)
                                ..|.|.....+ |+|.|+|.|.|.+|..+..+.
T Consensus       155 ----------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          155 ----------PNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             ----------SEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             ----------CeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence                      12666554554 899999999999998866543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.67  E-value=5.4e-17  Score=191.41  Aligned_cols=162  Identities=16%  Similarity=0.199  Sum_probs=108.3

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-------------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------------  367 (902)
                      ....+|+.+.|.|.+.|+|.|.|+|++++.......   ......-.+.+..+..+|+|.|+|.|.|             
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~  225 (527)
T 3qs9_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID  225 (527)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEE
T ss_pred             cEEecCCceEEEEEEceecCCeEEEEECCCCCcccc---ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEE
Confidence            445678889999999999999999999775432110   0000011122334557899999999998             


Q ss_pred             --CCCEEEEcCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 --VPPQILIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 --~~P~i~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                        .+|.+  .+..+.+.+|+.+.|.|.+. +.|.+.|.|++++..+......... ............+|.|.+++.+|+
T Consensus       226 V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~Ds  302 (527)
T 3qs9_E          226 LNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMS-TYSTNRTMIRILFAFVSSVARNDT  302 (527)
T ss_dssp             SSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEE-EEETTTEEEEEEEEEESSCCGGGC
T ss_pred             EeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeee-eeccCcceeeEEEEEEccCCcccC
Confidence              12222  34567889999999999997 8999999999988766432211111 111122223345699999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |.|+|.|.|.   .+.++.|.|..++.
T Consensus       303 G~Y~C~a~N~---~~~~~~L~V~~~p~  326 (527)
T 3qs9_E          303 GYYTCSSSKH---PSQSALVTIVEKGF  326 (527)
T ss_dssp             EEEEEEETTE---EEEEEEEEEC--CE
T ss_pred             eEEEEEEEeC---CCceEEEEEEccCc
Confidence            9999999998   67778888876554

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.67  E-value=3.1e-16  Score=166.07  Aligned_cols=170  Identities=18%  Similarity=0.241  Sum_probs=114.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--ccccc---------------CCccceecc-----CCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPITL---------------GSWKDSAVA-----SSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~~~---------------~~~~~~~~~-----~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|...  .+...               ...+.....     ..+|+|.
T Consensus         7 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (256)
T 3umt_A            7 QQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELR   86 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEEC
Confidence            344557799999999999999866  78999998431  11000               011112111     2259999


Q ss_pred             eeeeecCceeEEeecCC----------------------------------CCEEEEcCceeeeecCceEEEEEEeeccC
Q psy12803        352 RINRINMGAYMCLADNV----------------------------------PPQILIRNRRVGVPIGRTATLECEVEAFP  397 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~----------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P  397 (902)
                      +++.+|+|.|.|.+.|.                                  ++.+...+..+.+.+|++++|.|.+.+.|
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  166 (256)
T 3umt_A           87 SLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDI  166 (256)
T ss_dssp             SCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             CCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCC
Confidence            99999999999999872                                  44555556667899999999999999999


Q ss_pred             CceEEEEecC--Ceee--ec--------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEE
Q psy12803        398 LSVRYWEFID--GTLI--EH--------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLIL  464 (902)
Q Consensus       398 ~P~v~W~k~~--~~l~--~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L  464 (902)
                      .+.+.|++..  ..+.  ..        ...++......     ...+|.|.+++.+|+|.|+|.|.|..... .....|
T Consensus       167 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L  241 (256)
T 3umt_A          167 GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSG-----SDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKL  241 (256)
T ss_dssp             TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEET-----TEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEE
T ss_pred             CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCC-----CEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEE
Confidence            8999999853  2211  00        01222222111     13469999999999999999999965443 234566


Q ss_pred             EeecCC
Q psy12803        465 FESNAK  470 (902)
Q Consensus       465 ~V~~~p  470 (902)
                      .|...+
T Consensus       242 ~V~~~~  247 (256)
T 3umt_A          242 EIKRAA  247 (256)
T ss_dssp             EEC---
T ss_pred             EEECCC
Confidence            666543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.66  E-value=3e-16  Score=162.17  Aligned_cols=164  Identities=15%  Similarity=0.232  Sum_probs=111.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC-c-c--cc----c-----------CCccceec-----cCCcEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN-K-P--IT----L-----------GSWKDSAV-----ASSTLNF  350 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~-~-~--~~----~-----------~~~~~~~~-----~~~sL~I  350 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.+.|+|.+. . +  +.    .           ...+....     .+.+|+|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            44567899999999999999865  78899998542 1 1  00    0           01122222     1248999


Q ss_pred             EeeeeecCceeEEeecCCC-----------------------CEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEe
Q psy12803        351 TRINRINMGAYMCLADNVP-----------------------PQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEF  405 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~~-----------------------P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k  405 (902)
                      .+++.+|+|.|.|.+.|..                       |.+........+.+|+.++|.|.+.+. |.| .|.|++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence            9999999999999998721                       111111111224579999999999986 888 999988


Q ss_pred             cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      ++..+...   ...... ..+.+...+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus       166 ~g~~~~~~---~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          166 GSLSSGVH---TFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             GTBCTTEE---EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CCeEcceE---eccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            77543211   111111 12355566789999999999 999999999999876655543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.66  E-value=1.3e-16  Score=171.39  Aligned_cols=152  Identities=16%  Similarity=0.255  Sum_probs=114.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+.++.+.+|++++|.|.+.+    .+.|+|++..+      ......+++|.|.+++.+|+|.|+|.|.|         
T Consensus        18 ~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~~l~   87 (290)
T 2o26_X           18 AQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN------EMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF   87 (290)
T ss_dssp             CSSEEEEETTSCEEEEEECTT----EEEEEEECSSS------CEEEECSSEEEETTCCGGGCEEEEEEESSSCEEEEEEE
T ss_pred             CCCeEEEcCCCcEEEEECCCC----cEEEecCCcce------eeecCCCceEEEeccCHHhCeEEEEEeeCCccEEEEEE
Confidence            456688999999999999998    89999988765      11222347999999999999999999987         


Q ss_pred             --CCCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 --VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 --~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                        .+|.+...+..+.+.+|+.+.|.|.+.+ |. +.+.|++.++..+. ...++.....  .      .|.|.+++.+|+
T Consensus        88 V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~-~~~~~~~~~~--~------~L~i~~v~~~d~  157 (290)
T 2o26_X           88 VRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLP-TDLTFVPNPK--A------GITIKNVKRAYH  157 (290)
T ss_dssp             EECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCC-TTCEEEEETT--T------EEEEESCCGGGT
T ss_pred             EeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCC-CCCceeeCCC--C------CEEEecccHHHC
Confidence              3333334455677889999999999995 87 99999654444332 2333333221  2      399999999999


Q ss_pred             e-EEEEEEEeCCceeE-EEEEEEeec
Q psy12803        445 D-TYRCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       445 G-~YtC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      | .|+|.|.|..+... ..+.|.|..
T Consensus       158 G~~Y~C~a~n~~~~~~s~~~~l~V~~  183 (290)
T 2o26_X          158 RLCVRCAAQRDGTWLHSDKFTLKVRE  183 (290)
T ss_dssp             TCEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCEEEEEEEECCceEEeEEEEEEEEe
Confidence            9 99999999966643 357777763

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.66  E-value=6.4e-16  Score=164.42  Aligned_cols=169  Identities=18%  Similarity=0.246  Sum_probs=113.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--ccc-------------CCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--ITL-------------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~~-------------~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.|  .+.|.|+|.+.  .+  +..             ...+....     ...+|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            455668899999999999999875  67999999532  11  000             01122222     12479999


Q ss_pred             eeeeecCceeEEeecCC-------------------CCEEEEcCceeeeecCceEEEEEEeeccCCc-----eEEEEe--
Q psy12803        352 RINRINMGAYMCLADNV-------------------PPQILIRNRRVGVPIGRTATLECEVEAFPLS-----VRYWEF--  405 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~-------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-----~v~W~k--  405 (902)
                      +++.+|+|.|+|.|.|.                   ++.+...+..+.+.+|++++|.|.+.+.|.+     .|.|++  
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~  164 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK  164 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence            99999999999999883                   1223334556678999999999999999875     999998  


Q ss_pred             cCCeee--ec--------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEEeecC
Q psy12803        406 IDGTLI--EH--------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILFESNA  469 (902)
Q Consensus       406 ~~~~l~--~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V~~~  469 (902)
                      ++..+.  ..        ...++......     ...+|.|.+++.+|+|.|+|.|.|..... .....|.|..+
T Consensus       165 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          165 PGQSPKLLIYKVSNRFSGVPDRFSGSGSG-----TDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             TTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             CCCCcEEEEEEeCCCCCccCCcEEEEccC-----CEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            444331  10        01222221111     13469999999999999999999854332 23445666543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.66  E-value=2e-16  Score=163.36  Aligned_cols=163  Identities=17%  Similarity=0.250  Sum_probs=111.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC-c-c--c-ccC--------------Cccceec-----cCCcEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN-K-P--I-TLG--------------SWKDSAV-----ASSTLNF  350 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~-~-~--~-~~~--------------~~~~~~~-----~~~sL~I  350 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.|.|+|.+. . +  + ...              ..+....     .+.+|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            45668899999999999999866  78899998642 1 1  1 000              1122221     1238999


Q ss_pred             EeeeeecCceeEEeecCC---------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecC
Q psy12803        351 TRINRINMGAYMCLADNV---------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFID  407 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~---------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~  407 (902)
                      .+++.+|+|.|.|.+.|.                     +|.+...+....+.+|+.++|.|.+.+. |.| .|.|++++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            999999999999999872                     1222221112234679999999999988 988 99998877


Q ss_pred             CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      ............   .. +.+...++|.|.++..+| |.|+|.|.|..|..+.++.+
T Consensus       166 ~~~~~~~~~~~~---~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  217 (220)
T 1pz5_B          166 LSSGVRTVSSVL---QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI  217 (220)
T ss_dssp             CCTTEEECCCEE---ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cccceEEcCCcc---cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence            631000000011   11 345556789999998866 99999999999987766544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.66  E-value=1.4e-16  Score=181.29  Aligned_cols=168  Identities=14%  Similarity=0.230  Sum_probs=116.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC----CceEEecCC--Cccc--c--------cCCccceec---cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK----PSIIWKTSE--NKPI--T--------LGSWKDSAV---ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~----p~v~W~k~~--~~~~--~--------~~~~~~~~~---~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.+.+.|.    +.|.|+|++  ..+.  .        ....+....   ...+|.|.+++.+|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (438)
T 1qgc_4            7 SPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADD   86 (438)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcC
Confidence            466788999999999999999876    489999964  2111  0        001111111   12479999999999


Q ss_pred             CceeEEeecCC------------------CCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeeecCCce
Q psy12803        358 MGAYMCLADNV------------------PPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIEHDGVK  417 (902)
Q Consensus       358 sG~YtC~A~N~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~~~~~~  417 (902)
                      +|.|+|.|.|.                  +|.+...+....+.+|+.+.|.|.+.+ .|.+ .|.|++++..+.......
T Consensus        87 ~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  166 (438)
T 1qgc_4           87 VATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  166 (438)
T ss_dssp             CEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE
T ss_pred             CeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceec
Confidence            99999999981                  333333222222346889999999987 6777 899999776653221112


Q ss_pred             EEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        418 YSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       418 ~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      .......++.+...++|.|.+++.+|+|.|+|.|.|..+.......+
T Consensus       167 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  213 (438)
T 1qgc_4          167 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  213 (438)
T ss_dssp             EECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred             cccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccc
Confidence            22233344555667789999999999999999999998876444444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.66  E-value=6.2e-16  Score=162.71  Aligned_cols=154  Identities=16%  Similarity=0.231  Sum_probs=104.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcc----ccc--------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP----ITL--------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~----~~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.+.|+|.....    +..        ...+....   ...+|+|.+++.+|+|.|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTY   89 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEE
Confidence            455678999999999999999999999999954210    000        01111111   122799999999999999


Q ss_pred             EEeecC---------------CC-------------------CEEEEcCceeeeecCceEEEEEEeeccC--CceEEEEe
Q psy12803        362 MCLADN---------------VP-------------------PQILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEF  405 (902)
Q Consensus       362 tC~A~N---------------~~-------------------P~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k  405 (902)
                      +|.|.|               .+                   +.+...+..+.+.+|++++|.|.+.+.|  .+.+.|++
T Consensus        90 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k  169 (250)
T 3esu_F           90 FCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVK  169 (250)
T ss_dssp             EEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEE
T ss_pred             EEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEE
Confidence            999987               11                   1122234456788999999999999877  78999998


Q ss_pred             c--CCeeeec---------------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        406 I--DGTLIEH---------------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       406 ~--~~~l~~~---------------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      +  +..+...               ...++.+.....   ....+|.|.+++.+|+|.|+|.|.|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          170 QRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS---SSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ECCCCCcEEEEEEeccCCccccCccccceEEEEecCC---CCeEEEEECCCCcccCEEEEEEEec
Confidence            7  3322110               012222221111   1134699999999999999999997

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.66  E-value=7.5e-16  Score=182.35  Aligned_cols=174  Identities=17%  Similarity=0.234  Sum_probs=126.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCC---ceEEecCCCcc-----ccc-------CCccceec---cC--CcEEEEeee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKP---SIIWKTSENKP-----ITL-------GSWKDSAV---AS--STLNFTRIN  354 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~~~~~-----~~~-------~~~~~~~~---~~--~sL~I~~Vt  354 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+   .|.|+|++...     +..       ...+....   .+  .+|.|.+++
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            345667889999999999999997654   89999987532     110       01122221   12  369999999


Q ss_pred             eecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCCeeee---cC--
Q psy12803        355 RINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIE---HD--  414 (902)
Q Consensus       355 ~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l~~---~~--  414 (902)
                      .+|+|.|+|.|.|              .+|.+...+..+.+.+|++++|.|.+.+.+ .+.+.|++++.....   ..  
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~  163 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSG  163 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCc
Confidence            9999999999987              566666677788899999999999999654 578999998764211   10  


Q ss_pred             ------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        415 ------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       415 ------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                            ..++.+.....  .....+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++
T Consensus       164 ~~~~~~~~r~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  223 (585)
T 2ocw_A          164 YVNPNYTGRIRLDIQGT--GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE  223 (585)
T ss_pred             ccCccccCcEEEEeccC--CCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC
Confidence                  12222221111  1123469999999999999999999999999999999998654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.65  E-value=3.4e-16  Score=160.10  Aligned_cols=155  Identities=15%  Similarity=0.193  Sum_probs=106.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCC-------CCCceEEecCCCcc-----ccc----------CCccceec-----cCCcE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGH-------PKPSIIWKTSENKP-----ITL----------GSWKDSAV-----ASSTL  348 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~-------P~p~v~W~k~~~~~-----~~~----------~~~~~~~~-----~~~sL  348 (902)
                      ..+..+.+.+|++|+|.|.+.+.       +.+.+.|+|++...     +..          ...+....     .+.+|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            34567889999999999998864       57889999976531     110          01122221     23479


Q ss_pred             EEEeeeeecCceeEEeecCC---------------------CCEEEEcCceeeeecCceEEEEEEeecc----CCceEEE
Q psy12803        349 NFTRINRINMGAYMCLADNV---------------------PPQILIRNRRVGVPIGRTATLECEVEAF----PLSVRYW  403 (902)
Q Consensus       349 ~I~~Vt~~DsG~YtC~A~N~---------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~----P~P~v~W  403 (902)
                      .|.+++.+|+|.|+|.+.+.                     +|.+..   ...+.+|+.++|.|.+.+.    |.|.+.|
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~---~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W  161 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF---LEPLESGRPTRLSCSLPGSCEAGPPLTFSW  161 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec---CccccCCCeEEEEEEeccCCCCCCCceEEE
Confidence            99999999999999999862                     122211   1135689999999999874    8899999


Q ss_pred             EecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEe
Q psy12803        404 EFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGSLILFE  466 (902)
Q Consensus       404 ~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V  466 (902)
                      ++++..+...   .          ....+.|.|..+..+|.|.|+|.|.|..+..  ++++.|.|
T Consensus       162 ~~~~~~~~~~---~----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          162 TGNALSPLDP---E----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             ESSTTSSSCS---S----------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             eCCCCccCCC---C----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            9887543211   0          0123459999999999999999999987543  55555543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.65  E-value=4.1e-16  Score=166.70  Aligned_cols=154  Identities=25%  Similarity=0.315  Sum_probs=116.4

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----------  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----------  367 (902)
                      +..+.+.+|++++|.|.+.+    .+.|++++.....    ........+|.|.+++.+|+|.|+|.|.|          
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   82 (289)
T 3ejj_X           11 GPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT----LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIH   82 (289)
T ss_dssp             SSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE----ECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEE
T ss_pred             CceEEECCCCCEEEEEEeCC----cEEEccCCCceEE----EeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEE
Confidence            45678999999999999988    4999986543211    11223456899999999999999999987          


Q ss_pred             ----CCCE-EEEcCceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 ----VPPQ-ILIRNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ----~~P~-i~~~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                          .+|. +...+..+.+.+|+++.|.|.+.+.|.+. +.|++.++..... ..++....  ..      .|.|.+++.
T Consensus        83 l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~--~~------~L~i~~v~~  153 (289)
T 3ejj_X           83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFSP--WR------GFIIRKAKV  153 (289)
T ss_dssp             EEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT-TCCEEEET--TT------EEEESSCCG
T ss_pred             EEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC-CccEEECC--CC------CEEEeeccc
Confidence                2232 55566778899999999999999987775 9998766665432 23333321  22      399999999


Q ss_pred             CCCeEEEEEEE-eCCceeEEEEEEEeec
Q psy12803        442 SDFDTYRCISK-NEVDIAKGSLILFESN  468 (902)
Q Consensus       442 ~DsG~YtC~A~-N~~G~~~~s~~L~V~~  468 (902)
                      +|+|.|+|.|. |..+..+..+.|.|..
T Consensus       154 ~d~G~Y~C~a~~~~~~~~~~~~~l~V~~  181 (289)
T 3ejj_X          154 LDSNTYVCKTMVNGRESTSTGIWLKVNR  181 (289)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred             ccCEEEEEEEEeCCCccccccEEEEEEE
Confidence            99999999999 5556667888888875

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=2.8e-16  Score=166.84  Aligned_cols=169  Identities=20%  Similarity=0.250  Sum_probs=111.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc--cc-c-----------CCccceec-----cCCcEEEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP--IT-L-----------GSWKDSAV-----ASSTLNFTRI  353 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~--~~-~-----------~~~~~~~~-----~~~sL~I~~V  353 (902)
                      .+..+.+.+|++|+|.|.+.+.|  .+.|.|+|++  ..+  +. .           ...+....     ...+|+|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            34456799999999999999875  7899999863  111  10 0           01122221     1248999999


Q ss_pred             eeecCceeEEeecCCC---------C------EEEE-----------------------cCceeeeecCceEEEEEEeec
Q psy12803        354 NRINMGAYMCLADNVP---------P------QILI-----------------------RNRRVGVPIGRTATLECEVEA  395 (902)
Q Consensus       354 t~~DsG~YtC~A~N~~---------P------~i~~-----------------------~p~~~~v~~G~~v~L~C~a~g  395 (902)
                      +.+|+|.|+|.|.|..         .      .+.+                       .+..+.+.+|++++|.|.+.+
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  165 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ  165 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence            9999999999997731         0      1111                       133456789999999999999


Q ss_pred             cCCceEEEEe--cCCeee--ec-C-------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        396 FPLSVRYWEF--IDGTLI--EH-D-------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       396 ~P~P~v~W~k--~~~~l~--~~-~-------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      .|.+.+.|++  ++..+.  .. .       ..++.+...     ....+|.|.+++.+|+|.|+|.|.|..........
T Consensus       166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~  240 (257)
T 1f3r_B          166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-----GTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTK  240 (257)
T ss_dssp             CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----BTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCE
T ss_pred             cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC-----CCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEE
Confidence            9989999998  343321  10 0       122222111     11346999999999999999999997522223445


Q ss_pred             EEeecCC
Q psy12803        464 LFESNAK  470 (902)
Q Consensus       464 L~V~~~p  470 (902)
                      |.|...+
T Consensus       241 l~V~~~~  247 (257)
T 1f3r_B          241 LELKAAE  247 (257)
T ss_dssp             ECCSSSC
T ss_pred             EEEeCCC
Confidence            6665433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.65  E-value=9.9e-16  Score=162.54  Aligned_cols=167  Identities=20%  Similarity=0.271  Sum_probs=111.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-c--------CCcccee-----ccCCcEEEEeeeeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-L--------GSWKDSA-----VASSTLNFTRINRINM  358 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-~--------~~~~~~~-----~~~~sL~I~~Vt~~Ds  358 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.+.|+|....  +  +. .        ...+...     ....+|+|.+++.+|+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            44568899999999999999999999999984311  1  00 0        0111111     1234799999999999


Q ss_pred             ceeEEeecCC--------------------------------------CCEEEEcCceeeeecCceEEEEEEeeccCCce
Q psy12803        359 GAYMCLADNV--------------------------------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSV  400 (902)
Q Consensus       359 G~YtC~A~N~--------------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~  400 (902)
                      |.|+|.+.|.                                      ++.+...+..+.+.+|++++|.|.+.+. .+.
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~  167 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY  167 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence            9999999771                                      2234445566678899999999999887 679


Q ss_pred             EEEEecCC--ee--eec---C--------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE--EEEE
Q psy12803        401 RYWEFIDG--TL--IEH---D--------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK--GSLI  463 (902)
Q Consensus       401 v~W~k~~~--~l--~~~---~--------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~--~s~~  463 (902)
                      +.|++...  .+  +..   .        ..++.+.....    ...+|.|.+++.+|+|.|+|.|.|..|...  ...+
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~  243 (256)
T 3tf7_C          168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQ----EDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK  243 (256)
T ss_dssp             EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSS----SBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEE
T ss_pred             EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCC----CeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeE
Confidence            99988431  11  100   0        11111111111    134699999999999999999999877542  2334


Q ss_pred             EEeec
Q psy12803        464 LFESN  468 (902)
Q Consensus       464 L~V~~  468 (902)
                      |.|..
T Consensus       244 l~v~~  248 (256)
T 3tf7_C          244 LTVLE  248 (256)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            55543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=165.06  Aligned_cols=159  Identities=13%  Similarity=0.198  Sum_probs=116.5

Q ss_pred             cEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccceecc--CCcEEEEeeeeecCceeEEeecC---C-----
Q psy12803        300 PIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVA--SSTLNFTRINRINMGAYMCLADN---V-----  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~sL~I~~Vt~~DsG~YtC~A~N---~-----  368 (902)
                      .+.|.+|+++.|.|... +.|.+.|.|+|++..+...... .....  ..+|.|.+++.+|+|.|+|.|.|   .     
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRL-EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTE-EEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCE-EEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEE
Confidence            36788999999998876 5899999999987665432221 11122  24899999999999999999998   0     


Q ss_pred             -----------------CCEEEEcCc-eeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCcee
Q psy12803        369 -----------------PPQILIRNR-RVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ  429 (902)
Q Consensus       369 -----------------~P~i~~~p~-~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~  429 (902)
                                       +|.+...+. ...+.+|+++.|.|.+. +.|.+.+.|++++..+.......  +.......  
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~--~~~~~~~~--  164 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYK--MHIDRNTG--  164 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCE--EEEETTTT--
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEE--EEEccCCC--
Confidence                             444444333 67889999999999999 89999999999887765433322  22221111  


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                       ..+|.|.+++.+|+|.|+|.|.|........+.+
T Consensus       165 -~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  198 (312)
T 2y23_A          165 -IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL  198 (312)
T ss_dssp             -EEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEE
T ss_pred             -EEEEEEccCCcccCEeEEEEEEeCCceEEEEEEE
Confidence             3569999999999999999998866555444443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.64  E-value=2.4e-16  Score=167.49  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=107.7

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----------  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----------  367 (902)
                      .....+.+|++++|.|.+.  |.+.++|  ++..+.. .      ...+.|.|..+..+|+|.|+|.|.|          
T Consensus       105 ~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~-~------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s  173 (265)
T 2oz4_A          105 LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP-L------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN  173 (265)
T ss_dssp             ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC-C------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEE
T ss_pred             cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccC-C------CCcEEEEEccccccCCceEEEEEEcCCCCCccccc
Confidence            3456788999999999998  8999999  4544311 1      1235789999999999999999975          


Q ss_pred             --------CCCEEEEc--CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 --------VPPQILIR--NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 --------~~P~i~~~--p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                              .+|.+...  +..+.+.+|++++|.|.+.|.|.|.+.|++++..+..            .+.      |  .
T Consensus       174 ~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~------------~g~------~--~  233 (265)
T 2oz4_A          174 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------------IGE------S--V  233 (265)
T ss_dssp             EEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC------------TTS------C--E
T ss_pred             ccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCC------------CCc------E--E
Confidence                    12222221  3356789999999999999999999999998872211            111      2  2


Q ss_pred             ccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        438 NVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       234 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          234 TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            3788999999999999999999999999875

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.64  E-value=1.2e-15  Score=163.80  Aligned_cols=155  Identities=17%  Similarity=0.239  Sum_probs=106.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc----cccc--------CCccceecc---CCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK----PITL--------GSWKDSAVA---SSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~----~~~~--------~~~~~~~~~---~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.|.|+|++..    .+..        ...+.....   ..+|+|.+++.+|+|.|
T Consensus        18 ~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   97 (276)
T 3auv_A           18 SPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY   97 (276)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEE
Confidence            45668899999999999999999999999986531    1110        011222211   23799999999999999


Q ss_pred             EEeecC---------------CCC--------------EEEEcCceeeeecCceEEEEEEeeccC--CceEEEEecC--C
Q psy12803        362 MCLADN---------------VPP--------------QILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFID--G  408 (902)
Q Consensus       362 tC~A~N---------------~~P--------------~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~  408 (902)
                      +|.|.|               .++              .+...+..+.+.+|++++|.|.+.+.|  .+.+.|++++  .
T Consensus        98 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~  177 (276)
T 3auv_A           98 YCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGK  177 (276)
T ss_dssp             EEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTC
T ss_pred             EEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCC
Confidence            999988               111              112234456788999999999999887  5899999864  1


Q ss_pred             ee--ee-------------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        409 TL--IE-------------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       409 ~l--~~-------------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+  +.             ....++.+.....   ....+|.|.+++.+|+|.|+|.|.|.
T Consensus       178 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          178 CLEWVAGITPAGGYTYYADSVKGRFTISADTS---KNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             CEEEEEEECGGGCCEEECTTTTTTEEEEEEGG---GTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CcEEEEEEeccCCccccccccCCcEEEEecCC---CcEEEEEECCCChhHCEEEEEEEEcC
Confidence            11  10             0112333222110   11246999999999999999999998

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=1.2e-16  Score=166.06  Aligned_cols=164  Identities=14%  Similarity=0.191  Sum_probs=108.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCCC-CC-ceEEecCCC--cc--cc--------cCCccceec---cCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGHP-KP-SIIWKTSEN--KP--IT--------LGSWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P-~p-~v~W~k~~~--~~--~~--------~~~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|.+.+.+ .+ .|.|+|++.  .+  +.        ....+....   .+.+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            5567789999999999999854 34 699998642  11  00        001111111   22489999999999999


Q ss_pred             eEEeecCCC---------------------CEEEEcCceeeeecCceEEEEEEeeccC-C-ceEEEEecCCeeeecCCce
Q psy12803        361 YMCLADNVP---------------------PQILIRNRRVGVPIGRTATLECEVEAFP-L-SVRYWEFIDGTLIEHDGVK  417 (902)
Q Consensus       361 YtC~A~N~~---------------------P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~-P~v~W~k~~~~l~~~~~~~  417 (902)
                      |+|.|.|..                     |.+...+....+.+|+.++|.|.+.+.+ . +.|.|++++..+... ...
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~-~~~  184 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAG-VET  184 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSS-EEE
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCC-ccc
Confidence            999998721                     1111111111223588999999999864 3 389999977655321 110


Q ss_pred             EEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        418 YSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       418 ~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      .......++.+...++|.|.++..+|+|.|+|.|.|.....+.++
T Consensus       185 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          185 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            111122334455667899999999999999999999987755444

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.64  E-value=1.8e-15  Score=156.96  Aligned_cols=159  Identities=16%  Similarity=0.235  Sum_probs=110.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--cc-c------------CCccceecc-----CCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--IT-L------------GSWKDSAVA-----SSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~-~------------~~~~~~~~~-----~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.|.|+|...  .+  +. .            ...+.....     +.+|+|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            44568899999999999998866  67899998542  11  10 0            011222221     23899999


Q ss_pred             eeeecCceeEEeecCCC---------------------CEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEecCC
Q psy12803        353 INRINMGAYMCLADNVP---------------------PQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFIDG  408 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~~---------------------P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~~~  408 (902)
                      ++.+|+|.|.|.+.|..                     |.+...+ ...+.+|+.++|.|.+.+. |.  +.|.|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence            99999999999987621                     2222211 2234578999999999987 76  7999998876


Q ss_pred             eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      .+.......   ....++.+...+.|.|..+..+|.|.|+|.|.|..+...
T Consensus       165 ~~~~~~~~~---~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPP---ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCC---EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecceEecCc---eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            542111111   113445666777899999999999999999999998754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.63  E-value=6.4e-16  Score=162.18  Aligned_cols=161  Identities=17%  Similarity=0.233  Sum_probs=110.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC----------------CcccccC-Cccceec----cCCcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE----------------NKPITLG-SWKDSAV----ASSTLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~----------------~~~~~~~-~~~~~~~----~~~sL~I~~Vt~  355 (902)
                      .+..+.+.+|++|+|.|.+.+.+.+.|.|+|..                ....... ..+....    .+.+|.|.+++.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   86 (246)
T 4dzb_B            7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHP   86 (246)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCG
T ss_pred             CCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCH
Confidence            456688999999999999999999999999821                1111000 0111111    233799999999


Q ss_pred             ecCceeEEeecCC------------------------CCEEEE-cCceeeeecCceEEEEEEeeccCCc--eEEEEecCC
Q psy12803        356 INMGAYMCLADNV------------------------PPQILI-RNRRVGVPIGRTATLECEVEAFPLS--VRYWEFIDG  408 (902)
Q Consensus       356 ~DsG~YtC~A~N~------------------------~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~~  408 (902)
                      +|+|.|+|.+.|.                        +|.+.. .+....+.+|+.++|.|.+.+.|++  .+.|++++.
T Consensus        87 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  166 (246)
T 4dzb_B           87 EDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  166 (246)
T ss_dssp             GGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             HHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCE
Confidence            9999999999851                        222222 2222334569999999999997654  899998776


Q ss_pred             eeeecCCceEEEee------cCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCceeE
Q psy12803        409 TLIEHDGVKYSISD------VDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIAK  459 (902)
Q Consensus       409 ~l~~~~~~~~~~~~------~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~~  459 (902)
                      .+..  ........      ..++.+...+.|.|..+..+| .|.|+|+|.|......
T Consensus       167 ~l~~--~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          167 EVHS--GVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EECT--TEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ECCC--CcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            5532  11111100      135666777889999999888 9999999999866544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.63  E-value=1.8e-15  Score=159.06  Aligned_cols=155  Identities=19%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cc--ccc--------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KP--ITL--------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~--~~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.+.|+|+..  .+  +..        ...+....   ...+|+|.+++.+|+|.|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (242)
T 2znx_A            7 SPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (242)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence            4566889999999999999999999999998542  11  100        01122111   123799999999999999


Q ss_pred             EEeecCC---------------CC-------------EEEEcCceeeeecCceEEEEEEeeccC--CceEEEEecC--Ce
Q psy12803        362 MCLADNV---------------PP-------------QILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFID--GT  409 (902)
Q Consensus       362 tC~A~N~---------------~P-------------~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~~  409 (902)
                      .|.|.|.               ++             .+...+....+.+|++++|.|.+.+.|  .+.+.|++..  ..
T Consensus        87 ~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~  166 (242)
T 2znx_A           87 FCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNR  166 (242)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             EEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCC
Confidence            9999881               11             112222334688999999999999886  4789999853  22


Q ss_pred             ee---e--c---------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        410 LI---E--H---------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       410 l~---~--~---------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      +.   .  .         ...++.+......   ...+|.|.+++.+|+|.|+|.|.|.
T Consensus       167 ~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          167 LEYMGYVSYSGSTYYNPSLKSRISITRDTSK---NQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEEEEECTTSCEEECGGGTTCEEEEEETTT---TEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             cEEEEEEecCCccccCccccCcEEEEecCCC---CEEEEEECCCCcCcCEEEEEeccCC
Confidence            21   0  0         1223333221111   1346999999999999999999984

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.63  E-value=2.4e-15  Score=158.96  Aligned_cols=155  Identities=16%  Similarity=0.244  Sum_probs=103.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC--CCCceEEecCCCc--cc--cc--------CCccceec---cCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSENK--PI--TL--------GSWKDSAV---ASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~--~~--~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG  359 (902)
                      .+..+.+.+|++|+|.|.+.+.  |.+.+.|+|.+..  +.  ..        ...+....   ...+|.|.+++.+|+|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            3445789999999999999986  7889999985321  10  00        00111111   1237999999999999


Q ss_pred             eeEEeecC-----------------CCC---------------------EEEEcCceeeeecCceEEEEEEeeccC--Cc
Q psy12803        360 AYMCLADN-----------------VPP---------------------QILIRNRRVGVPIGRTATLECEVEAFP--LS  399 (902)
Q Consensus       360 ~YtC~A~N-----------------~~P---------------------~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P  399 (902)
                      .|+|.+.|                 .++                     .+. .+....+.+|++++|.|.+.+.|  .+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~  166 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSY  166 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCccccc
Confidence            99999976                 111                     122 22334588999999999999877  78


Q ss_pred             eEEEEecC--Ceee-----ec----------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        400 VRYWEFID--GTLI-----EH----------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       400 ~v~W~k~~--~~l~-----~~----------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .+.|+++.  ..+.     ..          ...++.+......   ...+|.|.+++.+|+|.|+|.|.|..
T Consensus       167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSK---NTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTT---TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCC---CEEEEEECCCChhhCEEEEEEEEcCC
Confidence            99999863  2211     00          0113333322211   13469999999999999999999964

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=3.1e-15  Score=156.15  Aligned_cols=154  Identities=18%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC----CCceEEecCCC--cc--ccc--------CCccceec---cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTSEN--KP--ITL--------GSWKDSAV---ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~--~~--~~~--------~~~~~~~~---~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.+.+.|    .+.|.|+|++.  .+  +..        ...+....   ...+|+|.+++.+|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (240)
T 1moe_A            7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (240)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhh
Confidence            45668899999999999999988    88999999632  11  100        01111111   12279999999999


Q ss_pred             CceeEEeecC---------------C------CCEEEEcCceeeeecCceEEEEEEeeccCC--ceEEEEecC--Ceeee
Q psy12803        358 MGAYMCLADN---------------V------PPQILIRNRRVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTLIE  412 (902)
Q Consensus       358 sG~YtC~A~N---------------~------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l~~  412 (902)
                      +|.|+|.|.|               .      ++.+...+....+.+|++++|.|.+.+.|.  +.+.|+++.  ..+..
T Consensus        87 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~  166 (240)
T 1moe_A           87 VATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEW  166 (240)
T ss_dssp             CEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEE
T ss_pred             CEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEE
Confidence            9999999988               1      112333455567889999999999999874  589999863  22100


Q ss_pred             ----c-----------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        413 ----H-----------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       413 ----~-----------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                          .           ...++.+......   ...+|.|.+++.+|+|.|+|.|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          167 IGRIDPANGNSKYVPKFQGKATITADTSS---NTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEEETTTTEEEECGGGTTTEEEEEETTT---TEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEEcccCCccccCccccccEEEEEcccC---CEEEEEECcCCHHHCEEEEEEEEe
Confidence                0           0112222211111   135699999999999999999985

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.62  E-value=7.4e-16  Score=164.86  Aligned_cols=160  Identities=14%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCc--cceeccCCcEEEEeeeeecCceeEEeecC-----------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--KDSAVASSTLNFTRINRINMGAYMCLADN-----------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~--~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----------  367 (902)
                      ..+.+|++|+|.|.+.+ +.+.+.|+|++..+......  ......+..|.|.+++.+|+|.|+|.+.|           
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S   94 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS   94 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred             CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence            56889999999999986 56789999987654321110  01112346899999999999999999864           


Q ss_pred             -----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEE
Q psy12803        368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       368 -----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                                 .+|.+...+. ..+.+|++|+|.|.+.+.+ +.+.|++++..+....... .   ...+  ....+|.|
T Consensus        95 ~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~-~---~~~~--~~~~~l~I  166 (257)
T 1b6u_A           95 DPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAG-P---KVNG--TFQADFPL  166 (257)
T ss_dssp             CCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCB-C---CSSS--CCBEEEEE
T ss_pred             CCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccc-c---ccCC--ceeEEEEe
Confidence                       1233333333 3578999999999998765 6899999887664321110 0   0000  12346999


Q ss_pred             eccCCCCCeEEEEEEEeCCc-----eeEEEEEEEeecCCC
Q psy12803        437 SNVNISDFDTYRCISKNEVD-----IAKGSLILFESNAKT  471 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G-----~~~~s~~L~V~~~p~  471 (902)
                      .+|+  |+|.|+|.|.|...     ..+..+.|.|...+.
T Consensus       167 ~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          167 GPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             EECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             cccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            9998  99999999997632     224556777776543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.62  E-value=5.5e-16  Score=169.15  Aligned_cols=157  Identities=13%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             EEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce--eccCCcEEEEeeeeecCceeEEeecC------------
Q psy12803        302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS--AVASSTLNFTRINRINMGAYMCLADN------------  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~~~~~sL~I~~Vt~~DsG~YtC~A~N------------  367 (902)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+.........  ......|.|.+++.+|+|.|+|.|.|            
T Consensus       129 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~  207 (316)
T 3vh8_G          129 LVKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSD  207 (316)
T ss_dssp             EEETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCC
T ss_pred             ccCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCC
Confidence            4889999999999965 56789999987765322111111  12345899999999999999999987            


Q ss_pred             ----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 ----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 ----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                                .+|.+...+. ..+.+|++++|.|.+. .|.+.+.|++++..+......  ..  ...+  ....+|.|.
T Consensus       208 ~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~--~~--~~~~--~~~~~L~i~  279 (316)
T 3vh8_G          208 PLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPA--VR--KVNR--TFQADFPLG  279 (316)
T ss_dssp             CEEEEEECSSCCCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEEC--EE--CTTS--CEEEEEECC
T ss_pred             CEEEEecCCCCCCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceec--ee--ccCC--ceeEEEEcC
Confidence                      1233333332 2567899999999997 477899999988765321110  00  1111  123569999


Q ss_pred             ccCCCCCeEEEEEEEeCCce-----eEEEEEEEeecC
Q psy12803        438 NVNISDFDTYRCISKNEVDI-----AKGSLILFESNA  469 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~-----~~~s~~L~V~~~  469 (902)
                      +++  |+|.|+|.|.|..+.     .+..+.|.|...
T Consensus       280 ~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  314 (316)
T 3vh8_G          280 PAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN  314 (316)
T ss_dssp             -------CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred             CcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence            999  999999999997663     345566666544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=159.22  Aligned_cols=157  Identities=16%  Similarity=0.219  Sum_probs=108.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC--CCCceEEecCCCc--cc---ccC------------Cccceec--c---CCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSENK--PI---TLG------------SWKDSAV--A---SSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~--~~---~~~------------~~~~~~~--~---~~sL~I  350 (902)
                      ...+..+++.+|++|+|.|.+.+.  +.+.+.|+|....  +.   ...            ..+....  .   ..+|+|
T Consensus        10 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   89 (256)
T 3juy_B           10 LVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   89 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEE
Confidence            345677899999999999999883  6788999974311  10   000            1122222  1   126999


Q ss_pred             EeeeeecCceeEEeecCC-----------------------------------------CCEEEEcCceeeeecCceEEE
Q psy12803        351 TRINRINMGAYMCLADNV-----------------------------------------PPQILIRNRRVGVPIGRTATL  389 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~-----------------------------------------~P~i~~~p~~~~v~~G~~v~L  389 (902)
                      .+++.+|+|.|.|.+.|.                                         ++.+...+..+.+.+|++|+|
T Consensus        90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L  169 (256)
T 3juy_B           90 RSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATF  169 (256)
T ss_dssp             CSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEE
T ss_pred             CCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEE
Confidence            999999999999999763                                         344555666778899999999


Q ss_pred             EEEeeccCC-ceEEEEecC--Ceee--ec--------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        390 ECEVEAFPL-SVRYWEFID--GTLI--EH--------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       390 ~C~a~g~P~-P~v~W~k~~--~~l~--~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .|.+.+.|. +.+.|++..  ..+.  ..        ...++.+....     ...+|.|.+++.+|+|.|+|.|.|...
T Consensus       170 ~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          170 SCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG-----TDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             EEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             EEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC-----CEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            999999886 899998842  2211  11        11222222111     134699999999999999999998644

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.62  E-value=4.3e-16  Score=177.25  Aligned_cols=166  Identities=15%  Similarity=0.244  Sum_probs=117.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecC--CCcccc---------------cCCccceec-----cCCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTS--ENKPIT---------------LGSWKDSAV-----ASSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~--~~~~~~---------------~~~~~~~~~-----~~~sL~I  350 (902)
                      +..+..+.+.+|++++|.|.+.+.|  .+.|.|+|+  +..+..               ....+....     ...+|.|
T Consensus       222 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  301 (438)
T 1qgc_4          222 LVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQM  301 (438)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEE
Confidence            3345667899999999999999988  679999996  322210               001111111     1238999


Q ss_pred             EeeeeecCceeEEeecC-----------------------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEe
Q psy12803        351 TRINRINMGAYMCLADN-----------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEF  405 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N-----------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k  405 (902)
                      .+++.+|+|.|+|.|.|                       .+|.+...+....+.+|++++|.|.+.+. |.| .|.|++
T Consensus       302 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  381 (438)
T 1qgc_4          302 SSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNS  381 (438)
T ss_dssp             CSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGG
T ss_pred             CCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEec
Confidence            99999999999999996                       12222222222345689999999999997 888 999998


Q ss_pred             cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      ++..+.........    ..+.+...++|.|.++..+| |.|+|.|.|..|.......|.
T Consensus       382 ~g~~~~~~~~~~~~----~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          382 GSLSSGVHTFPAVL----QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             GTCCSSEEECCCEE----ETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CCCCCceeecCccc----cCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence            87665322111111    12456667889999999999 999999999999877666553

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.62  E-value=5e-16  Score=177.69  Aligned_cols=138  Identities=17%  Similarity=0.166  Sum_probs=99.3

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------------
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------------  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------------  367 (902)
                      +..+.+|++++|.|.+.  |.|.++|  ++..+...       ....+|.|.+++.+|+|.|+|.|.|            
T Consensus       292 ~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~  360 (450)
T 1z7z_I          292 KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL-------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT  360 (450)
T ss_dssp             CSEEETTCEEEEEEEC---------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEE
T ss_pred             CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC-------CceEEEEEecCcccCCceEEEEEEcCCCCccccccee
Confidence            45799999999999998  8899999  44433111       1234899999999999999999986            


Q ss_pred             ------CCCEEEEcC--ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        368 ------VPPQILIRN--RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       368 ------~~P~i~~~p--~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                            .+|.+....  .++.+.+|++++|.|.+.|.|.|.|.|++++..+...            +.     .|   ++
T Consensus       361 ~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~------------g~-----~~---~v  420 (450)
T 1z7z_I          361 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------GE-----SV---TV  420 (450)
T ss_dssp             EECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------------TS-----CE---EC
T ss_pred             EEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC------------CC-----eE---eE
Confidence                  233333332  4668899999999999999999999999988743221            11     03   57


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        440 NISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +.+|+|.|+|.|.|.+|..+.++.|.|..
T Consensus       421 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          421 TRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence            88999999999999999999999999875

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.62  E-value=2.5e-15  Score=152.30  Aligned_cols=150  Identities=13%  Similarity=0.050  Sum_probs=105.9

Q ss_pred             CCcEEEEcCCeEEEEEecC--CCCCCceEEec--CCCcccc--------cCCccceeccCCcEEEEeeeeecCceeEEee
Q psy12803        298 SSPIVVREGDNVRLRCVAT--GHPKPSIIWKT--SENKPIT--------LGSWKDSAVASSTLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~--G~P~p~v~W~k--~~~~~~~--------~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A  365 (902)
                      ...+...+|++|+|.|...  +.+.+.|.|+|  ++..+..        ....+.....+++|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            3457889999999999653  35678999999  7654421        1233455557789999999999999999999


Q ss_pred             cCCC-C-----E--EEEc---CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        366 DNVP-P-----Q--ILIR---NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       366 ~N~~-P-----~--i~~~---p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                      .|.. .     .  +.+.   ........+..++|.|.+.+.|.+.+.|++++..+ ...          ..      .|
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~----------~~------~i  148 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHL-KLS----------QR------VI  148 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEE-EEE----------SS------CE
T ss_pred             EeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEEC-CCC----------Cc------EE
Confidence            8811 1     1  1111   11111223457999999999999999999988766 110          11      14


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .+.. ..+|+|.|+|+|.|.++..+++..+.
T Consensus       149 ~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          149 THKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             EEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            4433 57899999999999999988877663

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.62  E-value=1.3e-15  Score=161.14  Aligned_cols=170  Identities=18%  Similarity=0.180  Sum_probs=111.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCC--ccccc--------------CCccceec-----cCCcEEEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSEN--KPITL--------------GSWKDSAV-----ASSTLNFTR  352 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~--~~~~~--------------~~~~~~~~-----~~~sL~I~~  352 (902)
                      ..+.++.+.+|++|+|.|.+.+  .+.+.+.|+|...  .....              ...+....     ...+|+|.+
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            3455677999999999999988  3578999998431  11000              01111111     122699999


Q ss_pred             eeeecCceeEEeecCC--------------------------------CCEEEEcCceeeeecCceEEEEEEeeccCCc-
Q psy12803        353 INRINMGAYMCLADNV--------------------------------PPQILIRNRRVGVPIGRTATLECEVEAFPLS-  399 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~--------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-  399 (902)
                      ++.+|+|.|+|.|.|.                                ++.+...+..+.+.+|++++|.|.+.+.|.+ 
T Consensus        93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  172 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS  172 (257)
T ss_dssp             CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG
T ss_pred             CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce
Confidence            9999999999999771                                1344444556788999999999999999887 


Q ss_pred             eEEEEecC--Ceee--ecC--------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEe
Q psy12803        400 VRYWEFID--GTLI--EHD--------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFE  466 (902)
Q Consensus       400 ~v~W~k~~--~~l~--~~~--------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V  466 (902)
                      .+.|++..  ..+.  ...        ..++......     ...+|.|.+++.+|+|.|+|.|.|...... ...+|.|
T Consensus       173 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v  247 (257)
T 3gkz_A          173 HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSG-----TSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEI  247 (257)
T ss_dssp             GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCC-----CEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEE
Confidence            99999842  2111  100        1122221111     134699999999999999999988644332 2334555


Q ss_pred             ecCC
Q psy12803        467 SNAK  470 (902)
Q Consensus       467 ~~~p  470 (902)
                      ...+
T Consensus       248 ~~~~  251 (257)
T 3gkz_A          248 KRAP  251 (257)
T ss_dssp             CCC-
T ss_pred             EeCC
Confidence            5443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.61  E-value=2.1e-16  Score=173.38  Aligned_cols=159  Identities=16%  Similarity=0.292  Sum_probs=108.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCC-CCC---ceEEecCCCcccccCCccc------eeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGH-PKP---SIIWKTSENKPITLGSWKD------SAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~-P~p---~v~W~k~~~~~~~~~~~~~------~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.+.+|++++|.|.+.+. |.+   .|+|+|+++..+.......      .....++|.|.+++.+|+|.|+|.|.|
T Consensus       120 p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n  199 (323)
T 2wqr_A          120 PSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH  199 (323)
T ss_dssp             CCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             CCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEEC
Confidence            334457789999999999984 566   8999997655443221111      011234799999999999999999998


Q ss_pred             C------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceE-EEeecCCC
Q psy12803        368 V------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKY-SISDVDKG  426 (902)
Q Consensus       368 ~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~-~~~~~~~~  426 (902)
                      .                  +|.+...+.......|+.++|.|.+.+. |.+ .|.|++++..+... .... ......++
T Consensus       200 ~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~-~~~~~~~~~~~~g  278 (323)
T 2wqr_A          200 PHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA-RHSTTQPRKTKGS  278 (323)
T ss_dssp             TTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG-GEEECCCEECSSS
T ss_pred             CCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC-ceeecCcccCCCC
Confidence            1                  1222221111112239999999999984 543 79999987665321 1111 01123344


Q ss_pred             ceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        427 SYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       427 s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .+...++|.|..+..+|+|.|+|.|.|....
T Consensus       279 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          279 GFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            6677888999999999999999999998876

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.61  E-value=5.6e-16  Score=165.89  Aligned_cols=154  Identities=24%  Similarity=0.303  Sum_probs=113.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      .+.++.+.+|++++|.|.+.+.    +.|+++.......    ......++|.|.+++.+|+|.|+|.|.|         
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   81 (292)
T 4dkd_C           10 SVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTL----YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAI   81 (292)
T ss_dssp             CCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCEE----CCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEE
T ss_pred             CCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceEE----eccCceEEEEEcccccccCEEEEEEEccCCCCcceEE
Confidence            3456789999999999999984    8999754321110    1111235899999999999999999998         


Q ss_pred             -----CCCE-EEEcCceeeeecCceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        368 -----VPPQ-ILIRNRRVGVPIGRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       368 -----~~P~-i~~~p~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                           .++. +...+..+.+.+|+.+.|.|.+.+ |.  +.+.|+++++..... ..++...  ....      |.|.++
T Consensus        82 ~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~-~~~~~~~--~~~~------L~i~~~  151 (292)
T 4dkd_C           82 HLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR-HTNYSFS--PWHG------FTIHRA  151 (292)
T ss_dssp             CCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS-SCCEECC--SSSC------CEETTC
T ss_pred             EEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc-CCccccc--CCce------EEECCC
Confidence                 2332 345566788999999999999998 54  789999886554432 2222222  2222      999999


Q ss_pred             CCCCCeEEEEEEEeCCceeE-EEEEEEeec
Q psy12803        440 NISDFDTYRCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      +.+|+|.|+|.|.|..+... ..+.|.|..
T Consensus       152 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          152 KFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             CGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            99999999999999988664 478888876

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.61  E-value=1.6e-15  Score=173.46  Aligned_cols=163  Identities=13%  Similarity=0.133  Sum_probs=119.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC---ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC-----
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP---SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV-----  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~-----  368 (902)
                      .+.+..+.+|++++|.|.+.+.|.+   .|+|+|++..+.....  .....+++|.|.+++.+|+|.|+|.|.|.     
T Consensus        92 ~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  169 (450)
T 1z7z_I           92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG  169 (450)
T ss_dssp             CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             cCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccc--cccccceEEEEEeeccccCceEEEEEEcccCCCC
Confidence            4556789999999999999998888   8999998765533221  11222358999999999999999999971     


Q ss_pred             --------CCEE-EE------cCce---eeeecCceEEEEEEeecc-C--CceEEEEecCCeeeecCCceEEEeecCCCc
Q psy12803        369 --------PPQI-LI------RNRR---VGVPIGRTATLECEVEAF-P--LSVRYWEFIDGTLIEHDGVKYSISDVDKGS  427 (902)
Q Consensus       369 --------~P~i-~~------~p~~---~~v~~G~~v~L~C~a~g~-P--~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s  427 (902)
                              .+.. .+      .+..   ..+.+|+.+.|.|.+.+. |  .+.+.|++++..+..    ++...  .. .
T Consensus       170 ~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~----~~~~~--~~-~  242 (450)
T 1z7z_I          170 LELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYG--ND-S  242 (450)
T ss_dssp             SCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC----EEEEE--TT-E
T ss_pred             ceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc----eEEec--CC-c
Confidence                    1111 11      1222   678899999999999999 7  789999988876533    22221  11 1


Q ss_pred             eeeEeEEEEeccCCCCCe--EEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        428 YQYIMQLNISNVNISDFD--TYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       428 ~~~~stL~I~~V~~~DsG--~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                        ....+.+ +++.+|+|  .|+|.|.|..|....++.|.|...+.
T Consensus       243 --~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~  285 (450)
T 1z7z_I          243 --FSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (450)
T ss_dssp             --EEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             --eeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCC
Confidence              1222333 78999999  99999999999999999999887544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.61  E-value=3.8e-15  Score=154.74  Aligned_cols=163  Identities=15%  Similarity=0.254  Sum_probs=109.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--cc-c------------CCccceecc-----CCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--IT-L------------GSWKDSAVA-----SSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~-~------------~~~~~~~~~-----~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.|.|+|...  .+  +. .            ...+.....     +.+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS   85 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence            34567899999999999998865  47899998542  11  10 0            011222221     24799999


Q ss_pred             eeeecCceeEEeecCCC-----C-------EEEEc-----Ccee-------eeecCceEEEEEEeecc-CCc-eEEEEe-
Q psy12803        353 INRINMGAYMCLADNVP-----P-------QILIR-----NRRV-------GVPIGRTATLECEVEAF-PLS-VRYWEF-  405 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~~-----P-------~i~~~-----p~~~-------~v~~G~~v~L~C~a~g~-P~P-~v~W~k-  405 (902)
                      ++.+|+|.|.|.+.+..     .       .+.+.     +..+       .+.+|+.++|.|.+.+. |.| .|.|++ 
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            99999999999997631     1       11121     0111       23478999999999987 877 999999 


Q ss_pred             cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC--CCCeEEEEEEEeCCceeEEEE
Q psy12803        406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI--SDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~--~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      ++..+..   ..........+.+...+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       166 ~g~~l~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          166 NNSDISS---TRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             TSCBCSC---EEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCCccce---eEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            6655422   11000001124566677899988876  889999999999998876654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.61  E-value=6.7e-15  Score=154.61  Aligned_cols=155  Identities=18%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-----CCceEEecCCC--cc--ccc--------CCccceec---cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-----KPSIIWKTSEN--KP--ITL--------GSWKDSAV---ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-----~p~v~W~k~~~--~~--~~~--------~~~~~~~~---~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.|.+.+.|     .+.+.|+|.+.  .+  +..        ...+....   ...+|+|.+++.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   86 (247)
T 1svz_A            7 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   86 (247)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHH
Confidence            45668899999999999999987     68999998542  11  100        01111111   1237999999999


Q ss_pred             cCceeEEeecCC---------------C-------------CEEEEcCceeeeecCceEEEEEEeeccC--CceEEEEec
Q psy12803        357 NMGAYMCLADNV---------------P-------------PQILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFI  406 (902)
Q Consensus       357 DsG~YtC~A~N~---------------~-------------P~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~  406 (902)
                      |+|.|+|.+.|.               +             +.+...+....+.+|++++|.|.+.+.|  .+.+.|+++
T Consensus        87 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A           87 DLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             HCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence            999999999881               1             1122222334588999999999999885  569999986


Q ss_pred             C--Cee--ee---c----------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        407 D--GTL--IE---H----------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       407 ~--~~l--~~---~----------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .  ..+  +.   .          ...++.+.....   ....+|.|.+++.+|+|.|+|.|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          167 APGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTS---TSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             CTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGG---GTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCCCCcEEEEEEEcCCCccccCccccCcEEEEEecC---CCEEEEEECCCChhHCEEEEEEEecc
Confidence            4  111  00   0          012222221111   11346999999999999999999995

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.61  E-value=3.2e-16  Score=161.05  Aligned_cols=152  Identities=16%  Similarity=0.196  Sum_probs=104.7

Q ss_pred             EEcCCeEEEEEecCCCC----CCceEEecCCCcccccCCc-c-----ceeccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGHP----KPSIIWKTSENKPITLGSW-K-----DSAVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~~~~~~~-~-----~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +.+|++++|.|.+.+.+    .+.|+|+|++..+...... .     ......++|.|.+++.+|+|.|+|.|.|     
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            77999999999999874    3489999988543211100 0     0111224799999999999999999998     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                   .+|.+...+......+|+.++|.|.+.+. |. +.|.|++++..+...  .........++.+...+
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~--~~~~~~~~~~g~~~~~s  172 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENY--KNTQPIMDTDGSYFVYS  172 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE--EECCCEECTTSCEEEEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCc--ccCCceECCCCCEEEEE
Confidence                         12333222222122358999999999985 55 389999987755221  11111224556777888


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .|.|.....+|.|.|+|.|.|...
T Consensus       173 ~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          173 KLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EEEECHHHcCCCCEEEEEEECCCC
Confidence            899988888899999999999864

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=5.6e-15  Score=159.30  Aligned_cols=169  Identities=17%  Similarity=0.221  Sum_probs=113.1

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCCc--cc--c-------------cCCccceec-----cCCcEE
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSENK--PI--T-------------LGSWKDSAV-----ASSTLN  349 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~~--~~--~-------------~~~~~~~~~-----~~~sL~  349 (902)
                      .+..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|.+..  +.  .             ....+....     ...+|+
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            34567778999999999999999875  689999996421  10  0             001122221     124799


Q ss_pred             EEeeeeecCceeEEeecCCC----------------------------------CEEEEcCceeeeecCceEEEEEEeec
Q psy12803        350 FTRINRINMGAYMCLADNVP----------------------------------PQILIRNRRVGVPIGRTATLECEVEA  395 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N~~----------------------------------P~i~~~p~~~~v~~G~~v~L~C~a~g  395 (902)
                      |.+++.+|+|.|+|.+.|..                                  +.+...+..+.+.+|++++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            99999999999999998721                                  11222344566889999999999999


Q ss_pred             cCCceEEEEec--CCeee--ec--------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEE
Q psy12803        396 FPLSVRYWEFI--DGTLI--EH--------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSL  462 (902)
Q Consensus       396 ~P~P~v~W~k~--~~~l~--~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~  462 (902)
                      .| +.+.|++.  +..+.  ..        ...++......     ...+|.|.+++.+|+|.|+|.|.|..... ....
T Consensus       189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  262 (282)
T 1qok_A          189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSG-----TSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGT  262 (282)
T ss_dssp             CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCC-----CEEEEEEccCChhHCEEEEEEEeeCCCceEeCCE
Confidence            99 99999983  43321  10        01223222111     13469999999999999999999864322 2345


Q ss_pred             EEEeec
Q psy12803        463 ILFESN  468 (902)
Q Consensus       463 ~L~V~~  468 (902)
                      .|.|..
T Consensus       263 ~l~V~~  268 (282)
T 1qok_A          263 KLELKR  268 (282)
T ss_dssp             EEEEC-
T ss_pred             EEEEec
Confidence            566654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.60  E-value=2e-15  Score=151.04  Aligned_cols=147  Identities=15%  Similarity=0.092  Sum_probs=100.4

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC----------Ccccee-ccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG----------SWKDSA-VASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~----------~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+.+.+|++|+|.|.+.. |.+.|.|+|++..+....          ..+... ..+++|+|.+++.+|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            467899999999999965 889999999765432111          112222 25679999999999999999999881


Q ss_pred             CC----EEEE--cC-ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        369 PP----QILI--RN-RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       369 ~P----~i~~--~p-~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .-    .+.+  .+ ............|.|.+.+.|.|.+.|++++..+.....                ..|.+.  ..
T Consensus        83 ~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~----------------~~l~~~--~~  144 (171)
T 1ccz_A           83 TDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----------------KTMSYQ--WT  144 (171)
T ss_dssp             CSCEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS----------------SEEEEE--CS
T ss_pred             CCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCCcc----------------eEEEEe--cc
Confidence            10    1111  10 011111222248999999999999999987766542111                114443  37


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .|+|.|+|.|.|.++..+.++.|.
T Consensus       145 ~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          145 NLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             CCSSCEEEEEEETTEEEEEEECCC
T ss_pred             CCCceEEEEEEcccCcccceeEEe
Confidence            899999999999999988776653

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.60  E-value=2.2e-16  Score=163.73  Aligned_cols=153  Identities=18%  Similarity=0.190  Sum_probs=105.7

Q ss_pred             EEcCCeEEEEEecCCC---CC-CceEEecCCCcccccCCcc------ceeccCCcEEEEeeeeecCceeEEeecCC----
Q psy12803        303 VREGDNVRLRCVATGH---PK-PSIIWKTSENKPITLGSWK------DSAVASSTLNFTRINRINMGAYMCLADNV----  368 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~---P~-p~v~W~k~~~~~~~~~~~~------~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~----  368 (902)
                      +.+|++++|.|.+.+.   |. +.|+|+|++..+.......      ......++|.|.+++.+|+|.|+|.|.|.    
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            6799999999999986   43 7999999885542211000      01112347999999999999999999881    


Q ss_pred             --------------CCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        369 --------------PPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       369 --------------~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                    +|.+.+.+......+|+.++|.|.+.| +|.+ .|.|++++..+...  .........++.+...+
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~--~~~~~~~~~~gt~~~~s  180 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENY--KDTAPVLDSDGSYFIYS  180 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE--EECCCEECTTSCEEEEE
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCc--eecccEECCCCCEEEEE
Confidence                          222322222111235899999999998 5766 89999988765321  11112224556677788


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .|.|.....+|.|.|+|.|.|....
T Consensus       181 ~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          181 KLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EEEECHHHcCCCCeEEEEEEcCCCC
Confidence            8988887777899999999998654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.60  E-value=1.9e-15  Score=167.32  Aligned_cols=165  Identities=18%  Similarity=0.254  Sum_probs=112.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCC--CCCceEEecCC--Ccccc---------------cCCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSE--NKPIT---------------LGSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~--~~~~~---------------~~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.  +.+.|.|+|++  ..+..               ....+....     ...+|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            34566889999999999999986  46889999973  22210               001122222     12489999


Q ss_pred             eeeeecCceeEEeecCC------------------CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeee
Q psy12803        352 RINRINMGAYMCLADNV------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLI  411 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~  411 (902)
                      +++.+|+|.|+|.|.|.                  +|.+...+....+.+|+.++|.|.+.+. |. +.|.|++++..+.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  164 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG  164 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence            99999999999999881                  2233322222335689999999999987 65 7999988775431


Q ss_pred             ecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       412 ~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      .......   ....+.+...+.|.|.+++.+| |.|+|.|.|..+.......+
T Consensus       165 ~~~~~~~---~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~  213 (344)
T 1za6_B          165 VHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  213 (344)
T ss_dssp             EEECCCE---ECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEE
T ss_pred             eeECCCe---ECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEee
Confidence            1111111   1233445556789999999888 99999999998876544443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.60  E-value=2.9e-15  Score=159.13  Aligned_cols=145  Identities=14%  Similarity=0.143  Sum_probs=108.0

Q ss_pred             EEEcCCeEEEEEecCC-CCCC--ceEEecCCCcccccCCccceeccCCcEEEEee---eeecCce--eEEeecC------
Q psy12803        302 VVREGDNVRLRCVATG-HPKP--SIIWKTSENKPITLGSWKDSAVASSTLNFTRI---NRINMGA--YMCLADN------  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G-~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~V---t~~DsG~--YtC~A~N------  367 (902)
                      .+.+|++++|.|.+.+ .|.+  .|+|+|++..+..     .....+..|.|..+   +.+|+|.  |+|.|.|      
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~   88 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE   88 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE
Confidence            6889999999999998 8877  9999998765432     23334457777766   7788885  9999998      


Q ss_pred             --------C--CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 --------V--PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 --------~--~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                              .  +|.+.  .....+.+|+.+.|.|.+.  |.+.+.|  ++..+.. ..              ..+.|.|.
T Consensus        89 ~~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~-~~--------------~~~~l~i~  147 (265)
T 2oz4_A           89 TLQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP-LG--------------PRAQLLLK  147 (265)
T ss_dssp             EEEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC-CS--------------SEECCEEE
T ss_pred             EEEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccC-CC--------------CcEEEEEc
Confidence                    2  33333  3345688999999999998  8999999  5544411 11              12348899


Q ss_pred             ccCCCCCeEEEEEEEeCC-ceeE---EEEEEEeecCCCC
Q psy12803        438 NVNISDFDTYRCISKNEV-DIAK---GSLILFESNAKTP  472 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~-G~~~---~s~~L~V~~~p~~  472 (902)
                      .+..+|.|.|+|.|.|.. |...   .++.|.|..+|..
T Consensus       148 ~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~  186 (265)
T 2oz4_A          148 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL  186 (265)
T ss_dssp             CCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEEC
T ss_pred             cccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcc
Confidence            999999999999998644 7665   7788888776654

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.60  E-value=2.2e-15  Score=156.61  Aligned_cols=162  Identities=16%  Similarity=0.209  Sum_probs=109.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc--c-------------cCCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI--T-------------LGSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~--~-------------~~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.|.|+|..  ..+.  .             ....+....     .+.+|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH   84 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEEC
Confidence            345567899999999999999876  7889999864  2111  0             001122222     13489999


Q ss_pred             eeeeecCceeEEeecCCC------C--------EEEEc------Cc------eeeeecCceEEEEEEeecc-CCc-eEEE
Q psy12803        352 RINRINMGAYMCLADNVP------P--------QILIR------NR------RVGVPIGRTATLECEVEAF-PLS-VRYW  403 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~~------P--------~i~~~------p~------~~~v~~G~~v~L~C~a~g~-P~P-~v~W  403 (902)
                      +++.+|+|.|.|.+.|..      .        .+.+.      |.      ...+.+|+.++|.|.+.+. |.| .|.|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  164 (225)
T 1op3_H           85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  164 (225)
T ss_dssp             SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEEC
T ss_pred             CCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEE
Confidence            999999999999998731      1        11111      11      1123579999999999987 777 9999


Q ss_pred             EecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        404 EFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       404 ~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ++++..+........   ...++.+...++|.|.++..+| |.|+|.|.|..+.....
T Consensus       165 ~~~~~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  218 (225)
T 1op3_H          165 NSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  218 (225)
T ss_dssp             CTTSCCTTCEECCCE---ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred             ecCCCcCCeEecCce---eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence            887754211001111   1234456667889999999889 99999999987655433

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.59  E-value=7.9e-15  Score=153.56  Aligned_cols=169  Identities=12%  Similarity=0.204  Sum_probs=108.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--cc-c-----------CCccceecc-----CCcEEEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--IT-L-----------GSWKDSAVA-----SSTLNFTRI  353 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~-~-----------~~~~~~~~~-----~~sL~I~~V  353 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.+.|+|...  .+  +. .           ...+.....     +.+|+|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            44567899999999999998764  67899998541  11  10 0           012222221     228999999


Q ss_pred             eeecCceeEEeec--CC-CC---------EEEEc------Cc------eeeeecC-ceEEEEEEeecc-CCc-eEEEEe-
Q psy12803        354 NRINMGAYMCLAD--NV-PP---------QILIR------NR------RVGVPIG-RTATLECEVEAF-PLS-VRYWEF-  405 (902)
Q Consensus       354 t~~DsG~YtC~A~--N~-~P---------~i~~~------p~------~~~v~~G-~~v~L~C~a~g~-P~P-~v~W~k-  405 (902)
                      +.+|+|.|.|.+.  +. .+         .+.+.      |.      ...+.+| +.++|.|.+.+. |.| .|.|++ 
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~  165 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYK  165 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence            9999999999997  31 01         11221      11      1123467 899999999986 877 999999 


Q ss_pred             cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC--CCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI--SDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~--~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      ++..+..   ..........+.+...++|.|..+..  +|.|.|+|.|.|..+.......|.|..
T Consensus       166 ~g~~l~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          166 NNSDISS---TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             TSCEECC---EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             CCCceee---EEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence            6655532   11000001124566678899999887  889999999999999887777666554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.58  E-value=3.7e-15  Score=155.86  Aligned_cols=159  Identities=18%  Similarity=0.300  Sum_probs=107.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcc-------------cccC--Cccceec----cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP-------------ITLG--SWKDSAV----ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~-------------~~~~--~~~~~~~----~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.+.+ +.+.|.|+|.....             ....  ..+....    .+.+|.|.+++.+|
T Consensus         8 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   86 (240)
T 3q5y_A            8 SPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   86 (240)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhH
Confidence            456688999999999999987 78899999832110             0000  0111111    23479999999999


Q ss_pred             CceeEEeec--C---------------------CCCEEEE-cCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeee
Q psy12803        358 MGAYMCLAD--N---------------------VPPQILI-RNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLI  411 (902)
Q Consensus       358 sG~YtC~A~--N---------------------~~P~i~~-~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~  411 (902)
                      +|.|.|.+.  +                     .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|++++..+.
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~  166 (240)
T 3q5y_A           87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH  166 (240)
T ss_dssp             CEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECc
Confidence            999999996  2                     1222222 222233456899999999998 5666 789998776653


Q ss_pred             ecCCceEE--EeecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCcee
Q psy12803        412 EHDGVKYS--ISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIA  458 (902)
Q Consensus       412 ~~~~~~~~--~~~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~  458 (902)
                      .  .....  .....++.+...+.|.|..+..+| .|.|+|.|.|.....
T Consensus       167 ~--~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          167 S--GVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             T--TEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             C--cEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            2  11110  112234556677889999999999 669999999976543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.58  E-value=1.5e-14  Score=149.56  Aligned_cols=159  Identities=14%  Similarity=0.229  Sum_probs=107.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCCc--ccc---c--------------CCccceec-----cCCcEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSENK--PIT---L--------------GSWKDSAV-----ASSTLNF  350 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~~--~~~---~--------------~~~~~~~~-----~~~sL~I  350 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.+.|+|....  +..   .              ...+....     ...+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            45567899999999999998743  678999974321  100   0              01122221     1226999


Q ss_pred             EeeeeecCceeEEeecCC--------------------CCEEEEcCceeeeecCceEEEEEEeec-cCC--ceEEEEecC
Q psy12803        351 TRINRINMGAYMCLADNV--------------------PPQILIRNRRVGVPIGRTATLECEVEA-FPL--SVRYWEFID  407 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~--------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~--P~v~W~k~~  407 (902)
                      .+++.+|+|.|.|.+.+.                    +|.+........ .+|+.++|.|.+.+ .|.  +.+.|++++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g  164 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESG  164 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCS
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECC
Confidence            999999999999999762                    122221111111 57899999999998 676  489999877


Q ss_pred             CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      ..+.......  ......+.+...++|.|..+..+|+|.|+|.|.|..+..
T Consensus       165 ~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          165 QGVTARNFPP--SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             TTCEEEECCC--EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EECceEEcCc--eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            6653211111  111234556667789999999999999999999988654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.57  E-value=9.8e-15  Score=147.25  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             CcEEEEcCCeEEEEEecCC-CCCCceEEecCC-Ccccc---------c-CC--cccee-ccCCcEEEEeeeeecCceeEE
Q psy12803        299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSE-NKPIT---------L-GS--WKDSA-VASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~-~~~~~---------~-~~--~~~~~-~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      .++.+.+|++|+|.|.+.. .+.+.|.|+|.+ ..+..         . ..  .+... ..+++|.|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4578999999999999865 347899999953 22111         0 11  22233 456789999999999999999


Q ss_pred             eecCCCC-----EEEE--c-CceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        364 LADNVPP-----QILI--R-NRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       364 ~A~N~~P-----~i~~--~-p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                      .+.+...     .+.+  . +.......+.+++|.|.+ .+ |.|.+.|++++..+..          ...      .+|
T Consensus        87 ~v~~~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~----------~~~------~~l  149 (180)
T 2dru_A           87 RMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLRS----------LRQ------KTM  149 (180)
T ss_dssp             EEESSSEEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEEE----------ESS------SEE
T ss_pred             EEEcCCeEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECcC----------CCC------CEE
Confidence            9876220     1111  1 111222356779999999 56 9999999988776531          111      126


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      .+..  .+|+|.|+|.|.|.++..+.+..+
T Consensus       150 ~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          150 SYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEEE--hhcCccEEEEEecCcCccccceeE
Confidence            5633  789999999999999988766544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.57  E-value=4.4e-15  Score=154.71  Aligned_cols=163  Identities=13%  Similarity=0.242  Sum_probs=108.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC----CceEEecCC--Ccc--c-cc-----------CCccceec-----cCCcEEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK----PSIIWKTSE--NKP--I-TL-----------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~----p~v~W~k~~--~~~--~-~~-----------~~~~~~~~-----~~~sL~I~  351 (902)
                      .+..+.+.+|++|+|.|.+.+.|.    +.|.|+|.+  ..+  + ..           ...+....     .+.+|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (228)
T 3bae_H            6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT   85 (228)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred             CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence            345678999999999999998775    889999853  111  0 00           01122221     12589999


Q ss_pred             eeeeecCceeEEeecCCC---------------------------CEEEEcCceeeeecCceEEEEEEeecc-CCc-eEE
Q psy12803        352 RINRINMGAYMCLADNVP---------------------------PQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRY  402 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~~---------------------------P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~  402 (902)
                      +++.+|+|.|.|.+.|..                           |.+........+.+|+.++|.|.+.+. |.| .|.
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEE
Confidence            999999999999987521                           122111111234679999999999987 877 999


Q ss_pred             EEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        403 WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       403 W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      |++++..+......  .+. .. +.+...++|.|..+..+| |.|+|.|.|..+.......+
T Consensus       166 W~~~~~~~~~~~~~--~~~-~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          166 WNSGSLSSGVHTFP--AVL-QS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EGGGTCCTTEEEEE--EEE-ET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EeeCCcccCceEcC--cee-CC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            98877543111111  111 12 455667889999998866 99999999999877655443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.57  E-value=2.6e-14  Score=155.03  Aligned_cols=170  Identities=16%  Similarity=0.229  Sum_probs=112.2

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--cc-------------cCCccceec-----cCCcEE
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--IT-------------LGSWKDSAV-----ASSTLN  349 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~-------------~~~~~~~~~-----~~~sL~  349 (902)
                      .+..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|...  .+  +.             ....+....     ...+|+
T Consensus        25 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  104 (291)
T 2gki_A           25 QLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYME  104 (291)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred             EEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence            34456678999999999999998876  57899999642  11  00             001122221     134799


Q ss_pred             EEeeeeecCceeEEeecCCC-----------------------------------CEEEEcCceeeeecCceEEEEEEee
Q psy12803        350 FTRINRINMGAYMCLADNVP-----------------------------------PQILIRNRRVGVPIGRTATLECEVE  394 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N~~-----------------------------------P~i~~~p~~~~v~~G~~v~L~C~a~  394 (902)
                      |.+++.+|+|.|.|.+.|..                                   +.+...+..+.+.+|++++|.|.+.
T Consensus       105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  184 (291)
T 2gki_A          105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSS  184 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEES
T ss_pred             ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcC
Confidence            99999999999999997721                                   1122223456788999999999999


Q ss_pred             ccCCc------eEEEEecC--Ce--eeecC--------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        395 AFPLS------VRYWEFID--GT--LIEHD--------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       395 g~P~P------~v~W~k~~--~~--l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      +.|.+      .+.|+++.  ..  .+...        ..++......     ...+|.|.+++.+|+|.|+|.|.|...
T Consensus       185 ~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~a~~~~~  259 (291)
T 2gki_A          185 QSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG-----TDFTLTISSVQAEDLAVYYCKQSYYHM  259 (291)
T ss_dssp             SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecC-----CEEEEEECCCCHHHCEEEEEEEccCCc
Confidence            98876      89999863  21  11111        1222222111     134699999999999999999999654


Q ss_pred             eeE-EEEEEEeec
Q psy12803        457 IAK-GSLILFESN  468 (902)
Q Consensus       457 ~~~-~s~~L~V~~  468 (902)
                      ... ....|.|..
T Consensus       260 ~~fg~gt~l~v~~  272 (291)
T 2gki_A          260 YTFGSGTKLEIKH  272 (291)
T ss_dssp             EEECCCEEEEEEC
T ss_pred             eEEcCCEEEEEEe
Confidence            332 223455544

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.57  E-value=2.5e-14  Score=152.90  Aligned_cols=155  Identities=14%  Similarity=0.278  Sum_probs=104.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC------CCceEEecCC--Cccc--cc--------CCccceec---cCCcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP------KPSIIWKTSE--NKPI--TL--------GSWKDSAV---ASSTLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P------~p~v~W~k~~--~~~~--~~--------~~~~~~~~---~~~sL~I~~Vt~  355 (902)
                      .+..+.+.+|++|+|.|.+.+.|      .+.|.|+|.+  ..+.  ..        ...+....   ...+|+|.+++.
T Consensus        11 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~   90 (264)
T 2gjj_A           11 TPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKA   90 (264)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCH
Confidence            45668899999999999999987      6899999853  2111  00        01122221   124899999999


Q ss_pred             ecCceeEEeecCC---------------CC------------------EE-EEcCceeeeecCceEEEEEEeeccCC--c
Q psy12803        356 INMGAYMCLADNV---------------PP------------------QI-LIRNRRVGVPIGRTATLECEVEAFPL--S  399 (902)
Q Consensus       356 ~DsG~YtC~A~N~---------------~P------------------~i-~~~p~~~~v~~G~~v~L~C~a~g~P~--P  399 (902)
                      +|+|.|.|.+.|.               ++                  .+ ...+....+.+|++|+|.|.+.+.|.  +
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  170 (264)
T 2gjj_A           91 EDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGY  170 (264)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             HHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCe
Confidence            9999999999871               11                  11 11222346889999999999998874  7


Q ss_pred             eEEEEecC--Ce--eee---cC----------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        400 VRYWEFID--GT--LIE---HD----------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       400 ~v~W~k~~--~~--l~~---~~----------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+.|+++.  ..  ++.   ..          ..++.+......   ...+|.|.+++.+|+|.|+|.|.|.
T Consensus       171 ~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          171 FINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSS---STAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTT---TEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCC---CEEEEEECcCCcccCEEEEEEEecC
Confidence            99999874  11  111   00          112222211111   1356999999999999999999995

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.57  E-value=4.8e-15  Score=157.17  Aligned_cols=155  Identities=15%  Similarity=0.272  Sum_probs=99.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc--cc-cC--C----------ccce-----eccCCcEEEEeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP--IT-LG--S----------WKDS-----AVASSTLNFTRIN  354 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~--~~-~~--~----------~~~~-----~~~~~sL~I~~Vt  354 (902)
                      .+.++.+.+|++|+|.|.+.+.+.+.+.|+|..  ..+  +. ..  .          .+..     .....+|.|.+++
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   87 (259)
T 3omz_A            8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI   87 (259)
T ss_dssp             ---CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC
T ss_pred             CCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC
Confidence            345688999999999999999888999999832  111  00 00  0          0111     1123479999999


Q ss_pred             eecCceeEEeecCC----------------------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc
Q psy12803        355 RINMGAYMCLADNV----------------------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS  399 (902)
Q Consensus       355 ~~DsG~YtC~A~N~----------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P  399 (902)
                      .+|+|.|.|.+.|.                                  .+.+...+..+.+.+|++|+|.|.+.+. |.+
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  167 (259)
T 3omz_A           88 ENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSY  167 (259)
T ss_dssp             GGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSC
T ss_pred             cccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCc
Confidence            99999999999861                                  2344555666789999999999999875 788


Q ss_pred             eEEEEecCC--ee--eec--------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        400 VRYWEFIDG--TL--IEH--------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       400 ~v~W~k~~~--~l--~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+.|++...  .+  +..        ...++.+.....   ....+|.|.+++.+|+|.|+|.|.+.
T Consensus       168 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          168 YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKA---AKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGG---GTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             eEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCc---CCEEEEEECCCChhHCEEEEEEEeCc
Confidence            999998542  11  100        011222221111   11234999999999999999999853

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.56  E-value=7.9e-15  Score=155.54  Aligned_cols=166  Identities=16%  Similarity=0.241  Sum_probs=109.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCc--c--c-c------------cCCccceec-----cCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENK--P--I-T------------LGSWKDSAV-----ASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~--~--~-~------------~~~~~~~~~-----~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+  .+...+.|+|....  .  + .            ....+....     .+.+|+|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            455678999999999999976  33678999985321  1  1 0            001122221     123599999


Q ss_pred             eeeecCceeEEeecCC----------------------CCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCC
Q psy12803        353 INRINMGAYMCLADNV----------------------PPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDG  408 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~----------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~  408 (902)
                      ++.+|+|.|.|.+.|.                      +|.+........+.+|+.++|.|.+.+ .|.+ .+.|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            9999999999999762                      222222222233557999999999998 6777 899988775


Q ss_pred             eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      .+........  . .. +.+...++|.|..+..+| |.|+|.|.|..+.......|.+.
T Consensus       166 ~~~~~~~~~~--~-~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          166 SSGVHTFPAV--L-QS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CTTEEECCCE--E-ET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ecceEeCCcc--c-cC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            3211111111  1 11 456667889999999999 99999999999887777766654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.56  E-value=2.5e-14  Score=174.48  Aligned_cols=173  Identities=14%  Similarity=0.193  Sum_probs=121.0

Q ss_pred             CCcEEEEcC--CeEEEEEecCCCCCCceEEecC--CCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803        298 SSPIVVREG--DNVRLRCVATGHPKPSIIWKTS--ENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------  367 (902)
Q Consensus       298 ~~~v~v~eG--e~v~L~C~a~G~P~p~v~W~k~--~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------  367 (902)
                      +..+.+.+|  ++++|.|.+.+ |.+.|.|+|+  +..+..... .........|.|.+++.+|+|.|+|.+.+      
T Consensus       133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  210 (772)
T 3v2a_R          133 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN-RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ  210 (772)
T ss_dssp             EEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSS-SCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEE
T ss_pred             ceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCc-eeecCCCCCeEecCCChhhCeEEEEEEEECCceEE
Confidence            345778899  99999999987 8889999996  544433222 22334556899999999999999999976      


Q ss_pred             -----------CCCEEEEcC-ceeeeecCceEEEEEEeecc--CCceEEEEecCCeeeecCCceEEEe-ecCCCceeeEe
Q psy12803        368 -----------VPPQILIRN-RRVGVPIGRTATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSIS-DVDKGSYQYIM  432 (902)
Q Consensus       368 -----------~~P~i~~~p-~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~~l~~~~~~~~~~~-~~~~~s~~~~s  432 (902)
                                 ..+.+...+ ..+.+.+|++++|.|.+.+.  |.+.+.|++++..+........... ..........+
T Consensus       211 s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (772)
T 3v2a_R          211 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS  290 (772)
T ss_dssp             CCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEE
T ss_pred             EEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEE
Confidence                       122233333 33678999999999999984  5668999988776533211111000 00012334567


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.+++.+|+|.|+|.|.|..+..+..+.|.|..+|..
T Consensus       291 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~  330 (772)
T 3v2a_R          291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV  330 (772)
T ss_dssp             EEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-
T ss_pred             EEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCee
Confidence            8999999999999999999999999999999999876654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=152.10  Aligned_cols=155  Identities=19%  Similarity=0.312  Sum_probs=103.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-----CCceEEecCCC-c-c--ccc--------CCccceec---cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-----KPSIIWKTSEN-K-P--ITL--------GSWKDSAV---ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-----~p~v~W~k~~~-~-~--~~~--------~~~~~~~~---~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.|.+.+.+     .+.+.|+|.+. . +  +..        ...+....   ...+|+|.+++.+
T Consensus        21 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  100 (268)
T 1x9q_A           21 TPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAE  100 (268)
T ss_dssp             ECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChh
Confidence            35567889999999999999877     58999998642 1 1  100        01122221   2237999999999


Q ss_pred             cCceeEEeecCC---------------C-----C------------------EEEEcCceeeeecCceEEEEEEeeccCC
Q psy12803        357 NMGAYMCLADNV---------------P-----P------------------QILIRNRRVGVPIGRTATLECEVEAFPL  398 (902)
Q Consensus       357 DsG~YtC~A~N~---------------~-----P------------------~i~~~p~~~~v~~G~~v~L~C~a~g~P~  398 (902)
                      |+|.|.|.+.|.               .     |                  .+...+....+.+|++++|.|.+.+.|.
T Consensus       101 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~  180 (268)
T 1x9q_A          101 DLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTF  180 (268)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCG
T ss_pred             HCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccc
Confidence            999999999871               0     0                  0112233567889999999999998864


Q ss_pred             --ceEEEEecC--Cee--ee---------------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        399 --SVRYWEFID--GTL--IE---------------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       399 --P~v~W~k~~--~~l--~~---------------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                        +.+.|++..  ..+  +.               ....++.+.....   ....+|.|.+++.+|+|.|+|.|.|.
T Consensus       181 ~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          181 GHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDS---KSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             GGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGG---GTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCC---CCEEEEEECCCCHHHCEEEEEEEccC
Confidence              789998853  221  10               0112222221110   01356999999999999999999985

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.56  E-value=1.4e-14  Score=155.09  Aligned_cols=164  Identities=14%  Similarity=0.191  Sum_probs=109.1

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cccc---c------------CCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPIT---L------------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~~---~------------~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.|.|+|...  .+..   .            ...+....     .+.+|+|.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            345567899999999999999876  68899998642  1110   0            01122221     23489999


Q ss_pred             eeeeecCceeEEeecCC---------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCC
Q psy12803        352 RINRINMGAYMCLADNV---------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDG  408 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~---------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~  408 (902)
                      +|+.+|+|.|.|.+.|.                     +|.+........+.+|+.++|.|.+.+. |.+ .|.|++++.
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            99999999999999872                     1222221111234579999999999985 776 999998876


Q ss_pred             eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      .+.........   .. +.+...++|.|..+..+| |.|+|.|.|..........+
T Consensus       171 ~~~~~~~~~~~---~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~  221 (261)
T 2xqy_G          171 SSGVHTFPAVL---QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  221 (261)
T ss_dssp             CTTEEECCCEE---ET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cCceEecCcee---cC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEe
Confidence            53211111111   12 455667889999998888 99999999977655444333

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.55  E-value=2.7e-15  Score=157.12  Aligned_cols=160  Identities=14%  Similarity=0.206  Sum_probs=106.5

Q ss_pred             CCcEEEEcCCeEEEEEecCC-CCC-C-ceEEecCCCcccccCCccceecc------CCcEEEEeeeeecCceeEEeecCC
Q psy12803        298 SSPIVVREGDNVRLRCVATG-HPK-P-SIIWKTSENKPITLGSWKDSAVA------SSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G-~P~-p-~v~W~k~~~~~~~~~~~~~~~~~------~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +..+.+.+|++++|.|.+.+ .|. | .|+|+|++..++...........      ..+|.|.+++.+|+|.|+|.|.|.
T Consensus        20 p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~   99 (231)
T 2w59_A           20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHE   99 (231)
T ss_dssp             CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             cChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcC
Confidence            44455679999999999998 474 4 99999977665111111111111      236999999999999999999981


Q ss_pred             ------------------CCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeec-----
Q psy12803        369 ------------------PPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDV-----  423 (902)
Q Consensus       369 ------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~-----  423 (902)
                                        +|.+.+.........+..++|.|.+.++ | .+.|.|++++..+.............     
T Consensus       100 ~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~  179 (231)
T 2w59_A          100 ELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTAN  179 (231)
T ss_dssp             TCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSC
T ss_pred             CCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCccccc
Confidence                              2222221111111235679999999986 4 36899999877664322111101111     


Q ss_pred             ---CC-CceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        424 ---DK-GSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       424 ---~~-~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                         .+ +.+...+.|.|.....+|.|.|+|+|.|....
T Consensus       180 ~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          180 GAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             C---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence               34 66777889999999999999999999998754

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.55  E-value=2.8e-14  Score=149.46  Aligned_cols=159  Identities=18%  Similarity=0.240  Sum_probs=106.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--C-----------cccccCC---ccceec----cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--N-----------KPITLGS---WKDSAV----ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~-----------~~~~~~~---~~~~~~----~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.| ..+.+.+.|.|+|..  .           .......   .+....    .+.+|.|.+++.+
T Consensus         8 ~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   86 (245)
T 4ei6_B            8 IPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE   86 (245)
T ss_dssp             ECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG
T ss_pred             CCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh
Confidence            45668899999999999 667788999999821  1           1000110   122222    1238999999999


Q ss_pred             cCceeEEeecC------------------------CCCEEEE-cCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCe
Q psy12803        357 NMGAYMCLADN------------------------VPPQILI-RNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGT  409 (902)
Q Consensus       357 DsG~YtC~A~N------------------------~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~  409 (902)
                      |+|.|.|.+.+                        .+|.+.. .+....+.+|+.++|.|.+.+. |.+ .+.|++++..
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~  166 (245)
T 4ei6_B           87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (245)
T ss_dssp             GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEE
Confidence            99999999983                        0222221 2222334568999999999984 545 8999987665


Q ss_pred             eeecCCceEEEee------cCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCcee
Q psy12803        410 LIEHDGVKYSISD------VDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIA  458 (902)
Q Consensus       410 l~~~~~~~~~~~~------~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~  458 (902)
                      +..  ........      ..++.+...+.|.|.....+| .|.|+|.|.|.....
T Consensus       167 l~~--~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          167 VHS--GVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             ECT--TEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CCC--CcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence            532  11111100      135567777889999998888 999999999976543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.55  E-value=3.9e-14  Score=146.71  Aligned_cols=151  Identities=13%  Similarity=0.170  Sum_probs=106.2

Q ss_pred             EEEEcCCeEEEEEecCCCCCC--ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-----------
Q psy12803        301 IVVREGDNVRLRCVATGHPKP--SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN-----------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----------  367 (902)
                      +.|.+|++++|.|.+ +.|.|  .|.|++.+..+   . ..........|.|.+|+.+|+|.|.|.|.|           
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---G-AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---C-CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---C-cEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEE
Confidence            689999999999999 88888  99999965443   1 111223346899999999999999999998           


Q ss_pred             ---CCCEEEE-cCceeeeecCceEEEEEEeecc-CC----ceEEEEecCCeeeecCC-c-eEE-----EeecCCCceeeE
Q psy12803        368 ---VPPQILI-RNRRVGVPIGRTATLECEVEAF-PL----SVRYWEFIDGTLIEHDG-V-KYS-----ISDVDKGSYQYI  431 (902)
Q Consensus       368 ---~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~----P~v~W~k~~~~l~~~~~-~-~~~-----~~~~~~~s~~~~  431 (902)
                         .+|.... .+  ..+..|+.+ |+|.+.+. |.    ++|.|++++..+..... . ...     ........+..+
T Consensus        92 tV~~~P~~~~i~~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt  168 (210)
T 1gsm_A           92 LVYAFPNQLTVSP--AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT  168 (210)
T ss_dssp             EEEBCCSEEEEES--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred             EEEecCCCcEEcc--ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE
Confidence               2232222 22  145578888 99999985 74    58999998877632111 0 110     011233467778


Q ss_pred             eEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        432 MQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      ++|.+......|.+.|+|.|.+.+-...
T Consensus       169 s~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          169 ERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             EEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             EEEeecCCcccCCceEEEEEEeeCCCCc
Confidence            8899887777777899999999875443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.55  E-value=2.3e-14  Score=147.89  Aligned_cols=160  Identities=17%  Similarity=0.249  Sum_probs=103.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--ccc--c-c-----------CCccceec-----cCCcEEEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPI--T-L-----------GSWKDSAV-----ASSTLNFTRI  353 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~--~-~-----------~~~~~~~~-----~~~sL~I~~V  353 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.|.|+|.+.  .+.  . .           ...+....     .+.+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            35567899999999999999864  57899998641  110  0 0           01122221     1238999999


Q ss_pred             eeecCceeEEeecCC---------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCee
Q psy12803        354 NRINMGAYMCLADNV---------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTL  410 (902)
Q Consensus       354 t~~DsG~YtC~A~N~---------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l  410 (902)
                      +.+|+|.|.|.+.|.                     +|.+...+....+.+|+.++|.|.+.+. |.| .|.|++++..+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            999999999999872                     1122211111224579999999999987 888 99998887543


Q ss_pred             eecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        411 IEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       411 ~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      ........  . .. +.+...++|.  ....+| |.|+|.|.|..+.......
T Consensus       166 ~~~~~~~~--~-~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~  211 (215)
T 1c5d_H          166 DVHTFPAV--L-QS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKK  211 (215)
T ss_dssp             SCCBCCCE--E-ET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             ceEecCcc--c-CC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEe
Confidence            21111111  1 11 4444455566  444456 9999999999987654443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.54  E-value=5.1e-15  Score=158.59  Aligned_cols=185  Identities=14%  Similarity=0.192  Sum_probs=112.2

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-c---CCcEEEEeeeeecCceeEEeecCCC-----
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-A---SSTLNFTRINRINMGAYMCLADNVP-----  369 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~---~~sL~I~~Vt~~DsG~YtC~A~N~~-----  369 (902)
                      .++++.+|++++|.|.+.+.    |+|+|++..+..    +.... .   .++|.|.+++.+|+|.|+|.|.|..     
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (289)
T 3mjg_X            8 PELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ----EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETD   79 (289)
T ss_dssp             SEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE----EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------C
T ss_pred             CeEEEeCCCcEEEEEeccce----EEEECCCCCccc----ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcC
Confidence            45778999999999999984    999998766521    11111 1   2589999999999999999999811     


Q ss_pred             --CEEEE--c-Cc--------e---eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        370 --PQILI--R-NR--------R---VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       370 --P~i~~--~-p~--------~---~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                        ..+.+  . +.        .   +.+.+|+++.|.|.+. .|.|.+.|++.+......  ..+   .... .      
T Consensus        80 ~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~--~~~---~~~~-~------  146 (289)
T 3mjg_X           80 ERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP--VPY---DHQR-G------  146 (289)
T ss_dssp             CCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC--CCE---ETTT-E------
T ss_pred             cEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc--eee---cCCc-C------
Confidence              11111  1 10        1   5588999999999998 788899998765222111  000   0111 0      


Q ss_pred             EEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEeecCCCCCCCCCCcceEEEEeCCCCCCccccCCCCcccCCCCC
Q psy12803        434 LNISNVNISDFDTYRCISKNEVDIAK-GSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPCS  508 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~C~~~~v~~~cp  508 (902)
                      +.    ..+|+|.|+|.|.|..+... ..+.|.|....++.............+....+.|....-+.+.+.|...
T Consensus       147 ~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~  218 (289)
T 3mjg_X          147 FS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP  218 (289)
T ss_dssp             EE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECT
T ss_pred             ee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcC
Confidence            11    35799999999999887654 3456666653121111111112233333345555444444445555543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.53  E-value=2.5e-14  Score=152.27  Aligned_cols=159  Identities=21%  Similarity=0.307  Sum_probs=108.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc-----------cC--C-ccceec----cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT-----------LG--S-WKDSAV----ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~-----------~~--~-~~~~~~----~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.|.+. .+.+.|.|+|..  ..+..           ..  . .+....    .+.+|.|.+++.+
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG  110 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG
T ss_pred             CCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc
Confidence            45568899999999999987 478899999832  11100           00  0 122222    1457999999999


Q ss_pred             cCceeEEeecC----------------C------CCEEEE-cCceeeeecCceEEEEEEeeccCCc--eEEEEecCCeee
Q psy12803        357 NMGAYMCLADN----------------V------PPQILI-RNRRVGVPIGRTATLECEVEAFPLS--VRYWEFIDGTLI  411 (902)
Q Consensus       357 DsG~YtC~A~N----------------~------~P~i~~-~p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~~~l~  411 (902)
                      |+|.|+|.+.|                .      +|.+.. .+....+.+|+.++|.|.+.+.+++  .+.|++++..+.
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEEC
T ss_pred             cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECC
Confidence            99999999985                0      233222 2222334568999999999986554  899999877663


Q ss_pred             ecCCceEE------EeecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCcee
Q psy12803        412 EHDGVKYS------ISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIA  458 (902)
Q Consensus       412 ~~~~~~~~------~~~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~  458 (902)
                      .  .....      .....++.+...+.|.|.....+| .|.|+|.|.|.....
T Consensus       191 ~--~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          191 S--GVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             T--TEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             C--CeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            2  11111      011245566777889999998888 999999999986543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.53  E-value=2.4e-14  Score=154.31  Aligned_cols=165  Identities=16%  Similarity=0.197  Sum_probs=107.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCC--CCCceEEecCCCcc-----cccC------------Cccceecc-----CCcEEEEee
Q psy12803        298 SSPIVVREGDNVRLRCVATGH--PKPSIIWKTSENKP-----ITLG------------SWKDSAVA-----SSTLNFTRI  353 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~~-----~~~~------------~~~~~~~~-----~~sL~I~~V  353 (902)
                      +..+.+.+|++|+|.|.+.+.  +.+.+.|+|.....     +...            ..+.....     ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            566789999999999999875  66889999853110     0000            01222221     137999999


Q ss_pred             eeecCceeEEeecCC--------------------------------------CCEEEEcCceeeeecCceEEEEEEeec
Q psy12803        354 NRINMGAYMCLADNV--------------------------------------PPQILIRNRRVGVPIGRTATLECEVEA  395 (902)
Q Consensus       354 t~~DsG~YtC~A~N~--------------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g  395 (902)
                      +.+|+|.|.|.+.|.                                      ++.+...+. +.+.+|++|+|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            999999999999763                                      112222233 67889999999999998


Q ss_pred             -cC-CceEEEEecC--Ceeee--c--------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce---e
Q psy12803        396 -FP-LSVRYWEFID--GTLIE--H--------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI---A  458 (902)
Q Consensus       396 -~P-~P~v~W~k~~--~~l~~--~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~---~  458 (902)
                       .+ .+.+.|++..  ..+..  .        ...++.+....     ...+|.|.+++.+|+|.|+|.|.|..+.   .
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~  240 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSG-----NTASLTITGLQPEDEADYYCSTWDSSLSAVVF  240 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEET-----TEEEEEECSCCGGGCSEEEEEEEETTTTEEEE
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCCHHHCEEEEEEEecCCCCceEE
Confidence             44 4789998743  11110  0        01223322211     1345999999999999999999997622   1


Q ss_pred             EEEEEEEeec
Q psy12803        459 KGSLILFESN  468 (902)
Q Consensus       459 ~~s~~L~V~~  468 (902)
                      .....|.|..
T Consensus       241 g~~t~l~V~~  250 (280)
T 3fku_X          241 GGGTKLTVLG  250 (280)
T ss_dssp             BCCCEEEEC-
T ss_pred             CCCEEEEECC
Confidence            2334566654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.53  E-value=8.1e-15  Score=150.33  Aligned_cols=151  Identities=15%  Similarity=0.163  Sum_probs=98.9

Q ss_pred             EcCCeEEEEEecCCCC----CCceEEecCCCcccccCCccceeccCCcEEEEe---eeeec---CceeEEeecCC-----
Q psy12803        304 REGDNVRLRCVATGHP----KPSIIWKTSENKPITLGSWKDSAVASSTLNFTR---INRIN---MGAYMCLADNV-----  368 (902)
Q Consensus       304 ~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~---Vt~~D---sG~YtC~A~N~-----  368 (902)
                      .+|++++|.|.+.+.+    .+.|+|+|++..+............++.|.|..   ++.+|   +|.|+|.|.|.     
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999999864    349999998755432211112223345666543   33555   99999999981     


Q ss_pred             -------------CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803        369 -------------PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       369 -------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st  433 (902)
                                   +|.+.+.+.......|..++|.|.+.+. |. +.|.|++++..+...  .........++.+...+.
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~--~~~~~~~~~~gt~~~~s~  173 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY--KTTPPVLDSDGSFFLYSK  173 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE--EECCCEECTTSCEEEEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCc--cccCceECCCCCEEEEEE
Confidence                         1222221111111246679999999985 54 389999987665321  111122245567777888


Q ss_pred             EEEeccCCCCCeEEEEEEEeCCc
Q psy12803        434 LNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      |.|.....+|.|.|+|.|.|...
T Consensus       174 l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          174 LTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEECHHHcCCCCEEEEEEEcCCc
Confidence            99988877889999999999864

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.52  E-value=4.4e-14  Score=128.60  Aligned_cols=95  Identities=18%  Similarity=0.293  Sum_probs=81.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      ||.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+......++.+.....     .++|.|.+++.+|+|.|+
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD-----LTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSS-----EEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccc-----eEEEEEcCCCccCCEEEE
Confidence            678888888999999999999999999999999999988777655555555544332     346999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeec
Q psy12803        449 CISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|.|..|.++.++.|.|..
T Consensus        80 C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           80 LSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEEE
Confidence            99999999999999999864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.52  E-value=5e-15  Score=156.38  Aligned_cols=153  Identities=16%  Similarity=0.209  Sum_probs=105.2

Q ss_pred             EEcCCeEEEEEecCCC---CCC-ceEEecCCCcccccCCccc------eeccCCcEEEEeeeeecCceeEEeecCC----
Q psy12803        303 VREGDNVRLRCVATGH---PKP-SIIWKTSENKPITLGSWKD------SAVASSTLNFTRINRINMGAYMCLADNV----  368 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~---P~p-~v~W~k~~~~~~~~~~~~~------~~~~~~sL~I~~Vt~~DsG~YtC~A~N~----  368 (902)
                      +.+|++++|.|.+.+.   |.+ .|+|+|++..+........      ......+|.|.+++.+|+|.|+|.|.|.    
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            5789999999999986   766 8999998865432110000      1112347999999999999999999981    


Q ss_pred             --------------CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        369 --------------PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       369 --------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                    +|.+.+.+.......|+.++|.|.+.+. |. ..|.|++++..+...  .........++.+...+
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~--~~~~~~~~~dgt~~~~s  186 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY--KNTPPTMDTDGSYFLYS  186 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE--EECCCEECTTSCEEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCc--eecCceECCCCCEEEEE
Confidence                          2333322222222357889999999984 55 389999887655221  11111224556777888


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .|.|.....+|.|.|+|.|.|....
T Consensus       187 ~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          187 KLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEChhhcCCCCEEEEEEECCCCC
Confidence            8988877777899999999998654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.51  E-value=3.7e-14  Score=168.03  Aligned_cols=157  Identities=16%  Similarity=0.279  Sum_probs=112.4

Q ss_pred             CcEEEEcCCeEEEEEec-CCCCCCceEEecCCCccccc----------CCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITL----------GSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~----------~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|++|+|.|.+ .+.|.+.|+|+|++..+...          ...+.....+++|.|.+++.+|+|.|+|.+.|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            34788999999999999 78899999999986532111          01233445567999999999999999999998


Q ss_pred             ------------------CCCEEEEcCceeeeecCce-EEEEEEeec-cCCceEEEEecCCeeeecCCceEE---Eee-c
Q psy12803        368 ------------------VPPQILIRNRRVGVPIGRT-ATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYS---ISD-V  423 (902)
Q Consensus       368 ------------------~~P~i~~~p~~~~v~~G~~-v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~---~~~-~  423 (902)
                                        ..|.+..  ....+.++.. +.|.|.+.+ +|.|.|.|++++..+.........   ... .
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  531 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVD--SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP  531 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEES--CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEc--CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence                              1122221  1223455555 467999998 599999999988766543332211   111 2


Q ss_pred             CCCceeeEeEEEEeccC-CCCCeEEEEEEEeCCce
Q psy12803        424 DKGSYQYIMQLNISNVN-ISDFDTYRCISKNEVDI  457 (902)
Q Consensus       424 ~~~s~~~~stL~I~~V~-~~DsG~YtC~A~N~~G~  457 (902)
                      ..+.|...++|.|..++ ..+.|.|+|.|+|.+..
T Consensus       532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            56778889999999998 45588999999998753

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.51  E-value=4.8e-14  Score=151.58  Aligned_cols=162  Identities=18%  Similarity=0.275  Sum_probs=109.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cc--c-----------cc--CCccceec----cCCcEEEEeee
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KP--I-----------TL--GSWKDSAV----ASSTLNFTRIN  354 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~--~-----------~~--~~~~~~~~----~~~sL~I~~Vt  354 (902)
                      ..+..+.+.+|++|+|.|.+.+.+.+.|.|+|.+.  .+  +           ..  ...+....    .+.+|.|.+++
T Consensus        29 ~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~  108 (279)
T 2wbj_D           29 QHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAH  108 (279)
T ss_dssp             EECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCC
T ss_pred             eCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCC
Confidence            34667889999999999999988889999998642  11  0           00  01122221    12379999999


Q ss_pred             eecCceeEEeecCC--------------------------CCEEEEc-CceeeeecCceEEEEEEeecc-CC-ceEEEEe
Q psy12803        355 RINMGAYMCLADNV--------------------------PPQILIR-NRRVGVPIGRTATLECEVEAF-PL-SVRYWEF  405 (902)
Q Consensus       355 ~~DsG~YtC~A~N~--------------------------~P~i~~~-p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k  405 (902)
                      .+|+|.|+|.+.|.                          +|.+... +....+.+|+.++|.|.+.+. |. +.|.|++
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  188 (279)
T 2wbj_D          109 PEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  188 (279)
T ss_dssp             GGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE
T ss_pred             ccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEE
Confidence            99999999999761                          1222111 111123368999999999987 54 7999999


Q ss_pred             cCCeeeecCCceEE------EeecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCceeE
Q psy12803        406 IDGTLIEHDGVKYS------ISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIAK  459 (902)
Q Consensus       406 ~~~~l~~~~~~~~~------~~~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~~  459 (902)
                      ++..+..  .....      +....++.+...+.|.|.....+| .|.|+|.|.|......
T Consensus       189 ~g~~l~~--~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          189 NGKEVHS--GVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             TTEECCT--TEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             CCEECCC--CcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            7765532  11111      011245667778889999888765 6789999999876543

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.51  E-value=1.9e-14  Score=164.40  Aligned_cols=165  Identities=16%  Similarity=0.257  Sum_probs=112.5

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--c-cc------------CCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--I-TL------------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~-~~------------~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.|.|+|++.  .+  + ..            ...+....     ...+|.|.
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            345567899999999999999864  67899998642  21  1 00            01122222     13489999


Q ss_pred             eeeeecCceeEEeecCC------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeee
Q psy12803        352 RINRINMGAYMCLADNV------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLI  411 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~  411 (902)
                      +++.+|+|.|+|.|.|.                  +|.+........+.+|+.++|.|.+.+. |.| .|.|++++..+.
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~  163 (434)
T 1igy_B           84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  163 (434)
T ss_dssp             SBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred             CCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence            99999999999999871                  2333322222335689999999999987 777 999988775421


Q ss_pred             ecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       412 ~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .......    ...+.+...+.|.|.++..+| |.|+|.|.|..+.......|.
T Consensus       164 ~~~~~~~----~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~  212 (434)
T 1igy_B          164 VHTFPAV----LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIV  212 (434)
T ss_dssp             EEECCCE----ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECC
T ss_pred             eEecCce----ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeecc
Confidence            1100000    112445556789999999999 999999999999865554443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.51  E-value=2.2e-14  Score=153.12  Aligned_cols=159  Identities=16%  Similarity=0.308  Sum_probs=107.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc---ccCC----------c-ccee----ccCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI---TLGS----------W-KDSA----VASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~---~~~~----------~-~~~~----~~~~sL~I~~Vt~~  356 (902)
                      .+..+.+.+|++|+|.|.+.+ +.+.|.|+|....  +.   ....          . +...    ..+.+|.|.+++.+
T Consensus        33 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~  111 (270)
T 3qib_D           33 TPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAG  111 (270)
T ss_dssp             ECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGG
T ss_pred             CCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHh
Confidence            455688999999999999876 7789999983211  10   0000          0 1111    12448999999999


Q ss_pred             cCceeEEeecC------------------C------CCEEEE-cCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCe
Q psy12803        357 NMGAYMCLADN------------------V------PPQILI-RNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGT  409 (902)
Q Consensus       357 DsG~YtC~A~N------------------~------~P~i~~-~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~  409 (902)
                      |+|.|.|.+.+                  .      +|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|++++..
T Consensus       112 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  191 (270)
T 3qib_D          112 DSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  191 (270)
T ss_dssp             GCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEE
Confidence            99999999984                  0      232222 122223445999999999998 6766 8999987765


Q ss_pred             eeecCCceEE------EeecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCcee
Q psy12803        410 LIEHDGVKYS------ISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIA  458 (902)
Q Consensus       410 l~~~~~~~~~------~~~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~  458 (902)
                      +..  .....      .....++.+...+.|.|.....+| .|.|+|.|.|.....
T Consensus       192 l~~--~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          192 VHS--GVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             ECT--TEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             CCC--CcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            532  11111      011245566777889999998888 999999999986544

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A

Probab=99.51  E-value=1.1e-13  Score=172.13  Aligned_cols=23  Identities=43%  Similarity=0.690  Sum_probs=9.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q psy12803        110 CPPGLQGPIGQKGEIGAKGEMGV  132 (902)
Q Consensus       110 c~~g~~G~~G~~G~~G~~G~~G~  132 (902)
                      +++|++|++|.+|.+|.+|.+|.
T Consensus        17 g~~g~~G~~G~pG~~G~pG~~G~   39 (1054)
T 1y0f_A           17 GPMGPSGPRGLPGPPGAPGPQGF   39 (1054)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Confidence            33444444444444444443333

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.50  E-value=4.3e-14  Score=161.78  Aligned_cols=164  Identities=15%  Similarity=0.230  Sum_probs=110.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc---cc------------CCccceec-----cCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI---TL------------GSWKDSAV-----ASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~---~~------------~~~~~~~~-----~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.|.|+|++  ..+.   ..            ...+....     .+.+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR   85 (444)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence            44567899999999999998864  6789999864  2110   00            01122222     134899999


Q ss_pred             eeeecCceeEEeecCC---------------------CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCe
Q psy12803        353 INRINMGAYMCLADNV---------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGT  409 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~---------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~  409 (902)
                      ++.+|+|.|+|.|.|.                     +|.+........+.+|+.++|.|.+.+. |.| .|.|++++..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  165 (444)
T 1igt_B           86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  165 (444)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence            9999999999999872                     1222221111224689999999999985 777 9999888764


Q ss_pred             eeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        410 LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       410 l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      +.........  .  .+.+...+.|.|.++..+| |.|+|.|.|..+.......+.
T Consensus       166 ~~~~~~~~~~--~--~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~  216 (444)
T 1igt_B          166 SGVHTFPAVL--Q--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE  216 (444)
T ss_dssp             TTEEECCCEE--E--TTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECC
T ss_pred             CCeEecCccc--c--CCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEec
Confidence            2111111111  1  1445556789999999999 999999999999875554443

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.50  E-value=1e-14  Score=167.03  Aligned_cols=152  Identities=17%  Similarity=0.199  Sum_probs=104.9

Q ss_pred             EEcCCeEEEEEecCCCC----CCceEEecCCCcccccCCcccee------ccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGHP----KPSIIWKTSENKPITLGSWKDSA------VASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~~~~~~~~~~~------~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +.+|++++|.|.+.|.+    .+.|+|+|++..+..........      ...++|.|.+++.+|+|.|+|.|.|     
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            57899999999999873    46899999876543222111111      1234799999999999999999999     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeec-cCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                   .+|.+...+.......+..++|.|.+.+ .|.+ .|.|++++..+..  ..........++.+...+
T Consensus       332 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~--~~~~~~~~~~~g~~~~~s  409 (444)
T 1igt_B          332 PIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELN--YKNTEPVLDSDGSYFMYS  409 (444)
T ss_dssp             CEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSS--EEECCCEECTTSCEEEEE
T ss_pred             ceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccc--cccccceeCCCCCEEEEE
Confidence                         1233332222111123445999999998 4666 8999998776521  111111224556677788


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .|.|.....+|.|.|+|.|.|..-
T Consensus       410 ~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          410 KLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             EEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             EEEEChHHhcCCCeEEEEEECCCc
Confidence            899998888899999999999753

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.50  E-value=3.7e-14  Score=151.57  Aligned_cols=166  Identities=17%  Similarity=0.260  Sum_probs=97.6

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--c-cc------------CCccceec-----cCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--I-TL------------GSWKDSAV-----ASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~-~~------------~~~~~~~~-----~~~sL~I~  351 (902)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|...  .+  + ..            ...+....     ...+|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS   84 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence            345567899999999999999865  67899998642  11  1 00            01122221     12479999


Q ss_pred             eeeeecCceeEEeecCCC-----------C--------EEEEc------Cc------eeeeecCceEEEEEEeecc-CCc
Q psy12803        352 RINRINMGAYMCLADNVP-----------P--------QILIR------NR------RVGVPIGRTATLECEVEAF-PLS  399 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N~~-----------P--------~i~~~------p~------~~~v~~G~~v~L~C~a~g~-P~P  399 (902)
                      +++.+|+|.|.|.+.|..           .        .+.+.      |.      ...+.+|+.++|.|.+.+. |.|
T Consensus        85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~p  164 (257)
T 3bn9_D           85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  164 (257)
T ss_dssp             SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSC
T ss_pred             CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCC
Confidence            999999999999998732           1        12221      11      1124578899999999986 877


Q ss_pred             -eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        400 -VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       400 -~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                       .|.|++++..+.......   ....++.+...++|.|.++..+| |.|+|.|.|..........+.
T Consensus       165 i~v~W~k~g~~~~~~~~~~---~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i~  227 (257)
T 3bn9_D          165 VTVSWNSGALTSGVHTFPA---VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  227 (257)
T ss_dssp             CEEEETTTTCCSSCEECCC---EECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEEC
T ss_pred             cEEEEeeCCCcCCcEecCC---eEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEEc
Confidence             999988776531111111   11344556677889999998888 999999999766555444443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.50  E-value=5.1e-14  Score=129.92  Aligned_cols=96  Identities=24%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+...  .++.+.....     ..+|.|.+++.+|+|.|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   84 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS--ERLSFPADGA-----EHGLLLTAALPTDAGVY   84 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC--SSEECCEETT-----EEEEEESSCCGGGCEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce--eeEEEeecCc-----eEEEEEecCChhhCEEE
Confidence            4789999999999999999999999999999999999988776443  3344333221     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      +|+|.|.+|..+.++.|.|.++|
T Consensus        85 ~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           85 VCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEEEECCCEEEEEEEEEEEcCC
Confidence            99999999999999999998654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.50  E-value=1.1e-14  Score=166.27  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=108.4

Q ss_pred             EEcCCeEEEEEecCCCC----CCceEEecCCCcccccCCccc------eeccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGHP----KPSIIWKTSENKPITLGSWKD------SAVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~~~~~~~~~------~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +.+|++++|.|.+.+.+    .+.|+|+|++..+........      .....++|.|.+++.+|+|.|+|.|.|     
T Consensus       242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            78899999999999973    458999998866532211111      111235799999999999999999998     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                   .+|.+...+......+|+.++|.|.+.+. |. +.|.|++++..+..  ..........++.+...+
T Consensus       322 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~--~~~~~~~~~~~g~~~~~s  399 (434)
T 1igy_B          322 PIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN--YKNTQPIMDTDGSYFVYS  399 (434)
T ss_dssp             CCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSC--CEECCCCCCSSSCEEEEE
T ss_pred             ceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCC--ceeccceeCCCCcEEEEE
Confidence                         13333333322223467789999999985 43 48999998876622  211112224556677788


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .|.|.....+|+|.|+|.|.|....
T Consensus       400 ~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          400 KLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             EEEECchhccCCCEEEEEEEcCCCC
Confidence            8999999889999999999998643

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.49  E-value=1.5e-14  Score=158.50  Aligned_cols=156  Identities=17%  Similarity=0.234  Sum_probs=104.0

Q ss_pred             CeEEEEEecCCC-C-CCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecCC----------
Q psy12803        307 DNVRLRCVATGH-P-KPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADNV----------  368 (902)
Q Consensus       307 e~v~L~C~a~G~-P-~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N~----------  368 (902)
                      ++++|.|.+.+. | .+.|+|+|++..+............+      +.|.|.++..+|+|.|+|+|.|.          
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999985 4 57999999876543221110011112      25777777778999999999981          


Q ss_pred             -------CCEE-EEcCceeeeecCceEEEEEEeecc-CCc---eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEE
Q psy12803        369 -------PPQI-LIRNRRVGVPIGRTATLECEVEAF-PLS---VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       369 -------~P~i-~~~p~~~~v~~G~~v~L~C~a~g~-P~P---~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                             .|.+ ...+..+.+.+|++++|.|.+.+. |.+   .|.|+++++..+.... .... ...++.+...++|.|
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~-~~~~-~~~~g~~~~~~~L~I  182 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST-RKEE-KQRNGTLTVTSTLPV  182 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCC-CEEE-ECTTSCEEEEEEEEC
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccccc-CCCc-cCCCCCEEEEEEEEE
Confidence                   1222 333444557789999999999986 566   8999997655433221 1111 122333445668999


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      .+++.+|+|.|+|.|.|..+.....+.|
T Consensus       183 ~~~~~~D~G~Y~C~a~n~~~~~~~~~~v  210 (323)
T 2wqr_A          183 GTRDWIEGETYQCRVTHPHLPRALMRST  210 (323)
T ss_dssp             CHHHHHTTCCEEEEEECTTSSSCEEEEE
T ss_pred             CHHHccCCCCEEEEEECCCCCCCeeeEE
Confidence            9999999999999999987544333333

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.49  E-value=9.1e-14  Score=159.80  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=112.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--c-cc------------CCccceec-----cCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--I-TL------------GSWKDSAV-----ASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~-~~------------~~~~~~~~-----~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.+  .+.|.|+|...  .+  + ..            ...+....     ...+|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            45568899999999999999876  77899998531  11  1 00            01122221     123799999


Q ss_pred             eeeecCceeEEeecCC------------------------------CCEEEEcCceeeeecCceEEEEEEeecc-CC-ce
Q psy12803        353 INRINMGAYMCLADNV------------------------------PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SV  400 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~  400 (902)
                      ++.+|+|.|+|.|.|.                              +|.+...+....+.+|+.++|.|.+.+. |. +.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  165 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence            9999999999999762                              1222221222235689999999999987 65 79


Q ss_pred             EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       401 v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |.|++++..+...   .........+.+...+.|.|.++..+| |.|+|.|.|..+.......|.+
T Consensus       166 v~W~k~~~~~~~~---~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~  227 (457)
T 1hzh_H          166 VSWNSGALTSGVH---TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEP  227 (457)
T ss_dssp             EEETTTTBCTTEE---EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEeCCEeccce---EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecc
Confidence            9998877543111   111111233445566789999999999 9999999998887665554443

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=1.1e-13  Score=145.45  Aligned_cols=165  Identities=18%  Similarity=0.295  Sum_probs=109.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC--CCCceEEecCCC--cc--cc-c------------CCccceec-----cCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSEN--KP--IT-L------------GSWKDSAV-----ASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~--~~--~~-~------------~~~~~~~~-----~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.  +.+.+.|+|...  .+  +. .            ...+....     .+.+|.|.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            3556889999999999999875  678999998542  11  10 0            11122221     234799999


Q ss_pred             eeeecCceeEEeecCCC-------------CEEEEc---------C-------ceeeeecCceEEEEEEeecc-CC-ceE
Q psy12803        353 INRINMGAYMCLADNVP-------------PQILIR---------N-------RRVGVPIGRTATLECEVEAF-PL-SVR  401 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~~-------------P~i~~~---------p-------~~~~v~~G~~v~L~C~a~g~-P~-P~v  401 (902)
                      ++.+|+|.|.|.+.+..             ..+.+.         +       ....+.+|+.++|.|.+.+. |. +.|
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v  166 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI  166 (242)
T ss_dssp             CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred             CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence            99999999999997621             011111         1       11123358999999999987 64 799


Q ss_pred             EEEecCC-eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803        402 YWEFIDG-TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       402 ~W~k~~~-~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V  466 (902)
                      .|++++. .+.......  .. ...+.+...++|.|..+.. | |.|+|.|.|..+....+..|.+
T Consensus       167 ~W~~~~~~~l~~~~~~~--~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          167 HWEEKKSNTILGSQEGN--TM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEESSSCCCCCCEECC--CE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEEcCCCEeecCccccc--ee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            9999886 442211001  11 1334566678899988875 5 9999999999887654555544

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.48  E-value=8.4e-14  Score=146.40  Aligned_cols=168  Identities=17%  Similarity=0.232  Sum_probs=111.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC----CCceEEecCCCc--c--c-ccC-----------------Cccceec-----c
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP----KPSIIWKTSENK--P--I-TLG-----------------SWKDSAV-----A  344 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~--~--~-~~~-----------------~~~~~~~-----~  344 (902)
                      ..+..+.+.+|++|+|.|.+.+.+    ...+.|+|....  +  + ...                 ..+....     .
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            345567899999999999998755    348999984321  1  1 000                 0111111     1


Q ss_pred             CCcEEEEeeeeecCceeEEeecC-------------------------------CCCEEEEcCceeeeecCceEEEEEEe
Q psy12803        345 SSTLNFTRINRINMGAYMCLADN-------------------------------VPPQILIRNRRVGVPIGRTATLECEV  393 (902)
Q Consensus       345 ~~sL~I~~Vt~~DsG~YtC~A~N-------------------------------~~P~i~~~p~~~~v~~G~~v~L~C~a  393 (902)
                      ..+|.|.+++.+|+|.|.|.+.+                               .+|.+...+....+..|+.++|.|.+
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~  164 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  164 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEE
Confidence            23599999999999999999853                               12333322223335579999999999


Q ss_pred             ecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        394 EAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       394 ~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      .+. |.+ .+.|++++..+.......   ....++.+...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       165 ~~~~p~~~~v~W~~~g~~~~~~~~~~---~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  236 (239)
T 3tv3_H          165 KDYFPEPVTVSWNSGALTSGVHTFPA---VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  236 (239)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCC---EECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             eeEeCCCeEEEEEECCccCceEecCc---eECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence            884 544 488988765321111111   12345667778899999999999 99999999998877776666553

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.47  E-value=6.2e-14  Score=146.95  Aligned_cols=157  Identities=19%  Similarity=0.251  Sum_probs=103.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-----------cCCccceec----cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-----------LGSWKDSAV----ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-----------~~~~~~~~~----~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.+.. +.+.+.|+|.+..  +  +.           ....+....    .+.+|.|.+++.+|
T Consensus         5 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   83 (238)
T 1bec_A            5 SPRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQ   83 (238)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGG
T ss_pred             CCCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCccc
Confidence            456788999999999999964 6789999986421  1  00           001122221    22489999999999


Q ss_pred             CceeEEeecCC-------------------------CCEEEE-cCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCe
Q psy12803        358 MGAYMCLADNV-------------------------PPQILI-RNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGT  409 (902)
Q Consensus       358 sG~YtC~A~N~-------------------------~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~  409 (902)
                      +|.|.|.+.|.                         +|.+.. .+....+.+|+.++|.|.+.+. |.+ .|.|++++..
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~  163 (238)
T 1bec_A           84 TSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE  163 (238)
T ss_dssp             CEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEE
T ss_pred             CEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEE
Confidence            99999999763                         122221 1122234468999999999986 654 9999987766


Q ss_pred             eeecCCceEE--EeecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCc
Q psy12803        410 LIEHDGVKYS--ISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVD  456 (902)
Q Consensus       410 l~~~~~~~~~--~~~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G  456 (902)
                      +..  .....  .....++.+...+.|.|.....+| .|.|+|.|.|...
T Consensus       164 ~~~--~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          164 VHS--GVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             ECT--TEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CCC--ceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            532  11111  111234556666778887766655 5789999999754

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.47  E-value=1.1e-13  Score=144.31  Aligned_cols=167  Identities=16%  Similarity=0.218  Sum_probs=106.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCce--EEecCCCc----cc-c---cC-----------Cccceec-----cCCcE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSI--IWKTSENK----PI-T---LG-----------SWKDSAV-----ASSTL  348 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v--~W~k~~~~----~~-~---~~-----------~~~~~~~-----~~~sL  348 (902)
                      .+..+.+.+|++|+|.|.+.+.+  ...+  .|+|....    .+ .   ..           ..+....     .+.+|
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (232)
T 3qhz_H            6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL   85 (232)
T ss_dssp             EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred             cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence            34457799999999999997632  2455  99984321    11 0   00           0112111     11269


Q ss_pred             EEEeeeeecCceeEEeecC--------------------------CCCEEEEcCceeeeecCceEEEEEEeeccCC--ce
Q psy12803        349 NFTRINRINMGAYMCLADN--------------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL--SV  400 (902)
Q Consensus       349 ~I~~Vt~~DsG~YtC~A~N--------------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~--P~  400 (902)
                      .|.+++.+|+|.|.|.+.+                          .+|.+........+..|+.++|.|.+.+.++  ..
T Consensus        86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~  165 (232)
T 3qhz_H           86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (232)
T ss_dssp             EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCE
T ss_pred             EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeE
Confidence            9999999999999999973                          1233332222234567999999999998643  35


Q ss_pred             EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       401 v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +.|++++..+.......   ....++.+...+.|.|..+...| |.|+|.|.|..+.......|.+.
T Consensus       166 v~W~~~g~~~~~~~~~~---~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          166 VSWNSGALTSGVHTFPA---VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EEEGGGTBCTTEEECCC---EECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEECCEecceeeccc---eeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            78988764321111111   12334566777889999999999 99999999999888777776654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=145.47  Aligned_cols=158  Identities=19%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcc----c-ccCC----------c-cceeccCCc--EEEEeeeeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP----I-TLGS----------W-KDSAVASST--LNFTRINRINM  358 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~----~-~~~~----------~-~~~~~~~~s--L~I~~Vt~~Ds  358 (902)
                      .+..+.+.+|++|+|.|.+.+.+.+.+.|+|.....    + ....          . +.....+..  |.|.+++.+|+
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~Ds   86 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSC
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhC
Confidence            355688999999999999999889999999832110    0 0000          0 222222222  99999999999


Q ss_pred             ceeEEeecCC--------------------------CCEEEEc-CceeeeecCceEEEEEEeec-cCCc-eEEEEecCCe
Q psy12803        359 GAYMCLADNV--------------------------PPQILIR-NRRVGVPIGRTATLECEVEA-FPLS-VRYWEFIDGT  409 (902)
Q Consensus       359 G~YtC~A~N~--------------------------~P~i~~~-p~~~~v~~G~~v~L~C~a~g-~P~P-~v~W~k~~~~  409 (902)
                      |.|.|.+.+.                          +|.+... +....+.+|+.++|.|.+.+ .|.+ .|.|++++..
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~  166 (253)
T 3to4_D           87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (253)
T ss_dssp             EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE
Confidence            9999999731                          1111110 11111224689999999998 5766 8999987765


Q ss_pred             eeecCCceEEEe------ecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCc
Q psy12803        410 LIEHDGVKYSIS------DVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVD  456 (902)
Q Consensus       410 l~~~~~~~~~~~------~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G  456 (902)
                      +..  .......      ...++.+...+.|.|.....+| .|.|+|.|.|..-
T Consensus       167 l~~--~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          167 VHS--GVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             ECT--TEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCC--ceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            532  1111100      0145667777889999998888 7799999999753

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.46  E-value=4.6e-14  Score=144.98  Aligned_cols=167  Identities=15%  Similarity=0.135  Sum_probs=109.1

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec---cCCcEEEEeeeeecCceeEEeecCCC---
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV---ASSTLNFTRINRINMGAYMCLADNVP---  369 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~N~~---  369 (902)
                      ..+.++.+.+|+++.|.|.+.+.|.|.|.|+|++..+......+....   ..++|.|.+++.+|+|.|+|.|.|..   
T Consensus        23 ~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  102 (215)
T 3mtr_A           23 QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE  102 (215)
T ss_dssp             ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE
T ss_pred             cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce
Confidence            345568899999999999999999999999998766543322222222   24689999999999999999999910   


Q ss_pred             ---CEEEE--c---Ccee-eeecCceEEEEEEee----ccCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803        370 ---PQILI--R---NRRV-GVPIGRTATLECEVE----AFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       370 ---P~i~~--~---p~~~-~v~~G~~v~L~C~a~----g~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL  434 (902)
                         ..+.+  .   +... ....+..+.|.|...    +.|..  .+.|.+++.....  ...........     ...|
T Consensus       103 ~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~--~~~~~~~~~~~-----~~~l  175 (215)
T 3mtr_A          103 SLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH--SKWYDAKEASM-----EGIV  175 (215)
T ss_dssp             EEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE--EEEEEHHHHHH-----HTEE
T ss_pred             EEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc--ccccccccccc-----cccE
Confidence               01111  0   1111 123467788888742    33443  4778765533110  00001000000     1349


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      .|.++...|.|.|+|.|.|.+|....+..+.+..+
T Consensus       176 ~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~  210 (215)
T 3mtr_A          176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ  210 (215)
T ss_dssp             EEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred             EECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence            99999999999999999999998876666666543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.45  E-value=1.5e-13  Score=158.98  Aligned_cols=158  Identities=18%  Similarity=0.243  Sum_probs=104.9

Q ss_pred             EEcCCeEEEEEecCCC-CC-C-ceEEecCCCcccccCCcccee-cc------CCcEEEEeeeeecCceeEEeecCC----
Q psy12803        303 VREGDNVRLRCVATGH-PK-P-SIIWKTSENKPITLGSWKDSA-VA------SSTLNFTRINRINMGAYMCLADNV----  368 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~-P~-p-~v~W~k~~~~~~~~~~~~~~~-~~------~~sL~I~~Vt~~DsG~YtC~A~N~----  368 (902)
                      +.+|+.++|.|.+.|. |. + .|+|+|++..... ....... ..      .+.|.|..+..+|+|.|+|.|.|.    
T Consensus       138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  216 (475)
T 1iga_A          138 TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTA-RNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  216 (475)
T ss_pred             cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccce-EeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc
Confidence            3689999999999996 65 4 9999997643211 1001011 11      235888888889999999999981    


Q ss_pred             -----------------------------CCEE-EEcCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeeeecCC
Q psy12803        369 -----------------------------PPQI-LIRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLIEHDG  415 (902)
Q Consensus       369 -----------------------------~P~i-~~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~~~~~  415 (902)
                                                   +|.+ ...+....+.+|++++|.|.+.+.++   +.|.|  ++..+.....
T Consensus       217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~  294 (475)
T 1iga_A          217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQ  294 (475)
T ss_pred             eeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccc
Confidence                                         1112 11222233578999999999998754   68999  4443322111


Q ss_pred             ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        416 VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       416 ~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      .  ......++.+...++|.|.+++.+|+|.|+|.|.|..+.......|.
T Consensus       295 ~--~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~  342 (475)
T 1iga_A          295 G--PPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLS  342 (475)
T ss_pred             c--CceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEee
Confidence            1  11112233445667899999999999999999999999865555554

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.45  E-value=3.4e-13  Score=140.67  Aligned_cols=169  Identities=16%  Similarity=0.271  Sum_probs=110.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCc--c--c-cc------------CCccceeccC-----CcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENK--P--I-TL------------GSWKDSAVAS-----STLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~--~--~-~~------------~~~~~~~~~~-----~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+  .....+.|+|....  +  + ..            ...+.....+     .+|+|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (230)
T 3n9g_H            6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS   85 (230)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            445688999999999999875  23567999974321  1  1 00            0112222111     2499999


Q ss_pred             eeeecCceeEEeecCC--------------------------CCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEE
Q psy12803        353 INRINMGAYMCLADNV--------------------------PPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWE  404 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~--------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~  404 (902)
                      ++.+|+|.|.|.+.+.                          +|.+........+.+|+.++|.|.+.+. | .+.+.| 
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W-  164 (230)
T 3n9g_H           86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  164 (230)
T ss_dssp             CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred             CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence            9999999999998642                          1222211222234589999999999885 4 346899 


Q ss_pred             ecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        405 FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       405 k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                       ++..+.. ...........++.+...++|.|..+..+| |.|+|.|.|..+.......|.|.+.
T Consensus       165 -~~~~~~~-~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~~  226 (230)
T 3n9g_H          165 -NSGALTS-GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKSC  226 (230)
T ss_dssp             -GGGTBCT-TEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCTT
T ss_pred             -CCcccCC-CeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCCC
Confidence             4433321 100101112345667778899999999999 9999999999888777777776643

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.44  E-value=4.1e-13  Score=142.07  Aligned_cols=160  Identities=19%  Similarity=0.265  Sum_probs=106.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-----------cCCccceec----cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-----------LGSWKDSAV----ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-----------~~~~~~~~~----~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.+.. +.+.+.|+|....  +  +.           ....+....    .+.+|.|.+++.+|
T Consensus         9 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   87 (252)
T 1oga_E            9 SPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   87 (252)
T ss_dssp             SCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence            456688999999999999864 6789999986421  1  10           001122222    23589999999999


Q ss_pred             CceeEEeecCC-----------------------CCEEEEc-CceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeee
Q psy12803        358 MGAYMCLADNV-----------------------PPQILIR-NRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLI  411 (902)
Q Consensus       358 sG~YtC~A~N~-----------------------~P~i~~~-p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~  411 (902)
                      +|.|.|.+.|.                       +|.+... +....+.+|+.++|.|.+.+. |. +.|.|++++..+.
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            99999998762                       1222111 111123368999999999986 75 4999999776553


Q ss_pred             ecCCceEE------EeecCCCceeeEeEEEEeccCCC-CCeEEEEEEEeCCceeE
Q psy12803        412 EHDGVKYS------ISDVDKGSYQYIMQLNISNVNIS-DFDTYRCISKNEVDIAK  459 (902)
Q Consensus       412 ~~~~~~~~------~~~~~~~s~~~~stL~I~~V~~~-DsG~YtC~A~N~~G~~~  459 (902)
                      .  .....      +....++.+...+.|.|...... |.|.|+|.|.|......
T Consensus       168 ~--~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          168 S--GVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             S--SEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             C--CcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            2  11111      01134566777888999887664 57899999999865443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.44  E-value=1.1e-13  Score=153.17  Aligned_cols=153  Identities=15%  Similarity=0.180  Sum_probs=102.7

Q ss_pred             EEEcCCeEEEEEecCCC-CC-CceEEecCCCcccccCCccc-----eeccCCcEEEEeeeeecCceeEEeecCC------
Q psy12803        302 VVREGDNVRLRCVATGH-PK-PSIIWKTSENKPITLGSWKD-----SAVASSTLNFTRINRINMGAYMCLADNV------  368 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~-P~-p~v~W~k~~~~~~~~~~~~~-----~~~~~~sL~I~~Vt~~DsG~YtC~A~N~------  368 (902)
                      .+.+|++++|.|.+.|. |. +.|+|+|++..+........     .....+.|.|.+++.+| |.|+|.|.|.      
T Consensus       131 ~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~  209 (344)
T 1za6_B          131 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  209 (344)
T ss_dssp             TTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEE
T ss_pred             cccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            35689999999999986 65 79999998754311100000     01112378999999888 9999999981      


Q ss_pred             --------------------------------CCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecC
Q psy12803        369 --------------------------------PPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHD  414 (902)
Q Consensus       369 --------------------------------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~  414 (902)
                                                      +|.+...+......+|..++|.|.+.|. | .+.|.|++++..+....
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  289 (344)
T 1za6_B          210 DKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK  289 (344)
T ss_dssp             EEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE
T ss_pred             eEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE
Confidence                                            1222221111112346779999999996 4 35899999887663221


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                        ........++.+...+.|.|.....+|.|.|+|+|.|....
T Consensus       290 --~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          290 --TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             --ECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             --ecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence              11122245566777888999888888999999999997654

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.43  E-value=2e-14  Score=148.40  Aligned_cols=157  Identities=16%  Similarity=0.207  Sum_probs=104.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCC---CceEEecCCCcccccCCcc------ceeccCCcEEEEeeeeecCceeEEeecC-
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPK---PSIIWKTSENKPITLGSWK------DSAVASSTLNFTRINRINMGAYMCLADN-  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~---p~v~W~k~~~~~~~~~~~~------~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-  367 (902)
                      +..+.+.+|++++|.|.+.+.+.   +.|.| + +..........      .......+|.|.+++.+|+|.|+|.|.| 
T Consensus        11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~   88 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP   88 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred             cChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence            44566789999999999999654   68999 4 33322110000      0011234788999999999999999998 


Q ss_pred             --C--------------CCEEEEcC-ceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeec---CC
Q psy12803        368 --V--------------PPQILIRN-RRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDV---DK  425 (902)
Q Consensus       368 --~--------------~P~i~~~p-~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~---~~  425 (902)
                        .              +|.+.+.+ ....+.+|+.++|.|.+.+. |. +.|.|++++..+.............   .+
T Consensus        89 ~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~d  168 (214)
T 1ow0_A           89 ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT  168 (214)
T ss_dssp             SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSS
T ss_pred             CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCC
Confidence              1              22222211 11224578899999999986 54 4899999876654321111111223   56


Q ss_pred             CceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        426 GSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       426 ~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      +.+...+.|.|.....+|.|.|+|.|.|...
T Consensus       169 gt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          169 TTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             CcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            7778888898887766778999999999764

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.43  E-value=3.8e-13  Score=151.58  Aligned_cols=152  Identities=15%  Similarity=0.173  Sum_probs=108.3

Q ss_pred             EEcCCeEEEEEecCCC-CC---CceEEecCCCcccccCCccc------eeccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGH-PK---PSIIWKTSENKPITLGSWKD------SAVASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~-P~---p~v~W~k~~~~~~~~~~~~~------~~~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +.+|++++|.|.+.+. |.   ..|+|+|++..+........      .......|.|..++.+|+|.|+|.+.+     
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            7889999999999986 33   36999998865432111111      111233799999999999999999988     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                   .+|.+.+.+....+.+|+.++|.|.+.++ | .+.|+|++++..+..  ..........++.+...+
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~--~~~~~~~~~~dgty~~~s  337 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAEN--YKNTQPIMNTNESYFVYS  337 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCC--eEeCCceECCCCCEEEEE
Confidence                         23444444444444468899999999986 3 458999998866532  111122235566788888


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .|.|.....+|.|.|+|+|.|..-
T Consensus       338 ~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          338 KLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEEcHHHhCCCCcEEEEEEeCCC
Confidence            999999888899999999999764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.43  E-value=4.7e-13  Score=154.85  Aligned_cols=154  Identities=16%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             EEEcCCeEEEEEecCCCCC---CceEEecCCCcccccCCcccee------ccCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        302 VVREGDNVRLRCVATGHPK---PSIIWKTSENKPITLGSWKDSA------VASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~G~P~---p~v~W~k~~~~~~~~~~~~~~~------~~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      .+.+|++++|.|.+.+.+.   +.|+| + +..+..........      ...+.|.|.+++.+|+|.|+|.|.|     
T Consensus       258 ~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          258 DLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT  335 (475)
T ss_pred             HhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence            3689999999999998643   68999 4 43332211111111      1234799999999999999999998     


Q ss_pred             ------------CCCEEEEcCc-eeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeec---CCCcee
Q psy12803        368 ------------VPPQILIRNR-RVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDV---DKGSYQ  429 (902)
Q Consensus       368 ------------~~P~i~~~p~-~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~---~~~s~~  429 (902)
                                  .+|.+.+.+. ...+.+|+++.|.|.+.+. | .+.|.|++++..+.............   .++.+.
T Consensus       336 ~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~  415 (475)
T 1iga_A          336 PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFA  415 (475)
T ss_pred             ceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEE
Confidence                        1233322222 1235678999999999986 4 35999999876654321011111222   455677


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      ..+.|.|.....+|.|.|+|.|.|....
T Consensus       416 ~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          416 VTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            7889999999999999999999998654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.41  E-value=5.1e-13  Score=141.64  Aligned_cols=169  Identities=18%  Similarity=0.244  Sum_probs=108.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCc--c--c-c---c---------CCccceec-----cCCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENK--P--I-T---L---------GSWKDSAV-----ASSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~--~--~-~---~---------~~~~~~~~-----~~~sL~I  350 (902)
                      +..+..+.+.+|++|+|.|.+.+  .+...+.|+|....  +  + .   .         ...+....     ...+|+|
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   82 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM   82 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            34566788999999999999975  34568999974321  1  1 0   0         01122221     1235999


Q ss_pred             EeeeeecCceeEEeecC----------------------------------------CCCEEEEcCceeeeecCceEEEE
Q psy12803        351 TRINRINMGAYMCLADN----------------------------------------VPPQILIRNRRVGVPIGRTATLE  390 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N----------------------------------------~~P~i~~~p~~~~v~~G~~v~L~  390 (902)
                      .+++.+|+|.|.|.+.+                                        .+|.+........+..|+.++|.
T Consensus        83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~  162 (248)
T 3u2s_H           83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALG  162 (248)
T ss_dssp             CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEE
T ss_pred             CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEE
Confidence            99999999999999862                                        12333322222334568999999


Q ss_pred             EEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        391 CEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       391 C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |.+.+. | ...+.|++++..+......   .....++.+...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~---~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          163 CLVKDYFPEPVTVSWNSGALTSGVHTFP---AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECC---CEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             EEEeeEECCCeEEEEeECCccCceeecC---ceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence            999874 5 4578998876432111111   112345667778899999999888 99999999998877666666543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.40  E-value=2e-13  Score=156.86  Aligned_cols=152  Identities=14%  Similarity=0.164  Sum_probs=102.4

Q ss_pred             EEcCCeEEEEEecCCCCCC----ceEEecCCCcccccCCccceeccCCcEEEEeee---eec---CceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGHPKP----SIIWKTSENKPITLGSWKDSAVASSTLNFTRIN---RIN---MGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P~p----~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt---~~D---sG~YtC~A~N-----  367 (902)
                      +.+|++++|.|.+.|.|.+    .|+|+|++..+............++.|.|..+.   .+|   +|.|+|.|.|     
T Consensus       261 ~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred             cccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence            5689999999999997543    899999876543221111223345666666443   555   9999999997     


Q ss_pred             -------------CCCEEEEcCce-eeeecCceEEEEEEeeccCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeE
Q psy12803        368 -------------VPPQILIRNRR-VGVPIGRTATLECEVEAFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       368 -------------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~  431 (902)
                                   .+|.+...+.. ..+..|+ ++|.|.+.+.|++  .|.|++++..+....  ........++.+...
T Consensus       341 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~--~~~~~~~~~g~~~~~  417 (457)
T 1hzh_H          341 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYK--TTPPVLDSDGSFFLY  417 (457)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEE--ECCCEECTTSCEEEE
T ss_pred             cceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECccee--ecCceeCCCCCEEEE
Confidence                         12333332222 2233445 9999999997544  899999876653211  111223455667778


Q ss_pred             eEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        432 MQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      +.|.|.....+|+|.|+|.|.|....
T Consensus       418 s~l~i~~~~~~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          418 SKLTVDKSRWQQGNVFSCSVMHEALH  443 (457)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEChHHccCCCeEEEEEEECCCC
Confidence            88999988888999999999998643

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=8.7e-13  Score=137.79  Aligned_cols=157  Identities=17%  Similarity=0.277  Sum_probs=103.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC--CCCceEEecCCC--cc--cc-c-----------CCccceec-----cCCcEEEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSEN--KP--IT-L-----------GSWKDSAV-----ASSTLNFTRI  353 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~--~~--~~-~-----------~~~~~~~~-----~~~sL~I~~V  353 (902)
                      .+..+.+.+|++|+|.|.+.+.  +.+.+.|+|...  .+  +. .           ...+....     .+.+|.|.++
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence            3556889999999999999874  567899998542  11  10 0           11222222     1237999999


Q ss_pred             eeecCceeEEeecCC---C-------CEEEEc----------Cceee--------eecCceEEEEEEeecc-CC-ceEEE
Q psy12803        354 NRINMGAYMCLADNV---P-------PQILIR----------NRRVG--------VPIGRTATLECEVEAF-PL-SVRYW  403 (902)
Q Consensus       354 t~~DsG~YtC~A~N~---~-------P~i~~~----------p~~~~--------v~~G~~v~L~C~a~g~-P~-P~v~W  403 (902)
                      +.+|+|.|.|.+.+.   .       -.+.+.          +....        +.+|+.++|.|.+.+. |. +.|.|
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W  166 (230)
T 1ypz_F           87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYW  166 (230)
T ss_dssp             CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEE
T ss_pred             ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEE
Confidence            999999999999862   1       122221          11111        2247889999999987 75 59999


Q ss_pred             Ee-cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        404 EF-IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       404 ~k-~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      ++ ++..+....  ...+. ..++.+...+.|.|..+.. | |.|+|.|.|.....
T Consensus       167 ~~~~g~~l~~~~--~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          167 KEKDGNTILDSQ--EGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             ECTTSSCBCCCE--ECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             EccCCeEccccc--cceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            98 554442211  10111 2345566678899998886 5 99999999987643

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=2e-12  Score=115.85  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+..............      .++|.|.+++.+|+|.|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~   78 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN------VCELVIRDVTGEDSASIM   78 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT------EEEEEECSCCGGGCEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC------EEEEEECCCCcCCCEEEE
Confidence            57888888889999999999999999999999999998876654332222111111      345999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeec
Q psy12803        449 CISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|.|..|....++.|.|..
T Consensus        79 C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           79 VKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCcEEEEEEEEEec
Confidence            99999999999999998864

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.38  E-value=1.3e-12  Score=138.74  Aligned_cols=170  Identities=18%  Similarity=0.299  Sum_probs=107.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC--CCCceEEecCCCc--c--cc-------------cCCccceecc-----CCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSENK--P--IT-------------LGSWKDSAVA-----SSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~--~--~~-------------~~~~~~~~~~-----~~sL~I  350 (902)
                      +..+..+.+.+|++|+|.|.+.+.  ....+.|+|....  +  +.             ....+.....     +.+|+|
T Consensus        27 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  106 (256)
T 3sob_H           27 LVESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQM  106 (256)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEE
Confidence            334456789999999999998753  3567999974321  1  10             0011222211     124999


Q ss_pred             EeeeeecCceeEEeecC-----------------------------CCCEEEEcCceeeeecCceEEEEEEeecc-C-Cc
Q psy12803        351 TRINRINMGAYMCLADN-----------------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-P-LS  399 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N-----------------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P  399 (902)
                      .+++.+|+|.|.|.+.+                             .+|.+........+.+|+.++|.|.+.+. | .+
T Consensus       107 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~  186 (256)
T 3sob_H          107 NSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  186 (256)
T ss_dssp             CSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred             CCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence            99999999999999863                             12233222222235689999999999874 5 34


Q ss_pred             eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        400 VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       400 ~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .+.|  ++..+.. ...........++.+...++|.|..+..+| |.|+|.|.|..+....+..|.+.+
T Consensus       187 ~v~W--~~~~~~~-~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~  251 (256)
T 3sob_H          187 TVSW--NSGALTS-GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS  251 (256)
T ss_dssp             EEEE--GGGTBCT-TEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred             EEEE--CCcccCC-CeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence            7899  4433311 000001112445667778899999999999 999999999988777776665543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=2.5e-12  Score=118.95  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=82.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+....  ++.+.....     .++|.|.+++.+|+|.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~--~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   78 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE--HMKVENSEN-----GSKLTILAARQEHCGCY   78 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSS--SEEEEECSS-----EEEEEETTCCTTTCEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCC--CEEEEEcCC-----EEEEEECCCChhcCEEE
Confidence            46888888888999999999999999999999999999887775433  333332211     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTPV  473 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~~  473 (902)
                      +|.|.|..|..+..+.|.|...+.++
T Consensus        79 ~C~a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           79 TLLVENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             EEEEEECCCcEEEEEEEEEECCCCCC
Confidence            99999999999999999998776553

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.37  E-value=1.4e-12  Score=135.84  Aligned_cols=164  Identities=18%  Similarity=0.277  Sum_probs=105.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC--CCCceEEecCCC--c--ccc---c----------CCccceec-----cCCcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSEN--K--PIT---L----------GSWKDSAV-----ASSTLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~--~--~~~---~----------~~~~~~~~-----~~~sL~I~~  352 (902)
                      .+..+.+.+|++|+|.|.+.+.  +...+.|+|...  .  .+.   .          ...+....     .+.+|+|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (226)
T 3mlr_H            6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT   85 (226)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred             cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence            4456889999999999998762  356899998431  1  110   0          01122221     123599999


Q ss_pred             eeeecCceeEEeecC---------------------------CCCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEE
Q psy12803        353 INRINMGAYMCLADN---------------------------VPPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYW  403 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N---------------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W  403 (902)
                      ++.+|+|.|.|.+.+                           .+|.+...+....+.+|+.+.|.|.+.+. | .+.+.|
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H           86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence            999999999999842                           12333322222234578999999999875 4 457899


Q ss_pred             EecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        404 EFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       404 ~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                        ++..+.. ...........++.+...+.|.|.....+| |.|+|.|.|..+.......|
T Consensus       166 --~~~~~~~-~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  222 (226)
T 3mlr_H          166 --NSGALTS-GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  222 (226)
T ss_dssp             --GGGTCCT-TEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             --CCccccC-CeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence              3332211 100101112445667778899999999999 99999999998776555444

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.36  E-value=2e-12  Score=116.16  Aligned_cols=95  Identities=24%  Similarity=0.356  Sum_probs=77.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+.......+....  .+    .++|.|.+++.+|+|.|+
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~----~~~L~i~~v~~~D~G~Y~   78 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE--KG----LHSLIFEVVRASDAGAYA   78 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEET--TT----EEEEEESSCCGGGCEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcC--CC----eEEEEECCCCcccCEEEE
Confidence            567777778888999999999999999999999999988776544333333221  11    235999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeecC
Q psy12803        449 CISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~~  469 (902)
                      |.|.|..|..+.++.|.|...
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           79 CVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCCCeEEEEEEEEEEec
Confidence            999999999999999998754

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.36  E-value=5e-12  Score=148.22  Aligned_cols=169  Identities=15%  Similarity=0.145  Sum_probs=109.2

Q ss_pred             CcEEEEcCCeEEEEEecCCC-C-CCceEEecCCCccccc-CCccceeccC------CcEEEEeeeeecCceeEEeecC--
Q psy12803        299 SPIVVREGDNVRLRCVATGH-P-KPSIIWKTSENKPITL-GSWKDSAVAS------STLNFTRINRINMGAYMCLADN--  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~-P-~p~v~W~k~~~~~~~~-~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N--  367 (902)
                      ....+.+|++++|.|.+.+. | ...|+|+|++..+... .........+      +.|.|..+..+|.|.|+|.|.|  
T Consensus       305 ~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~  384 (512)
T 1zvo_C          305 AVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS  384 (512)
T ss_pred             ChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCC
Confidence            33446789999999999985 4 2489999987664311 1111111122      3589999999999999999998  


Q ss_pred             -CCC--EEEE-------cCceeeee----cCceEE-EEEEeeccCCc--eEEEEecCCeeeecCCceEEEeecCCCc-ee
Q psy12803        368 -VPP--QILI-------RNRRVGVP----IGRTAT-LECEVEAFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGS-YQ  429 (902)
Q Consensus       368 -~~P--~i~~-------~p~~~~v~----~G~~v~-L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s-~~  429 (902)
                       ..+  .+..       .+..+.+.    +|+.+. |.|.+.+++++  .|.|++++..+...............+. +.
T Consensus       385 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~  464 (512)
T 1zvo_C          385 LPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFW  464 (512)
T ss_pred             CCCCceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEE
Confidence             111  1111       01112222    588899 99999986443  6899998876643211111122233444 67


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEee
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIA--KGSLILFES  467 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~  467 (902)
                      ..+.|.|.....+|.|.|+|+|.|.....  .....|.|.
T Consensus       465 ~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~  504 (512)
T 1zvo_C          465 AWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS  504 (512)
T ss_pred             EEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence            77889999888889999999999987553  344444443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.35  E-value=3.9e-12  Score=114.00  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=77.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+... ..++......     ..++|.|.+++.+|+|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~-~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y   77 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD-QRRFAEEAEG-----GLCRLRILAAERGDAGFY   77 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCB-TTEEEEECGG-----GEEEEEESSCCGGGCEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCC-CCEEEEECCC-----CEEEEEEccCCcCCCEEE
Confidence            3678888888889999999999999999999999999988766443 2333332221     124699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeec
Q psy12803        448 RCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|.|.|..|..+.++.|.|.+
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           78 TCKAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCceeEEEEEEEEC
Confidence            999999999999999998864

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-12  Score=119.61  Aligned_cols=99  Identities=21%  Similarity=0.359  Sum_probs=82.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|++++|.|.+.+.|.|.|.|++++..+.......+...  ..+    .++|.|.+++.+|+|.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~~~----~~~L~i~~v~~~D~G~Y   81 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR--ENG----VHSLIIEPVTSRDAGIY   81 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEEC--TTS----CEEEEESSCCGGGCSBB
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEe--cCC----eEEEEEeeCCcccCEEE
Confidence            578999999999999999999999999999999999998877654333332222  221    24599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|..+.++.|.|...+..
T Consensus        82 ~C~a~n~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           82 TCIATNRAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             CEEEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEEECCCCEEEEEEEEEEeCCCCC
Confidence            9999999999999999999887654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.32  E-value=9.1e-13  Score=141.94  Aligned_cols=177  Identities=17%  Similarity=0.264  Sum_probs=108.6

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-  342 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-  342 (902)
                      .|.+.|..+.. .....+.+..+|.+..+..+..+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+.......... 
T Consensus        78 ~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (305)
T 2nzi_A           78 QVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT  156 (305)
T ss_dssp             EEEEEETTEEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC
T ss_pred             EEEEEcCCCCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc
Confidence            45555554432 2223444555565544444444567889999999999999999999999999776553322211111 


Q ss_pred             ccCCcEEEEe-eeeecCceeEEeecCC------CCEEEE--c---Cceeee--ecCceEEEEEEe--------------e
Q psy12803        343 VASSTLNFTR-INRINMGAYMCLADNV------PPQILI--R---NRRVGV--PIGRTATLECEV--------------E  394 (902)
Q Consensus       343 ~~~~sL~I~~-Vt~~DsG~YtC~A~N~------~P~i~~--~---p~~~~v--~~G~~v~L~C~a--------------~  394 (902)
                      ....+|.|.+ ++.+|+|.|+|.|.|.      ...+.+  .   +....+  ..+..+.|.|..              .
T Consensus       157 ~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~  236 (305)
T 2nzi_A          157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE  236 (305)
T ss_dssp             SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEE
T ss_pred             CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEE
Confidence            1335899999 9999999999999991      000110  0   111111  234455555543              2


Q ss_pred             ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        395 AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       395 g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ..+.+...|.+..              ...      ...|.|.++...|.|.|+|.|.|.+|....+
T Consensus       237 ~~~~~~~~w~~~~--------------~~~------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          237 KCATTAERWLRVG--------------QAR------ETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             EEETTSCCEEEEE--------------EES------SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             EecCCCCccEECc--------------ccc------CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence            2222233332211              111      1249999999999999999999999976533

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.32  E-value=7.9e-13  Score=139.87  Aligned_cols=152  Identities=15%  Similarity=0.180  Sum_probs=102.2

Q ss_pred             EEcCCeEEEEEecCCC---C-CCceEEecCCCcccccCCccceec------cCCcEEEEeeeeecCceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGH---P-KPSIIWKTSENKPITLGSWKDSAV------ASSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~---P-~p~v~W~k~~~~~~~~~~~~~~~~------~~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +..|++++|.|.+.+.   | ..+|+|+|++..+...........      ..+.|.|..+..+|.|.|+|+|.|     
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence            4569999999999995   3 347999998766532111011111      123677777777889999999998     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                   .+|.+.+.+......+|+.++|.|.+.++ |.+ .|.|++++..+...  .........++++...+
T Consensus       116 ~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~--~~~~~~~~~dgt~~~~s  193 (240)
T 4acp_A          116 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY--KATPPVLDSDGSFFLYS  193 (240)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE--EECCCEECTTSCEEEEE
T ss_pred             cccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCc--CccCceECCCCCEEEEE
Confidence                         12333332222222358899999999984 654 79999987664211  11112224567788888


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .|.|......|.+.|+|.|.+..-
T Consensus       194 ~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          194 KLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEChHHhCCCCEEEEEEEECCC
Confidence            999988877789999999999753

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.32  E-value=5.5e-12  Score=112.12  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=73.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++  ..+..  ...+... .      ..++|.|.+++.+|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~--~~~~~~~-~------~~~~L~i~~~~~~D~G~   72 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP--ELLVDAK-S------STTSIFFPSAKRADSGN   72 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCST--TSEEEEE-T------TEEEEECTTBCGGGCEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCC--cEEEEec-C------CEEEEEECCCChhcCEE
Confidence            688877788889999999999999999999999999988  55422  2222211 1      13569999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEee
Q psy12803        447 YRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |+|.|.|..|..+.++.|.|.
T Consensus        73 Y~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           73 YKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEcCCCeEEEEEEEEEC
Confidence            999999999999999998873

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.31  E-value=7.9e-12  Score=112.95  Aligned_cols=94  Identities=23%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+....  ++.+.....     ..+|.|.+++.+|+|.|+
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~--~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~   80 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS--KIHYTNTSG-----VLTLEILDCHTDDSGTYR   80 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCS--SEEEEEETT-----EEEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC--CEEEEECCC-----EEEEEEcCCCcccCEEEE
Confidence            5788888888999999999999999999999999999887664433  333332221     346999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeecC
Q psy12803        449 CISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~~  469 (902)
                      |.|.|..|..+.++.|.|...
T Consensus        81 C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           81 AVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEeCCCcEEEEEEEEEECC
Confidence            999999999999999998754

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.31  E-value=9.4e-12  Score=115.95  Aligned_cols=100  Identities=20%  Similarity=0.285  Sum_probs=81.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.+.|.|.|.|++++..+... ..++.+.....+    .++|.|.+++.+|+|.|
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~-~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y   88 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN-TDRISLYQDNTG----RVTLLIKDVNKKDAGWY   88 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCC-BTTEEEEECTTC----EEEEEEEEECGGGCEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCC-CCeEEEEeCCCC----eEEEEECCCCcccCEEE
Confidence            4688888888999999999999999999999999999988666432 233444333322    24699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|..+.++.|.|..++..
T Consensus        89 ~C~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           89 TVSAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCSCC
T ss_pred             EEEEEcCCCeEEEEEEEEEeCCCCC
Confidence            9999999999999999999876654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=7e-12  Score=112.77  Aligned_cols=93  Identities=28%  Similarity=0.397  Sum_probs=77.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+... ..++.+.  ..+      +|.|.+++.+|+|.|
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~--~~~------~L~i~~v~~~d~G~Y   77 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRATIQ--EQG------TLQIKNLRISDTGTY   77 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSS-CSSCEEC--TTC------CEEEESCCTTTCCEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-CCCEEEc--CCC------EEEEccCCcccCEEE
Confidence            4788888888899999999999999999999999999988776532 2233222  222      399999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecC
Q psy12803        448 RCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      +|.|.|..|..+.++.|.|.++
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           78 TCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EEEEECSSCCCBCCEEEEEESC
T ss_pred             EEEEEcCCCCEEEEEEEEEecC
Confidence            9999999999999999998864

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.29  E-value=2e-11  Score=149.13  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=117.9

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCcccccCCcccee----ccCCcEEEEeeeeecCceeEEeecC-------CCCEEEE
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA----VASSTLNFTRINRINMGAYMCLADN-------VPPQILI  374 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N-------~~P~i~~  374 (902)
                      ..++.|.|.+.|.|.|.+.|.|++............+    ..+.+|.|..+...|.|.|.|....       .+|.|. 
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-  169 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-  169 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-
Confidence            4589999999999999999999887653222111111    2233688999999999999986554       567776 


Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEE-EE--ecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRY-WE--FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~-W~--k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      .+.++.+.+|++++|.|.+.|.|.|.+. |+  +++..+....   .... .   .....++|.|.+++.+|+|.|+|.|
T Consensus       170 ~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~---~~~~-~---~~~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE---IKVT-S---SRRFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE---EEEC-C---SSEEEEEEEECSCCTTTCEEEEEEE
T ss_pred             cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc---eEEe-c---cccceEEEEEcccccccCeEEEEEE
Confidence            5667889999999999999999999988 87  4554443211   1111 1   1123467999999999999999999


Q ss_pred             EeCCce-eEEEEEEEeecCCCC
Q psy12803        452 KNEVDI-AKGSLILFESNAKTP  472 (902)
Q Consensus       452 ~N~~G~-~~~s~~L~V~~~p~~  472 (902)
                      .|..|. .+..+.|.|..+|.+
T Consensus       243 ~n~~G~~~s~~~~l~V~~~P~~  264 (731)
T 2v5y_A          243 RTEGGVGISNYAELVVKEPPVP  264 (731)
T ss_dssp             EETTEEEECCCEEEEEECCCCB
T ss_pred             ECCCCCcceeeEEEEEecCCCC
Confidence            999998 677788888876543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.27  E-value=1.3e-11  Score=120.73  Aligned_cols=99  Identities=24%  Similarity=0.306  Sum_probs=79.9

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+...  .++.+.....+    .++|.|.+++.+|+|.|
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~--~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y  113 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES--RHFQIDYDEEG----NCSLTISEVCGDDDAKY  113 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS--SSEEEEECTTC----EEEEEESSCCGGGCEEE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC--CcEEEEECCCC----eEEEEECCCChhcCEEE
Confidence            6788988888899999999999999999999999999988766433  33333322221    24699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|....++.|.|..++..
T Consensus       114 ~C~a~N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          114 TCKAVNSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             EEEEEETTEEEEEEEEEEEECC---
T ss_pred             EEEEEECCCeEEEEEEEEEeCcCcC
Confidence            9999999999999999999876654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.26  E-value=2.2e-11  Score=108.88  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=76.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+...  .++.+.....     .++|.|.+++.+|+|.|+
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~   78 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG--GKYKLSEDKG-----GFFLEIHKTDTSDSGLYT   78 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSS--SSEEEEEETT-----EEEEEECSCCGGGCEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC--CCEEEEEeCC-----EEEEEECCCCcccCEEEE
Confidence            578888888899999999999999999999999999987666433  3333332221     245999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeec
Q psy12803        449 CISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|.|..|..+.++.|.|..
T Consensus        79 C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           79 CTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCcEeEEEEEEEEe
Confidence            99999999999999998863

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=7.4e-12  Score=116.44  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=79.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ...++.....  +      +|.|.+++.+|+|.|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~-~~~~~~~~~~--~------~L~i~~v~~~D~G~Y   77 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-QDSRIKQLEN--G------VLQIRYAKLGDTGRY   77 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT-TSTTEEEEET--T------EEEEESCCGGGCCCE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC-CCCeEEEccC--C------EEEEccCCcCCCEEE
Confidence            467787788888999999999999999999999999998776643 2333333222  2      499999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|....++.|.|...+.+
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           78 TCIASTPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EEEEECSSCEEEEECCEEEECCSCC
T ss_pred             EEEEEcCCCcEEEEEEEEEEeCCCC
Confidence            9999999999999999999876544

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=6.3e-12  Score=115.26  Aligned_cols=100  Identities=16%  Similarity=0.203  Sum_probs=81.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.|.|++++..+.. ...++.+.....+    .++|.|.+++.+|+|.|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y   81 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-KSDHYTIQRDLDG----TCSLHTTASTLDDDGNY   81 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-TCSSEEEEECTTC----EEEEEESSCCTTTCSCC
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-CCCeEEEEECCCc----EEEEEECCCChhhCEEE
Confidence            467777778888999999999999999999999999998776643 2334444333222    24699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|..+..+.|.|...+..
T Consensus        82 ~C~a~N~~g~~~~~~~l~V~~~~~~  106 (110)
T 2dm2_A           82 TIMAANPQGRISCTGRLMVQAVNSG  106 (110)
T ss_dssp             EEEEECTTCCEEECCCEEEECCSCC
T ss_pred             EEEEEECCCeEEEEEEEEEECCCCC
Confidence            9999999999999999999876654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.26  E-value=2.5e-11  Score=110.67  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=69.2

Q ss_pred             ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ..+..+.|.|.+.|.|.|.++|++++..+.........+...  ......++|.|.+++.+|+|.|+|+|.|.+|.++.+
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   91 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT--NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEE--CSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEec--CCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence            457889999999999999999999887765433221222221  222346779999999999999999999999999999


Q ss_pred             EEEEeecCCC
Q psy12803        462 LILFESNAKT  471 (902)
Q Consensus       462 ~~L~V~~~p~  471 (902)
                      +.|.|...|.
T Consensus        92 ~~l~V~~~P~  101 (103)
T 1wwb_X           92 ISAHFMGWPG  101 (103)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEEECCCCC
Confidence            9999987654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.25  E-value=2.2e-11  Score=115.71  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeecc---CCceEEEEecCCeeee-cCCceEEEee-cCCCceeeEeEEEEeccCCCCC
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAF---PLSVRYWEFIDGTLIE-HDGVKYSISD-VDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~---P~P~v~W~k~~~~l~~-~~~~~~~~~~-~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      +.|...+.++.+.+|++++|.|.+.+.   |.|.|.|+|+...... ....++.+.. .......+..+|.|.+++.+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            557778889999999999999999875   8999999985321111 1123333321 1111122456799999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeec
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|+|+|.|..|..++++.|.|..
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999998

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.24  E-value=4e-11  Score=109.92  Aligned_cols=99  Identities=19%  Similarity=0.261  Sum_probs=73.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeeeec-CCceEEEeec-CCCceeeEeEEEEeccCCCC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLIEH-DGVKYSISDV-DKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~~~-~~~~~~~~~~-~~~s~~~~stL~I~~V~~~D  443 (902)
                      .|.|...+..+.+.+|++++|.|.+.+.|.   |.|.|++++...... ...++.+... .........+|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            467777888899999999999999999998   999999876332211 1122222110 00011234679999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEee
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|+|.|.|..|..++++.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999999986

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.24  E-value=2.3e-11  Score=130.19  Aligned_cols=168  Identities=17%  Similarity=0.310  Sum_probs=106.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCc--c--c-cc-C-----------Cccceec-----cCCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENK--P--I-TL-G-----------SWKDSAV-----ASSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~--~--~-~~-~-----------~~~~~~~-----~~~sL~I  350 (902)
                      +..+..+.+.+|++|+|.|.+.+  .....+.|+|....  +  + .. .           ..+....     .+.+|+|
T Consensus        27 v~q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  106 (267)
T 3u1s_H           27 LVQSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMEL  106 (267)
T ss_dssp             EEECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEE
T ss_pred             EEeeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEE
Confidence            34455678999999999999865  33567999984321  1  1 00 0           1122221     1225999


Q ss_pred             EeeeeecCceeEEeecC-------------------------------------------CCCEEEEcCceeeeecCceE
Q psy12803        351 TRINRINMGAYMCLADN-------------------------------------------VPPQILIRNRRVGVPIGRTA  387 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N-------------------------------------------~~P~i~~~p~~~~v~~G~~v  387 (902)
                      .+++.+|+|.|.|.+.+                                           .+|.+........+.+|+.+
T Consensus       107 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~  186 (267)
T 3u1s_H          107 RGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTA  186 (267)
T ss_dssp             CSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEE
T ss_pred             CCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcE
Confidence            99999999999999851                                           11222211111123478999


Q ss_pred             EEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803        388 TLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       388 ~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~  465 (902)
                      +|.|.+.+. | .+.+.|  ++..+.. ...........++.+...++|.|.....+| +.|+|.|.|..........|.
T Consensus       187 ~l~C~~~~~~p~~~~v~W--~~~~~~~-~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  262 (267)
T 3u1s_H          187 ALGCLVKDYFPEPVTVSW--NSGALTS-GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  262 (267)
T ss_dssp             EEEEEEEEEBSSCCEEEE--GGGTBCT-TEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEeEEECCCeEEEE--CCcccCC-CEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcc
Confidence            999999874 5 457999  4433311 101111122445677788899999998889 999999999887666555554


Q ss_pred             e
Q psy12803        466 E  466 (902)
Q Consensus       466 V  466 (902)
                      +
T Consensus       263 ~  263 (267)
T 3u1s_H          263 P  263 (267)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.22  E-value=1e-11  Score=113.07  Aligned_cols=96  Identities=22%  Similarity=0.309  Sum_probs=67.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.+...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+......  ... ...      ++|.|.+++.+|+|.|
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~-~~~------~~L~i~~v~~~D~G~Y   79 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLK-DGN------RNLTIRRVRKEDEGLY   79 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTE--EEE-TTT------TEEEECSCCGGGCEEE
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCe--EEe-CCC------cEEEEeecCcccCEEE
Confidence            4677777778888999999999999999999999999988776543332  221 222      2499999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|....++.|.|..++..
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           80 TCQACSVLGCAKVEAFFIIEGAQEK  104 (108)
T ss_dssp             EEEEC----CEEEEEEEEEEC----
T ss_pred             EEEEEeCCCceEEEEEEEEeCCCcc
Confidence            9999999999999999999876543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.22  E-value=9.5e-11  Score=137.31  Aligned_cols=163  Identities=17%  Similarity=0.297  Sum_probs=105.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCC----CceEEecCC--Ccc--cc-c-----------CCccceec-----cCCcEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPK----PSIIWKTSE--NKP--IT-L-----------GSWKDSAV-----ASSTLNF  350 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~----p~v~W~k~~--~~~--~~-~-----------~~~~~~~~-----~~~sL~I  350 (902)
                      ..+..+.+.+|++|+|.|.+.+.+.    ..|.|+|..  ..+  +. .           ...+....     .+.+|.|
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL   84 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence            3456788999999999999987543    679999863  211  10 0           01222222     1248999


Q ss_pred             EeeeeecCceeEEeecCCCC-------------------EEEEc-----Cceee--------eecCceEEEEEEeecc-C
Q psy12803        351 TRINRINMGAYMCLADNVPP-------------------QILIR-----NRRVG--------VPIGRTATLECEVEAF-P  397 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~~P-------------------~i~~~-----p~~~~--------v~~G~~v~L~C~a~g~-P  397 (902)
                      .+++.+|+|.|.|.+.+...                   .+.+.     +..+.        ...++.++|.|.+.+. |
T Consensus        85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence            99999999999999876320                   11111     00111        1235789999999987 7


Q ss_pred             Cc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803        398 LS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL  462 (902)
Q Consensus       398 ~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~  462 (902)
                      .| .|.|++++.......   .......++.+...++|.|..+..+ .|.|+|.|.|..+.....+
T Consensus       165 ~p~~v~W~~~~~~~~~~~---~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          165 TSVTVTWYMGTQSQPQRT---FPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             CceEEEEEcCcccCceEe---cCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence            65 899988543211000   0011123345667788999988877 9999999999998776554

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.21  E-value=7.5e-11  Score=121.24  Aligned_cols=150  Identities=21%  Similarity=0.305  Sum_probs=93.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccccc--------CCccceecc------CCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPITL--------GSWKDSAVA------SSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~~~--------~~~~~~~~~------~~sL~I~~Vt~~DsG~  360 (902)
                      .+..+.+.+|++|+|.|.+.+.+ +.|.|+|...  .+...        ...+.....      ..+|+|.+++.+|+|.
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~   85 (207)
T 1ypz_E            7 SPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGT   85 (207)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEE
Confidence            45568899999999999998754 4799998542  11110        112222221      2479999999999999


Q ss_pred             eEEeecCCC-----------------CEEEEc-------CceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecC
Q psy12803        361 YMCLADNVP-----------------PQILIR-------NRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHD  414 (902)
Q Consensus       361 YtC~A~N~~-----------------P~i~~~-------p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~  414 (902)
                      |.|.+.+..                 -.+.+.       +..+.+.. ..++|.|.+.+. |. +.|.|+++ ..+.. .
T Consensus        86 Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~l~~-~  162 (207)
T 1ypz_E           86 YFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK-NGTNVACLVKDFYPKEVTISLRSS-KKIVE-F  162 (207)
T ss_dssp             EEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEE-ETTEEEEEEEEESSSCCEEEEECS-SEEEE-C
T ss_pred             EEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeC-CCCeEEEEEeeEeCCCeEEEEecC-CcccC-C
Confidence            999997731                 112221       11222222 247999999876 54 79999988 65543 2


Q ss_pred             CceEEEeecCCCceeeEeEEEEeccC-CCCCeEEEEEEEeCCcee
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNVN-ISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V~-~~DsG~YtC~A~N~~G~~  458 (902)
                      ......  ..++.      +.+.... .+|.|.|+|.|.|..+..
T Consensus       163 ~~~~~~--~~~g~------y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          163 DPAIVI--SPSGK------YSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             CCEEEE--CTTSS------EEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             ccceEE--cCCCc------EEEEEeecccCCCcEEEEEEECCccE
Confidence            222211  23344      2232333 367899999999988654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.21  E-value=5.8e-11  Score=112.72  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=69.5

Q ss_pred             ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ..+..+.|.|.+.|+|.|+|+|++++..+.........+...........++|.|.+++.+|+|.|+|+|.|.+|.++++
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            35678999999999999999999998777543333333322101111234679999999999999999999999999999


Q ss_pred             EEEEeecCCCC
Q psy12803        462 LILFESNAKTP  472 (902)
Q Consensus       462 ~~L~V~~~p~~  472 (902)
                      +.|.|...|..
T Consensus        93 ~~l~v~~~P~~  103 (126)
T 1he7_A           93 IMAAFMDNPFE  103 (126)
T ss_dssp             EEECCCSCTTS
T ss_pred             EEEEEEcCCCC
Confidence            99998876643

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=4.4e-11  Score=111.26  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             CCEEEE---cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILI---RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~---~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.|..   ....+.+.+|+++.|.|.+.|.|.|.+.|++++..+. .....+  ....     ..++|.|.+++.+|+|
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~--~~~~-----~~~~L~i~~~~~~D~G   92 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHV--RTSD-----FDTVFFVRQAARSDSG   92 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEE--EECS-----SEEEEEESSCCTTTCE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEE--EECC-----CeEEEEECCCChhcCE
Confidence            566654   2456789999999999999999999999999877663 222222  2111     1346999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      .|+|.|.|..|..+.++.|.|.+.|
T Consensus        93 ~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           93 EYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            9999999999999999999998754

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.8e-11  Score=108.59  Aligned_cols=90  Identities=19%  Similarity=0.306  Sum_probs=74.1

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+.... ...   ...      ..+|.|.+++.+|+|.|
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~-~~~---~~~------~~~L~i~~v~~~D~G~Y   79 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR-STC---EAG------VAELHIQDALPEDHGTY   79 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCC-CEE---ETT------EEEEEECSCCTTCCBCE
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccc-eEe---eCC------eEEEEECCCChhhCEEE
Confidence            46888888888999999999999999999999999999887664321 111   111      24599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|..+.++.|.|.
T Consensus        80 ~C~a~N~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           80 TCLAENALGQVSCSAWVTVH   99 (99)
T ss_dssp             EEEEECSSCEEEEECCEEEC
T ss_pred             EEEEEECCCeEEEEEEEEEC
Confidence            99999999999998888773

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.19  E-value=2.7e-11  Score=108.81  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             CCEEEEcC----ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        369 PPQILIRN----RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       369 ~P~i~~~p----~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      +|.|...+    ..+.+.+|+++.|.|.+.+.|.|.+.|++++..+...... .+... ...      ++|.|.+++.+|
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~~~------~~L~i~~v~~~D   76 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-NQH------WSLIMESVVPSD   76 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-GGG------TEEEECSCCGGG
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe-cCe------EEEEEccCCcCC
Confidence            45665433    4577889999999999999999999999987766433221 11111 111      249999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEee
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|+|.|.|..|..+.++.|.|.
T Consensus        77 ~G~Y~C~a~N~~g~~~~~~~l~Vv  100 (100)
T 3caf_A           77 KGNYTCVVENEYGSINHTYHLDVV  100 (100)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEEEEeCCCEEEEEEEEEEC
Confidence            999999999999999999988873

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.19  E-value=9.4e-11  Score=130.65  Aligned_cols=187  Identities=14%  Similarity=0.129  Sum_probs=114.7

Q ss_pred             cccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec
Q psy12803        264 ICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV  343 (902)
Q Consensus       264 ~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~  343 (902)
                      .|.+.|..+... ....+.+..+|.+..     .+..+.+.+|+++.|.|.+.+.|.+.+.|+|++..+......+....
T Consensus        79 ~C~a~n~~g~~~-~~~~l~V~~~P~~~~-----~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~  152 (389)
T 2jll_A           79 DCEAASRIGGHQ-KSMYLDIEYAPKFIS-----NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTY  152 (389)
T ss_dssp             EEEEECSSCEEE-EEEEEEEEEEEEECC-----SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEE
T ss_pred             EEEEEeCCCCcc-eEEEEEEEeCCEEec-----CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEe
Confidence            455555554432 223444555555432     22334788999999999999999999999998765543322222222


Q ss_pred             ---cCCcEEEEeeeeecCceeEEeecCC------CCEEEE-----cCceee--eecCceEEEEEEee----ccCCc--eE
Q psy12803        344 ---ASSTLNFTRINRINMGAYMCLADNV------PPQILI-----RNRRVG--VPIGRTATLECEVE----AFPLS--VR  401 (902)
Q Consensus       344 ---~~~sL~I~~Vt~~DsG~YtC~A~N~------~P~i~~-----~p~~~~--v~~G~~v~L~C~a~----g~P~P--~v  401 (902)
                         ...+|.|.+++.+|+|.|+|.|.|.      ...+..     .+..+.  ......+.|.|...    +.|..  .+
T Consensus       153 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v  232 (389)
T 2jll_A          153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV  232 (389)
T ss_dssp             ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEE
T ss_pred             ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEE
Confidence               2347999999999999999999991      111111     111121  22356788888742    22433  46


Q ss_pred             EEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        402 YWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       402 ~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      .|.+.+...     .. .......     ...|.|.++...|.+.|+|.|.|..|....+..+.+.
T Consensus       233 ~~~~~~~~~-----~~-~~~~~~~-----~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~  287 (389)
T 2jll_A          233 DVKEVASEI-----WK-IVRSHGV-----QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ  287 (389)
T ss_dssp             EEEETTCSC-----CE-EEECSTT-----CSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             EEEECCCcc-----cE-EeeccCC-----cceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEE
Confidence            776654321     11 1111111     1249999999999999999999999976544444443

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.18  E-value=1e-10  Score=104.63  Aligned_cols=92  Identities=22%  Similarity=0.274  Sum_probs=73.1

Q ss_pred             EEEEcCceeeeecCceEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      .+...+.++.+.+|+++.|.|.+.+. |.|.+.|++++..+...  .++.+.... +    .++|.|.+++.+|+|.|+|
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~--~~~~~~~~~-~----~~~L~i~~v~~~D~G~Y~C   75 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS--EKYEITYED-G----VAILYVKDITKLDDGTYRC   75 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS--SSEEEEEET-T----EEEEEECSCCGGGCEEEEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC--CCEEEEEcC-C----eEEEEEecCChhhCeEEEE
Confidence            34456778889999999999999997 99999999987766432  333332211 1    3459999999999999999


Q ss_pred             EEEeCCceeEEEEEEEeecC
Q psy12803        450 ISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V~~~  469 (902)
                      .|.|..|....++.|.|.+.
T Consensus        76 ~a~n~~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           76 KVVNDYGEDSSYAELFVKGV   95 (97)
T ss_dssp             EEECSSCEEEEEEEEEETTT
T ss_pred             EEECCCCeEeEEEEEEEEec
Confidence            99999999999999998753

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=3.8e-11  Score=112.76  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc---CCceEEEEecCCeeee-cCCceEEEeec-CCCceeeEeEEEEeccCCCC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF---PLSVRYWEFIDGTLIE-HDGVKYSISDV-DKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~---P~P~v~W~k~~~~l~~-~~~~~~~~~~~-~~~s~~~~stL~I~~V~~~D  443 (902)
                      .+.|+..|.++.+.+|++++|.|.+.+.   |.|.|+|+|+...... ....++.+... .........+|.|.+|+.+|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4567778889999999999999999875   7999999986422211 11233333211 11122245679999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      +|.|+|+|.|..|..++.+.|.|..+
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            99999999999999999999999864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.17  E-value=4.4e-11  Score=106.86  Aligned_cols=87  Identities=15%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.| |.+.|++++..+...  .++.+.   .      .+|.|.+++.+|+|.|+
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~--~~~~~~---~------~~L~i~~~~~~D~G~Y~   76 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES--NRTRIT---G------EEVEVRDSIPADSGLYA   76 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC--SSEEEC---S------SEEEESSCCGGGSEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC--CCEEEe---C------CEEEECCCChHHCEEEE
Confidence            55666667788899999999999999998 899999977666432  233332   1      24999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.|..|..+.++.|.|.
T Consensus        77 C~a~n~~g~~~~~~~l~V~   95 (95)
T 2ckn_A           77 CVTSSPSGSDTTYFSVNVS   95 (95)
T ss_dssp             EEEEETTEEEEEEEEEEEC
T ss_pred             EEeccCCCcEEEEEEEEEC
Confidence            9999999999999888773

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.17  E-value=1.7e-11  Score=112.33  Aligned_cols=93  Identities=20%  Similarity=0.346  Sum_probs=77.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+..  ..++.+....     ...+|.|.+++.+|+|.|
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~--~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y   85 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--SARHQVTTTK-----YKSTFEISSVQASDEGNY   85 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTT--CSSEEEEECS-----SEEEEEECCCCSSCCSEE
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCC--CCCEEEEECC-----CEEEEEECcCCchhCEEE
Confidence            568888899999999999999999999999999999998876643  2233333221     134699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|..+.++.|.|.
T Consensus        86 ~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           86 SVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             EECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEEEEEE
Confidence            99999999999999999885

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.16  E-value=1e-11  Score=116.30  Aligned_cols=103  Identities=20%  Similarity=0.343  Sum_probs=79.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC-e
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF-D  445 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds-G  445 (902)
                      .+|.|.. +..+.+.+|+++.|.|.+.+.|.|. |.|++++..+......++.+...... ....++|.|.+++.+|+ |
T Consensus        13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~~G   90 (122)
T 2cry_A           13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-EGVISTLTISNIVRADFQT   90 (122)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEET-TEEEEEEECTTCCHHHHHS
T ss_pred             cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEEcCCChhhCCc
Confidence            5788877 7778899999999999999999997 99999988775422233333211100 12356799999999999 9


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|+|.|.|.+|.....+.|.|......
T Consensus        91 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~  117 (122)
T 2cry_A           91 IYNCTAWNSFGSDTEIIRLKEQGSEMS  117 (122)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCSSCC
T ss_pred             eEEEEEECCCCeEEEEEEEEECCCCCC
Confidence            999999999999999999998865443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=3e-11  Score=109.75  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=73.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+  .|.|.+.|++++..+...  .++.+.....     ..+|.|.+++.+|+|.|
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~--~r~~i~~~~~-----~~~L~I~~v~~~D~G~Y   76 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES--DRLKVVQKGR-----IHKLVIANALTEDEGDY   76 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC--SSEEEEECSS-----EEEEEESSCCGGGCSEE
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC--CcEEEEEeCC-----EEEEEECCCChhhCEEE
Confidence            35677778888999999999999999  899999999988776543  3333333221     24599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +|.|.|.  ..+.++.|.|.++|.
T Consensus        77 ~C~a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           77 VFAPDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             EEEESSS--CCCEEEEEEEECCSC
T ss_pred             EEEEcCC--CeeEEEEEEEeCCCC
Confidence            9999998  556778888876543

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=130.53  Aligned_cols=168  Identities=18%  Similarity=0.261  Sum_probs=107.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--------------CCceEEecCCCc----ccc--cC--------Ccc-c-------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--------------KPSIIWKTSENK----PIT--LG--------SWK-D-------  340 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--------------~p~v~W~k~~~~----~~~--~~--------~~~-~-------  340 (902)
                      .+..+.+.+|++|+|.|..+..+              ...|.|++....    ++.  .+        ... .       
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            45568899999999999976432              346899874211    110  00        000 0       


Q ss_pred             -----eeccCCcEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceee-eecCc-eEEEEEEeecc-CC
Q psy12803        341 -----SAVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVG-VPIGR-TATLECEVEAF-PL  398 (902)
Q Consensus       341 -----~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~-v~~G~-~v~L~C~a~g~-P~  398 (902)
                           ....+.+|+|.+++.+|+|.|.|.+.+              .+|.+...+.... +..|+ .++|.|.+.+. |.
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~  323 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPS  323 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSS
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCC
Confidence                 112346899999999999999999977              4555554443332 34676 79999999986 65


Q ss_pred             --ceEEEE-ecC--CeeeecCCce--EEEeecCCCceeeEeEEEEeccCCCCC-eEEEEEEEeCC---ceeEEEEEE
Q psy12803        399 --SVRYWE-FID--GTLIEHDGVK--YSISDVDKGSYQYIMQLNISNVNISDF-DTYRCISKNEV---DIAKGSLIL  464 (902)
Q Consensus       399 --P~v~W~-k~~--~~l~~~~~~~--~~~~~~~~~s~~~~stL~I~~V~~~Ds-G~YtC~A~N~~---G~~~~s~~L  464 (902)
                        +.|+|+ +++  +.........  .......++.+...++|.|...+.+|. +.|+|.+.|..   +..+.+++|
T Consensus       324 ~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL  400 (401)
T 3f8u_B          324 GGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL  400 (401)
T ss_dssp             TTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred             CCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence              789995 654  1111111111  011234567788888899887754455 49999999986   444555443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.13  E-value=2.5e-10  Score=114.44  Aligned_cols=100  Identities=26%  Similarity=0.362  Sum_probs=80.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ...++.+.....+    .++|.|.+++.+|+|.|
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y   77 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-DGLKYRIQEFKGG----YHQLIIASVTDDDATVY   77 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCC-CSSSEEEEEETTT----EEEEEECSCCGGGCSEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECcc-CCCcEEEEEcCCC----EEEEEECcCCHHhCEEE
Confidence            378899888899999999999999999999999999998766643 3333443332222    23599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|....++.|.|..++..
T Consensus        78 ~C~~~n~~g~~~~~~~l~V~~~p~~  102 (197)
T 2j8h_A           78 QVRATNQGGSVSGTASLEVEVPAKI  102 (197)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEECCCceeEEEEEEEcCCCcC
Confidence            9999999999999999988765543

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.11  E-value=1.7e-10  Score=103.38  Aligned_cols=89  Identities=19%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .++.|...+.++.+.+|++++|.|.+.+ |.+.+.|++++..+.....  +.+.....     ..+|.|.+++.+|+|.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~--~~i~~~g~-----~~~L~I~~v~~~D~G~Y   75 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPD--CEIIEDGK-----KHILILHNCQLGMTGEV   75 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTT--EEEEEETT-----EEEEEECSCCGGGCEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCC--EEEEEECC-----EEEEEECCCChhhCEEE
Confidence            3678888899999999999999999986 4588999998877654333  33332221     24599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeec
Q psy12803        448 RCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|.|.|.    ..++.|.|.+
T Consensus        76 ~C~a~n~----~~sa~L~V~~   92 (93)
T 1waa_A           76 SFQAANT----KSAANLKVKE   92 (93)
T ss_dssp             EEEETTE----EEEEEEEEEC
T ss_pred             EEEECCC----cEEEEEEEEc
Confidence            9999884    4667777764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.11  E-value=2e-10  Score=101.53  Aligned_cols=84  Identities=19%  Similarity=0.238  Sum_probs=68.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      ++.|...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+....          .      .+|.|.+++.+|+|.|+
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~   66 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET----------K------KLYMVPYVDLEHQGTYW   66 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC----------S------SEEEESSCCGGGCEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC----------C------CeEEECCCCHHhCEEEE
Confidence            4677888888899999999999999999999999999876543211          1      24999999999999999


Q ss_pred             EEEEeCCceeE-EEEEEEeec
Q psy12803        449 CISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~~-~s~~L~V~~  468 (902)
                      |.|.|..|... ..+.|.|.+
T Consensus        67 C~a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           67 CHVYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             EEEECSSCEEECCCEEEEEC-
T ss_pred             EEEEcCCCCEEeeeEEEEEeh
Confidence            99999999765 567777754

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.11  E-value=2.5e-10  Score=114.58  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceee--EeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQY--IMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~--~stL~I~~V~~~DsG  445 (902)
                      +|.|...+.++.+.+|+++.|.|.+. +.|.+.+.|++++..+......++.+....+....+  .++|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            67888999999999999999999999 999999999998776644322334443333322222  577999999999999


Q ss_pred             EEEEEEEeCCceeEEE-EEEEeecCC
Q psy12803        446 TYRCISKNEVDIAKGS-LILFESNAK  470 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s-~~L~V~~~p  470 (902)
                      .|+|.|.|..+..... +.|.|..+|
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p  107 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLP  107 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSC
T ss_pred             EEEEEEEeCCCceecccEEEEEecCC
Confidence            9999999998876443 788887654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.10  E-value=3.1e-10  Score=102.76  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=72.6

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC------ceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG------VKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~------~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      +|.+...+.++.+.+|++++|.|.+.+.|.+.+.|++++........      .++.+.....    ...+|.|.+++.+
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~   81 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISVSDVSLS   81 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESS----SEEEEEECSCCGG
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCC----CcEEEEECCCChh
Confidence            35566667788999999999999999999999999987763222111      1333221111    1356999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|+|.|.| .+..+..+.|.|..+|
T Consensus        82 D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           82 DEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             GCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             HCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999999 8989999999988653

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.10  E-value=2e-10  Score=104.09  Aligned_cols=93  Identities=19%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      +.|...+.++.+.+|++++|.|.+.+ |.+.+.|++++..+......++.+.....     ..+|.|.+++.+|+|.|+|
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A            8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK-----KHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             CCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETT-----EEEEEEEEECTTTCSEEEE
T ss_pred             ceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCC-----EEEEEECCCCcccCEEEEE
Confidence            34666778889999999999999987 77999999988776544322444433221     3469999999999999999


Q ss_pred             EEEeCCceeEEEEEEEeecCCCC
Q psy12803        450 ISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|.|    .+.++.|.|...+.+
T Consensus        82 ~a~n----~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             EETT----EEEEEEEEEECCCSC
T ss_pred             EECC----CcEEEEEEEeCCCCC
Confidence            9988    577788888776543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.08  E-value=5.3e-11  Score=108.08  Aligned_cols=71  Identities=23%  Similarity=0.350  Sum_probs=57.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|+++.|.|.+.|.|.|.|+|+|++..+......+.....   ..+|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A           11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            456788999999999999999999999999987665443332332222   23799999999999999999998

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.07  E-value=2e-10  Score=117.33  Aligned_cols=97  Identities=18%  Similarity=0.161  Sum_probs=77.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc-CCCCCeE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV-NISDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V-~~~DsG~  446 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ............     .+.|.|.++ +.+|+|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~-~~~~~~~~~~~~-----~~~L~i~~v~~~~d~G~   78 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN-QRFEVIEFDDGS-----GSVLRIQPLRTPRDEAI   78 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC-TTEEEEEEGGGT-----EEEEEECSCCTTTTCEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC-CceeEEEEcCCC-----ceEEEEeccCCCCCCeE
Confidence            368888888899999999999999999999999999998766643 222221111111     346999999 5999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|.|..|....++.|.|...+
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~~  102 (212)
T 2yd6_A           79 YECVASNNVGEISVSTRLTVLRED  102 (212)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECGG
T ss_pred             EEEEEEcCCCcEEEEEEEEEeccC
Confidence            999999999999999999987653

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=3.5e-10  Score=101.87  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+..+.+.+|+.++|.|.+.+.| |.+.|++++..+....  ++.+.   .      .+|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~--~~~~~---~------~~L~i~~v~~~D~G~Y~C~a~n~   76 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRIT---G------EEVEVQDSVPADSGLYACVTSSP   76 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCS--SEEEC---S------SEEEETTCCTTTCEEEEEEEEET
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCC--cEEEE---C------CEEEEccCCHHHCEEEEEEEEeC
Confidence            34566788999999999999987 7999999887664322  33332   1      24999999999999999999999


Q ss_pred             CceeEEEEEEEeecCCCC
Q psy12803        455 VDIAKGSLILFESNAKTP  472 (902)
Q Consensus       455 ~G~~~~s~~L~V~~~p~~  472 (902)
                      .|.....+.|.|...++.
T Consensus        77 ~g~~~~~~~l~V~~~~~s   94 (99)
T 2cr3_A           77 SGSDTTYFSVNVSDALPS   94 (99)
T ss_dssp             TEEEEEEEEECBCSCCSC
T ss_pred             CceEEEEEEEEEecCCCC
Confidence            999999999998876543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.06  E-value=3.8e-10  Score=112.65  Aligned_cols=99  Identities=25%  Similarity=0.349  Sum_probs=79.9

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...  .++.+.....     .++|.|.+++.+|+|.|
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y   78 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS--RKYKMSSDGR-----THTLTVMTEEQEDEGVY   78 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC--SSEEEEESSS-----EEEEEEECCSGGGCEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC--ccEEEEeCCC-----EEEEEEecCCccCCEEE
Confidence            3678888888899999999999999999999999999988776443  2333332221     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTPV  473 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~~  473 (902)
                      +|.|.|..+....++.|.|...+...
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~p~~~  104 (197)
T 3lcy_A           79 TCIATNEVGEVETSSKLLLQATPQFH  104 (197)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEEC
T ss_pred             EEEEECCCCceeEEEEEEEEcCCCCC
Confidence            99999999999999999887765443

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=108.22  Aligned_cols=98  Identities=20%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC---ceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG---VKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~---~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+.....   .....  ..++. .....|.|.+++.+|+
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~i~~~~v~~~D~   84 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML--LPSGS-LFFLRIVHGRKSRPDE   84 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEE--CTTSC-EEESSCCCBTTBCSSC
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEE--ecCCc-EEEEEEEeCCCCcCcC
Confidence            468888888888999999999999999999999999998776643221   11111  11222 1122233446789999


Q ss_pred             eEEEEEEEeCCceeE-EEEEEEeec
Q psy12803        445 DTYRCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       445 G~YtC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      |.|+|.|.|..|... ..+.|.+..
T Consensus        85 G~Y~C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           85 GVYVCVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEEEEEeCccceEeeeEEEEhhh
Confidence            999999999999885 455665543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.06  E-value=6.2e-10  Score=103.43  Aligned_cols=85  Identities=15%  Similarity=0.047  Sum_probs=66.5

Q ss_pred             ceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803        385 RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL  464 (902)
Q Consensus       385 ~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L  464 (902)
                      ..+.|.|.+.|.|.|.+.|++++..+......++......   ....++|.|.+++.+|+|.|+|+|.|..|..++++.|
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l   97 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG---EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   97 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS---SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccC---ccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence            6678999999999999999998877655433333332211   1234579999999999999999999999999999999


Q ss_pred             EeecCCCC
Q psy12803        465 FESNAKTP  472 (902)
Q Consensus       465 ~V~~~p~~  472 (902)
                      .|...|..
T Consensus        98 ~v~~~P~~  105 (118)
T 1wwc_A           98 HFLKEPFP  105 (118)
T ss_dssp             CCSCCCCC
T ss_pred             EEccCCCc
Confidence            88876543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.06  E-value=4e-10  Score=114.99  Aligned_cols=99  Identities=22%  Similarity=0.381  Sum_probs=79.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC-CCCeE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~-~DsG~  446 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ...++.+.....+    .++|.|.+++. +|+|.
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~----~~~L~i~~v~~~~d~G~   79 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-TQSRYTVLEQPGG----ISILRIEPVRAGRDDAP   79 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCT-TSTTEEEEEETTT----EEEEEESSCCTTTTCSE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCC-CcceeEEEEcCCC----eEEEEEEecCCCCcCce
Confidence            478999999999999999999999999999999999998766542 2333333322222    24699999999 99999


Q ss_pred             EEEEEEeCCce-eEEEEEEEeecCCC
Q psy12803        447 YRCISKNEVDI-AKGSLILFESNAKT  471 (902)
Q Consensus       447 YtC~A~N~~G~-~~~s~~L~V~~~p~  471 (902)
                      |+|.|.|..|. .+..+.|.|...+.
T Consensus        80 Y~C~~~n~~g~~~~~~~~l~V~~~~~  105 (212)
T 2yd1_A           80 YECVAENGVGDAVSADATLTIYEGDK  105 (212)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEECTTC
T ss_pred             EEEEEEeCCCCeEEeeEEEEEecccC
Confidence            99999999998 78888998886543

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.06  E-value=8.5e-10  Score=102.76  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=69.3

Q ss_pred             CceeeeecCceEEEEEEeeccC--CceEEEEecCCeeee----cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDGTLIE----HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~~l~~----~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      +..+.+.+|++++|.|.+.+.|  .+.+.|++++..+..    ........   ........++|.|.+++.+|+|.|+|
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~DsG~Y~C   91 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS---GSEMKKFLSTLTIDGVTRSDQGLYTC   91 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE---ETTEEEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc---CCceeeEEEEEEECCCCcccCEEEEE
Confidence            3445889999999999999954  568999988774321    01111100   01111235679999999999999999


Q ss_pred             EEEeCCceeEEEEEEEeecCCCC
Q psy12803        450 ISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|.|..|....++.|.|.++|.+
T Consensus        92 ~a~n~~g~~~~~~~l~V~~~p~i  114 (122)
T 3s35_X           92 AASSGLMTKKNSTFVRVHEKPFV  114 (122)
T ss_dssp             EEECSSCEEEEEEEEEEEEEECC
T ss_pred             EEccCCCceEEEEEEEEeccCeE
Confidence            99999999999999999887655

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.06  E-value=7.2e-11  Score=108.68  Aligned_cols=74  Identities=26%  Similarity=0.463  Sum_probs=58.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecCC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +..+.++.+.+|+++.|.|.+.|.|.|.|+|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|.
T Consensus        17 ~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           17 LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            4456778999999999999999999999999998766544332222222 1237999999999999999999983

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.05  E-value=5.4e-10  Score=101.22  Aligned_cols=106  Identities=15%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             eeEEeecCCCCEEEEcCceeeeecCceEEEEEEeeccC--CceEEEEecCCeeeecCCce-EEEeecCCCceeeEeEEEE
Q psy12803        360 AYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDGTLIEHDGVK-YSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       360 ~YtC~A~N~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~~l~~~~~~~-~~~~~~~~~s~~~~stL~I  436 (902)
                      .|.|.. ..+|.|...+..+.+.+|++++|.|.+.+.|  .+.+.|++++..+....... .+............++|.|
T Consensus         2 ~~~c~~-~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   80 (112)
T 3so5_A            2 GFVCDD-FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRL   80 (112)
T ss_dssp             -------CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEE
T ss_pred             ceecCC-CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEE
Confidence            345532 3678999988888999999999999999654  57999999876653211111 1111111111223467999


Q ss_pred             eccCCCCCeEEEEEEEeCCcee-EEEEEEEe
Q psy12803        437 SNVNISDFDTYRCISKNEVDIA-KGSLILFE  466 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V  466 (902)
                      .+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        81 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           81 RNVEFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999999999999984 57777766

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.7e-10  Score=102.94  Aligned_cols=93  Identities=18%  Similarity=0.251  Sum_probs=73.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.+ |.+.+.|++++..+....  ++.+.....     .++|.|.+++.+|+|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~--~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   78 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQ--KYDVVCEGT-----MAMLVIRGASLKDAGEY   78 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSS--SEEEEEETT-----EEEEEESSCCTTTCSEE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCC--CEEEEECCC-----EEEEEECCCCcccCEEE
Confidence            4688888888899999999999999997 888999999887764433  333332221     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|    ...++.|.|..++..
T Consensus        79 ~C~a~n----~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           79 TCEVEA----SKSTASLHVEEKASG   99 (103)
T ss_dssp             EEECSS----CEEEEEEEECCCSSS
T ss_pred             EEEEcc----CCcEEEEEEeCCCCC
Confidence            999999    477888888776544

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.05  E-value=6.3e-10  Score=99.55  Aligned_cols=86  Identities=22%  Similarity=0.328  Sum_probs=67.0

Q ss_pred             CEEEE-cCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        370 PQILI-RNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       370 P~i~~-~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +.+.. .+..+.+.+|++++|.|.+. +.|.+.+.|++++......  ....          ...+|.|.+++.+|+|.|
T Consensus        10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~--~~~~----------~~~~L~i~~v~~~D~G~Y   77 (98)
T 1gl4_B           10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMD----------FNGILTIRNVQPSDAGTY   77 (98)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT--TEEE----------ETTEEEECSCCGGGCEEE
T ss_pred             cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc--eeec----------CCCEEEEeCCChhhCEEE
Confidence            34444 45667899999999999998 6899999999875443221  1111          122499999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|..+.++.|.|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           78 VCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EEEEECSSCEEEEEEEEEEC
T ss_pred             EEEecCCCCccccEEEEEEe
Confidence            99999999999999998875

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=4.2e-10  Score=104.28  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      ++.|...+.++.+.+|++++|.|.+.+.|.|.+.|++++..+.......+......      ..+|.|.+++.+|+|.|+
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~   86 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG------YHVLTLRQLALKDSGTIY   86 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTT------BCCBEECSCCTTTCEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCC------EEEEEEcCCChhhCEEEE
Confidence            45788888889999999999999999999999999998887754332222111111      124999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeecCCCC
Q psy12803        449 CISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |.    +|....++.|.|...+..
T Consensus        87 C~----~g~~~~~~~L~V~~~p~~  106 (115)
T 2cr6_A           87 FE----AGDQRASAALRVTEKPSV  106 (115)
T ss_dssp             EE----ETTEECCEEEEEECCSSC
T ss_pred             EE----ECCeeEEEEEEEECCCce
Confidence            99    467778889999876654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=105.20  Aligned_cols=92  Identities=20%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCc--eEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV--KYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~--~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      .+|.|...+.++.+.+|++++|.|.+.+.| +.+.|++++..+......  ++.+.....     ..+|.|.+++.+|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G   80 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGK-----RHILIFSDVVQEDRG   80 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSS-----EEEEECSSCCGGGCS
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCC-----EEEEEECCCChhhCE
Confidence            467888888889999999999999999999 999999998877554422  334332221     346999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      .|+|.|.|    .+.++.|.|..+
T Consensus        81 ~Y~C~a~n----~~~~~~l~V~~~  100 (101)
T 2edk_A           81 RYQVITNG----GQCEAELIVEEK  100 (101)
T ss_dssp             BEEEECSS----CEECCBEEEECC
T ss_pred             EEEEEEcC----CcEEEEEEEeCC
Confidence            99999988    445666777654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.04  E-value=2.4e-10  Score=100.51  Aligned_cols=81  Identities=14%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..++.+.+|+++.|.|.+.+ |.|.|.|++++..+....  ++.+.....     ..+|.|.+++.+|+|.|+|.|.|  
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~--~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~n--   72 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQG--RVQLEQAGA-----RQVLRVQGARSGDAGEYLCDAPQ--   72 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCS--SEEEEECSS-----CEEEEESSCSSTTCEEEEEECTT--
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccc--cEEEeecCC-----eEEEEecCCCCcccEEEEEEECC--
Confidence            45678999999999999966 889999999887775433  333333322     23599999999999999999855  


Q ss_pred             ceeEEEEEEEeec
Q psy12803        456 DIAKGSLILFESN  468 (902)
Q Consensus       456 G~~~~s~~L~V~~  468 (902)
                        .+.++.|.|.+
T Consensus        73 --~~~~a~l~V~e   83 (84)
T 2lu7_A           73 --DSRIFLVSVEE   83 (84)
T ss_dssp             --TCEEEEEEECC
T ss_pred             --EEEEEEEEEEC
Confidence              45677777764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.04  E-value=2.7e-10  Score=113.78  Aligned_cols=95  Identities=22%  Similarity=0.195  Sum_probs=76.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|++++|.|.+.+.|.+.+.|++++..+......++.+.....     .++|.|.+++.+|+|.|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG-----RAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETT-----EEEEEESSCCGGGCEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCC-----EEEEEECCCCcccCEEEE
Confidence            578888888899999999999999999999999999988776543322222221111     346999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeec
Q psy12803        449 CISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|.|..|....++.|.|..
T Consensus        80 C~~~n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           80 LKATNGSGQATSTAELLVKA   99 (194)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEcCCceEeEEEEEEEcc
Confidence            99999999998888888874

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.04  E-value=7.1e-10  Score=113.50  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=79.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.| ..+.++.+.+|+.+.|.|.+.+.|.|.|.|++++..+......++.+.....     .++|.|.+++.+|+|.|
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y   91 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS-----ASYLEVTPDSENDFGNY   91 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETT-----EEEEEECCCSGGGCEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCC-----eeEEEEecCChhhCeEE
Confidence            46777 4666788999999999999999999999999988776544334444433221     35699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|..|..+..+.|.|...|..
T Consensus        92 ~C~a~n~~g~~~~~~~l~v~~~P~~  116 (215)
T 3mtr_A           92 NCTAVNRIGQESLEFILVQADTPSS  116 (215)
T ss_dssp             EEEEECSSCEEEEEEEEEECCCCCC
T ss_pred             EEEEEECCCceEEEEEEEECCCCCC
Confidence            9999999999999999999876554

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.03  E-value=4.7e-09  Score=106.29  Aligned_cols=143  Identities=16%  Similarity=0.243  Sum_probs=93.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .++.+.|.+|+++.|.|.+.. +.|. +.|...-........    ......|.|.+|+. | |.|.|.+..        
T Consensus         5 ~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~----~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~   77 (185)
T 1iam_A            5 SPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLP----GNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAK   77 (185)
T ss_dssp             ESSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSS----SSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEE
T ss_pred             ECCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEecc----CCceeEEEEEecCc-C-CEEEEEEECCCCceEEE
Confidence            345577999999999999975 5555 677532111100000    01123699999983 4 999999976        


Q ss_pred             -------CCCEEEEcCceeeeecCceEEEEEEeecc-CCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 -------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 -------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                             .|..+.+.+....+.+|+.++|.|.+.+. |.+  +|.|++++..+....      . ....   ...+|++.
T Consensus        78 ~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~------~-~~~~---~~~tl~~~  147 (185)
T 1iam_A           78 TFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP------A-VGEP---AEVTTTVL  147 (185)
T ss_dssp             CEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE------C-CTTT---EEEEEEEE
T ss_pred             EEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc------C-CCcc---ccEEEEEe
Confidence                   44455555555568999999999999984 654  589998877664321      0 1111   12357766


Q ss_pred             ccCCCCCeEEEEEEEeCCc
Q psy12803        438 NVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G  456 (902)
                      ....+|...|+|.|.|.++
T Consensus       148 ~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          148 VRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             CCSSCSSCEEEEEEEEECG
T ss_pred             ceeccCCCeEEEEEEecCc
Confidence            5444444499999999887

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.8e-10  Score=104.77  Aligned_cols=70  Identities=24%  Similarity=0.417  Sum_probs=58.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+.|.|.+.+.|+|++..+.. ...+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus        14 ~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (118)
T 2eo9_A           14 GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIAST   83 (118)
T ss_dssp             CCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT-TSTTEEEEETTEEEEESCCGGGCCCEEEEEEC
T ss_pred             CCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC-CCCeEEEccCCEEEEccCCcCCCEEEEEEEEc
Confidence            45668899999999999999999999999997765533 23344455677999999999999999999999

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.02  E-value=1.1e-09  Score=98.57  Aligned_cols=91  Identities=18%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCCEEEEcCce-eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        368 VPPQILIRNRR-VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      .+|.|...+.+ +.+.+|+++.|.|.+. .|.+.+.|++++..+....  ++.+.....     ..+|.|.+++.+|+|.
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~--~~~~~~~~~-----~~~L~I~~~~~~D~G~   77 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPST--KYIFEHKGC-----QRILFINNCQMTDDSE   77 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBT--TEEEEEETT-----EEEEEEEEECTTTCCE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCC--CEEEEecCC-----EEEEEEcCCCcCcCEE
Confidence            36788877776 6788999999999998 7999999999887775433  333332221     2369999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|    |..+.++.|.|..+|
T Consensus        78 Y~C~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           78 YYVTA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EEEEE----TTEEEEEEEEECCSC
T ss_pred             EEEEE----CCceEEEEEEEecCC
Confidence            99999    778888999998765

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.02  E-value=2.5e-10  Score=101.95  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC-CcEEEEeeeeecCceeEEeecCC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +.+.+|+++.|.|.+.+ |.+.++|+|++..+............. .+|.|.+++.+|+|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            45578999999999976 889999999887765443322222222 37999999999999999999873

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3.2e-10  Score=102.67  Aligned_cols=93  Identities=11%  Similarity=0.195  Sum_probs=69.3

Q ss_pred             CCCEEEEcCce---eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRR---VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~---~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .+|.+...+..   +.+.+|++++|.|.+.+.|.+ +.|++++..+.......+.  ....     ..+|.|.+++.+|+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~--~~~~-----~~~L~I~~~~~~D~   77 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVK--MDGR-----KHRLILPEAKVQDS   77 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEE--EETT-----EEEEEESSCCTTTC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEE--eCCC-----EEEEEECCCChhhC
Confidence            35666666665   788999999999999999999 9999988766543333322  2111     34699999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |.|+|.|.|..+    .+.|.|..+|.+
T Consensus        78 G~Y~C~a~n~~~----~~~l~V~~~P~p  101 (104)
T 2e6p_A           78 GEFECRTEGVSA----FFGVTVQDPSGP  101 (104)
T ss_dssp             EEEEEECSSCCC----CEEEEEECCCCS
T ss_pred             EEEEEEECCceE----EEEEEEcCCCCC
Confidence            999999999744    567777765543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.01  E-value=3.6e-10  Score=102.88  Aligned_cols=91  Identities=19%  Similarity=0.169  Sum_probs=70.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.+.|.+ +.|++++..+.......  +.....     ..+|.|.+++.+|+|.|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~--~~~~~~-----~~~L~I~~v~~~D~G~Y   78 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRIT--ISHVGR-----FHKLVIDDVRPEDEGDY   78 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCE--EEEETT-----EEEEEESSCCTTTCSCE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEE--EEEeCC-----EEEEEECCCCcCCCEEE
Confidence            46888888899999999999999999999988 99999887775433333  222211     24599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeec
Q psy12803        448 RCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|.|.|.  ..+.++.|.|..
T Consensus        79 ~C~a~n~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           79 TFVPDGY--ALSLSAKLNFLE   97 (106)
T ss_dssp             EEEEETS--CCCCCBCEEEEC
T ss_pred             EEEEccC--CceEEEEEEEEE
Confidence            9999998  444555555553

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.99  E-value=2.3e-10  Score=102.27  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=57.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee--ccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--VASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +..+.++.+.+|++++|.|.+.|.|.+.+.|+|++..+..........  ....+|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   84 (99)
T 1g1c_A            9 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   84 (99)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEEC
Confidence            345667889999999999999999999999999876654333222211  22237999999999999999999983

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.99  E-value=4.2e-10  Score=100.50  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             CCEEEEcCcee--eeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRV--GVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~--~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      |+.|..+..++  .+.+|+++.|.|.+.+ |.|.+.|++++..+......+  +...+.     ..+|.|.+++.+|+|.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~--i~~~~~-----~~~L~I~~v~~~D~G~   75 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVV--LENEGP-----HRRLVLPATQPSDGGE   75 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCE--EEEETT-----EEEEEESSCCGGGCSE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeee--EEecCC-----eEEEEeCCCChhhcEE
Confidence            45555544443  4568999999999966 888999999988876544333  332221     2459999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEe
Q psy12803        447 YRCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V  466 (902)
                      |+|.|.|.    +.++.|.|
T Consensus        76 Y~C~a~n~----~~~~~ltV   91 (91)
T 2lvc_A           76 FQCVAGDE----CAYFTVTI   91 (91)
T ss_dssp             EEEECSSC----EEEEEEEC
T ss_pred             EEEEEcce----EEEEEEEC
Confidence            99999764    55666654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=7.9e-10  Score=99.19  Aligned_cols=71  Identities=21%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+..+.+.+|++++|.|.+.+.|.+.+.|+|++..+.. ...+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A           13 QGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG-RDPRATIQEQGTLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             ECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESS-SCSSCEECTTCCEEEESCCTTTCCEEEEEEEC
T ss_pred             eCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCC-CCCCEEEcCCCEEEEccCCcccCEEEEEEEEc
Confidence            355678899999999999999999999999998766542 23344455677999999999999999999998

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.98  E-value=1.8e-09  Score=103.03  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      .+|.|...+..+.+.+|++++|.|.+.+.|.|.+.|++++..+....        ..++.+.....  ....++|.|.++
T Consensus        20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v   97 (137)
T 3qr2_A           20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH--QHAASTISIDTL   97 (137)
T ss_dssp             -CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEES--SSEEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccc--cccceEEEECCC
Confidence            68999999999999999999999999999999999999776542210        11122111100  012457999999


Q ss_pred             CCCCCeEEEEEEEeCCcee
Q psy12803        440 NISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~  458 (902)
                      +.+|+|.|+|.|.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999999976

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.98  E-value=3e-09  Score=111.43  Aligned_cols=150  Identities=17%  Similarity=0.221  Sum_probs=92.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc--ccc--------CCccceec-----cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP--ITL--------GSWKDSAV-----ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~--~~~--------~~~~~~~~-----~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.+.+.+  ...+.|+|...  .+  +..        ...+....     ...+|.|.+++.+|
T Consensus         7 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   86 (229)
T 1hxm_A            7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (229)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhH
Confidence            45668899999999999998644  46799998532  11  110        01122221     12379999999999


Q ss_pred             CceeEEeecCCC-------C-------EEEEc-------CceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecC
Q psy12803        358 MGAYMCLADNVP-------P-------QILIR-------NRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHD  414 (902)
Q Consensus       358 sG~YtC~A~N~~-------P-------~i~~~-------p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~  414 (902)
                      +|.|.|.+.+..       .       .+.+.       +..+.+.. ..+.|.|.+.+. |.+ .|.|+++ ..+... 
T Consensus        87 sg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~-  163 (229)
T 1hxm_A           87 EGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITEF-  163 (229)
T ss_dssp             CEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEEC-
T ss_pred             CeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEecC-
Confidence            999999997631       1       12221       11222222 346899999976 554 8999988 665432 


Q ss_pred             CceEEEeecCCCceeeEeEEEEecc-CCCCCeEEEEEEEeCCce
Q psy12803        415 GVKYSISDVDKGSYQYIMQLNISNV-NISDFDTYRCISKNEVDI  457 (902)
Q Consensus       415 ~~~~~~~~~~~~s~~~~stL~I~~V-~~~DsG~YtC~A~N~~G~  457 (902)
                      .....  ...++.+.      +..+ ..+|.+.|+|.|.|..+.
T Consensus       164 ~~~~~--~~~dg~y~------~~~~~~~~~~~~ytC~V~h~~~~  199 (229)
T 1hxm_A          164 DPAIV--ISPSGKYN------AVKLGKYEDSNSVTCSVQHDNKT  199 (229)
T ss_dssp             CCEEE--ECTTSSEE------EEEEEEETTTTTCEEEEEETTEE
T ss_pred             ccceE--ECCCCcEE------EEECcccCCCCcEEEEEEeCCCC
Confidence            22221  23344432      2222 237889999999998743

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.98  E-value=1.1e-09  Score=97.35  Aligned_cols=84  Identities=18%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+..+.+.+|+++.|.|.+.+  .|.+.|++++..+...  .++.+.   .      .+|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~--~~~~~~---~------~~L~i~~~~~~D~G~Y~C~a~n~   73 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN--NRTVLI---G------EYLQIKGATPRDSGLYACTAART   73 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC--SSEEEE---T------TEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC--ceEEEe---C------CEEEECcCCcccCEEEEEEEccC
Confidence            566778999999999999987  4799999887666432  233322   1      24999999999999999999999


Q ss_pred             CceeEEEEEEEeecCCC
Q psy12803        455 VDIAKGSLILFESNAKT  471 (902)
Q Consensus       455 ~G~~~~s~~L~V~~~p~  471 (902)
                      .|..+.++.|.|.++..
T Consensus        74 ~g~~~~~~~l~V~~~~~   90 (95)
T 4hwu_A           74 VDSETWIFMVNVTDAAE   90 (95)
T ss_dssp             SCEEEEEEEEEECCC--
T ss_pred             CCcEEEEEEEEEeCCcc
Confidence            99999999999986543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.97  E-value=1.8e-09  Score=101.51  Aligned_cols=94  Identities=18%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ...+..+.+.+|++++|.|.+.+.|.+.+.|++.++.+...      ...++.+.....    ...+|.|.+++.+|+|.
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~   80 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA----NQLSITVPNVTLQDEGV   80 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEET----TEEEEEESSCCGGGCEE
T ss_pred             cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCC----CEEEEEECCCChHHCEE
Confidence            34556788999999999999999999999999777654321      122222221111    13569999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |+|.|.|. |.....+.|.|..+|.
T Consensus        81 Y~C~a~n~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           81 YKCLHYSD-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             EEEEEESS-SEEEEEEEEEEECC--
T ss_pred             EEEEEEcC-CCCcEEEEEEEEeCCC
Confidence            99999999 9999999999987654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.96  E-value=4.3e-10  Score=98.90  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=54.9

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecCC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..++.+.+|+++.|.|.+.+ |.|.|+|+|++..+............ ..+|.|.+++.+|+|.|+|.|.|.
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE
Confidence            35688999999999999977 89999999987766543332222222 237999999999999999999873

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.96  E-value=1.6e-09  Score=107.97  Aligned_cols=98  Identities=18%  Similarity=0.173  Sum_probs=74.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEe-cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEF-IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k-~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ++.+...+.++.+.+|+++.|.|.+.+.| .+.+.|++ ++..+.. ...++.+.....    ...+|.|.+++.+|+|.
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~   76 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDD----DSSTLTIYNANIDDAGI   76 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEEET----TEEEEEECSCCGGGCEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-CCCeEEEEECCC----CceEEEEccCCcccCEE
Confidence            46677888889999999999999999987 88999998 5554432 333333322111    13469999999999999


Q ss_pred             EEEEEEeCC-ceeEEEEEEEeecCCC
Q psy12803        447 YRCISKNEV-DIAKGSLILFESNAKT  471 (902)
Q Consensus       447 YtC~A~N~~-G~~~~s~~L~V~~~p~  471 (902)
                      |+|.|.|.. +..+..+.|.|..++.
T Consensus        77 Y~C~~~~~~~~~~~~~~~l~v~~~p~  102 (191)
T 1epf_A           77 YKCVVTAEDGTQSEATVNVKIFQKLM  102 (191)
T ss_dssp             EEEEEEETTTEEEEEEEEEEEECCSE
T ss_pred             EEEEEEcCCCcceEEEEEEEeecCce
Confidence            999999998 5667888888876543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.96  E-value=6.8e-10  Score=110.18  Aligned_cols=94  Identities=18%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+......++....  ..      +|.|.+++.+|+|.|+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~------~L~i~~~~~~d~G~Y~   73 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA--NN------NLQILNINKSDEGIYR   73 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT--TS------CEEETTCCGGGCEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec--CC------CEEEeeCCHhHCcEEE
Confidence            678888888999999999999999999999999999988776554444444332  22      2999999999999999


Q ss_pred             EEEEeCCcee--EEEEEEEeecCC
Q psy12803        449 CISKNEVDIA--KGSLILFESNAK  470 (902)
Q Consensus       449 C~A~N~~G~~--~~s~~L~V~~~p  470 (902)
                      |.|.|..+..  ...+.|.|..++
T Consensus        74 C~~~~~~~~~~~~~~~~l~v~~~p   97 (189)
T 2v5t_A           74 CEGRVEARGEIDFRDIIVIVNVPP   97 (189)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEE
T ss_pred             EEEEEcCCCceEEEEEEEEecCCC
Confidence            9999987543  355666665544

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=6.8e-10  Score=101.29  Aligned_cols=94  Identities=14%  Similarity=0.136  Sum_probs=71.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      .++.|...+.++.+.+|++++|.|.+.+.|. +.+.|++++..+.....  +.+.....     ..+|.|.+++.+|+|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r--~~~~~~~~-----~~~L~I~~v~~~D~G~   79 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSR--FQATRQGR-----KYILVVREAAPSDAGE   79 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSS--CEEEEETT-----EEEEEECSCCTTTCSC
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCC--EEEEEcCC-----EEEEEECCCCHHHCEE
Confidence            3556777788899999999999999999875 48999998887754333  33322221     2459999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |+|.|.|    ...++.|.|..+|..
T Consensus        80 Y~C~a~~----~~~~a~L~V~~~p~~  101 (104)
T 2eny_A           80 VVFSVRG----LTSKASLIVRERSGP  101 (104)
T ss_dssp             EEEEETT----EEEEECEEEECCCSS
T ss_pred             EEEEECC----eeEEEEEEEeCCCcC
Confidence            9999854    568888888876643

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.96  E-value=3.3e-10  Score=100.45  Aligned_cols=69  Identities=20%  Similarity=0.358  Sum_probs=54.6

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCC--CcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++.+.+|+++.|.|.+.|.|.|.++|+|++  ..+.. ...........+|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCST-TSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCC-cEEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            45688999999999999999999999999988  44322 11111122335799999999999999999998

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.95  E-value=1.4e-09  Score=101.16  Aligned_cols=83  Identities=24%  Similarity=0.394  Sum_probs=62.2

Q ss_pred             CcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc--CC--cEEEEeeee
Q psy12803        280 TSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SS--TLNFTRINR  355 (902)
Q Consensus       280 ~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~--sL~I~~Vt~  355 (902)
                      ......+|.|.     ..+.++.+.+|++++|.|.+.|.|.+.|.|+|++..+..... +.....  .+  +|.|.+++.
T Consensus         9 ~~~~~~~p~f~-----~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~   82 (116)
T 2kkq_A            9 SHEHKRAPMFI-----YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD-RISLYQDNTGRVTLLIKDVNK   82 (116)
T ss_dssp             CCCCCBCCCBS-----SCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBT-TEEEEECTTCEEEEEEEEECG
T ss_pred             ccCCCCCCeEE-----eCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCC-eEEEEeCCCCeEEEEECCCCc
Confidence            34455556553     345678999999999999999999999999998765543222 222222  22  799999999


Q ss_pred             ecCceeEEeecCC
Q psy12803        356 INMGAYMCLADNV  368 (902)
Q Consensus       356 ~DsG~YtC~A~N~  368 (902)
                      +|+|.|+|.|.|.
T Consensus        83 ~D~G~Y~C~a~N~   95 (116)
T 2kkq_A           83 KDAGWYTVSAVNE   95 (116)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCEEEEEEEEcC
Confidence            9999999999883

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.95  E-value=4.3e-10  Score=100.71  Aligned_cols=72  Identities=22%  Similarity=0.380  Sum_probs=57.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC--cEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS--TLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~--sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+............++  +|.|.+++.+|+|.|+|.|.|.
T Consensus        11 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (100)
T 2kdg_A           11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNR   84 (100)
T ss_dssp             CCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcC
Confidence            45668899999999999999999999999998766544333333333333  8999999999999999999883

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.94  E-value=2.1e-09  Score=95.85  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=67.3

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      .+.|...+.++.+.+|+++.|.|.+ +.|.+.+.|++++..+.....  +.+.....     ..+|.|.+++.+|+|.|+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~--~~~~~~~~-----~~~L~I~~v~~~D~G~Y~   79 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNK--YGLATEGT-----RHTLTVREVGPADQGSYA   79 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTT--CEEEEETT-----EEEEEESSCCTTCCSEEE
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCc--EEEEEcCC-----EEEEEEcCCCcccCEEEE
Confidence            3556667778899999999999999 889999999998887754333  23322221     245999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|    |....++.|.|.
T Consensus        80 C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           80 VIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             EEE----TTEEEEEEEEEE
T ss_pred             EEE----CCceEEEEEEEe
Confidence            999    567777888775

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=5.2e-10  Score=99.91  Aligned_cols=84  Identities=21%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+....          .      .+|.|.+++.+|+|.|
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y   72 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP----------S------PVLILPEIGPQDQGTY   72 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC----------C------SEEEEESCCTTTCEEE
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC----------C------CEEEECCCCcccCEEE
Confidence            35677777777889999999999999999999999999876653221          1      2499999999999999


Q ss_pred             EEEEEeCCcee--EEEEEEEee
Q psy12803        448 RCISKNEVDIA--KGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~--~~s~~L~V~  467 (902)
                      +|.|.|..+..  +..+.|.|.
T Consensus        73 ~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           73 SCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             ECEECCSSCCCEECCCEEEEEC
T ss_pred             EEEEEeCCCCcEEEEEEEEEEe
Confidence            99999976654  345555554

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.94  E-value=1.1e-09  Score=98.15  Aligned_cols=72  Identities=13%  Similarity=0.001  Sum_probs=55.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|++++|.|.+.+ +.+.++|+|++..+............ ..+|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            9 EKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             EECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             eccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            44567789999999999999987 55889999987665443322222111 23799999999999999999988

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.92  E-value=1.2e-09  Score=111.98  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=75.1

Q ss_pred             CCCEEEEcC----ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        368 VPPQILIRN----RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       368 ~~P~i~~~p----~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .+|.|...+    ..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...............      .+|.|.+++.+|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d   87 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH------WSLIMESVVPSD   87 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG------TEEEECSCCGGG
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCc------ceEEEecCCccc
Confidence            356666555    6778999999999999999999999999987766433222111111111      249999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +|.|+|.|.|..|.....+.|.|...+.
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~  115 (231)
T 3ojm_B           88 KGNYTCVVENEYGSINHTYHLDVVERSR  115 (231)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             CEEEEEEEecccCcccccEEEEEEcCCC
Confidence            9999999999999999999999887544

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.92  E-value=1.7e-09  Score=113.58  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=63.9

Q ss_pred             eeeecCceeEEeecC-----------CCCEEEEcCceeeeecCceEEEEEEeeccC-----CceEEEEecC--Ceee---
Q psy12803        353 INRINMGAYMCLADN-----------VPPQILIRNRRVGVPIGRTATLECEVEAFP-----LSVRYWEFID--GTLI---  411 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N-----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-----~P~v~W~k~~--~~l~---  411 (902)
                      |+.+|+|.|+|.|..           .++.+...+..+.+.+|++++|.|.+.+.|     .+.|.|++++  ..+.   
T Consensus        11 v~~~dsg~Y~C~a~g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~   90 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLI   90 (254)
T ss_dssp             ---------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEE
T ss_pred             ecCCccEEEEEcCchhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEE
Confidence            788999999999986           345666667788999999999999999998     4899999754  2110   


Q ss_pred             -------ecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE-EEEEEEee
Q psy12803        412 -------EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK-GSLILFES  467 (902)
Q Consensus       412 -------~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~  467 (902)
                             .....++.+....     ...+|.|.+++.+|+|.|+|.|.|..+... ....|.|.
T Consensus        91 ~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A           91 YLVSKLDSGDPDRFTGSGSG-----TDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             ETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             EeccccCCCccceEEEecCC-----CEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence                   0011223322211     123699999999999999999999866432 22345554

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.92  E-value=5.2e-09  Score=96.22  Aligned_cols=92  Identities=21%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.+.  |.+.|++++..+...  .++.+.....     ..+|.|.+++.+|+|.|
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~--~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   88 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG--DRHSLRQDGA-----RCELQIRGLVAEDAGEY   88 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCS--SSEEEEEETT-----EEEEEECSCCSTTCEEE
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCC--CcEEEEECCC-----EEEEEECCCChhhCEEE
Confidence            45688888888899999999999999775  789999988776443  3344332221     34599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|    +....++.|.|...|..
T Consensus        89 ~C~a----~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           89 LCMC----GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             EEEE----TTEEEEEEEEECCCCCS
T ss_pred             EEEe----CCCCEEEEEEEeCCCCC
Confidence            9999    77888899999876654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.92  E-value=4.1e-09  Score=111.07  Aligned_cols=141  Identities=15%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             EEEEcCCeEEEEEecCC-CC---CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC---------
Q psy12803        301 IVVREGDNVRLRCVATG-HP---KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G-~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------  367 (902)
                      ..+..|+.++|.|.+.+ .|   ..+++|+|++..+.         .....|.|..++..|+|.|+|++.+         
T Consensus        12 ~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~Is---------GaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs   82 (304)
T 3shs_A           12 RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE---------NNTATLTVADATSENAGSYKVTVQDTDTMTSVES   82 (304)
T ss_dssp             SSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECS---------CCSSEEEESSCCGGGCEEEEEEEEETTTCCEEEC
T ss_pred             ccccCCCCEEEEEEecCCCCCCCCceEEEEECCcccc---------CCcceEEeeeccccCCeEEEEEEEECCCCeeeee
Confidence            44678999999999875 66   44799999764421         1245899999999999999999987         


Q ss_pred             -------CCCEEEE-cCceeeeecCceEEEEEEe--ec-cC-----CceEEEEecCCeeeecCCceEEEeecCCCceeeE
Q psy12803        368 -------VPPQILI-RNRRVGVPIGRTATLECEV--EA-FP-----LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       368 -------~~P~i~~-~p~~~~v~~G~~v~L~C~a--~g-~P-----~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~  431 (902)
                             ..+.+.. .+....+..+..+.|.+.+  .+ .|     ..+++|++++..+....                 
T Consensus        83 ~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq-----------------  145 (304)
T 3shs_A           83 EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-----------------  145 (304)
T ss_dssp             CCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS-----------------
T ss_pred             eEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc-----------------
Confidence                   1112222 3444455667889999987  43 34     46999999876552110                 


Q ss_pred             eEEEEeccCCCCCeEEEEEEEeCCce--eEEEEEEEeec
Q psy12803        432 MQLNISNVNISDFDTYRCISKNEVDI--AKGSLILFESN  468 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N~~G~--~~~s~~L~V~~  468 (902)
                       .|++...+..++|.|+|.+.|..+.  ++.++.+.+..
T Consensus       146 -~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~  183 (304)
T 3shs_A          146 -DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT  183 (304)
T ss_dssp             -EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE
T ss_pred             -ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc
Confidence             2788888899999999999999763  35666665543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.91  E-value=9.2e-10  Score=101.48  Aligned_cols=71  Identities=21%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A           13 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            45678899999999999999999999999998876543322111111 135899999999999999999998

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.91  E-value=1.9e-10  Score=125.06  Aligned_cols=160  Identities=13%  Similarity=0.093  Sum_probs=43.8

Q ss_pred             EEEEcCCeEEEEEecCCC-CCC--ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC----CC-EE
Q psy12803        301 IVVREGDNVRLRCVATGH-PKP--SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV----PP-QI  372 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~-P~p--~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~----~P-~i  372 (902)
                      ..+.+|+.++|.|.+.+. |..  +|+|+|++..+.....  .......+|.|.....+|.+.|+|+|.|.    .. .+
T Consensus        96 ~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~--~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~  173 (291)
T 1mq8_A           96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF  173 (291)
T ss_dssp             SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC--CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEE
T ss_pred             ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC--CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccc
Confidence            347899999999999984 544  5899998766533221  01111235665555555666999999971    10 10


Q ss_pred             E---------E--cC-c------eeeeecCceEEEEEEeeccCCc---eEEEEecCCeeeecCCceEEEeecCCCceeeE
Q psy12803        373 L---------I--RN-R------RVGVPIGRTATLECEVEAFPLS---VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       373 ~---------~--~p-~------~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~  431 (902)
                      .         +  .| .      ...+.+|+.++|+|.+.|.|++   .|.|++++..+.....      ..++ .  ..
T Consensus       174 ~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~------~~g~-~--~~  244 (291)
T 1mq8_A          174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT------YGND-S--FS  244 (291)
T ss_dssp             EECCCCEECBC---------------------------------------------------------------------
T ss_pred             cccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceee------ecCC-e--EE
Confidence            0         0  00 0      1246789999999999998554   5889887776643110      0111 1  11


Q ss_pred             eEEEEeccCCCC--CeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        432 MQLNISNVNISD--FDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       432 stL~I~~V~~~D--sG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +++.+ +++++|  .+.|+|.|.|.....+....|.|.+++.+
T Consensus       245 ~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~  286 (291)
T 1mq8_A          245 AKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP  286 (291)
T ss_dssp             -------------------------------------------
T ss_pred             EEEec-ceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCc
Confidence            22222 123434  56777888886655677888888776544

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=7e-10  Score=101.23  Aligned_cols=73  Identities=22%  Similarity=0.433  Sum_probs=58.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecCC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.++.+.+|++++|.|.+.+.|.+.|.|+|++..+............+  .+|.|.+++.+|+|.|+|.|.|.
T Consensus        14 ~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   88 (110)
T 2dm3_A           14 QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR   88 (110)
T ss_dssp             ECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECS
T ss_pred             eCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECC
Confidence            34567889999999999999999999999999877654433322223333  38999999999999999999983

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.2e-09  Score=96.85  Aligned_cols=93  Identities=20%  Similarity=0.213  Sum_probs=72.5

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|++++|.|. .+.|.+.+.|++++..+....  ++.+....     ...+|.|.+++.+|+|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~--~~~~~~~~-----~~~~L~I~~v~~~D~G~Y   78 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASG--KHQPSQEG-----LTLRLTISALEKADSDTY   78 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSS--SEEEEEET-----TEEEEEEESCCTTTCSEE
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCC--eEEEEeCC-----CEEEEEECCCCcccCEEE
Confidence            3567777788889999999999999 488999999999887765432  33333222     123599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.    .|..+.++.|.|...+.+
T Consensus        79 ~C~----~g~~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           79 TCD----IGQAQSRAQLLVQGRRSG   99 (103)
T ss_dssp             EEE----CSSCBCCEEEEEECSCCC
T ss_pred             EEE----eCCceEEEEEEEeCccCC
Confidence            998    677778888998876654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.91  E-value=7.5e-10  Score=123.77  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC--ccceeccCCcEEEEeeeeecCceeEEeecCCCC-----
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSAVASSTLNFTRINRINMGAYMCLADNVPP-----  370 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~--~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~P-----  370 (902)
                      +..+++.+|++++|.|.+.| |.|.|+|+++++.+.....  .+... .+++|+|.+|+.+|+|.|+|+|.|..-     
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~  330 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNETLS  330 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEEEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccEEE
Confidence            45678999999999999999 9999999998776544321  12333 678999999999999999999999321     


Q ss_pred             -EEEEcCceeeeecCceEEEEEEeeccCCceEE
Q psy12803        371 -QILIRNRRVGVPIGRTATLECEVEAFPLSVRY  402 (902)
Q Consensus       371 -~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~  402 (902)
                       .+.+..   ...+|+.++|.|.+.|.|.|+|+
T Consensus       331 ~~l~V~~---~~~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          331 VELKVYN---FTLHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEES---SCCC-------------------
T ss_pred             EEEEEEe---eeccCCceEEEEEeCCCCCCccc
Confidence             111111   23678999999999999999864

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.91  E-value=4.3e-09  Score=105.14  Aligned_cols=89  Identities=18%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCEEEEcCceeeeec-CceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRRVGVPI-GRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~-G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.|...+. ..+.+ |+++.|.|.+.+.|.  +.+.|++++..+... ...           .....|.|.+++.+|+|
T Consensus         3 ~P~i~~~~~-~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~-~~~-----------~~~~~L~i~~~~~~d~G   69 (190)
T 2wv3_A            3 EPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-RKN-----------ASNMEYRINKPRAEDSG   69 (190)
T ss_dssp             CCEEEECCC-EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTC-CBC-----------CSEEEEEESSCCGGGCE
T ss_pred             CCcccccce-EEEccCCceEEEEEEeccCCCCceEEEEEECCEECccc-ceE-----------eccEEEEEecCCcccCE
Confidence            577776444 45556 999999999999987  899999887655321 110           01346999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .|+|.|.|. +....++.|.|..+|.
T Consensus        70 ~Y~C~~~n~-~~~~~~~~l~V~~~p~   94 (190)
T 2wv3_A           70 EYHCVYHFV-SAPKANATIEVKAAPD   94 (190)
T ss_dssp             EEEEEEEET-TEEEEEEEEEEECCCE
T ss_pred             EEEEEEEeC-CcccccEEEEEecCCc
Confidence            999999999 8889999999987654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=7.6e-10  Score=99.11  Aligned_cols=81  Identities=23%  Similarity=0.406  Sum_probs=61.8

Q ss_pred             cccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCce
Q psy12803        281 SQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGA  360 (902)
Q Consensus       281 ~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~  360 (902)
                      ..+..+|.+.     ..+.++.+.+|++++|.|.+.+.|.|.+.|+|++..+...  .........+|.|.+++.+|+|.
T Consensus         6 ~~~~~~P~~~-----~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~   78 (99)
T 2yr3_A            6 SGMEVAPSFS-----SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGT   78 (99)
T ss_dssp             SCCCEEEEEE-----ECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC--CCEEETTEEEEEECSCCTTCCBC
T ss_pred             CCcccCCcee-----ecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc--ceEeeCCeEEEEECCCChhhCEE
Confidence            3444555543     3456788999999999999999999999999987665322  12223334689999999999999


Q ss_pred             eEEeecCC
Q psy12803        361 YMCLADNV  368 (902)
Q Consensus       361 YtC~A~N~  368 (902)
                      |+|.|.|.
T Consensus        79 Y~C~a~N~   86 (99)
T 2yr3_A           79 YTCLAENA   86 (99)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEEC
Confidence            99999993

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=3.8e-09  Score=96.90  Aligned_cols=92  Identities=15%  Similarity=0.244  Sum_probs=66.6

Q ss_pred             CCEEEEcCce---eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRR---VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~---~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.+...+..   +.+.+|+++.|.|.+. .|.+.+.|++++..+.......  +.....     ..+|.|.+++.+|+|
T Consensus        10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~--~~~~~~-----~~~L~I~~v~~~D~G   81 (113)
T 2cpc_A           10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALL--LQKEDT-----VRRLVLPAVQLEDSG   81 (113)
T ss_dssp             CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBE--EEECSS-----EEEEEESSCCTTTCE
T ss_pred             CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEE--EEECCC-----EEEEEECCCCcccCE
Confidence            3444444433   6788999999999995 8889999999886664433332  222211     235999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|+|.|.|    .+.++.|.|..+|..
T Consensus        82 ~Y~C~a~n----~~~~~~l~V~~~p~~  104 (113)
T 2cpc_A           82 EYLCEIDD----ESASFTVTVTEPPVR  104 (113)
T ss_dssp             EEEEESSS----CEEEEEEEEECCCCC
T ss_pred             EEEEEEec----CcEEEEEEEecCCch
Confidence            99999999    567788888876643

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.89  E-value=1.4e-09  Score=110.95  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=72.9

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.+.|.|++++..+............. .+.  ....|.|.+++.+|+|.|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~--~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGA--LFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECT-TSC--EEESSCCBSSSCBCCEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEec-CCc--eEEEEEeccCCcccCceE
Confidence            67899999999999999999999999999999999999877664432211122111 111  122357899999999999


Q ss_pred             EEEEEeCCceeE-EEEEEEeec
Q psy12803        448 RCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      +|.|.|..|... ..+.|.|..
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~  106 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAV  106 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECE
T ss_pred             EEEEecCCCccccccceEEEEE
Confidence            999999998763 456666654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.89  E-value=8.1e-10  Score=98.68  Aligned_cols=72  Identities=26%  Similarity=0.347  Sum_probs=56.4

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecCC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+..... +.....++   +|.|.+++.+|+|.|+|.|.|.
T Consensus        10 ~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (99)
T 1u2h_A           10 VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR-RFAEEAEGGLCRLRILAAERGDAGFYTCKAVNE   84 (99)
T ss_dssp             ECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTT-EEEEECGGGEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCC-EEEEECCCCEEEEEEccCCcCCCEEEEEEEEEC
Confidence            345668899999999999999999999999998765543322 22222222   6999999999999999999883

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.89  E-value=7.2e-09  Score=112.62  Aligned_cols=157  Identities=15%  Similarity=0.188  Sum_probs=95.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC--------
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV--------  368 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~--------  368 (902)
                      ++.+.|.+|+++.|.|.+.- +.+. +.|.-.-........    -.....|.|.+++.+  +.|+|.+...        
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~----g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v   78 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLP----GNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKT   78 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCS----CSSEEEEEEESCCSC--CCCEEEEECSSCEEEEEC
T ss_pred             CCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccC----CCceEEEEEEecccC--CeEEEEEEcCCccEEEEE
Confidence            45678999999999999974 5555 888532111100000    001124788888743  5799999761        


Q ss_pred             -------CCEEEEcCceeeeecCceEEEEEEeecc-CCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEec
Q psy12803        369 -------PPQILIRNRRVGVPIGRTATLECEVEAF-PLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       369 -------~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                             |-.+.+.+....+.+|+.++|+|.+.+. |..  +|+|++++..+.....       ...   ...++|.+..
T Consensus        79 ~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~---~~~~~l~~~~  148 (291)
T 1mq8_A           79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGE---PAEVTTTVLV  148 (291)
T ss_dssp             EEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBT---TEEEEEECCC
T ss_pred             EEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCC---CceEEEEeee
Confidence                   1111222222347889999999999876 443  5899998877643220       011   1235577776


Q ss_pred             cCCCCCeEEEEEEEeCCce--------eEEEEEEEeecCCC
Q psy12803        439 VNISDFDTYRCISKNEVDI--------AKGSLILFESNAKT  471 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~--------~~~s~~L~V~~~p~  471 (902)
                      ....|.+.|+|.|.|.++.        .+....|.|..+|.
T Consensus       149 ~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~  189 (291)
T 1mq8_A          149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA  189 (291)
T ss_dssp             SSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----
T ss_pred             eeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC
Confidence            6667767999999998663        24556777776643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.88  E-value=9.5e-10  Score=107.47  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=56.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc--CCcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.++.+.+|++++|.|.+.+.|.|.|.|+|++..+............  ..+|.|.+++.+|+|.|+|.|.|
T Consensus        46 ~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  119 (154)
T 1fhg_A           46 KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN  119 (154)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEE
Confidence            3456789999999999999999999999999987655433222222112  24899999999999999999988

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.88  E-value=1.8e-09  Score=98.81  Aligned_cols=74  Identities=15%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC---CceEEecCCCcccccCC-cccee---------ccCCcEEEEeeeeecCcee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK---PSIIWKTSENKPITLGS-WKDSA---------VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~---p~v~W~k~~~~~~~~~~-~~~~~---------~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      +..+.++.+.+|++++|.|.+.|.|.   |.|.|+|++........ .+...         ....+|.|.+++.+|+|.|
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (108)
T 3cx2_A            8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSY   87 (108)
T ss_dssp             SBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEE
T ss_pred             EeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEE
Confidence            34566788999999999999999998   99999997632221111 11111         1235899999999999999


Q ss_pred             EEeecCC
Q psy12803        362 MCLADNV  368 (902)
Q Consensus       362 tC~A~N~  368 (902)
                      +|.|.|.
T Consensus        88 ~C~a~N~   94 (108)
T 3cx2_A           88 RCEVSTK   94 (108)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9999993

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=2.4e-09  Score=97.85  Aligned_cols=71  Identities=23%  Similarity=0.302  Sum_probs=55.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-eccCC--cEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASS--TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-~~~~~--sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..+.+.+|++++|.|.+.+.|.+.|.|+|++..+......... ...++  +|.|.+++.+|+|.|+|.|.|
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   87 (110)
T 2dm2_A           14 KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN   87 (110)
T ss_dssp             CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEEC
T ss_pred             cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEE
Confidence            345678999999999999999999999999987665432221111 12233  699999999999999999999

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.87  E-value=1.7e-09  Score=97.66  Aligned_cols=92  Identities=21%  Similarity=0.288  Sum_probs=72.1

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|++++|.|.+.+.|.+ +.|++++..+...  .++.+.....     ..+|.|.+++.+|+|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~--~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   78 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG--DKYSLRQEGA-----MLELVVRNLRPQDSGRY   78 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS--SSEEEEECSS-----EEEEEECSCCTTTCCCE
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC--CcEEEEEcCC-----EEEEEEccCCcccCEEE
Confidence            46777777888899999999999999999999 9999988776432  3444433221     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +|.    .|....++.|.|..++.
T Consensus        79 ~C~----~g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           79 SCS----FGDQTTSATLTVTALPS   98 (103)
T ss_dssp             EEE----CSSCBCCBCEEEECCCC
T ss_pred             EEE----ECCcEEEEEEEEEeccc
Confidence            998    56677778888887654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.6e-09  Score=98.16  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecCC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.++++.+|+++.|.|.+  .|.+.++|+|++..+............ ..+|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            34567899999999999999  799999999987665433322221111 137999999999999999999985

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.86  E-value=5.4e-09  Score=95.17  Aligned_cols=92  Identities=22%  Similarity=0.327  Sum_probs=69.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+..+.+.+|++++|.|.+.+.  |.+.|++++..+...  .++.+.....     .++|.|.+++.+|+|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~--~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   77 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDG--GRYSLKQDGT-----RCELQIHDLSVADAGEY   77 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSS--SSCEEEEETT-----EEEEEESSCCTTTCSEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCC--CCEEEEecCC-----EEEEEECCCCcccCEEE
Confidence            56778777888899999999999999765  689999988776433  2333322221     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        448 RCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|.|.|    ...++.|.|...+..
T Consensus        78 ~C~a~n----~~~~~~l~V~~~p~~   98 (108)
T 2dm7_A           78 SCMCGQ----ERTSATLTVRALPAR   98 (108)
T ss_dssp             EEEETT----EEEEEECEEECCCSS
T ss_pred             EEEEcC----CEEEEEEEEecCCHH
Confidence            999944    577788888775543

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.86  E-value=5e-09  Score=95.60  Aligned_cols=89  Identities=20%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             CCCEEEEcCce-eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        368 VPPQILIRNRR-VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      .+|.|...+.. +.+.+|++++|.|.+ +.|.+.+.|++++..+.... .++.+.....     ..+|.|.+++.+|+|.
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~-----~~~L~I~~v~~~D~G~   86 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG-SKYIFESIGA-----KRTLTISQCSLADDAA   86 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS-SSSEEEEETT-----EEEEEECSCSSSSCEE
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC-CeEEEEecCC-----EEEEEECCCCcccCEE
Confidence            45666665555 789999999999999 78999999999988775431 2333322221     2359999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEee
Q psy12803        447 YRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |+|.|    +....++.|.|.
T Consensus        87 Y~C~a----~~~~~~~~l~V~  103 (104)
T 1pd6_A           87 YQCVV----GGEKCSTELFVK  103 (104)
T ss_dssp             EEEEE----TTEEECCEEEEE
T ss_pred             EEEEE----CCCcEEEEEEEe
Confidence            99999    335566666664

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.86  E-value=1.1e-09  Score=110.71  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=73.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC---ceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG---VKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~---~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+.....   .....  ...+. .....|.|.+++.+|+
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML--LPSGS-LFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEE--CTTSC-EEESSCCCCSSCCCSC
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEE--ecCCc-EEEEEEEecCCCcccC
Confidence            478888888889999999999999999999999999998766543221   11111  11111 2233466778899999


Q ss_pred             eEEEEEEEeCCcee-EEEEEEEeecCCC
Q psy12803        445 DTYRCISKNEVDIA-KGSLILFESNAKT  471 (902)
Q Consensus       445 G~YtC~A~N~~G~~-~~s~~L~V~~~p~  471 (902)
                      |.|+|.|.|..|.. +..+.|.|...+.
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~  112 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILRD  112 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEECS
T ss_pred             eEEEEEEECCCCceeecceEEEEEeccc
Confidence            99999999999876 4566777765433

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.85  E-value=1.9e-09  Score=96.16  Aligned_cols=67  Identities=18%  Similarity=0.387  Sum_probs=54.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..+.+.+|+++.|.|.+.+.| +.+.|+|++..+....   .....++.|.|.+++.+|+|.|+|.|.|
T Consensus        15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A           15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN---RTRITGEEVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCS---SEEECSSEEEESSCCGGGSEEEEEEEEE
T ss_pred             CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCC---CEEEeCCEEEECCCChHHCEEEEEEecc
Confidence            45668899999999999999988 8999999766543322   2333477999999999999999999988

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.5e-08  Score=92.69  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC-c-------eEEEeecCCCceeeEeEEEEeccC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG-V-------KYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~-~-------~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ++.|...+.++.+.+|+++.|.|.+.+  .|.+.|++++..+..... .       ++.+.....     ..+|+|.+++
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~-----~~~L~I~~v~   80 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGL-----QHRLILHAVK   80 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTT-----EEEEEEESCC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCc-----EEEEEECCCC
Confidence            577888899999999999999999998  778999999988754331 1       555543321     3459999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        441 ISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .+|+|.|+|...+   ....++.|.|..+|.
T Consensus        81 ~~D~G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           81 HQDSGALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             STTCSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             HHHCccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            9999999875443   346788999987654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.85  E-value=4.3e-09  Score=120.63  Aligned_cols=103  Identities=25%  Similarity=0.488  Sum_probs=78.6

Q ss_pred             cCceeEEeecCCCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC--ceEEEeecCCCceeeEeEE
Q psy12803        357 NMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG--VKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       357 DsG~YtC~A~N~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~--~~~~~~~~~~~s~~~~stL  434 (902)
                      +...|.|.    +|.+...+..+.+.+|++++|.|.+ +.|.|.+.|+++++.+.....  .++.+  ...++      |
T Consensus       333 ~~~~~~C~----~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~--~~~~~------L  399 (440)
T 3zyj_A          333 DQNYFTCY----APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAV--LSDGT------L  399 (440)
T ss_dssp             --CCSCCC----CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEE--CTTCC------E
T ss_pred             hhhhccCC----CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEE--ccCCe------E
Confidence            34566774    5888888888999999999999999 579999999987776654332  23332  22333      9


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|.+|+.+|+|.|+|+|.|..|.+++++.|.|...+..
T Consensus       400 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~~~~~~  437 (440)
T 3zyj_A          400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH  437 (440)
T ss_dssp             EESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC-----
T ss_pred             EEccCChhhCEEEEEEEEcCCCcEEEEEEEEEeccccc
Confidence            99999999999999999999999999999999876654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.85  E-value=1.3e-09  Score=98.09  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=56.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecCC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.++.+.+|+++.|.|.+.+.|.|.+.|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|.
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A           13 LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             ECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             eCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            345678899999999999999999999999998766543332111111 1237999999999999999999883

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.84  E-value=1.9e-09  Score=98.52  Aligned_cols=73  Identities=21%  Similarity=0.435  Sum_probs=57.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|+++.|.|.+.|.|.|.+.|+|++..+.......... ....+|.|.+++.+|+|.|+|.|.|
T Consensus        18 ~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           18 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             EECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             EECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            445677899999999999999999999999999876654322211111 1235899999999999999999998

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.84  E-value=1.7e-09  Score=96.50  Aligned_cols=73  Identities=19%  Similarity=0.375  Sum_probs=56.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecCC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+...... ......  .+|.|.+++.+|+|.|+|.|.|.
T Consensus        10 ~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A           10 VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKY-KLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSE-EEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCE-EEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            34556788999999999999999999999999977654332221 111222  27999999999999999999883

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.84  E-value=7.3e-09  Score=104.45  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=73.8

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeee----------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIE----------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~----------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+..          ....++...         ..+|.|.++
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~L~i~~v   72 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS---------SSGITFSSV   72 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE---------TTEEEESCC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee---------ceeEEEccc
Confidence            4667778888999999999999999999999999998766321          111222221         135999999


Q ss_pred             CCCCCeEEEEEEEeCCc--eeEEEEEEEeecCCCCC
Q psy12803        440 NISDFDTYRCISKNEVD--IAKGSLILFESNAKTPV  473 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G--~~~~s~~L~V~~~p~~~  473 (902)
                      +.+|+|.|+|.|.|..|  ..+..+.|.|..++..+
T Consensus        73 ~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~  108 (212)
T 1f97_A           73 TRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP  108 (212)
T ss_dssp             CGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCC
T ss_pred             CcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCc
Confidence            99999999999999977  56788888888766543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=2.3e-09  Score=99.45  Aligned_cols=68  Identities=13%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc--CCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...+.+.+|+++.|.|.+.|.|.|.+.|+|++..+. ..... ....  ..+|.|.+++.+|+|.|+|.|.|
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N  100 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVH-VRTSDFDTVFFVRQAARSDSGEYELSVQI  100 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCE-EEECSSEEEEEESSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEE-EEECCCeEEEEECCCChhcCEEEEEEEEe
Confidence            456889999999999999999999999999876553 22211 2222  23599999999999999999999

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.84  E-value=3.5e-09  Score=96.09  Aligned_cols=70  Identities=20%  Similarity=0.416  Sum_probs=53.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+.... .......+++|.|.+++.+|+|.|+|.|.|
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A           16 NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             CCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBT-TEEEETTTTEEEECSCCGGGCEEEEEEEC-
T ss_pred             CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCC-CeEEeCCCcEEEEeecCcccCEEEEEEEEe
Confidence            4466889999999999999999999999999877654322 223334567899999999999999999998

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.84  E-value=2.3e-09  Score=106.04  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...  .+..+.....   ...++|.|.+++.+|+|.|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~--~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~   76 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL--DQLYIPVSEQ---HWIGFLSLKSVERSDAGRYW   76 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS--EEEEEEEETT---EEEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC--CceEEEecCC---CceEEEEEeecCcccCeEEE
Confidence            467778888899999999999999999999999999887665432  2222222221   23467999999999999999


Q ss_pred             EEEEeCCce-eEEEEEEEeecCCC
Q psy12803        449 CISKNEVDI-AKGSLILFESNAKT  471 (902)
Q Consensus       449 C~A~N~~G~-~~~s~~L~V~~~p~  471 (902)
                      |.|.|..+. .+..+.|.|..+|.
T Consensus        77 C~~~~~~~~~~~~~~~l~V~~~p~  100 (182)
T 1rhf_A           77 CQVEDGGETEISQPVWLTVEGVPF  100 (182)
T ss_dssp             EEESSCTTCEECCCEEEEEECSCE
T ss_pred             EEEEcCCCcEEEEEEEEEEecCCe
Confidence            999999775 45678888876544

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.83  E-value=4.6e-09  Score=95.00  Aligned_cols=70  Identities=11%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+.+ |.+.+.|+|++..+......+.....   ..+|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            456688999999999999988 77999999987665443321112222   25799999999999999999987

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.83  E-value=3.1e-08  Score=101.17  Aligned_cols=148  Identities=15%  Similarity=0.162  Sum_probs=93.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN--------  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N--------  367 (902)
                      .+..+.|.+|+++.|.|.+.. +.+ .+.|...-.....     ..-.....+.|.+|+ +|.+.|.|.+..        
T Consensus         8 ~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~-----~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~   80 (196)
T 3bn3_B            8 QPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGT-----QRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQAR   80 (196)
T ss_dssp             ESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSEEEEE-----EEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEE
T ss_pred             cCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccCCeeE-----ccccCceEEEEEEEc-cCCCceEEEEECCCCceEEE
Confidence            455678999999999999975 444 5777532111000     000111248999999 888889999765        


Q ss_pred             -------CCCEEEEcCceeeeecCceEEEEEEeecc-CCce--EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEe
Q psy12803        368 -------VPPQILIRNRRVGVPIGRTATLECEVEAF-PLSV--RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       368 -------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~--v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                             .|-.+.+.+....+.+|+.++|+|.+.+. |...  |.|++++..+.....     ..........+++|.+.
T Consensus        81 v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~-----~~~~~~~~~~t~~~~~~  155 (196)
T 3bn3_B           81 GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF-----AGEPPRARGAVLTATVL  155 (196)
T ss_dssp             CEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEEC-----TTSCTTCCCEEEEEEEE
T ss_pred             EEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccc-----ccccccccceeEEEEEe
Confidence                   23333333433458899999999999875 6544  899988776643210     01111111234567776


Q ss_pred             ccCCCCCeEEEEEEEeCCc
Q psy12803        438 NVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G  456 (902)
                      ....+|...|+|.|.|.++
T Consensus       156 ~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          156 ARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             CCGGGTTCEEEEEEEEECG
T ss_pred             eeeccCCCeEEEEEEccCC
Confidence            5555454499999999877

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=5.2e-09  Score=95.37  Aligned_cols=72  Identities=11%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.++.+.+|++++|.|.+.+.|. +.+.|+|++..+............ ..+|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           13 KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            3456789999999999999999774 489999988766543332222111 23799999999999999999977

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.82  E-value=1.6e-09  Score=111.22  Aligned_cols=88  Identities=18%  Similarity=0.068  Sum_probs=64.8

Q ss_pred             eeeeecCceEEEEEE---eeccCCceEEEEecCCeeeec-----CCc----------eEEEeecCCCceeeEeEEEEecc
Q psy12803        378 RVGVPIGRTATLECE---VEAFPLSVRYWEFIDGTLIEH-----DGV----------KYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~---a~g~P~P~v~W~k~~~~l~~~-----~~~----------~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      .+.+.+|++++|.|.   +.+.|.+.|.|++++......     ...          ++.+....     -..+|.|.++
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v   76 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-----NTFFLVVTAA   76 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEET-----TEEEEEESSC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcC-----CEEEEEEccC
Confidence            467899999999995   568899999999876432110     000          11111111     1346999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        440 NISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      +.+|+|.|+|.|.|..|..+..+.|.|..++
T Consensus        77 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~  107 (203)
T 4fa8_A           77 NISHDGNYLCRMKLGETEVTKQEHLSVVKPL  107 (203)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEcCCCcEEEEEEEEecCCc
Confidence            9999999999999999999999999997644

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=98.60  Aligned_cols=95  Identities=16%  Similarity=0.175  Sum_probs=69.2

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ...+..+.+.+|++++|.|.+.+.|.+.+.|++.+...+..      ...++.......    ...+|.|.+++.+|+|.
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~  117 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP----HELSISISNVALADEGE  117 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECS----SEEEEEECSCCGGGCEE
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCC----CeEEEEECCCChhhCEE
Confidence            34566788999999999999999999999998543322211      112222211111    13569999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |+|.|.|. +.....+.|.|..+|.+
T Consensus       118 Y~C~~~n~-~~~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A          118 YTCSIFTM-PVRTAKSLVTVLGIPQK  142 (145)
T ss_dssp             EEEEECSS-SCEEEEEEEEEECCCC-
T ss_pred             EEEEEEcC-CCceEEEEEEEEeCCCC
Confidence            99999999 98999999999876543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.81  E-value=3.3e-09  Score=105.56  Aligned_cols=95  Identities=24%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ...++.+....       .+|.|.+++.+|+|.|+
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~   78 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL-FDTRYSIRENG-------QLLTILSVEDSDDGIYC   78 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCT-TCTTEEEEGGG-------TEEEESSCCGGGCEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccc-cCccEEEcCCc-------cEEEEcCCCcccCeEEE
Confidence            46777777788899999999999999999999999987765543 23334333221       24999999999999999


Q ss_pred             EEEEeCCce-eEEEEEEEeecCCC
Q psy12803        449 CISKNEVDI-AKGSLILFESNAKT  471 (902)
Q Consensus       449 C~A~N~~G~-~~~s~~L~V~~~p~  471 (902)
                      |.|.|..|. ....+.|.|...+.
T Consensus        79 C~~~~~~~~~~~~~~~l~v~~~p~  102 (192)
T 2iep_A           79 CTANNGVGGAVESCGALQVKMKPK  102 (192)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEEEE
T ss_pred             EEEEcCCCceeEeEEEEEEEeCCc
Confidence            999999887 45667777765443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=4.4e-09  Score=93.83  Aligned_cols=63  Identities=25%  Similarity=0.431  Sum_probs=53.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+....+.+|++++|.|.+.+.|.+.+.|+|++..+...        .+.+|.|.+++.+|+|.|+|.|.|
T Consensus        16 ~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A           16 EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP--------PSPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             ESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC--------CCSEEEEESCCTTTCEEEECEECC
T ss_pred             CCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC--------CCCEEEECCCCcccCEEEEEEEEe
Confidence            455677999999999999999999999999976654221        356899999999999999999998

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.79  E-value=5.2e-09  Score=108.28  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=73.3

Q ss_pred             CCCEEEEc----CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        368 VPPQILIR----NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       368 ~~P~i~~~----p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .+|.|...    +..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...............      .+|.|.+++.+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~d   83 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ------WSLVMESVVPSD   83 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGG------TEEEECSCCGGG
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccc------eEEEEEeCCccc
Confidence            35666543    34678999999999999999999999999988766443222111111122      249999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +|.|+|.|.|..+....++.|.|...+.
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~  111 (241)
T 3grw_A           84 RGNYTCVVENKFGSIRQTYTLDVLERSP  111 (241)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             CEEEEEEEeecCCceEEEEEEEEeccCC
Confidence            9999999999999999999999876433

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.79  E-value=2e-09  Score=96.46  Aligned_cols=70  Identities=20%  Similarity=0.367  Sum_probs=55.7

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+.......  .......+|.|.+++.+|+|.|+|.|.|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   87 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE   87 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeC
Confidence            45788999999999999999999999999876654332211  22233458999999999999999999883

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.79  E-value=6.8e-09  Score=92.53  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=55.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCCcccccCCccceeccCC--cEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAVASS--TLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~~~~~~~~~~~~~~--sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+.++.+.+|++++|.|.+.+. |.+.+.|+|++..+..... ......++  +|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEK-YEITYEDGVAILYVKDITKLDDGTYRCKVVND   80 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSS-EEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCC-EEEEEcCCeEEEEEecCChhhCeEEEEEEECC
Confidence            4556889999999999999997 9999999998765433222 12222333  8999999999999999999983

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=4.3e-09  Score=95.15  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecCC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +.+.+|++++|.|.+.+.|.+ +.|+|++..+........... ....|.|.+++.+|+|.|+|.|.|.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   87 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV   87 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc
Confidence            789999999999999999988 999998765543322222111 1247999999999999999999883

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.78  E-value=5.7e-09  Score=94.88  Aligned_cols=73  Identities=12%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecCC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+ +.|+|++..+........... ....|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           12 LQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             EECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             ecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            345667899999999999999998887 999998876644332221111 1138999999999999999999984

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=4.8e-09  Score=94.47  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=56.1

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCc--cceeccC---CcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--KDSAVAS---STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~--~~~~~~~---~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|++++|.|.+.+.| +.+.|+|++..+......  +.....+   ..|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           12 VTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             EECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             EecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC
Confidence            3345678899999999999999988 999999988766443321  2222222   3699999999999999999987

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.78  E-value=5.4e-09  Score=92.23  Aligned_cols=64  Identities=22%  Similarity=0.363  Sum_probs=54.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+....+.+|+++.|.|.+.|.|.|.+.|+|++..+...        ..++|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A            9 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------TKKLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             CCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC--------CSSEEEESSCCGGGCEEEEEEEECS
T ss_pred             CCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC--------CCCeEEECCCCHHhCEEEEEEEEcC
Confidence            455678999999999999999999999999976543221        2458999999999999999999993

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.77  E-value=1.1e-08  Score=103.22  Aligned_cols=96  Identities=13%  Similarity=0.151  Sum_probs=69.1

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCC-----ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPL-----SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~-----P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +...+..+.+.+|+++.|.|.+.+.|.     +.+.|++.+........ ++.+....  ......+|.|.+++.+|+|.
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~-r~~~~~~~--~~~~~~~L~I~~v~~~D~G~   81 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSE-RATLLEEQ--LPLGKALFHIPSVQVRDSGQ   81 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCS-SCEECGGG--GGGTEEEEEECSCCGGGCEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCC-ceEEeecc--ccCCeeEEEECCCCHHHCcE
Confidence            344556788999999999999999987     89999995544433222 22221110  00123469999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|.|..+..+..+.|.|...+
T Consensus        82 Y~C~~~~~~~~~~~~~~l~V~~~~  105 (202)
T 3bp6_B           82 YRCLVICGAAWDYKYLTVKVKASY  105 (202)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             EEEEEEeCCCcceEEEEEEecCCC
Confidence            999999999988999999998654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.77  E-value=4.4e-09  Score=99.74  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC---CCCceEEecCCCcccccC-Ccccee---------ccCCcEEEEeeeeecCcee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH---PKPSIIWKTSENKPITLG-SWKDSA---------VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~---P~p~v~W~k~~~~~~~~~-~~~~~~---------~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      +..+.++.|.+|++++|.|.+.+.   |.|.|+|+|+....+... ..+...         ....+|+|.+|+.+|+|.|
T Consensus        11 ~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y   90 (126)
T 2dav_A           11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   90 (126)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             EEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEE
Confidence            334567889999999999999874   899999999632111110 111111         1136899999999999999


Q ss_pred             EEeecCC
Q psy12803        362 MCLADNV  368 (902)
Q Consensus       362 tC~A~N~  368 (902)
                      +|+|.|.
T Consensus        91 ~Cevsn~   97 (126)
T 2dav_A           91 RCEVTYK   97 (126)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9999983

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.77  E-value=4e-09  Score=121.34  Aligned_cols=106  Identities=29%  Similarity=0.536  Sum_probs=79.0

Q ss_pred             eeeecCceeEEeecCCCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC--ceEEEeecCCCceee
Q psy12803        353 INRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG--VKYSISDVDKGSYQY  430 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~--~~~~~~~~~~~s~~~  430 (902)
                      +..-|.+.|.|.    +|.+...+..+.+.+|++++|.|.+.  |.|.|.|+++++.+.....  .++.+  ..+++   
T Consensus       340 l~~~~~~~~~C~----~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~--~~~g~---  408 (452)
T 3zyi_A          340 LVEVDQASFQCS----APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISV--LNDGT---  408 (452)
T ss_dssp             TTSCCGGGCCCC----CCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEE--CTTSC---
T ss_pred             hhccchhhhccc----CcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEE--CCCCe---
Confidence            334455677885    47777777788899999999999998  9999999997776654332  12222  22333   


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                         |.|.+++.+|+|.|+|+|.|..|.+++++.|.|.+.+..
T Consensus       409 ---L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  447 (452)
T 3zyi_A          409 ---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTH  447 (452)
T ss_dssp             ---EECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             ---EEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEEEccccc
Confidence               999999999999999999999999999999999876554

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.76  E-value=9.8e-09  Score=92.71  Aligned_cols=73  Identities=15%  Similarity=0.304  Sum_probs=56.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC------ccceec----cCCcEEEEeeeeecCceeEEe
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS------WKDSAV----ASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~------~~~~~~----~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      +..+.++.+.+|++++|.|.+.+.|.+.+.|+|++...+....      .+....    .+.+|.|.+++.+|+|.|+|.
T Consensus        10 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (108)
T 3m45_A           10 FPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCS   89 (108)
T ss_dssp             CEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEE
T ss_pred             cccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEE
Confidence            4456778999999999999999999999999997763322111      122211    345899999999999999999


Q ss_pred             ecC
Q psy12803        365 ADN  367 (902)
Q Consensus       365 A~N  367 (902)
                      |.|
T Consensus        90 ~~n   92 (108)
T 3m45_A           90 LFT   92 (108)
T ss_dssp             ECS
T ss_pred             EEc
Confidence            988

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=6.4e-09  Score=93.79  Aligned_cols=69  Identities=17%  Similarity=0.280  Sum_probs=54.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC---CcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS---STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.++.+.+|++++|.|.+.+ |.+.+.|+|++..+.....  .....+   ..|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           13 KPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQK--YDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             ECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSS--EEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             ecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCC--EEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            3456688999999999999998 8889999998776543332  222222   2699999999999999999988

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.76  E-value=7.2e-10  Score=122.70  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             cCceeEEeecC----------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCC
Q psy12803        357 NMGAYMCLADN----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG  426 (902)
Q Consensus       357 DsG~YtC~A~N----------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~  426 (902)
                      |.+.|+|.+.+          .+|.+...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+.......         
T Consensus       136 ~~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~---------  206 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS---------  206 (347)
T ss_dssp             GGGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC---------
T ss_pred             cccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc---------
Confidence            57899998866          57899988888899999999999999999999999999886643221110         


Q ss_pred             ceeeEeEEEEeccCCCCCe-EEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        427 SYQYIMQLNISNVNISDFD-TYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       427 s~~~~stL~I~~V~~~DsG-~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .....++|.|.+++.+|+| .|+|.|.|..|..+.++.|.|..+|.
T Consensus       207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~  252 (347)
T 2ifg_A          207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPAS  252 (347)
T ss_dssp             CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEE
T ss_pred             eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCe
Confidence            1122456999999999999 99999999999998888888876554

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=9.3e-09  Score=95.09  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee--ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++++.+|++++|.|.+.+.|.|.+.|+|++..+..........  ....+|.|.+++.+|+|.|+|.+.+
T Consensus        17 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g~   91 (115)
T 2cr6_A           17 IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD   91 (115)
T ss_dssp             EECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEETT
T ss_pred             eccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEECC
Confidence            345677899999999999999999999999999877654433322221  1234899999999999999999654

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=98.75  E-value=4e-08  Score=116.24  Aligned_cols=152  Identities=16%  Similarity=0.187  Sum_probs=102.0

Q ss_pred             EEcCCeEEEEEecCCC-CC---CceEEecCCCcccccCCccceecc------CCcEEEEeeeeecCceeEEeecC-----
Q psy12803        303 VREGDNVRLRCVATGH-PK---PSIIWKTSENKPITLGSWKDSAVA------SSTLNFTRINRINMGAYMCLADN-----  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~-P~---p~v~W~k~~~~~~~~~~~~~~~~~------~~sL~I~~Vt~~DsG~YtC~A~N-----  367 (902)
                      +..+.++.|.|.+.+. |.   ..|+|++++..+............      .+.|.|......|.+.|+|++.+     
T Consensus       355 ~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~  434 (551)
T 1ntl_A          355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  434 (551)
T ss_pred             eeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCC
Confidence            5678899999999984 43   589999988765322111111111      23577777777789999999988     


Q ss_pred             -------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803        368 -------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       368 -------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s  432 (902)
                                   .+|.+.+.+....+..|+.++|.|.+.++ |. ..|+|++++..+..  ..........++++...+
T Consensus       435 ~~~~~~~~~~~~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~--~~~~~~~~~~dgty~~~s  512 (551)
T 1ntl_A          435 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAEN--YKNTQPIMNTNGSYFVYS  512 (551)
T ss_pred             CeEEEEecCCCCCcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccC--ceeccceeCCCCCEEEEE
Confidence                         12333222222224468899999999985 54 48999988776532  111222335667888888


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .|.|......+.+.|+|+|.+..-
T Consensus       513 ~l~v~~~~~~~~~~ytC~V~h~~l  536 (551)
T 1ntl_A          513 KLNVQKSNWEAGNTFTCSVLHEGL  536 (551)
T ss_pred             EEEEcHHHcCCCCeEEEEEEECCC
Confidence            899887766678999999998754

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.74  E-value=1.5e-08  Score=92.38  Aligned_cols=69  Identities=19%  Similarity=0.297  Sum_probs=53.6

Q ss_pred             cCCc-EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSP-IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~-v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.+ +.+.+|++++|.|.+ +.|.+.|.|+|++..+.... .+.....++   +|.|.+++.+|+|.|+|.|.|
T Consensus        21 ~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           21 KLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG-SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             ECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS-SSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             cCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC-CeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence            3344 789999999999999 68999999999877654431 222233233   899999999999999999966

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=5.2e-09  Score=98.13  Aligned_cols=74  Identities=16%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC---CCCceEEecCCCcccccC-Ccccee---------ccCCcEEEEeeeeecCcee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH---PKPSIIWKTSENKPITLG-SWKDSA---------VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~---P~p~v~W~k~~~~~~~~~-~~~~~~---------~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      +..+.++.|.+|++++|.|.+.+.   |.|.|+|+|+....+... ..+...         ..+.+|+|.+|+.+|+|.|
T Consensus        16 ~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (118)
T 2edn_A           16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYY   95 (118)
T ss_dssp             SBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCE
T ss_pred             EECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEE
Confidence            334677889999999999999874   799999999632221111 111111         1146899999999999999


Q ss_pred             EEeecCC
Q psy12803        362 MCLADNV  368 (902)
Q Consensus       362 tC~A~N~  368 (902)
                      +|+|.|.
T Consensus        96 ~Cevsn~  102 (118)
T 2edn_A           96 RLEVKAK  102 (118)
T ss_dssp             EEEEECS
T ss_pred             EEEEEEc
Confidence            9999983

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.73  E-value=8.1e-09  Score=98.43  Aligned_cols=75  Identities=25%  Similarity=0.381  Sum_probs=57.8

Q ss_pred             ceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC--------Cccce------eccCCcEEEEeeeeecC
Q psy12803        293 EHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG--------SWKDS------AVASSTLNFTRINRINM  358 (902)
Q Consensus       293 ~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~--------~~~~~------~~~~~sL~I~~Vt~~Ds  358 (902)
                      ..+..+.++.+.+|++++|.|.+.+.|.|.+.|+|++..+....        ..+..      ...+++|.|.+++.+|+
T Consensus        23 ~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  102 (137)
T 3qr2_A           23 GFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDT  102 (137)
T ss_dssp             EEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGC
T ss_pred             eEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccC
Confidence            33456778899999999999999999999999999776543210        00111      11346899999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|+|.|.|
T Consensus       103 G~Y~C~a~N  111 (137)
T 3qr2_A          103 GTYECRASN  111 (137)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            999999999

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.73  E-value=1.1e-08  Score=93.01  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             EcCCeEEEEEecCCCCCCceEEecCCCcccccCCccc--eecc----CCcEEEEeeeeecCceeEEeecC
Q psy12803        304 REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD--SAVA----SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       304 ~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~--~~~~----~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..++.+.|.|.+.|.|.|.++|+|++..+........  ....    .++|.|.+++.+|+|.|+|.|.|
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   83 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN   83 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEe
Confidence            4688999999999999999999998765543321101  1112    23599999999999999999999

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.72  E-value=1.7e-08  Score=89.79  Aligned_cols=70  Identities=11%  Similarity=0.239  Sum_probs=53.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+ +.|.+.+.|+|++..+............ ..+|.|.+++.+|+|.|+|.|.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ag~   84 (95)
T 2k1m_A           14 KPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGS   84 (95)
T ss_dssp             CCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEETT
T ss_pred             CCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEECC
Confidence            4566889999999999999 7889999999987665433222211111 13799999999999999999854

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.72  E-value=2.9e-08  Score=101.30  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=66.8

Q ss_pred             EEEcCcee-eeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        372 ILIRNRRV-GVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       372 i~~~p~~~-~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      +.+.+... .+.+|++++|.|.+.|.|.|.|.|++......  . ..... ...      ..+|.|.+++.+|+|.|+|.
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~-~~~~~-~~~------~~~L~I~~v~~~D~G~Y~C~   72 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--N-GKVTN-EGT------TSTLTMNPVSFGNEHSYLCT   72 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--S-SEEEE-ETT------EEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--c-ceEEE-cCC------ccEEEECcCCHHHCEEEEEE
Confidence            44445544 44599999999999999999999987432211  1 11111 111      23499999999999999999


Q ss_pred             EEeCCceeEEEEEEEeecCCCC
Q psy12803        451 SKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       451 A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |.|..|..+..+.|.|..+|..
T Consensus        73 a~n~~~~~~~~~~l~V~~~p~~   94 (202)
T 1vca_A           73 ATCESRKLEKGIQVEIYSFPKD   94 (202)
T ss_dssp             EEETTEEEEEEEEEEEEBCCSC
T ss_pred             EEECCceEeeEEEEEEEeCCCC
Confidence            9999999889999999876543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.71  E-value=1.7e-08  Score=101.56  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +..+...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+....  ..... ............+|.|.+++.+|+|.
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT-ASYEDRVTFLPTGITFKSVTREDTGT   82 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEEC-TTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccC-ccccCceEeeccEEEEeeCCHHHCcE
Confidence            3566667788889999999999999999999999999876632110  00000 00000111111459999999999999


Q ss_pred             EEEEEEeCCc--eeEEEEEEEeecCCCCC
Q psy12803        447 YRCISKNEVD--IAKGSLILFESNAKTPV  473 (902)
Q Consensus       447 YtC~A~N~~G--~~~~s~~L~V~~~p~~~  473 (902)
                      |+|.|.|..|  ..+..+.|.|..++..+
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~  111 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKP  111 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEBCCCCC
T ss_pred             EEEEEecCCCCccceEEEEEEEecCCcCC
Confidence            9999999866  44567777777766543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.71  E-value=5.2e-08  Score=100.29  Aligned_cols=94  Identities=21%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             CceeeeecCceEEEEEEeeccCCc---eEEEEecCCeeee---cCC------------ceEEEeecCCCceeeEeEEEEe
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS---VRYWEFIDGTLIE---HDG------------VKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~~~l~~---~~~------------~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ...+.+.+|++|+|.|.+.+.+.+   .|.|++++.....   .++            .+......  ....-..+|.|.
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~--~~~~~~~~L~I~   88 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD--GITAGKAALRIH   88 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECT--TGGGTEEEEEES
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecc--cccCCeEEEEEe
Confidence            445788999999999999877655   6999987643211   010            01111100  011123569999


Q ss_pred             ccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        438 NVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      +++.+|+|.|+|.|.|..|..+..+.+.+.....
T Consensus        89 ~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~  122 (226)
T 4f80_A           89 NVTASDSGKYLCYFQDGDFYEKALVELKVAALGS  122 (226)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC
T ss_pred             eCchHHCeeEEEEEECCCcEEEEEEEEeecccee
Confidence            9999999999999999999888887777765443

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.71  E-value=8.9e-09  Score=91.96  Aligned_cols=68  Identities=21%  Similarity=0.468  Sum_probs=54.9

Q ss_pred             cCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+..+.+.+|++++|.|.+. +.|.+.+.|+|++.....    ......+++|.|.+++.+|+|.|+|.|.|.
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP----SRAMDFNGILTIRNVQPSDAGTYVCTGSNM   84 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC----TTEEEETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC----ceeecCCCEEEEeCCChhhCEEEEEEecCC
Confidence            34567899999999999998 689999999997543322    123345679999999999999999999983

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.70  E-value=2.4e-08  Score=103.71  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeec---cCCceEEEEecCCee----eec------------------------CCceEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEA---FPLSVRYWEFIDGTL----IEH------------------------DGVKYSI  420 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g---~P~P~v~W~k~~~~l----~~~------------------------~~~~~~~  420 (902)
                      +...+..+.+.+|++++|.|.+.+   .|.+.|.|++++...    ...                        ...+..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            344556788999999999999998   888999999876331    100                        0111111


Q ss_pred             eecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce-----eEEEEEEEeecCC
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI-----AKGSLILFESNAK  470 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~-----~~~s~~L~V~~~p  470 (902)
                      .....      .+|.|.+++.+|+|.|+|.|.|..+.     +..++.|.|...+
T Consensus        85 ~~~~~------~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~  133 (250)
T 2fbo_J           85 ANLAA------PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT  133 (250)
T ss_dssp             SCTTS------CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS
T ss_pred             ccCCc------ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC
Confidence            11111      24999999999999999999998764     3668888887753

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.69  E-value=9.6e-09  Score=95.53  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             CCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCccccc---CCccce------eccCCcEEEEeeeeecCceeEEeec
Q psy12803        298 SSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENKPITL---GSWKDS------AVASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~~~~~---~~~~~~------~~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      +..+.+.+|++++|.|.+.+  .|.+.+.|++++..+...   ......      ....++|.|.+++.+|+|.|+|.|.
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            34568999999999999998  455789999987743210   111111      1134579999999999999999999


Q ss_pred             CC
Q psy12803        367 NV  368 (902)
Q Consensus       367 N~  368 (902)
                      |.
T Consensus        95 n~   96 (122)
T 3s35_X           95 SG   96 (122)
T ss_dssp             CS
T ss_pred             cC
Confidence            83

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.69  E-value=7e-09  Score=104.55  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+.. .+.+|++++|.|.+.+ |.+.+.|++++..+....    ......    ....+|.|.+++.+|+|.|+
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~----~~~~~~----~~~~~L~i~~v~~~D~G~Y~   74 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR----QNPLEP----KNKARFSIPSMTEDYAGRYR   74 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE----ECCCSS----SSEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc----cccccC----CceEEEEeccCCcccCceEE
Confidence            5777777776 7899999999999998 778999999887653211    000000    11346999999999999999


Q ss_pred             EEEEeCCce--eEEEEEEEeecC
Q psy12803        449 CISKNEVDI--AKGSLILFESNA  469 (902)
Q Consensus       449 C~A~N~~G~--~~~s~~L~V~~~  469 (902)
                      |.|.|..|.  .+..+.|.|...
T Consensus        75 C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 3p2t_A           75 CYYRSPVGWSQPSDPLELVMTGA   97 (196)
T ss_dssp             EEEEETTEEBCCCCCEEEEEECS
T ss_pred             EEEeCCCcccCCCccEEEEecCC
Confidence            999999983  356677777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.69  E-value=2.3e-08  Score=111.69  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      .+..+.+.+|++++|.|.+.+ |.|.|.|+++++.+....  ..++.+   ..+      +|.|.+|+.+|+|.|+|+|.
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~---~~~------~L~I~~v~~~D~G~Y~C~a~  321 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV---RNG------DLFFKKVQVEDGGVYTCYAM  321 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE---ETT------EEEESSCCTTSCEEEEEEEE
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe---ecC------eEEEeecCcccCEEEEEEEe
Confidence            345678999999999999999 999999999877654422  123333   222      49999999999999999999


Q ss_pred             eCCceeEEEEEEEeecC
Q psy12803        453 NEVDIAKGSLILFESNA  469 (902)
Q Consensus       453 N~~G~~~~s~~L~V~~~  469 (902)
                      |..|..+.++.|.|...
T Consensus       322 N~~g~~~~~~~l~V~~~  338 (361)
T 2xot_A          322 GETFNETLSVELKVYNF  338 (361)
T ss_dssp             CSSCEEEEEEEEEEESS
T ss_pred             cCCCccEEEEEEEEEee
Confidence            99999999999999653

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.69  E-value=2e-08  Score=91.29  Aligned_cols=66  Identities=18%  Similarity=0.352  Sum_probs=51.5

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++.+.+|++++|.|.+.+.  |.+.|+|++..+....  +.....++   +|.|.+++.+|+|.|+|.|.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A           15 LKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGG--RYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             CBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSS--SCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             CCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCC--CEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            456789999999999999875  6899999877654322  22222233   499999999999999999977

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.68  E-value=3.1e-08  Score=89.24  Aligned_cols=68  Identities=24%  Similarity=0.344  Sum_probs=53.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+.+.|.+ +.|+|++..+....  +.....++   +|.|.+++.+|+|.|+|.+.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g~   84 (103)
T 2e7b_A           14 ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD--KYSLRQEGAMLELVVRNLRPQDSGRYSCSFGD   84 (103)
T ss_dssp             CCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSS--SEEEEECSSEEEEEECSCCTTTCCCEEEECSS
T ss_pred             cCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCC--cEEEEEcCCEEEEEEccCCcccCEEEEEEECC
Confidence            4466889999999999999999988 99999876653322  22233333   599999999999999998655

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.67  E-value=9.6e-09  Score=103.65  Aligned_cols=91  Identities=10%  Similarity=0.040  Sum_probs=67.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+.. .+.+|++++|.|.+.+.|. .+.|++++..+....    ......    .....|.|.+++.+|+|.|+
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~----~~~~~~----~~~~~L~i~~v~~~D~G~Y~   74 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDT----QNPLEP----KNKARFSIPSMTEHHAGRYR   74 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEE----ECCCSS----TTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccc----ccccCC----ccccEEEeccCChhHCeEEE
Confidence            5778777764 7899999999999998876 999999887553210    000000    11346999999999999999


Q ss_pred             EEEEeCCcee--EEEEEEEeecC
Q psy12803        449 CISKNEVDIA--KGSLILFESNA  469 (902)
Q Consensus       449 C~A~N~~G~~--~~s~~L~V~~~  469 (902)
                      |.|.|..|..  +..+.|.|...
T Consensus        75 C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 2d3v_A           75 CYYYSPAGWSEPSDPLELVVTGF   97 (196)
T ss_dssp             EEEEETTEECBCCCCEEEEEECS
T ss_pred             EEEeCCCCcCCcCccEEEEecCC
Confidence            9999998754  35577777764

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.67  E-value=4.1e-08  Score=88.09  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+.+|++++|.|.+. .|.+.+.|+|++..+............ ...|.|.+++.+|+|.|+|.|.+
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ag~   84 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGD   84 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEETT
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEECC
Confidence            6788999999999999 699999999988765443322221111 13699999999999999999833

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=6.7e-09  Score=93.35  Aligned_cols=65  Identities=18%  Similarity=0.378  Sum_probs=52.5

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|++++|.|.+.+.| |.+.|+|++..+....   ........|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   75 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN---RTRITGEEVEVQDSVPADSGLYACVTSS   75 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCS---SEEECSSEEEETTCCTTTCEEEEEEEEE
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCC---cEEEECCEEEEccCCHHHCEEEEEEEEe
Confidence            345688999999999999987 7999999876553322   2222367999999999999999999988

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=2.3e-08  Score=89.87  Aligned_cols=82  Identities=22%  Similarity=0.260  Sum_probs=61.7

Q ss_pred             ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .++.+.+|++++|.|.+. .|.+.+.|++++..+....  ++.+.....     ..+|.|.+++.+|+|.|+|.|.|   
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~--~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~~---   87 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSS--KVRVEAVGC-----TRRLVVQQAGQAEAGEYSCEAGG---   87 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCS--SEEEEEETT-----EEEEEETTCCTTTCSCEEEEETT---
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCC--CEEEEEcCC-----EEEEEECCCCcccCEEEEEEcCC---
Confidence            456789999999999998 8899999999887664433  333332221     24699999999999999999954   


Q ss_pred             eeEEEEEEEeecCC
Q psy12803        457 IAKGSLILFESNAK  470 (902)
Q Consensus       457 ~~~~s~~L~V~~~p  470 (902)
                       ...++.|.|..++
T Consensus        88 -~~~~~~l~V~~p~  100 (102)
T 2eo1_A           88 -QQLSFRLQVAGQC  100 (102)
T ss_dssp             -EECCEEEEEESCC
T ss_pred             -CcEEEEEEEeCCC
Confidence             4566788877653

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.65  E-value=2.1e-08  Score=102.95  Aligned_cols=86  Identities=16%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      ..+.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...          ..      .+|.|.+++.+|+|.|
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~----------~~------~~L~i~~v~~~d~G~Y   80 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG----------NT------SELIFNAVHVKDAGFY   80 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC----------CS------SEEEETTCCGGGCEEE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC----------CC------CEEEEccCChhhCeEe
Confidence            4678888899999999999999999999999999999987655321          11      2499999999999999


Q ss_pred             EEEEEeCCcee-EEEEEEEeecC
Q psy12803        448 RCISKNEVDIA-KGSLILFESNA  469 (902)
Q Consensus       448 tC~A~N~~G~~-~~s~~L~V~~~  469 (902)
                      +|.|.|..+.. +..+.|.|...
T Consensus        81 ~C~~~n~~~~~~s~~~~l~V~~~  103 (218)
T 3k0w_A           81 VCRVNNNFTFEFSQWSQLDVCDI  103 (218)
T ss_dssp             EEEEECTTCCEECCCEEEEEECC
T ss_pred             EEEEEcCCCCceeeEEEEEEEcc
Confidence            99999998865 55577777654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.65  E-value=1.9e-08  Score=100.56  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.+...+.. .+.+|++++|.|.+.+ |.+.+.|++++...           ....      ..|.|.+++.+|+|.|
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-----------~~~~------~~L~i~~v~~~D~G~Y   67 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-----------YQDQ------AVLFIPAMKRSLAGRY   67 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC-----------EESS------SEEEESSCCGGGCEEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc-----------cCcc------cEEEECcCChhhCceE
Confidence            46778777764 7899999999999988 78899999987651           0111      2399999999999999


Q ss_pred             EEEEEeCCcee--EEEEEEEeec
Q psy12803        448 RCISKNEVDIA--KGSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~--~~s~~L~V~~  468 (902)
                      +|.|.|..|..  +..+.|.|..
T Consensus        68 ~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           68 RCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             EEEEEETTEEBCCCCCEEEEEES
T ss_pred             EEEEEcCCCccCCCCCEEEEecC
Confidence            99999988743  4556777754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.64  E-value=8.8e-08  Score=113.79  Aligned_cols=93  Identities=24%  Similarity=0.276  Sum_probs=78.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      ..|.+...+....+.+|+++.|.|.+.|.|.|+|+|++++..+..  +.++.+.....     ..+|.|.++..+|+|.|
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~--s~~~~i~~~~~-----~~~L~I~~~~~~D~G~Y  553 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ--SVKYMKRYNGN-----DYGLTINRVKGDDKGEY  553 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCS--SSSEEEEEETT-----EEEEEECSCCGGGCEEE
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEccc--CCcEEEEEcCC-----EEEEEEcCCCcccCcEE
Confidence            578888888889999999999999999999999999998877754  33444443332     34599999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|+.++.+.|.|.
T Consensus       554 t~~A~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          554 TVRAKNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEEEC
Confidence            99999999999999999873

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.64  E-value=3.6e-08  Score=102.00  Aligned_cols=94  Identities=12%  Similarity=0.148  Sum_probs=66.5

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+. ..+.+|++|+|.|.+.+ +.+.+.|++++..+..... ... ......    ..+|.|.+++.+|+|.|
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~-~~~~~~----~~~L~I~~v~~~D~G~Y   79 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRL-KFWNET----DPEFVIDHMDANKAGRY   79 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EEC-C----C----CCEEEECSCCGGGCEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccC-CCCcce----eeEEEEcccccccCEEE
Confidence            4677887776 47899999999999987 6789999998876643221 110 001111    01499999999999999


Q ss_pred             EEEEEeCCcee--EEEEEEEeecC
Q psy12803        448 RCISKNEVDIA--KGSLILFESNA  469 (902)
Q Consensus       448 tC~A~N~~G~~--~~s~~L~V~~~  469 (902)
                      +|.|.|..|..  +..+.|.|...
T Consensus        80 ~C~a~n~~~~~~~s~~~~l~V~~~  103 (218)
T 1uct_A           80 QCQYRIGHYRFRYSDTLELVVTGL  103 (218)
T ss_dssp             EEEEEETTTEEEECCCEEEEEECS
T ss_pred             EEEEEcCCCceeecCCEEEEEcCc
Confidence            99999987643  34567777653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.64  E-value=9.8e-09  Score=103.64  Aligned_cols=92  Identities=17%  Similarity=0.130  Sum_probs=67.3

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+. ..+.+|++++|.|.+.+.|. .+.|++++..+.......  ......      .+|.|.+++.+|+|.|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~--~~~~~~------~~L~i~~v~~~D~G~Y   73 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP--QELVKK------GQFPIPSITWEHTGRY   73 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC--HHHHTT------TEEEESSCCGGGCEEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc--ccCCcc------cEEEECCCCHHHCeEE
Confidence            3678877776 47899999999999999876 799999887653211110  001111      2499999999999999


Q ss_pred             EEEEEeCC-c--eeEEEEEEEeecC
Q psy12803        448 RCISKNEV-D--IAKGSLILFESNA  469 (902)
Q Consensus       448 tC~A~N~~-G--~~~~s~~L~V~~~  469 (902)
                      +|.|.|.. |  ..+..+.|.|...
T Consensus        74 ~C~a~n~~~g~~~~s~~~~l~V~~~   98 (198)
T 1ugn_A           74 RCYYGSDTAGRSESSDPLELVVTGA   98 (198)
T ss_dssp             EEEEEETTTEECCCCCCEEEEEECS
T ss_pred             EEEEECCCCCcccCCccEEEEEccc
Confidence            99999988 6  3356677888763

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.64  E-value=4.7e-09  Score=98.02  Aligned_cols=82  Identities=27%  Similarity=0.378  Sum_probs=61.5

Q ss_pred             CcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCcccee---c-c---CCcEEEE
Q psy12803        280 TSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSA---V-A---SSTLNFT  351 (902)
Q Consensus       280 ~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~---~-~---~~sL~I~  351 (902)
                      .+.+..+|.+..      +..+.+.+|+++.|.|.+.|.|.|. |.|++++..+......+...   . .   ..+|.|.
T Consensus         8 ~l~V~~~P~i~~------~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~   81 (122)
T 2cry_A            8 TLTVNGPPIISS------TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS   81 (122)
T ss_dssp             CCCCCSSCCEEE------ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred             EEEEecCCCccC------CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEc
Confidence            555666776532      4556789999999999999999998 99999877654321122222   1 1   2389999


Q ss_pred             eeeeecC-ceeEEeecC
Q psy12803        352 RINRINM-GAYMCLADN  367 (902)
Q Consensus       352 ~Vt~~Ds-G~YtC~A~N  367 (902)
                      +++.+|+ |.|+|.|.|
T Consensus        82 ~v~~~D~~G~Y~C~a~N   98 (122)
T 2cry_A           82 NIVRADFQTIYNCTAWN   98 (122)
T ss_dssp             TCCHHHHHSCEEEEEEC
T ss_pred             CCChhhCCceEEEEEEC
Confidence            9999999 999999999

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.63  E-value=1.8e-08  Score=95.44  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec--------cCCcEEEEeeeeecCceeEEeecC
Q psy12803        305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--------ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..+.|.|.+.|+|.|.|+|+|++..+...........        ..++|.|.+++.+|+|.|+|+|.|
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N   84 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEE
Confidence            677899999999999999999998766544332111111        135799999999999999999999

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.63  E-value=9.5e-08  Score=95.20  Aligned_cols=85  Identities=19%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             eeeeecCceEEEEEEeec--cCCceEEEEecCCeeee--------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        378 RVGVPIGRTATLECEVEA--FPLSVRYWEFIDGTLIE--------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g--~P~P~v~W~k~~~~l~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+.+.+|+++.|.|....  .|.+.|.|++++..+..        ....++.+  ..+++      |.|.+++.+|+|.|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~gs------L~I~~v~~~D~G~Y   76 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANGD------LKIKNLTRDDSGTY   76 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTSC------EEESSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCCc------EEEcccccccCEEE
Confidence            467889999999995433  56789999998754431        11223333  12233      99999999999999


Q ss_pred             EEEEEeCCcee--EEEEEEEeecCC
Q psy12803        448 RCISKNEVDIA--KGSLILFESNAK  470 (902)
Q Consensus       448 tC~A~N~~G~~--~~s~~L~V~~~p  470 (902)
                      +|.|.|..|..  +..+.|.|...+
T Consensus        77 ~C~~~n~~g~~~~~~~~~l~V~~~~  101 (176)
T 1hng_A           77 NVTVYSTNGTRILNKALDLRILEMV  101 (176)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEECCC
T ss_pred             EEEEEeCCCCEEEEEEEEEEEeCCC
Confidence            99999999986  777888887643

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.63  E-value=1.5e-08  Score=88.66  Aligned_cols=60  Identities=17%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEee-eeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI-NRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~V-t~~DsG~YtC~A~N  367 (902)
                      ++..++.+|++|+|.|.+.|.|.  |+|+|++..+.. .       .+++|+|.+| +.+|+|.|+|.|.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~-~-------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQ-K-------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTT-C-------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcC-C-------CCCEEEECccCccCcCEEEEEEEcc
Confidence            44567889999999999999883  999997765421 1       4568999996 78999999999975

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.62  E-value=1.9e-08  Score=92.82  Aligned_cols=71  Identities=31%  Similarity=0.560  Sum_probs=53.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC---ccceeccCCcEEEE-----eeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS---WKDSAVASSTLNFT-----RINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~---~~~~~~~~~sL~I~-----~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|++++|.|.+.|.|.|.++|+|++..+.....   .......++.+.+.     +++.+|+|.|+|.|.|
T Consensus        15 ~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N   93 (117)
T 2v9t_A           15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN   93 (117)
T ss_dssp             CCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEE
T ss_pred             CCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEe
Confidence            45678899999999999999999999999998765543221   12233344444444     5589999999999999

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.62  E-value=4.6e-08  Score=112.95  Aligned_cols=85  Identities=20%  Similarity=0.318  Sum_probs=67.7

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC-CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD-GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~-~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      .+..+.+.+|++++|.|.+.|.|.|.|.|++++..+.... ..++.+  ...++      |.|.+++.+|+|.|+|+|.|
T Consensus       391 ~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~--~~~~~------L~i~~v~~~d~G~Y~C~a~N  462 (477)
T 2id5_A          391 KAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV--FPDGT------LEVRYAQVQDNGTYLCIAAN  462 (477)
T ss_dssp             SCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEE--CTTSC------EEESSCCSTTCEEEEEEEEE
T ss_pred             ccccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEe--CCCCE------EEEeeCChHHCEEEEEEEEe
Confidence            4567889999999999999999999999999887764321 122222  22233      99999999999999999999


Q ss_pred             CCceeEEEEEEEee
Q psy12803        454 EVDIAKGSLILFES  467 (902)
Q Consensus       454 ~~G~~~~s~~L~V~  467 (902)
                      ..|.++.++.|.|.
T Consensus       463 ~~g~~~~~~~l~V~  476 (477)
T 2id5_A          463 AGGNDSMPAHLHVR  476 (477)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99999999999886

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.62  E-value=2.3e-08  Score=88.79  Aligned_cols=67  Identities=18%  Similarity=0.344  Sum_probs=52.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+.++.+.+|+++.|.|.+.+  .|.+.|+|++..+...   ......+++|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   73 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN---NRTVLIGEYLQIKGATPRDSGLYACTAART   73 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC---SSEEEETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC---ceEEEeCCEEEECcCCcccCEEEEEEEccC
Confidence            455678999999999999997  4799999977654322   123334678999999999999999999983

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.61  E-value=2.9e-08  Score=93.06  Aligned_cols=71  Identities=24%  Similarity=0.415  Sum_probs=55.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc------CCccceec----cCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSAV----ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~~----~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++.+.+|++|+|.|.+.+.|.+.+.|++.+..++..      ...+....    ...+|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   87 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS   87 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence            44578999999999999999999999999877654321      11122221    235899999999999999999988


Q ss_pred             C
Q psy12803        368 V  368 (902)
Q Consensus       368 ~  368 (902)
                      .
T Consensus        88 ~   88 (124)
T 3rbg_A           88 D   88 (124)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.61  E-value=2.7e-07  Score=87.96  Aligned_cols=96  Identities=15%  Similarity=0.125  Sum_probs=65.8

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCC---ceEEEEecCCe--eee-cC------------CceEEEeecCCCceeeEeEE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGT--LIE-HD------------GVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~--l~~-~~------------~~~~~~~~~~~~s~~~~stL  434 (902)
                      ...+..+.+.+|++++|.|.+.+.+.   +.|.|++.+..  +.. ..            ..++.+....  ......+|
T Consensus        10 ~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~sL   87 (139)
T 1pko_A           10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES--IGEGKVAL   87 (139)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTT--GGGTEEEE
T ss_pred             ECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEcccc--ccCCeEEE
Confidence            33455678999999999999987653   68999987641  110 00            1122221110  00113569


Q ss_pred             EEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        435 NISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      .|.+++.+|+|.|+|.+.|..+..+..+.|.|..+.
T Consensus        88 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P~  123 (139)
T 1pko_A           88 RIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  123 (139)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecCc
Confidence            999999999999999999999988899999998543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.61  E-value=7.4e-08  Score=88.38  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=52.6

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.++.+.+|+++.|.|.+.+.  |.+.|+|++..+....  +.....++   .|.|.+++.+|+|.|+|.|.+
T Consensus        24 ~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   94 (113)
T 2edh_A           24 EGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGD--RHSLRQDGARCELQIRGLVAEDAGEYLCMCGK   94 (113)
T ss_dssp             ECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSS--SEEEEEETTEEEEEECSCCSTTCEEEEEEETT
T ss_pred             ccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCC--cEEEEECCCEEEEEECCCChhhCEEEEEEeCC
Confidence            34567889999999999999875  7899999877654332  22223333   799999999999999999844

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=3.2e-08  Score=88.97  Aligned_cols=67  Identities=16%  Similarity=0.322  Sum_probs=52.9

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC---CcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS---STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++.+.+|++++|.|.+. .|.+.+.|+|++..+.....  .....+   ..|+|.+++.+|+|.|+|.|.|
T Consensus        18 ~~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           18 HREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSK--VRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             CEEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSS--EEEEEETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             cccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCC--EEEEEcCCEEEEEECCCCcccCEEEEEEcCC
Confidence            3457899999999999998 89999999998766543322  222222   4899999999999999999976

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=4.9e-08  Score=89.38  Aligned_cols=65  Identities=15%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+.+|+++.|.|.+. .|.+.+.|+|++..+...... ......  .+|.|.+++.+|+|.|+|.|.|
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPAL-LLQKEDTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTB-EEEECSSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCE-EEEECCCEEEEEECCCCcccCEEEEEEEec
Confidence            6788999999999996 789999999977654432221 112222  4899999999999999999988

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.58  E-value=6e-08  Score=97.84  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=64.7

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec-----------------CCceEEEeecCCCceeeEeEEEE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH-----------------DGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~-----------------~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +.+..+.+.+|+++.|.|.+.+.|.+.+.|++++......                 ...++.+.  .+.      +|.|
T Consensus         4 i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~--~~~------~L~i   75 (208)
T 3r4d_A            4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY--SNG------SLLF   75 (208)
T ss_dssp             EEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC--TTS------CEEE
T ss_pred             ccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe--cCC------eEEE
Confidence            3444567899999999999888899999998764321110                 01111111  122      3999


Q ss_pred             eccCCCCCeEEEEEEEeCC-ceeEEEEEEEeecCCC
Q psy12803        437 SNVNISDFDTYRCISKNEV-DIAKGSLILFESNAKT  471 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~-G~~~~s~~L~V~~~p~  471 (902)
                      .+++.+|+|.|+|.+.|.. +.....+.|.|...+.
T Consensus        76 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~  111 (208)
T 3r4d_A           76 QMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVT  111 (208)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCC
T ss_pred             ccccccCCeEEEEEEEcccCceeEEEEEEEeccCCC
Confidence            9999999999999999985 6677888888876544

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.58  E-value=1.4e-07  Score=96.78  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      |.|... .++.+.+|+.+.|.|.+.+ .|.|.|.|++++..+......++.. ....+    ..+|.|.+++.+|+|.|+
T Consensus         4 p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~-~~~~g----~~~L~I~~v~~~D~G~Y~   77 (207)
T 3rbs_A            4 PFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI-DRNTG----IIEMFMEKLQDEDEGTYT   77 (207)
T ss_dssp             --CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEE-CTTTC----EEEEEESCCCGGGCEEEE
T ss_pred             CeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEE-eCCCC----EEEEEECCCChhhCEEEE
Confidence            445443 3578999999999999974 7999999999988775544333332 11111    245999999999999999


Q ss_pred             EEEEeCCceeEEEEEE
Q psy12803        449 CISKNEVDIAKGSLIL  464 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L  464 (902)
                      |.|.|  |.+...+.+
T Consensus        78 C~a~N--g~a~~~~~~   91 (207)
T 3rbs_A           78 FQLQD--GKATNHSTV   91 (207)
T ss_dssp             EEEEE--TTEEEEEEE
T ss_pred             EEEEC--CCeEEEEEE
Confidence            99999  555444444

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.57  E-value=4.1e-08  Score=88.60  Aligned_cols=73  Identities=15%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCcccccCC---ccceec------cCCcEEEEeeeeecCceeEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENKPITLGS---WKDSAV------ASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~~~~~~~---~~~~~~------~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      ..+.++.+.+|++++|.|.+.+  .+.+.+.|+|++..+.....   .+....      ..++|.|.+++.+|+|.|+|.
T Consensus        15 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   94 (112)
T 3so5_A           15 VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCV   94 (112)
T ss_dssp             ECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEE
T ss_pred             eCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEE
Confidence            3456688999999999999985  45689999998765432211   011111      136899999999999999999


Q ss_pred             ecCC
Q psy12803        365 ADNV  368 (902)
Q Consensus       365 A~N~  368 (902)
                      |.|.
T Consensus        95 a~n~   98 (112)
T 3so5_A           95 ISNH   98 (112)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            9883

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.56  E-value=4.6e-08  Score=90.61  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=55.3

Q ss_pred             cccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-----ccCCcEEEEeeee
Q psy12803        281 SQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-----VASSTLNFTRINR  355 (902)
Q Consensus       281 ~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-----~~~~sL~I~~Vt~  355 (902)
                      +.+.++|.+.....      ..  ..+.+.|.|.+.|+|.|.++|+|++..+..........     ...++|.|.+++.
T Consensus         3 L~V~~pP~i~~~~~------~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~   74 (118)
T 1wwc_A            3 LTVYYPPRVVSLEE------PE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH   74 (118)
T ss_dssp             -CCCCCCCCCCCCC------CC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCG
T ss_pred             EEEecCCceeccCC------Ce--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCCh
Confidence            45666776643321      11  22667899999999999999999876654433222111     1345899999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|+|.|.|
T Consensus        75 ~d~G~Y~C~a~N   86 (118)
T 1wwc_A           75 YNNGNYTLIAKN   86 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hcCEEEEEEEEC
Confidence            999999999998

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.56  E-value=1.7e-07  Score=86.42  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             cCceeeeecCceEEEEEEeeccCC----ceEEEEecCC-------eeee-cC-----------CceEEEeecCCCceeeE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPL----SVRYWEFIDG-------TLIE-HD-----------GVKYSISDVDKGSYQYI  431 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~----P~v~W~k~~~-------~l~~-~~-----------~~~~~~~~~~~~s~~~~  431 (902)
                      .+..+.+.+|++++|.|.+.+.+.    +.+.|++.+.       .+.. ..           ..++.+....  .....
T Consensus        11 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~   88 (126)
T 1eaj_A           11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND--LKSGD   88 (126)
T ss_dssp             SEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC--GGGTB
T ss_pred             CCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEccc--ccCCe
Confidence            445678999999999999987764    4599998752       1111 11           1122221110  00012


Q ss_pred             eEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        432 MQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      .+|.|.+++.+|+|.|+|.+.|..+.....+.|.|..
T Consensus        89 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           89 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            4599999999999999999999999888999998864

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.56  E-value=2.7e-07  Score=84.37  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=62.2

Q ss_pred             cCceeeeecCceEEEEEEee-ccCCc----eEEEEecCCee---eec--------CCceEEEeecCCCceeeEeEEEEec
Q psy12803        375 RNRRVGVPIGRTATLECEVE-AFPLS----VRYWEFIDGTL---IEH--------DGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~-g~P~P----~v~W~k~~~~l---~~~--------~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .+..+.+.+|++++|.|.+. +.+.+    .+.|++.+...   ...        ...++.+............+|.|.+
T Consensus         6 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (118)
T 3udw_C            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECS
T ss_pred             CCCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEee
Confidence            34457899999999999994 44444    49999874221   100        0122222211000000033599999


Q ss_pred             cCCCCCeEEEEEEEe-CCceeEEEEEEEeecCC
Q psy12803        439 VNISDFDTYRCISKN-EVDIAKGSLILFESNAK  470 (902)
Q Consensus       439 V~~~DsG~YtC~A~N-~~G~~~~s~~L~V~~~p  470 (902)
                      ++.+|+|.|+|.+.| ..+.....+.|.|..+|
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             cChHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            999999999999999 88888888999887643

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.97  E-value=7.7e-09  Score=104.87  Aligned_cols=143  Identities=13%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCC----ccc-cc-------CCccceec-----cCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN----KPI-TL-------GSWKDSAV-----ASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~----~~~-~~-------~~~~~~~~-----~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|.+.+.+.+.+.|+|...    ..+ ..       ...+....     ...+|+|.+++.+|+|.
T Consensus         7 p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~   86 (185)
T 3c6l_A            7 PQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSAT   86 (185)
Confidence            456789999999999999876666899998642    111 10       01122211     23479999999999999


Q ss_pred             eEEeecCC------CCEEEEcC------ceeee--ecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCC
Q psy12803        361 YMCLADNV------PPQILIRN------RRVGV--PIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDK  425 (902)
Q Consensus       361 YtC~A~N~------~P~i~~~p------~~~~v--~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~  425 (902)
                      |.|.+.+.      .-.+.+..      ..+.+  ...+.++|.|.+.+ +|.|.|.|......+ ..+.......    
T Consensus        87 Y~C~~~~~~~~fg~gT~L~V~~~~~~~~P~V~~~~~~~~~vtL~C~~~gf~P~p~v~~~~~~~~~-~~~~~~~~~~----  161 (185)
T 3c6l_A           87 YFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTF-ITDKTVLDMK----  161 (185)
Confidence            99998650      00111100      01111  11227899999988 589999996544333 2222211111    


Q ss_pred             CceeeEeEEEEeccCCCCCe-EEEEE
Q psy12803        426 GSYQYIMQLNISNVNISDFD-TYRCI  450 (902)
Q Consensus       426 ~s~~~~stL~I~~V~~~DsG-~YtC~  450 (902)
                           .+.|.+..+..=|.+ +++|.
T Consensus       162 -----~~~~~~~~~~~w~~~~~~~c~  182 (185)
T 3c6l_A          162 -----AMDSKSNGAIAWSNQTSFTCQ  182 (185)
Confidence                 223666666544444 66674

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.6e-07  Score=87.11  Aligned_cols=70  Identities=9%  Similarity=0.051  Sum_probs=54.0

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCc--------cceeccCC---cEEEEeeeeecCceeE
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--------KDSAVASS---TLNFTRINRINMGAYM  362 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~--------~~~~~~~~---sL~I~~Vt~~DsG~Yt  362 (902)
                      ++..+.++.+.+|++++|.|.+++  .+.++|+|++..+......        +.....++   +|+|.+++.+|+|.|+
T Consensus        11 ~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~   88 (112)
T 2e6q_A           11 LVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALV   88 (112)
T ss_dssp             EEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEE
T ss_pred             EecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEE
Confidence            345678899999999999999998  6789999988776544310        33333333   7999999999999997


Q ss_pred             E-ee
Q psy12803        363 C-LA  365 (902)
Q Consensus       363 C-~A  365 (902)
                      | .+
T Consensus        89 ~~~~   92 (112)
T 2e6q_A           89 GFSC   92 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7 44

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.55  E-value=2.9e-07  Score=112.27  Aligned_cols=158  Identities=11%  Similarity=0.151  Sum_probs=98.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceE-Ee--cCCCcccccCCcccee--ccCCcEEEEeeeeecCceeEEeecCC---
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSII-WK--TSENKPITLGSWKDSA--VASSTLNFTRINRINMGAYMCLADNV---  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~-W~--k~~~~~~~~~~~~~~~--~~~~sL~I~~Vt~~DsG~YtC~A~N~---  368 (902)
                      .+.++.+.+|++++|.|.+.|.|.|.+. |+  +++..+.. .......  ...++|.|.+++.+|+|.|+|.|.|.   
T Consensus       170 ~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~  248 (731)
T 2v5y_A          170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL-KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV  248 (731)
T ss_dssp             CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEE-EEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEE
T ss_pred             cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccc-cceEEeccccceEEEEEcccccccCeEEEEEEECCCCC
Confidence            4567899999999999999999999998 88  55544322 1111110  11358999999999999999999991   


Q ss_pred             ----CCEEEE--cC-----ceeeeecCceEEEEEEeecc----CCc--eEEEEecCCeeeecCCceEEEeecCCCceeeE
Q psy12803        369 ----PPQILI--RN-----RRVGVPIGRTATLECEVEAF----PLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       369 ----~P~i~~--~p-----~~~~v~~G~~v~L~C~a~g~----P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~  431 (902)
                          ...+.+  .+     ..........+.|.|.....    |..  .|.|...+...     .  .+.....      
T Consensus       249 ~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~-----~--~~~~~~~------  315 (731)
T 2v5y_A          249 GISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW-----N--DRQPVDS------  315 (731)
T ss_dssp             EECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSC-----E--EEEECCS------
T ss_pred             cceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCc-----e--EEeccCc------
Confidence                111111  11     11222334678888875322    211  45664432211     1  1111111      


Q ss_pred             eEEEEeccCCCCCeEEEEEEE--eCCceeEEEEEEEeec
Q psy12803        432 MQLNISNVNISDFDTYRCISK--NEVDIAKGSLILFESN  468 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~--N~~G~~~~s~~L~V~~  468 (902)
                      .++.|.++...+...|+|.|.  |..|....+..+.+..
T Consensus       316 ~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t  354 (731)
T 2v5y_A          316 TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRT  354 (731)
T ss_dssp             SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEEC
T ss_pred             ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeee
Confidence            248999999999889999999  9998775444344443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=1.6e-07  Score=84.55  Aligned_cols=67  Identities=15%  Similarity=0.373  Sum_probs=52.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      .+.++.+.+|++++|.|.+ +.|.+.|.|+|++..+.....  .....++   .|.|.+++.+|+|.|+|.+.
T Consensus        14 ~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g   83 (103)
T 2dku_A           14 ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGK--HQPSQEGLTLRLTISALEKADSDTYTCDIG   83 (103)
T ss_dssp             CCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSS--EEEEEETTEEEEEEESCCTTTCSEEEEECS
T ss_pred             cCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCe--EEEEeCCCEEEEEECCCCcccCEEEEEEeC
Confidence            4567889999999999994 789999999998876543322  2222233   89999999999999999843

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.52  E-value=8.9e-08  Score=96.38  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             EEcCceeeeecCceEEEEEEeeccC----CceEEEEecCCe-------ee-ecC-----------CceEEEeecCCCcee
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFP----LSVRYWEFIDGT-------LI-EHD-----------GVKYSISDVDKGSYQ  429 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~~~-------l~-~~~-----------~~~~~~~~~~~~s~~  429 (902)
                      ...+..+.+.+|+++.|.|.+.+.|    .+.+.|++.+..       +. ...           ..++.+...  ....
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~   81 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN--DVKS   81 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCS--CGGG
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEecc--CccC
Confidence            3445667899999999999999887    469999884311       11 011           111221110  0000


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      ...+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++..
T Consensus        82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~  124 (214)
T 3jz7_A           82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG  124 (214)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBS
T ss_pred             CcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCC
Confidence            1234999999999999999999999999999999999876554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.52  E-value=2.4e-07  Score=88.44  Aligned_cols=93  Identities=14%  Similarity=0.117  Sum_probs=64.0

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      .+...+..+.+.+|++++|.|.+.+.  +.+.|+++.  ..  ++.....++.+....     ...+|.|.+++.+|+|.
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~-----~~~~L~I~~~~~~DsG~   91 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNG-----SVYTLTIQNIQYEDNGI   91 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEET-----TEEEEEECSCCGGGCEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCC-----CEEEEEECCCChHHCEE
Confidence            45566778889999999999999987  899999873  21  222233444443322     13569999999999999


Q ss_pred             EEEEEEeCCce----eEEEEEEEeecCC
Q psy12803        447 YRCISKNEVDI----AKGSLILFESNAK  470 (902)
Q Consensus       447 YtC~A~N~~G~----~~~s~~L~V~~~p  470 (902)
                      |.|.|.|..|.    ......|.|...+
T Consensus        92 Y~C~a~n~~g~~~~~~g~gt~L~V~~~p  119 (133)
T 3khq_A           92 YFCKQKCDSANHNVTDSCGTELLVLGFS  119 (133)
T ss_dssp             EEEEESSCC-------CCCEEEEEC---
T ss_pred             EEEEEEeCCCCcceeECCCEEEEEEecc
Confidence            99999998763    2345677777643

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.50  E-value=1e-07  Score=94.26  Aligned_cols=81  Identities=15%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      .+|.+...+..+.+.+|++++|.|.+.+.|.+. +.|++++..+..           ..      .+|.|.+++.+|+|.
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-----------~~------~~L~i~~~~~~d~G~   68 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-----------QA------SSYFIDAATVNDSGE   68 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-----------SC------SEEEESSCCGGGCEE
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-----------Cc------eEEEEeCCCcccCEE
Confidence            467888888888899999999999999998876 789988765532           11      249999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEee
Q psy12803        447 YRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |+|.|.|..++.  .+.|.|.
T Consensus        69 Y~C~~~n~~~s~--~~~l~V~   87 (175)
T 1fnl_A           69 YRCQTNLSTLSD--PVQLEVH   87 (175)
T ss_dssp             EEEECSSSCCCC--CEEEEEE
T ss_pred             EEEEeeCCcccc--cEEEEEe
Confidence            999999976644  4555555

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.50  E-value=7.3e-08  Score=96.63  Aligned_cols=90  Identities=16%  Similarity=0.096  Sum_probs=65.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+.. .+.+|++|+|.|.+.+. .+.+.|++++..+.......        .......+|.|.+++.+|+|.|+
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~--------~~~~~~~~L~I~~v~~~D~G~Y~   73 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKP--------PERINKVKFYIPDMNSRMAGQYS   73 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSS--------CTTCCEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccccc--------CCCcceeEEEeCcCCcccCeEEE
Confidence            5778877766 78999999999998764 47899998876654211100        00112346999999999999999


Q ss_pred             EEEEeCCcee--EEEEEEEeec
Q psy12803        449 CISKNEVDIA--KGSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~--~~s~~L~V~~  468 (902)
                      |.|.|..+..  +..+.|.|..
T Consensus        74 C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           74 CIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             EEEEETTEECCCCCCEEEEEES
T ss_pred             EEecCCCCCCCCCCceEEEecc
Confidence            9999976543  4566777765

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.50  E-value=5.1e-07  Score=84.01  Aligned_cols=90  Identities=16%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             cCceeeeecCceEEEEEEeec--cCCceEEEEecCCeeeec-C----------CceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        375 RNRRVGVPIGRTATLECEVEA--FPLSVRYWEFIDGTLIEH-D----------GVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g--~P~P~v~W~k~~~~l~~~-~----------~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .+..+.+.+|++++|.|.+.+  .+...|.|++.+..+... .          ..++.+  ..+      .+|.|.+++.
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~--~~~------~sL~I~~v~~   80 (117)
T 3q0h_A            9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP--GPG------LGLTLQSLTV   80 (117)
T ss_dssp             ESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE--CST------TCEEECSCCG
T ss_pred             ccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe--CCc------eEEEEeeCCh
Confidence            345578999999999999987  334579999876433211 0          112222  112      2499999999


Q ss_pred             CCCeEEEEEEE-eCCceeEEEEEEEeecCCCC
Q psy12803        442 SDFDTYRCISK-NEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       442 ~DsG~YtC~A~-N~~G~~~~s~~L~V~~~p~~  472 (902)
                      +|+|.|+|.+. +..|..+..+.|.|..+|.+
T Consensus        81 ~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           81 NDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA  112 (117)
T ss_dssp             GGCEEEEEEEEEETTCCEEEEEEEEEECC---
T ss_pred             hhCEEEEEEEEECCCCCeEEEEEEEEEccCcc
Confidence            99999999975 46788899999999877654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.50  E-value=1.3e-07  Score=96.65  Aligned_cols=84  Identities=14%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ..|.+...+....+.+|++++|.|.+.+.|.+. +.|++++..+....                 .+|.|.+++.+|+|.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-----------------~~L~i~~v~~~D~G~   68 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-----------------SSYFIDAATVDDSGE   68 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-----------------SEEEESSCCGGGCEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-----------------cEEEEecccccCCEE
Confidence            356777778778899999999999999998876 99999876553211                 249999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|.|...  +..+.|.|...+
T Consensus        69 Y~C~a~n~~~--s~~~~l~V~~~p   90 (204)
T 3sgj_C           69 YRCQTQLSTL--SDPVQLEVHIGW   90 (204)
T ss_dssp             EEEEETTSBC--CCCEEEEEECSS
T ss_pred             EEEEeCCCcc--cccEEEEEecCc
Confidence            9999998543  445666666443

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.49  E-value=4.2e-07  Score=85.74  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             EEEcCceeeeecCceEEEEEEeec---cCCceEEEEecCCee----eec----------------------CC--ceEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEA---FPLSVRYWEFIDGTL----IEH----------------------DG--VKYSI  420 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g---~P~P~v~W~k~~~~l----~~~----------------------~~--~~~~~  420 (902)
                      +...+..+.+.+|++|+|.|.+..   .+.+.|.|++.....    +..                      ..  .++.+
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            344566788999999999999864   577899999876431    110                      00  12222


Q ss_pred             eecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC-----CceeEEEEEEEeec
Q psy12803        421 SDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE-----VDIAKGSLILFESN  468 (902)
Q Consensus       421 ~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~-----~G~~~~s~~L~V~~  468 (902)
                      ....      ..+|.|.+++.+|+|.|.|.+.|.     .|....++.|.|..
T Consensus        87 ~~~~------~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           87 ANLA------APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             SCTT------SCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             ecCC------CCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence            1111      135999999999999999999994     56677888888865

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.49  E-value=1.6e-07  Score=90.38  Aligned_cols=73  Identities=18%  Similarity=0.333  Sum_probs=54.1

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc------CCccceec----cCCcEEEEeeeeecCceeEEee
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSAV----ASSTLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~~----~~~sL~I~~Vt~~DsG~YtC~A  365 (902)
                      ..+.++++.+|++++|.|.+.+.|.+.+.|++.+...+..      ...+....    .+.+|+|.+++.+|+|.|+|.+
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  122 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI  122 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEE
Confidence            3566789999999999999999998999999643322111      11111111    2458999999999999999999


Q ss_pred             cCC
Q psy12803        366 DNV  368 (902)
Q Consensus       366 ~N~  368 (902)
                      .|.
T Consensus       123 ~n~  125 (145)
T 1z9m_A          123 FTM  125 (145)
T ss_dssp             CSS
T ss_pred             EcC
Confidence            885

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=98.48  E-value=1.3e-06  Score=91.32  Aligned_cols=152  Identities=18%  Similarity=0.303  Sum_probs=91.8

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc---cccCC-------ccceec---cCCcEEEEeeeeecCceeE
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP---ITLGS-------WKDSAV---ASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~---~~~~~-------~~~~~~---~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      |..+.+..|++|+|.|.+...-...+.|++..  ..+   +-...       .++.-.   .+-+|+|.+++.+|++.|.
T Consensus         8 P~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~A~Yy   87 (259)
T 4f9l_D            8 PSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDIATYY   87 (259)
T ss_dssp             CSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhCEEEE
Confidence            55677889999999999876444458898642  211   10000       111111   1226999999999999999


Q ss_pred             EeecC-C-----------------CCEEEE-------------------cCceeeeecCceEEEEEEeeccCCc--eEEE
Q psy12803        363 CLADN-V-----------------PPQILI-------------------RNRRVGVPIGRTATLECEVEAFPLS--VRYW  403 (902)
Q Consensus       363 C~A~N-~-----------------~P~i~~-------------------~p~~~~v~~G~~v~L~C~a~g~P~P--~v~W  403 (902)
                      |.... .                 .|....                   ....-.+..|++++|.|.+.|+...  .+.|
T Consensus        88 C~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~W  167 (259)
T 4f9l_D           88 CQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRYYLYW  167 (259)
T ss_dssp             EEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGSCEEE
T ss_pred             EeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccCcEEE
Confidence            97654 0                 111110                   0111236679999999999988643  5778


Q ss_pred             EecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        404 EFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       404 ~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      .+..  ..+     +. ..         ..++.+..+....   +..|.+.+++.+|.+.|.|...
T Consensus       168 vRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~n---t~yLqm~sL~~eDTAvYYCAr~  230 (259)
T 4f9l_D          168 VKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSR---TTYIQLSSLTSEDSAVYYCSRE  230 (259)
T ss_dssp             EEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTT---EEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEcccc---EEEEEECCCChHHCEEEEEEEe
Confidence            7532  211     11 01         1234444333322   3459999999999999999543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.48  E-value=7.1e-08  Score=98.83  Aligned_cols=92  Identities=16%  Similarity=0.234  Sum_probs=67.9

Q ss_pred             cCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeee----ec---CCc--eEEEe----------ecCCCceeeEeEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLI----EH---DGV--KYSIS----------DVDKGSYQYIMQL  434 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~----~~---~~~--~~~~~----------~~~~~s~~~~stL  434 (902)
                      .+..+.+.+|+++.|.|.+.+.|. +.+.|++++....    ..   ...  .-++.          ...++      .|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~------~L   79 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG------RL   79 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC------CE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc------eE
Confidence            466788999999999999999995 8999998654311    10   000  11111          12222      29


Q ss_pred             EEeccCCCCCeEEEEEEEeCC-ceeEEEEEEEeecCCCC
Q psy12803        435 NISNVNISDFDTYRCISKNEV-DIAKGSLILFESNAKTP  472 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~-G~~~~s~~L~V~~~p~~  472 (902)
                      .|.+++.+|+|.|+|.|.|.. +..+..+.|.|...+..
T Consensus        80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  118 (231)
T 2pet_A           80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA  118 (231)
T ss_dssp             EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCC
T ss_pred             EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCC
Confidence            999999999999999999997 88889999999876543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.48  E-value=3.7e-07  Score=92.60  Aligned_cols=92  Identities=17%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--eec--------CCceEEEeecCCCceeeEeEEEEec
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IEH--------DGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~~--------~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .+...+ .+.+.+|++++|.|.+.+.|.+.+.|++..  ..+  +..        ...++.+....     ...+|.|.+
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~   76 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSG-----NMATLTISK   76 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEESS
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecC-----CEEEEEECC
Confidence            344455 788999999999999999999999999832  111  100        11122222111     134699999


Q ss_pred             cCCCCCeEEEEEEEeCCc---eeEEEEEEEeec
Q psy12803        439 VNISDFDTYRCISKNEVD---IAKGSLILFESN  468 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G---~~~~s~~L~V~~  468 (902)
                      ++.+|+|.|+|.|.|..+   .....+.|.|..
T Consensus        77 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           77 AQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred             CChhhCEEEEEEeccCCcceeEEcCceEEEEeC
Confidence            999999999999999988   445666777764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.48  E-value=4.1e-07  Score=95.59  Aligned_cols=98  Identities=10%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc--CCceEEEEecC--Ce---eeecC------------CceEEEeecCCCcee
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF--PLSVRYWEFID--GT---LIEHD------------GVKYSISDVDKGSYQ  429 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~--~~---l~~~~------------~~~~~~~~~~~~s~~  429 (902)
                      ++.+...+..+.+.+|++|+|.|.+.+.  |.+.+.|++..  ..   +....            ..++.+......   
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~---   82 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA---   82 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT---
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCC---
Confidence            4566777888999999999999999884  67899998743  11   10000            122333211111   


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeC------------CceeEEEEEEEeecC
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNE------------VDIAKGSLILFESNA  469 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~------------~G~~~~s~~L~V~~~  469 (902)
                      ...+|.|.+++.+|+|.|.|.|.|.            .+.......|.|...
T Consensus        83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~  134 (256)
T 3juy_B           83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSG  134 (256)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSC
T ss_pred             CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCC
Confidence            1346999999999999999999997            333445566777654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.48  E-value=5.9e-08  Score=98.04  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=60.2

Q ss_pred             ecCceEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEE
Q psy12803        382 PIGRTATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG  460 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~  460 (902)
                      -.++.+.|.|.+.+. |.+.+.|++++..+....  ++.+.....     ..+|.|.+++.+|+|.|+|.|.|..+....
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~--~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~   87 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--RVKTGVTGE-----QIWLQINEPTPNDKGKYVMELFDGKTGHQK   87 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCS--SEEEEEETT-----EEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCC--eEEEEEeCC-----EEEEEECCCCcccCEEEEEEEecCCcceEE
Confidence            357788889988885 588999999887665433  333322221     245999999999999999999999999888


Q ss_pred             EEEEEee
Q psy12803        461 SLILFES  467 (902)
Q Consensus       461 s~~L~V~  467 (902)
                      ++.|.|.
T Consensus        88 ~~~l~v~   94 (212)
T 2r15_A           88 TVDLSGQ   94 (212)
T ss_dssp             EEEECHH
T ss_pred             EEEEEEe
Confidence            8888764

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.47  E-value=6e-07  Score=81.78  Aligned_cols=79  Identities=23%  Similarity=0.249  Sum_probs=57.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----e-eeec-------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----T-LIEH-------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~-l~~~-------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +...+..+.+.+|++|+|.|.+.+.|.+.+.|++...    . +...       ...++.+....     ...+|.|.++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG-----TDFTLTISSL   78 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS-----SEEEEEECSC
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecC-----CEEEEEECCC
Confidence            4556777889999999999999999989999998642    1 1111       01223322111     1346999999


Q ss_pred             CCCCCeEEEEEEEeCC
Q psy12803        440 NISDFDTYRCISKNEV  455 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~  455 (902)
                      +.+|+|.|.|.|.|..
T Consensus        79 ~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           79 EPEDFAMYICQQHNEY   94 (108)
T ss_dssp             CTTCCSEEEEEECSSS
T ss_pred             CHHHCEEEEEEEccCC
Confidence            9999999999999864

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.47  E-value=4.5e-07  Score=85.51  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             EcCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeee---ecC------------CceEEEeecCCCceeeEeEEE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLI---EHD------------GVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~---~~~------------~~~~~~~~~~~~s~~~~stL~  435 (902)
                      ..+..+...+|++|+|.|.+...+.   ..|.|++.+....   ...            ..+.......  ...-..+|.
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~--~~~g~~sL~   87 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQ--VIVGNASLR   87 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTT--GGGTBCCEE
T ss_pred             ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCC--ccCCeEEEE
Confidence            3444567889999999999865433   3689998653210   000            1112211110  001123599


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |.+|+.+|+|.|+|.+.|..|..++.+.|.|=
T Consensus        88 I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG  119 (125)
T 4gos_A           88 LKNVQLTDAGTYKCYIITSKGKGNANLEYKTG  119 (125)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEeCCCeEEEEEEEEEC
Confidence            99999999999999999999999999999873

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.47  E-value=6.9e-07  Score=80.97  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             ceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeec--CCc--eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        377 RRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEH--DGV--KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~--~~~--~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      ....+.+|+.+.|.|.+.+ .|.|.|+|.|.++..-..  ...  +....+..+.   ....|.|.+|..+|+|.|+|.|
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~---s~fiL~f~~V~~sDsG~YrCsA   98 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV---PVFVLHFKPIHLSDNGSYSCST   98 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSS---CEEEEEETTCCGGGCEEEEEEE
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCc---eeEEEEEeeEEEcCCccEEEEe
Confidence            3467889999999999976 589999999987532111  111  1122222221   2456999999999999999999


Q ss_pred             EeCCceeE-EEEEEEeec
Q psy12803        452 KNEVDIAK-GSLILFESN  468 (902)
Q Consensus       452 ~N~~G~~~-~s~~L~V~~  468 (902)
                      .|..|..+ .+..|.|.+
T Consensus        99 n~~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A           99 NFNSQVINSHSVTIHVRE  116 (122)
T ss_dssp             EETTEEEECCCEEEEEC-
T ss_pred             eCCCCceeeeEEEEEEEe
Confidence            99998775 344455543

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.46  E-value=6.6e-07  Score=82.78  Aligned_cols=87  Identities=16%  Similarity=-0.017  Sum_probs=60.4

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCCee-----ee------------cCCceEEEeecCCCceeeEeEEEE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTL-----IE------------HDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l-----~~------------~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +.+....+.+|++|.|.|.....+.+.+.|++.....     ..            ..+.+..+  ..+++      |.|
T Consensus         5 i~~~p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~--~~ngS------L~I   76 (111)
T 2qsq_A            5 IESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII--YPNAS------LLI   76 (111)
T ss_dssp             EEEESSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEE--CTTSC------EEE
T ss_pred             EEeccceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEE--ecCCc------EEE
Confidence            3344457899999999998643444579998865321     10            01222222  23344      999


Q ss_pred             eccCCCCCeEEEEEEEeCCc-eeEEEEEEEeec
Q psy12803        437 SNVNISDFDTYRCISKNEVD-IAKGSLILFESN  468 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G-~~~~s~~L~V~~  468 (902)
                      .+|+.+|+|.|+|.+.|..+ ..+.++.|.|..
T Consensus        77 ~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           77 QNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             CSCCGGGCEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             ccCcccCCeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            99999999999999999976 467888888864

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.46  E-value=4.6e-07  Score=96.00  Aligned_cols=111  Identities=17%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             eeeecCceeEEeecC--------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--ee--e-ec-CCc--
Q psy12803        353 INRINMGAYMCLADN--------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL--I-EH-DGV--  416 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N--------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l--~-~~-~~~--  416 (902)
                      .+++|.+.|.|.|.|        ....+...+..+.+.+|++|+|.|.+.+ +.+.|.|++...  .+  + .. ...  
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~   81 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVL   81 (270)
T ss_dssp             -------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCce
Confidence            467899999999998        3456666777889999999999999866 778999988321  11  0 00 000  


Q ss_pred             --------eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC----ceeEEEEEEEeec
Q psy12803        417 --------KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV----DIAKGSLILFESN  468 (902)
Q Consensus       417 --------~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~----G~~~~s~~L~V~~  468 (902)
                              ++.+.....    ...+|.|.+++.+|+|.|+|.+.|..    ........|.|..
T Consensus        82 ~~~~~~~~r~~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D           82 QQIDMTEKRFSAECPSN----SPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             EECHHHHHHEEEECCTT----SCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred             ecCCccCCcEEEEeCCC----cEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence                    233222111    13469999999999999999999743    2223444566654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.45  E-value=1.1e-07  Score=96.24  Aligned_cols=94  Identities=14%  Similarity=0.010  Sum_probs=65.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+. ..+.+|++++|.|.+. .|.+.+.|+|++..+....... ... .    ......|.|.+++.+|+|.|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~-~~~-~----~~~~~~l~I~~v~~~D~G~Y   78 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG-EHH-D----GVSKANFSISRMTQDLAGTY   78 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC-EEE-T----TEEEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeee-ecC-C----CCceEEEEeccCCcccCeEE
Confidence            3577777665 6688999999999997 4778999999887653211000 000 0    01234699999999999999


Q ss_pred             EEEEEeCC-----ceeEEEEEEEeecC
Q psy12803        448 RCISKNEV-----DIAKGSLILFESNA  469 (902)
Q Consensus       448 tC~A~N~~-----G~~~~s~~L~V~~~  469 (902)
                      +|.|.|..     ...+..+.|.|...
T Consensus        79 ~C~a~~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           79 RCYGSVTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             EEEEEBTTBTTCCCCCCCCEEEEEECS
T ss_pred             EEeEecCCCCccccCCCCCEEEEeecc
Confidence            99998753     22345667777654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.45  E-value=7.5e-07  Score=91.97  Aligned_cols=81  Identities=19%  Similarity=0.259  Sum_probs=64.8

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      +.+.+|++++|+|.+ +.|.|  .|.|++.+..+   ..  .... ..      ...|.|.+|+.+|+|.|.|.|.|..+
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~-~~------~~~L~I~~v~~~d~G~Y~C~a~n~~~   83 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSD-TG------RSVLTVRNASLSAAGTRVCVGSCGGR   83 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEE-SS------EEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEec-CC------ccEEEECccCcccCceEEEEEEeCCC
Confidence            689999999999999 99888  99998865433   11  1111 11      24599999999999999999999999


Q ss_pred             eeEEEEEEEeecCCCC
Q psy12803        457 IAKGSLILFESNAKTP  472 (902)
Q Consensus       457 ~~~~s~~L~V~~~p~~  472 (902)
                      .....+.|.|..+|..
T Consensus        84 ~~~~~~~ltV~~~P~~   99 (210)
T 1gsm_A           84 TFQHTVQLLVYAFPNQ   99 (210)
T ss_dssp             EEEEEEEEEEEBCCSE
T ss_pred             ceEEEEEEEEEecCCC
Confidence            9889999999876643

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.45  E-value=2.5e-07  Score=84.37  Aligned_cols=72  Identities=19%  Similarity=0.345  Sum_probs=53.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cc--cc-c-------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KP--IT-L-------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~--~~-~-------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.+.+.|.+.+.|+|...  .+  +. .       ...+....   ...+|+|.+++.+|+|.|
T Consensus         7 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   86 (108)
T 1jhl_L            7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             cCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEE
Confidence            4566889999999999999998889999998642  11  11 0       01122211   124799999999999999


Q ss_pred             EEeecCC
Q psy12803        362 MCLADNV  368 (902)
Q Consensus       362 tC~A~N~  368 (902)
                      .|.|.|.
T Consensus        87 ~C~~~n~   93 (108)
T 1jhl_L           87 ICQQHNE   93 (108)
T ss_dssp             EEEECSS
T ss_pred             EEEEccC
Confidence            9999884

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.45  E-value=3.3e-07  Score=95.48  Aligned_cols=91  Identities=15%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CceeeeecCceEEEEEEeeccC--CceEEEEecCC--ee--ee-------------cCCceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDG--TL--IE-------------HDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~--~l--~~-------------~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +..+.+.+|++++|.|.+.+.|  .+.|.|++...  .+  +.             ....++.+......   ...+|.|
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I   85 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSK---NTLYLQM   85 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTT---TEEEEEE
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCC---CEEEEEE
Confidence            3457899999999999999987  67899988531  11  10             01123333221111   1346999


Q ss_pred             eccCCCCCeEEEEEEEeCCcee--EEEEEEEeecC
Q psy12803        437 SNVNISDFDTYRCISKNEVDIA--KGSLILFESNA  469 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~~  469 (902)
                      .+++.+|+|.|+|.|.|..+..  ...+.|.|...
T Consensus        86 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           86 NSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             CcCCHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            9999999999999999984332  23456777654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.44  E-value=1.6e-07  Score=92.94  Aligned_cols=83  Identities=27%  Similarity=0.407  Sum_probs=59.5

Q ss_pred             CcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCC-CCceEEec---CCCcccccCC-ccceecc---CCcEEEE
Q psy12803        280 TSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHP-KPSIIWKT---SENKPITLGS-WKDSAVA---SSTLNFT  351 (902)
Q Consensus       280 ~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k---~~~~~~~~~~-~~~~~~~---~~sL~I~  351 (902)
                      .+.+.++|.+.     ..+....+.+|++++|.|.+.+.| .+.+.|+|   ++..++.... .+.....   ...|.|.
T Consensus        77 ~l~V~~~P~~~-----~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  151 (184)
T 3b5h_A           77 NIQLHGPPRVK-----AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE  151 (184)
T ss_dssp             EEEECCSCCCE-----ESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEEC
T ss_pred             EEEEecCCcee-----ecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEe
Confidence            34445555443     233556789999999999999999 89999999   5554443221 2222222   2389999


Q ss_pred             eee-eecCceeEEeecC
Q psy12803        352 RIN-RINMGAYMCLADN  367 (902)
Q Consensus       352 ~Vt-~~DsG~YtC~A~N  367 (902)
                      +++ .+|+|.|+|.|.|
T Consensus       152 ~v~~~~d~G~Y~C~a~N  168 (184)
T 3b5h_A          152 NLNMEADPGQYRCNGTS  168 (184)
T ss_dssp             SCCTTTSSEEEEEEEEE
T ss_pred             eccccccCceEEEEEEe
Confidence            999 8999999999998

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.44  E-value=5.1e-07  Score=94.84  Aligned_cols=96  Identities=17%  Similarity=0.100  Sum_probs=60.6

Q ss_pred             EEEEcCceeeeecCceEEEEEEeecc--CCceEEEEecCC--e--ee---e---------cCCceEEEeecCCCceeeEe
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAF--PLSVRYWEFIDG--T--LI---E---------HDGVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~--~--l~---~---------~~~~~~~~~~~~~~s~~~~s  432 (902)
                      .....+..+.+.+|++|+|.|.+.+.  +.+.+.|++...  .  ++   .         ....++.+.....   ....
T Consensus        10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~   86 (257)
T 3gkz_A           10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTS---KNQV   86 (257)
T ss_dssp             EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGG---GTEE
T ss_pred             EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecC---CceE
Confidence            33445566779999999999999984  478999998431  1  11   0         0111222221111   1134


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCC----ceeEEEEEEEeecC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEV----DIAKGSLILFESNA  469 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~----G~~~~s~~L~V~~~  469 (902)
                      +|.|.+++.+|+|.|+|.|.|..    ......+.|.|...
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            69999999999999999999972    22334456777654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.43  E-value=2.2e-07  Score=97.85  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eee-cC--C-----------ceEEEeecCCCceee
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIE-HD--G-----------VKYSISDVDKGSYQY  430 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~-~~--~-----------~~~~~~~~~~~s~~~  430 (902)
                      +|.+...+..+.+.+|++|+|.|.+.+.|.+.+.|++..  ..  ++. ..  .           .++......    ..
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~   77 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGST----RK   77 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC------C
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCC----CC
Confidence            456667778889999999999999999999999998832  11  110 00  0           011110000    11


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCc---eeEEEEEEEeecC
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVD---IAKGSLILFESNA  469 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G---~~~~s~~L~V~~~  469 (902)
                      ..+|.|.+++.+|+|.|.|.|.|..+   .......|.|...
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             CCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             eEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence            34599999999999999999999876   3344556666654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.43  E-value=1.6e-07  Score=95.68  Aligned_cols=94  Identities=18%  Similarity=0.246  Sum_probs=64.5

Q ss_pred             cCceeeeecCceEEEEEEeeccCC-----ceEEEEecCCeeeecCC-------------ceEEEeecCCCceeeEeEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPL-----SVRYWEFIDGTLIEHDG-------------VKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~-----P~v~W~k~~~~l~~~~~-------------~~~~~~~~~~~s~~~~stL~I  436 (902)
                      .+..+.+.+|+++.|.|.+.+.|.     +.+.|++++..+.....             .+..+....  ......+|.|
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L~I   84 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ--LSLGNAALQI   84 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHH--HTTTEEEEEE
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEcccc--ccCCEEEEEE
Confidence            455678899999999999988774     38999987633221111             111111100  0001246999


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .+++.+|+|.|+|.|.| .+.....+.|.|..++.
T Consensus        85 ~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~  118 (222)
T 3sbw_C           85 TDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYN  118 (222)
T ss_dssp             SSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC
T ss_pred             cCcccccCeEEEEEEEe-CCCceeEEEEEEECCCC
Confidence            99999999999999999 67778888898886544

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.42  E-value=3.2e-07  Score=94.67  Aligned_cols=143  Identities=18%  Similarity=0.269  Sum_probs=88.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--c--cccc--C------Cccceec-----cCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--K--PITL--G------SWKDSAV-----ASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~--~~~~--~------~~~~~~~-----~~~sL~I~~Vt~~DsG  359 (902)
                      .+..+.+.+|++|+|.|.+.+.....+.|+|...  .  .+..  .      ..+....     ...+|+|.+++.+|+|
T Consensus         9 ~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg   88 (210)
T 2eys_A            9 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSA   88 (210)
T ss_dssp             ECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCc
Confidence            3566889999999999999876667899998542  1  1111  1      1112211     1237999999999999


Q ss_pred             eeEEeecCC----C-------CEEEEcC----c--eeeee--cCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEE
Q psy12803        360 AYMCLADNV----P-------PQILIRN----R--RVGVP--IGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYS  419 (902)
Q Consensus       360 ~YtC~A~N~----~-------P~i~~~p----~--~~~v~--~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~  419 (902)
                      .|.|.+.+.    .       -.+.+..    .  .+.+.  ..+.++|.|.+.++.++ .+.+..        ....+ 
T Consensus        89 ~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v~~~~--------~~~~~-  159 (210)
T 2eys_A           89 SYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSK--------DSDVY-  159 (210)
T ss_dssp             EEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECCCSSSSCEEEEEESCCTTCCCCCCS--------STTEE-
T ss_pred             eEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCCCCCCceEEEEcccccCCcEecccc--------CcceE-
Confidence            999998651    0       1111110    1  11111  12367899999988544 332211        11111 


Q ss_pred             EeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        420 ISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       420 ~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .  ..      ...|.+..+...|.|.|+|.+.|.++
T Consensus       160 ~--t~------~~~l~~~~~~~~~~~~~~w~~~~~~~  188 (210)
T 2eys_A          160 I--TD------KCVLDMRSMDFKSNSAVAWSNKSDFA  188 (210)
T ss_dssp             E--CC------CEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred             c--cC------chhcchhcccccccchhhccCCCceE
Confidence            0  01      12488888999999999999988765

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=98.42  E-value=1.5e-06  Score=90.35  Aligned_cols=154  Identities=20%  Similarity=0.313  Sum_probs=96.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecC--CCccc-----c-cC---------Cccceecc-C----CcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTS--ENKPI-----T-LG---------SWKDSAVA-S----STLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~--~~~~~-----~-~~---------~~~~~~~~-~----~sL~I~  351 (902)
                      .++..-.++.|++|.|.|.+.|..  .-.+.|.|.  ++.+.     . ..         ..+..+.. +    -.|.+.
T Consensus         5 ~eSG~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~   84 (254)
T 4f9p_D            5 QQSGAEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLS   84 (254)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEc
Confidence            344556689999999999999854  234778763  11110     0 00         01111111 1    258899


Q ss_pred             eeeeecCceeEEeecC-----------------------------------CCCEEEEcCceeeeecCceEEEEEEeecc
Q psy12803        352 RINRINMGAYMCLADN-----------------------------------VPPQILIRNRRVGVPIGRTATLECEVEAF  396 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N-----------------------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~  396 (902)
                      +++.+|+..|.|....                                   ....++..|..+.+.+|++++|.|.+...
T Consensus        85 sL~~eDTAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~  164 (254)
T 4f9p_D           85 SLTSDDSAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQS  164 (254)
T ss_dssp             SCCGGGCEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSC
T ss_pred             cCCCCCCEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCc
Confidence            9999999999996543                                   11134445666788999999999998765


Q ss_pred             CCceEEEEec--CCe--eeecCC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        397 PLSVRYWEFI--DGT--LIEHDG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       397 P~P~v~W~k~--~~~--l~~~~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      -...+.|++.  +..  ++....        .++....  ++   ...+|+|.+++.+|.+.|.|...+.
T Consensus       165 ~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~--sg---t~ftLtIs~lq~eD~A~YYC~q~~~  229 (254)
T 4f9p_D          165 ISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSG--SG---TEFTLSINSVETEDFGIYFCQQSNS  229 (254)
T ss_dssp             CTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEEC--CT---TEEEEEEESCCTTCCEEEEEEECSS
T ss_pred             ccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeee--eC---CEEEEEECCCCHHHCEEEEEeecCC
Confidence            5556899854  221  111110        1222211  11   1346999999999999999976554

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.41  E-value=8.7e-07  Score=90.00  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeecc-CCceEEEEecC---Ce--eeecCC-----------ceEEEeecCCCceeeEe
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFID---GT--LIEHDG-----------VKYSISDVDKGSYQYIM  432 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~---~~--l~~~~~-----------~~~~~~~~~~~s~~~~s  432 (902)
                      +.+...+ .+.+.+|++++|.|.+.+. |.+.|.|++..   ..  +.....           .++.+...     ....
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~   75 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS-----GADR   75 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEE-----TTEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecC-----CceE
Confidence            3455556 7889999999999999999 99999999843   11  100000           12222111     1134


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCc-----eeEEEEEEEeecC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVD-----IAKGSLILFESNA  469 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G-----~~~~s~~L~V~~~  469 (902)
                      +|.|.+++.+|+|.|+|.|.|..|     .....+.|.|...
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  117 (218)
T 3s96_B           76 YLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQ  117 (218)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC
T ss_pred             EEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecC
Confidence            699999999999999999999876     3334566777643

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.41  E-value=7.3e-07  Score=90.35  Aligned_cols=92  Identities=18%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--ee--ee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL--IE--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l--~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +...+..+.+.+|+++.|.|.+.+.|.+.|.|++++.  .+  +.        ....++.+....     ...+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-----TDFTLSINSV   78 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC-----CEEEEEECCC
Confidence            4555778889999999999999999999999987542  11  00        001222222111     1246999999


Q ss_pred             CCCCCeEEEEEEEeCCceeE-EEEEEEeec
Q psy12803        440 NISDFDTYRCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      +.+|+|.|+|.|.|..+... ....|.|..
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           79 ETEDFGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             ChhhCEEEEEeeecCCcceeCCCEEEEEec
Confidence            99999999999999887543 234566654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.41  E-value=1.1e-06  Score=83.29  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=65.6

Q ss_pred             EEcCceeeeecCceEEEEEEeeccC-CceEEEEecC--C--e-eeecC--------CceEEEeecCCCceeeEeEEEEec
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFID--G--T-LIEHD--------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~--~--~-l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      +..+..+.+.+|++|+|.|.+.+.. ...+.|++..  .  . +....        ..++.+......   ...+|+|.+
T Consensus         5 ~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~---~~~sL~I~~   81 (129)
T 3rrq_A            5 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNG---RDFHMSVVR   81 (129)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTS---SEEEEEESS
T ss_pred             EECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCC---CEEEEEECC
Confidence            4456678899999999999998765 5679998742  1  1 11111        123333321111   245799999


Q ss_pred             cCCCCCeEEEEEEEeCCcee----EEEEEEEeecCCCC
Q psy12803        439 VNISDFDTYRCISKNEVDIA----KGSLILFESNAKTP  472 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~----~~s~~L~V~~~p~~  472 (902)
                      ++.+|+|.|.|.+.|..+..    ...+.|.|.+.+..
T Consensus        82 ~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~~~  119 (129)
T 3rrq_A           82 ARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERRAE  119 (129)
T ss_dssp             CCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCCC-
T ss_pred             CChhHCEEEEEEEEecCCCceeeEeceEEEEEecCccc
Confidence            99999999999999987755    45578888765544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.40  E-value=1.4e-07  Score=93.98  Aligned_cols=79  Identities=23%  Similarity=0.286  Sum_probs=60.4

Q ss_pred             cCceeeeecCceEEEEEE-eeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECE-VEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~-a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      .+..+.+.+|+++.|.|. +.+.|. +.+.|++++..+......+.... ....      +|.|.+++.+|+|.|+|.|.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~------~L~i~~v~~~d~G~Y~C~~~   86 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS-QTNG------NLYIANVEASDKGNYSCFVS   86 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEEC-TTTC------CEEESSCCGGGCEEEEEEEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEE-cCCC------eEEECcCCcccCeEEEEEEE
Confidence            346678999999999999 899998 99999998877653323222222 2222      39999999999999999999


Q ss_pred             eCCceeEE
Q psy12803        453 NEVDIAKG  460 (902)
Q Consensus       453 N~~G~~~~  460 (902)
                      |..+....
T Consensus        87 ~~~~~~~~   94 (201)
T 3s97_C           87 SPSITKSV   94 (201)
T ss_dssp             EGGGTEEE
T ss_pred             ecCCCcch
Confidence            98766543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.40  E-value=5.1e-07  Score=94.89  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             CceeeeecCceEEEEEEeeccC--CceEEEEecC--Cee--e-e------------cCCceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP--LSVRYWEFID--GTL--I-E------------HDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~~l--~-~------------~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +..+.+.+|++|+|.|.+.+.+  .+.+.|++..  ..+  + .            ....++.+.....   ....+|.|
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I   85 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKS---SSTAYLEL   85 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG---GTEEEEEE
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecC---CCEEEEEE
Confidence            4456699999999999999876  6799998743  111  1 0            0011222221111   11345999


Q ss_pred             eccCCCCCeEEEEEEEeC----CceeEEEEEEEeec
Q psy12803        437 SNVNISDFDTYRCISKNE----VDIAKGSLILFESN  468 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~----~G~~~~s~~L~V~~  468 (902)
                      .+++.+|+|.|+|.|.|.    .+.......|.|..
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           86 RSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             CSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             CCCCcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            999999999999999998    34444556677764

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=1.2e-06  Score=83.23  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             EEEEcCceeeeecCceEEEEEEeecc-CCceEEEEecCCe---eeecC-C---ceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGT---LIEHD-G---VKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~---l~~~~-~---~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      .+...+..+.+.+|++|+|.|.+.+. +.+.+.|++....   ++... .   .++..............+|+|.+++.+
T Consensus        10 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   89 (136)
T 2d9c_A           10 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA   89 (136)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT
T ss_pred             EEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH
Confidence            44555667889999999999999876 5678999987632   21111 0   011110000000011345999999999


Q ss_pred             CCeEEEEEEEeCCc--eeE----EEEEEEeecCCC
Q psy12803        443 DFDTYRCISKNEVD--IAK----GSLILFESNAKT  471 (902)
Q Consensus       443 DsG~YtC~A~N~~G--~~~----~s~~L~V~~~p~  471 (902)
                      |+|.|.|.+.|..+  ...    ....|.|...+.
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s  124 (136)
T 2d9c_A           90 DAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS  124 (136)
T ss_dssp             TCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCC
T ss_pred             HCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCC
Confidence            99999999998653  111    356777776543

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.39  E-value=2.2e-06  Score=92.49  Aligned_cols=158  Identities=15%  Similarity=0.092  Sum_probs=97.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCC-------CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATG-------HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G-------~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      .|++..+.+|++++|.|.+.+       .|.+.|.|+|++..+ ............++|+|.+++++| |.|+|.|.|..
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i-~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~g   87 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-PKEQYTIINRTASSVTFTDIASLN-IQLTCNILTFG   87 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEEC-CGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEETT
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEEC-ChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccCC
Confidence            456678999999999999985       488999999986544 222211111112479999999885 99999997731


Q ss_pred             CE-EEEcCc--eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCc--------eeeEeEEEEec
Q psy12803        370 PQ-ILIRNR--RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS--------YQYIMQLNISN  438 (902)
Q Consensus       370 P~-i~~~p~--~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s--------~~~~stL~I~~  438 (902)
                      -. ......  .+....+....|.|.........+.|......-   ....+.+.......        ......+.|.+
T Consensus        88 ~~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~---~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (303)
T 1i1r_A           88 QLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH---LETNFTLKSEWATHKFADCKAKRDTPTSCTVDY  164 (303)
T ss_dssp             TEEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCS---SCCEEEEEEEETTEECCCEECCSSCTTEEECSS
T ss_pred             CcceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCC---CCcCEEEEEEecCCCCccCCCcCCCceEEEECC
Confidence            11 111111  122234566789999887777889996443211   11123222110000        00113477777


Q ss_pred             c-CCCCCeEEEEEEEeCCceeE
Q psy12803        439 V-NISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       439 V-~~~DsG~YtC~A~N~~G~~~  459 (902)
                      + .....-.++|.|.|.+|...
T Consensus       165 L~~p~t~Y~f~V~A~N~~G~~~  186 (303)
T 1i1r_A          165 STVYFVNIEVWVEAENALGKVT  186 (303)
T ss_dssp             CCCTTSCEEEEEEEEETTEEEE
T ss_pred             cCcccccEEEEEEEEcCCCCcc
Confidence            7 66666677899999999764

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.39  E-value=9.1e-08  Score=96.10  Aligned_cols=94  Identities=16%  Similarity=0.061  Sum_probs=60.1

Q ss_pred             cCceeeeecCceEEEEEEeeccCCc---eEEEEecCCeeeec------CCceEEEee--------cCCCceeeEeEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLS---VRYWEFIDGTLIEH------DGVKYSISD--------VDKGSYQYIMQLNIS  437 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~~~l~~~------~~~~~~~~~--------~~~~s~~~~stL~I~  437 (902)
                      .+..+.+.+|++++|.|.+.+.|.+   .|.|++++..+...      .........        ..........+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4567889999999999999998865   48999887543211      111111100        000001112459999


Q ss_pred             ccCCCCCeEEEEEEEeCCceeE-EEEEEEeec
Q psy12803        438 NVNISDFDTYRCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      +++.+|+|.|+|.+.|..+... ....+.+..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~  116 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLV  116 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEee
Confidence            9999999999999998766554 444444443

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.39  E-value=1.2e-06  Score=80.56  Aligned_cols=82  Identities=13%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--ee--e-e-----cCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL--I-E-----HDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l--~-~-----~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      +...+..+.+.+|++|+|.|.+.+.+ +.+.|++...  .+  + .     ....++.+.....  .....+|.|.+++.
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~--~~~~~~L~I~~v~~   80 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSE--RARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSS--SSSEEEEEECSCCG
T ss_pred             eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccC--CCCEEEEEECCCCh
Confidence            44556778899999999999998765 6899998642  11  1 0     0112233222110  11245699999999


Q ss_pred             CCCeEEEEEEEeCCc
Q psy12803        442 SDFDTYRCISKNEVD  456 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G  456 (902)
                      +|+|.|.|.+.|..|
T Consensus        81 ~DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           81 EDSGTYFCAAEASSG   95 (113)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             hhCEEEEEEEecCCC
Confidence            999999999999765

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.39  E-value=4e-07  Score=82.29  Aligned_cols=87  Identities=22%  Similarity=0.216  Sum_probs=56.9

Q ss_pred             eeeeecCceEEEEEEeeccCCc---eEEEEecCCe-------eeecC--------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS---VRYWEFIDGT-------LIEHD--------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~~~-------l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      .+.+.+|++|+|.|.+.+.+.+   .+.|++....       +....        ..++.+....   .....+|.|.++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~---~~~~~sL~I~~v   79 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL---NKGDVSLIIKNV   79 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCG---GGTBCCEEECSC
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCc---cCCcEeEEEccC
Confidence            4578899999999999876533   4999986521       11111        1122221110   001235999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        440 NISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +.+|+|.|.|.+.|..+.....+.|.|.
T Consensus        80 ~~~D~G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           80 TLDDHGTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             CGGGCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred             CChhCeEEEEEEEcCCcccceEEEEEEE
Confidence            9999999999999987666556666654

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.38  E-value=6.3e-07  Score=82.30  Aligned_cols=90  Identities=20%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             CceeeeecCceEEEEEEeec-cCCceEEEEecCCe-------eeecC--------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        376 NRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGT-------LIEHD--------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~-------l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +..+.+.+|++|+|.|.+.. .....+.|++....       +....        ..++.+....   .....+|.|.++
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~I~~v   80 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHI---SEGDVSLTIENS   80 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCG---GGTBCCEEESSC
T ss_pred             cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCC---CCCeEEEEECCC
Confidence            45678999999999999875 34567999987521       11111        1222221100   011235999999


Q ss_pred             CCCCCeEEEEEEEeCCcee--EEEEEEEeec
Q psy12803        440 NISDFDTYRCISKNEVDIA--KGSLILFESN  468 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~--~~s~~L~V~~  468 (902)
                      +.+|+|.|.|.+.|..+..  ...+.|.|..
T Consensus        81 ~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           81 VESDSGLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             CGGGCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             CcccCEEEEEEEEcCCcccccEEEEEEEECC
Confidence            9999999999999876443  6667776654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.38  E-value=3.9e-07  Score=94.32  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccC----CceEEEEecC--Ce--eeec--------CCceEEEeecCCCceeeEeEE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFP----LSVRYWEFID--GT--LIEH--------DGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~--~~--l~~~--------~~~~~~~~~~~~~s~~~~stL  434 (902)
                      .+...+..+.+.+|++|+|.|.+.+.|    .+.|.|+++.  ..  +...        ...++.+....     ...+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L   77 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-----TDFTL   77 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEE
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecC-----CeEEE
Confidence            455667788899999999999999998    7899999863  11  1111        01223222111     12369


Q ss_pred             EEeccCCCCCeEEEEEEEeCCce-eEEEEEEEeecCC
Q psy12803        435 NISNVNISDFDTYRCISKNEVDI-AKGSLILFESNAK  470 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~-~~~s~~L~V~~~p  470 (902)
                      .|.+++.+|+|.|+|.|.|..+. ....+.|.|...+
T Consensus        78 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  114 (240)
T 1moe_A           78 IIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG  114 (240)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred             EEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence            99999999999999999998664 3345667776543

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.38  E-value=2.8e-06  Score=77.83  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=63.4

Q ss_pred             cCceeeeecCceEEEEEEeeccCC-ceEEEEecCC----e-eeecC-------CceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDG----T-LIEHD-------GVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~----~-l~~~~-------~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .+..+.+.+|++|+|.|.+..... ..+.|++...    . +....       ..++.+......   ...+|+|.+++.
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~---~~~sL~I~~~~~   83 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRD---FIFTVTMEDLRM   83 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTT---TEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcC---CEEEEEEccCCH
Confidence            456678999999999999986543 4699998653    1 11111       112222211111   134699999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      +|+|.|.|.+.+........+.|.|...|
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           84 SDAGIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             GGCEEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             HHCEEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            99999999999986666888888887543

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.38  E-value=1.8e-06  Score=79.30  Aligned_cols=80  Identities=20%  Similarity=0.288  Sum_probs=55.9

Q ss_pred             EEEEcCceeeeecCceEEEEEEeecc--CCceEEEEecCC-e---eeecCCceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAF--PLSVRYWEFIDG-T---LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~-~---l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .+...+..+.+.+|++|+|.|.+.+.  +.+.+.|++... .   .+.....++.+......   ...+|+|.+++.+|+
T Consensus         2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~Ds   78 (111)
T 2ywz_A            2 WVDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS---KSFSLRISDLRVEDS   78 (111)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTT---TEEEEEECSCCGGGC
T ss_pred             eeEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCC---CEEEEEECCCChhcC
Confidence            34556777889999999999999876  577999998631 1   11112223332211111   135699999999999


Q ss_pred             eEEEEEEEe
Q psy12803        445 DTYRCISKN  453 (902)
Q Consensus       445 G~YtC~A~N  453 (902)
                      |.|.|.+.|
T Consensus        79 G~Y~C~~~~   87 (111)
T 2ywz_A           79 GTYKCQADY   87 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999998

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.37  E-value=2.4e-06  Score=92.75  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=71.9

Q ss_pred             CcEEEEcCCeEEEEEecCCC-----CCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecCCCCE
Q psy12803        299 SPIVVREGDNVRLRCVATGH-----PKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADNVPPQ  371 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~-----P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N~~P~  371 (902)
                      .+..+.+|++|+|.|.+.+.     |.+.|.|++++..+ ............  +.|+|.+++.+|+|.|+|.+.+..-.
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l-~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ-PGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBC-TTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEEC-CccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            45678999999999999997     67899999987654 222111112222  57999999999999999999763222


Q ss_pred             EEEcCc-eeeeecCceEEEEEEeecc-CCceEEEEec
Q psy12803        372 ILIRNR-RVGVPIGRTATLECEVEAF-PLSVRYWEFI  406 (902)
Q Consensus       372 i~~~p~-~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~  406 (902)
                      +..... .+....+....|.|...+. ....+.|...
T Consensus        87 ~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~  123 (313)
T 2d9q_B           87 ILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPG  123 (313)
T ss_dssp             EEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECC
T ss_pred             eEEEEEEccCCCCCCCccceeeECCCCccEEEEecCC
Confidence            211110 1112345678889988865 4568889643

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.37  E-value=5.6e-07  Score=82.51  Aligned_cols=85  Identities=12%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCc-----eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLS-----VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-----~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      .+|.+...+.. .+.+|++|+|.|.+...+..     .+.|++++..+...         ..      ..+|.|.+|+.+
T Consensus         7 ~kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~~---------~~------~~~l~i~~v~~~   70 (108)
T 4hwn_A            7 PAPILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSR---------GL------SSEFQIPTASED   70 (108)
T ss_dssp             CCCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEEE---------ES------CCEEEESSCCGG
T ss_pred             CCCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccCC---------Cc------ccEEEeCccCcc
Confidence            35777776653 48899999999999876544     49999887655310         11      134999999999


Q ss_pred             CCeEEEEEEEeCCc---eeEEEEEEEeec
Q psy12803        443 DFDTYRCISKNEVD---IAKGSLILFESN  468 (902)
Q Consensus       443 DsG~YtC~A~N~~G---~~~~s~~L~V~~  468 (902)
                      |+|.|+|.|.|..+   ..+..+.|.|..
T Consensus        71 dsG~Y~C~~~~~~~~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           71 HSGSYWCEAATEDNQVWKQSPQLEIRVQG   99 (108)
T ss_dssp             GCEEEEEEEECTTSSSEEECCCEEECCBC
T ss_pred             cCeEEEEEEEeCCCceeccCCCEEEEEEe
Confidence            99999999999865   223445555543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.37  E-value=2.5e-07  Score=96.45  Aligned_cols=97  Identities=13%  Similarity=0.068  Sum_probs=66.5

Q ss_pred             cCceeeeecCceEEEEEEeeccCCce-----EEEEecCCeeee------cCCceEEEeecCCC-----ceeeEeEEEEec
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSV-----RYWEFIDGTLIE------HDGVKYSISDVDKG-----SYQYIMQLNISN  438 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~-----v~W~k~~~~l~~------~~~~~~~~~~~~~~-----s~~~~stL~I~~  438 (902)
                      .+..+.+.+|++++|.|.+.+.|.+.     |.|++++.....      ..............     ......+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45667899999999999999998776     999987532210      00000000000000     000123499999


Q ss_pred             cCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        439 VNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      ++.+|+|.|+|.|.|..+.....+.|.|..+|.
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~  121 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA  121 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCCc
Confidence            999999999999999999888899999987544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.37  E-value=1.8e-07  Score=92.76  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=52.6

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +....+.+|++++|.|.+.+.|.+.+.|++++..+         .....+|.|.+++.+|+|.|+|.|.|
T Consensus       104 ~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n  164 (184)
T 2ny1_B          104 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQ  164 (184)
T ss_dssp             SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE---------EEESSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc---------ccCceEEEEecCCcCCCeEEEEEEEE
Confidence            44467899999999999999999999999976553         23467899999999999999999977

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.37  E-value=2e-06  Score=79.68  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             cCceeeeecCceEEEEEEeecc----CCceEEEEecCCe------eeec-C-----------CceEEEeecCCCceeeEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF----PLSVRYWEFIDGT------LIEH-D-----------GVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~----P~P~v~W~k~~~~------l~~~-~-----------~~~~~~~~~~~~s~~~~s  432 (902)
                      .+..+.+.+|++|+|.|.+...    +.+.+.|++.+..      +... .           ..++.+.....   ....
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~   81 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPS---WKDG   81 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGG---GTBC
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCc---CCeE
Confidence            4556789999999999998643    4678999986531      1111 1           11222211000   0123


Q ss_pred             EEEEeccCCCCCeEEEEEEEeCCce--eEEEEEEEeecCCC
Q psy12803        433 QLNISNVNISDFDTYRCISKNEVDI--AKGSLILFESNAKT  471 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~~G~--~~~s~~L~V~~~p~  471 (902)
                      +|.|.+++.+|+|.|+|.+.|..+.  ....+.|.|...++
T Consensus        82 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP  122 (124)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC---
T ss_pred             EEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCC
Confidence            5999999999999999999998765  46788888876543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.36  E-value=1.1e-06  Score=88.62  Aligned_cols=88  Identities=19%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             cCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeec---CC-------------ceEEEeecCCCceeeEeEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEH---DG-------------VKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~---~~-------------~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      .+..+.+.+|++|+|.|.+.+ .+.+.|.|++++..+...   ..             .++.+.  .+.      +|.|.
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~------sL~I~   75 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT--QSY------SLQLS   75 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC--TTC------CEEEC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC--CCe------EEEEC
Confidence            456678999999999999975 456799999876443210   00             012221  222      39999


Q ss_pred             ccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        438 NVNISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      +++.+|+|.|+|.|.|..+.....+.|.|...+
T Consensus        76 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~  108 (193)
T 2if7_A           76 NLKMEDTGSYRAQISTKTSAKLSSYTLRILRQL  108 (193)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             CCCcccCceEEEEEEecCCCeEEEEEEEEEccC
Confidence            999999999999999999887778888887543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.36  E-value=3.9e-07  Score=93.77  Aligned_cols=89  Identities=12%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             CCCEEEEcCceee--eecCceEEEEEEeecc---CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 VPPQILIRNRRVG--VPIGRTATLECEVEAF---PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ~~P~i~~~p~~~~--v~~G~~v~L~C~a~g~---P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .+|.+...+....  +.+|++++|.|.+.+.   |. +.|.|++++..+..  ...........+.+...++|.|.+++.
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~   85 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHT--AQTQTHREDYNSTIRVVSTLPIQHQDW   85 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECC--CEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccC--cccccccccCCCeEEEEEEEEEcHHHc
Confidence            4566665554444  7899999999999987   43 79999998865532  111111122233444567899999999


Q ss_pred             CCCeEEEEEEEeCCcee
Q psy12803        442 SDFDTYRCISKNEVDIA  458 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~  458 (902)
                      +|+|.|+|.|.|..+..
T Consensus        86 ~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           86 MSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HTTCCEEEEEEETTCSS
T ss_pred             CCCCeEEEEEECCcCCC
Confidence            99999999999997754

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.35  E-value=2.5e-07  Score=94.54  Aligned_cols=63  Identities=19%  Similarity=0.343  Sum_probs=50.3

Q ss_pred             EEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEee-eeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI-NRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~V-t~~DsG~YtC~A~N  367 (902)
                      ..+|++++|.|.  +.|.|.++|+|++..+............+++|+|.+| +.+|+|.|+|.|.|
T Consensus       125 ~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N  188 (204)
T 1sy6_A          125 SISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG  188 (204)
T ss_dssp             EEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             eecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEecc
Confidence            349999999999  7899999999987655332222233335789999999 99999999999999

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.35  E-value=5.6e-07  Score=93.87  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----e-eeec-------CCceEEEeecCCCceeeEeEEEEe
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----T-LIEH-------DGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~-l~~~-------~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..+...+..+.+.+|++|+|.|.+.+.|.+.+.|++...    . +...       ...++......     ...+|.|.
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~   79 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG-----TDYSLTIS   79 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEES
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC-----CEEEEEEc
Confidence            345556777889999999999999999999999998642    1 1110       01122221111     12369999


Q ss_pred             ccCCCCCeEEEEEEEeCCcee-EEEEEEEeec
Q psy12803        438 NVNISDFDTYRCISKNEVDIA-KGSLILFESN  468 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V~~  468 (902)
                      +++.+|+|.|+|.|.|..+.. .....|.|..
T Consensus        80 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           80 NLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             cCChhhCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            999999999999999986643 2334566654

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.35  E-value=5.5e-07  Score=82.81  Aligned_cols=71  Identities=27%  Similarity=0.380  Sum_probs=50.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccc--------ccCCccceecc------CCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPI--------TLGSWKDSAVA------SSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~--------~~~~~~~~~~~------~~sL~I~~Vt~~DsG~  360 (902)
                      .+..+.+.+|++|+|.|.+.+.+ +.+.|+|...  .+.        .....+.....      ..+|+|.+++.+|+|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~   85 (113)
T 1h5b_A            7 SPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEE
Confidence            45668899999999999998855 6899998642  111        00111222222      2289999999999999


Q ss_pred             eEEeecCC
Q psy12803        361 YMCLADNV  368 (902)
Q Consensus       361 YtC~A~N~  368 (902)
                      |.|.+.|.
T Consensus        86 Y~C~~~n~   93 (113)
T 1h5b_A           86 YFCAAEAS   93 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            99999883

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.34  E-value=1.3e-06  Score=88.55  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=63.8

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC---e-eeec--------CCceEEEeecCCCceeeEeEEEEe
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG---T-LIEH--------DGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~---~-l~~~--------~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      +.+...+..+.+.+|++++|.|.+.+.|.+.+.|++...   . ....        ...++.+....     ...+|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~   76 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSG-----RDSSFTIS   76 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEES
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccC-----CEEEEEEC
Confidence            456666778899999999999999999999999988431   1 1110        11222222111     13469999


Q ss_pred             ccCCCCCeEEEEEEEeCCcee-EEEEEEEe
Q psy12803        438 NVNISDFDTYRCISKNEVDIA-KGSLILFE  466 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V  466 (902)
                      +++.+|+|.|+|.|.|..+.. .....|.|
T Consensus        77 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           77 SLESEDIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             SCCGGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCCcccCEEEEEecccCCceEEcCCceEEE
Confidence            999999999999999986533 34455666

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.34  E-value=6.6e-07  Score=92.49  Aligned_cols=93  Identities=18%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ceee--e-----------cCCceEEEeecCCCceeeEeEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTLI--E-----------HDGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l~--~-----------~~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +...+..+.+.+|++|+|.|. .+.|.+.|.|+++.  ..+.  .           ....++.+.....    ...+|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I   77 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQ----ENFSLIL   77 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSS----SBCEEEE
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCC----ceEEEEE
Confidence            455677888999999999999 78899999999862  1110  0           0011222221111    1235999


Q ss_pred             eccCCCCCeEEEEEEEeCCcee-----EEEEEEEeecC
Q psy12803        437 SNVNISDFDTYRCISKNEVDIA-----KGSLILFESNA  469 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~-----~~s~~L~V~~~  469 (902)
                      .+++.+|+|.|+|.|.|..|..     .....|.|...
T Consensus        78 ~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~  115 (238)
T 2p1y_A           78 ELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGS  115 (238)
T ss_dssp             SSCCGGGCEEEEEEEEC------CEEECCCEEEEEECC
T ss_pred             ecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEecc
Confidence            9999999999999999986531     13346666544

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.34  E-value=3.4e-06  Score=85.34  Aligned_cols=94  Identities=15%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             EcCceeeeecCceEEEEEEeecc-------CCceEEEEecCCe-----eee----------cCCceEEEeecCCCceeeE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAF-------PLSVRYWEFIDGT-----LIE----------HDGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~-------P~P~v~W~k~~~~-----l~~----------~~~~~~~~~~~~~~s~~~~  431 (902)
                      ..+..+.+.+|++|+|.|.+.+.       +.+.+.|++++..     +..          ....++.+.....   ...
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~   81 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQ---KKN   81 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGG---GTB
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCC---CCe
Confidence            35667889999999999999864       5789999987642     111          0112333221100   012


Q ss_pred             eEEEEeccCCCCCeEEEEEEEeCCceeE----EEEEEEeecCC
Q psy12803        432 MQLNISNVNISDFDTYRCISKNEVDIAK----GSLILFESNAK  470 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N~~G~~~----~s~~L~V~~~p  470 (902)
                      .+|.|.+++.+|+|.|+|.+.|..+...    ..+.|.|...+
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~  124 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI  124 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC
Confidence            2499999999999999999999874322    46777777654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.34  E-value=1e-06  Score=92.57  Aligned_cols=95  Identities=15%  Similarity=0.204  Sum_probs=60.6

Q ss_pred             CEEEEcCceeeeecCceEEEEEEee---ccCCceEEEEecCCeeeec-------C---------CceEEEeecCCCceee
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVE---AFPLSVRYWEFIDGTLIEH-------D---------GVKYSISDVDKGSYQY  430 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~---g~P~P~v~W~k~~~~l~~~-------~---------~~~~~~~~~~~~s~~~  430 (902)
                      +.+...+..+.+.+|++++|.|.+.   +.|.+.|.|++.+......       .         ..++.+.....   ..
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~   82 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTF---HN   82 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTT---TT
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCC---CC
Confidence            4455667778899999999999998   7788899999866422110       0         01111110000   01


Q ss_pred             EeEEEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEee
Q psy12803        431 IMQLNISNVNISDFDTYRCISKNEVDIA--KGSLILFES  467 (902)
Q Consensus       431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V~  467 (902)
                      ..+|.|.+++.+|+|.|+|.|.|..+..  ...+.|.|.
T Consensus        83 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           83 DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            1459999999999999999999976554  455566654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.33  E-value=6.7e-07  Score=81.47  Aligned_cols=75  Identities=19%  Similarity=0.333  Sum_probs=55.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+.. .+.+|++|+|.|.+.+.+ ..+.|++++..+...   +  ..  ..   ....+|.|.+|+.+|+|.|+
T Consensus         5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~~~~---~--~~--~~---~~~~~l~I~~v~~~dsG~Y~   72 (105)
T 2vsd_A            5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLRFDK---E--KD--KE---QDAAEFSFAVTNLEDAGTYQ   72 (105)
T ss_dssp             CCEEEEESCS-SCCTTCEEEEEEECCSSC-EEEEEEETTEEEEEE---E--EC--TT---CSEEEEEEECCSGGGCEEEE
T ss_pred             CCEEEeCCCC-CcCcCCCEEEEEEcCCCC-cEEEEEECCccceee---e--cc--CC---CCEEEEEECCCCHHHCeEEE
Confidence            5777776665 689999999999998764 678898876544210   1  11  11   12356999999999999999


Q ss_pred             EEEEeCC
Q psy12803        449 CISKNEV  455 (902)
Q Consensus       449 C~A~N~~  455 (902)
                      |.+.|..
T Consensus        73 C~~~n~~   79 (105)
T 2vsd_A           73 CRYQVSE   79 (105)
T ss_dssp             EEEEEET
T ss_pred             EEEEcCC
Confidence            9999964

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.33  E-value=6e-07  Score=95.56  Aligned_cols=105  Identities=13%  Similarity=0.056  Sum_probs=48.3

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee--ccCCcEEEEeeeeecCceeEEeecC-----------
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--VASSTLNFTRINRINMGAYMCLADN-----------  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~~~sL~I~~Vt~~DsG~YtC~A~N-----------  367 (902)
                      ..|.+|++|+|.|.+.+.+ +.+.|+|++..+..........  ..+..|.|.+|+  |+|.|+|.|.|           
T Consensus       116 ~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S  192 (257)
T 1b6u_A          116 PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSS  192 (257)
T ss_dssp             TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCC
T ss_pred             CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCC
Confidence            3578999999999998854 6899999887654322111111  125689999998  99999999986           


Q ss_pred             --------CCCEEEEc-CceeeeecCceEEEEEEeeccCCceEEEEecCCe
Q psy12803        368 --------VPPQILIR-NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT  409 (902)
Q Consensus       368 --------~~P~i~~~-p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~  409 (902)
                              .+|.+... +.......|..+.|.|.+ |.+.+.|.|...+-.
T Consensus       193 ~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~  242 (257)
T 1b6u_A          193 DPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLDLV  242 (257)
T ss_dssp             CCEEECCBCCC----------------------------------------
T ss_pred             CCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhhhc
Confidence                    11111100 111234457778888744 667788889766543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.33  E-value=2.4e-07  Score=91.41  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=61.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.+...+..+.+.+|++++|.|.+.+.|.+ .+.|++++..+..           ..      .+|.|.+++.+|+|.|
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----------~~------~~L~i~~v~~~d~G~Y   66 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-----------TN------SSLNIVNAKFEDSGEY   66 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-----------CS------SEEEECSCCGGGCEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-----------Cc------eEEEEeccceecCEEE
Confidence            5777778888889999999999999999876 6999987755421           11      2499999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..++..  +.|.|.
T Consensus        67 ~C~~~~~~~s~~--~~l~V~   84 (176)
T 1f2q_A           67 KCQHQQVNESEP--VYLEVF   84 (176)
T ss_dssp             EEECTTSSCCCC--EEEEEE
T ss_pred             EEEcCCcccccc--EEEEEe
Confidence            999999776554  444544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.33  E-value=6.6e-07  Score=94.30  Aligned_cols=93  Identities=17%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             cCceeeeecCceEEEEEEeeccC--CceEEEEecC--Ce--eee-c-----------CCceEEEeecCCCceeeEeEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFP--LSVRYWEFID--GT--LIE-H-----------DGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~~--l~~-~-----------~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      .+..+.+.+|++|+|.|.+.+.|  .+.|.|++++  ..  .+. .           ...++.+......   ...+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~L~I   82 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSK---NQVFLKM   82 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTT---TEEEEEE
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCC---CEEEEEE
Confidence            34456799999999999999885  6899999863  11  110 0           0122332221101   1346999


Q ss_pred             eccCCCCCeEEEEEEEeCCc-------ee--EEEEEEEeecCC
Q psy12803        437 SNVNISDFDTYRCISKNEVD-------IA--KGSLILFESNAK  470 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G-------~~--~~s~~L~V~~~p  470 (902)
                      .+++.+|+|.|+|.|.|..|       ..  ...+.|.|...+
T Consensus        83 ~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~  125 (257)
T 1f3r_B           83 NSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG  125 (257)
T ss_dssp             ESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSC
T ss_pred             CCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCC
Confidence            99999999999999999864       11  234567776543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.33  E-value=1.6e-06  Score=79.23  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----e-eeecC-------CceEEEeecCCCceeeEeEEEEe
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----T-LIEHD-------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~-l~~~~-------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++...    . +....       ..++.+....     ...+|.|.
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-----~~~~L~I~   78 (109)
T 2q20_A            4 IQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSG-----TDFTFTIS   78 (109)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEES
T ss_pred             ccEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccC-----CEEEEEEC
Confidence            345556777889999999999999988888999998752    1 11110       1223222111     13469999


Q ss_pred             ccCCCCCeEEEEEEEeC
Q psy12803        438 NVNISDFDTYRCISKNE  454 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~  454 (902)
                      +++.+|+|.|.|.+.|.
T Consensus        79 ~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           79 SLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             SCCGGGCEEEEEEECSS
T ss_pred             CCChhhCEEEEEEEeeC
Confidence            99999999999999875

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.32  E-value=1.5e-06  Score=88.15  Aligned_cols=91  Identities=16%  Similarity=0.117  Sum_probs=62.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--ee--ee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL--IE--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l--~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +.. +..+.+.+|++++|.|.+.+.|.+.|.|+++..  .+  +.        ....++.+....     ...+|.|.++
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   77 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-----TDFTLTIDPV   77 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecC-----CEEEEEECCC
Confidence            344 778889999999999999999989999988532  11  11        001222222111     1246999999


Q ss_pred             CCCCCeEEEEEEEeCCceeE-EEEEEEeec
Q psy12803        440 NISDFDTYRCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      +.+|+|.|+|.|.|..+... ....|.|..
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           78 EADDTAIYFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CHHHCeEEEEEEEcCCCceeCCCEEEEEcC
Confidence            99999999999999877543 234566654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.32  E-value=1.9e-07  Score=95.48  Aligned_cols=84  Identities=13%  Similarity=0.057  Sum_probs=56.3

Q ss_pred             cCceeeeecC--ceEEEEEEeeccCCceEEEEec--CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        375 RNRRVGVPIG--RTATLECEVEAFPLSVRYWEFI--DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       375 ~p~~~~v~~G--~~v~L~C~a~g~P~P~v~W~k~--~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      .+..+.+.+|  ++++|.|.+.+ |.+.+.|++.  ++.++... .++...  ...      .|.|.+++.+|+|.|+|.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~-~~~~~~--~~~------~l~I~~v~~~D~G~Y~C~   82 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG-NRISWD--SKK------GFTIPSYMISYAGMVFCE   82 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS-SSCEEE--TTT------EEEEEGGGTTTCSEEEEE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC-Cccccc--CCc------cEEEccCChhcCceEEEE
Confidence            3467889999  99999999986 7799999885  44443322 222221  112      399999999999999999


Q ss_pred             EEeCCceeEE-EEEEEeec
Q psy12803        451 SKNEVDIAKG-SLILFESN  468 (902)
Q Consensus       451 A~N~~G~~~~-s~~L~V~~  468 (902)
                      |.|..+.... .+.|.|..
T Consensus        83 a~n~~~~~~s~~~~l~v~~  101 (213)
T 2x1w_L           83 AKINDESYQSIMYIVVVVG  101 (213)
T ss_dssp             EC----CEECCCEEEEECB
T ss_pred             EEECCeeEEEEEEEEEEeC
Confidence            9996544332 26666643

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.32  E-value=1e-06  Score=92.76  Aligned_cols=96  Identities=16%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e--eee-c--------CCceEEEeecCCCceeeEeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T--LIE-H--------DGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~--l~~-~--------~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      ..+...+..+.+.+|++|+|.|.+.+.|.+.+.|++...  .  .+. .        ...++.+......   ...+|.|
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~sL~I   80 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSD---SSFHLRK   80 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTT---TEEEEEE
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCC---CEEEEEE
Confidence            456667778899999999999999999999999988431  1  110 0        0111222111111   1346999


Q ss_pred             eccCCCCCeEEEEEEEeCCce----eEEEEEEEeec
Q psy12803        437 SNVNISDFDTYRCISKNEVDI----AKGSLILFESN  468 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~----~~~s~~L~V~~  468 (902)
                      .+++.+|+|.|+|.|.|..+.    ....+.|.|..
T Consensus        81 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           81 ASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             SSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CCCCcccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            999999999999999998652    22345666664

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.31  E-value=6.3e-07  Score=85.52  Aligned_cols=72  Identities=14%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc--cccCCccceeccC---CcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP--ITLGSWKDSAVAS---STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~--~~~~~~~~~~~~~---~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+..+.+.+|++|+|.|.+.+.  +.+.|+|+.  ..+  +.....+.....+   .+|+|.+++.+|+|.|.|.+.|
T Consensus        21 ~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n   98 (133)
T 3khq_A           21 WQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKC   98 (133)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESS
T ss_pred             EEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEe
Confidence            345667889999999999999987  899999973  211  1111222222222   2699999999999999999988


Q ss_pred             C
Q psy12803        368 V  368 (902)
Q Consensus       368 ~  368 (902)
                      .
T Consensus        99 ~   99 (133)
T 3khq_A           99 D   99 (133)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.31  E-value=1.9e-06  Score=86.82  Aligned_cols=92  Identities=16%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             CceeeeecCceEEEEEEeeccCCc---eEEEEecCCeeeecC--Cc------------eEEEee--cCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS---VRYWEFIDGTLIEHD--GV------------KYSISD--VDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~~~l~~~~--~~------------~~~~~~--~~~~s~~~~stL~I  436 (902)
                      +..+.+.+|++|+|.|.+.+.|.+   .|.|++++..+....  ..            +.....  ..........+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            445778999999999999988766   478999876553210  00            011000  00000111345999


Q ss_pred             eccCCCCCeEEEEEEEeCCceeEEE-EEEEee
Q psy12803        437 SNVNISDFDTYRCISKNEVDIAKGS-LILFES  467 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~~G~~~~s-~~L~V~  467 (902)
                      .+++.+|+|.|+|.|.|..+..... ..+.+.
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~  119 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI  119 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeee
Confidence            9999999999999999987766443 344443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	902
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	9e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-07
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	4e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	4e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	9e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.003
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	5e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	9e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	9e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.002
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	8e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	6e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-05
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	2e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.001
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.002
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.003
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	6e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.004

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 9e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPIT---LGSWKDS 341
           +PPT+   +   S        G +V L C A G P+P++ W                   
Sbjct: 2   VPPTVQARQ---SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 58

Query: 342 AVASSTLNFTRINRINMGAYMCLADN 367
           +  SS L    +++ +   Y+C+A+N
Sbjct: 59  SDDSSELTIRNVDKNDEAEYVCIAEN 84

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 367 NVPPQILIRNRRVG--VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
           NVPP +  R   V     +G++ TL C+ + FP     W      +   +         D
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
             S     +L I NV+ +D   Y CI++N+      S+ L
Sbjct: 61  DSS-----ELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P+I         +      G  V L C A G+P P I W+  +              + 
Sbjct: 4   APSIKAK----FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ-----TSKWLSSE 54

Query: 346 STLNFTRINRINMGAYMCLADN 367
             L+   ++  + G Y C A+N
Sbjct: 55  PLLHIQNVDFEDEGTYECEAEN 76

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 14/98 (14%)

Query: 368 VPPQILIRN-RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
             P I  +         G+  TLEC     P+    W  +DG+          +      
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL------ 56

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                  L+I NV+  D  TY C ++N          +
Sbjct: 57  -------LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRIN 357
              IVV++G +V + C  TG P P+++W  +            + V  S L    +   +
Sbjct: 10  EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS----GGRATVTDSGLVIKGVKNGD 65

Query: 358 MGAYMCLADN 367
            G Y C A N
Sbjct: 66  KGYYGCRATN 75

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 369 PPQILIR-NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
            P+   +  + + V  G+  T+ C+V   P     W           G + +++D     
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK---PLSGGRATVTD----- 53

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                 L I  V   D   Y C + NE        ++
Sbjct: 54  ----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 7e-09
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS---STLNFTRINRIN 357
             V   + V+ RC A G+P P++ W     K                  +L    +   +
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 73

Query: 358 MGAYMCLADN 367
            G Y C+ +N
Sbjct: 74  KGNYTCVVEN 83

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 6/91 (6%)

Query: 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433
           +  R   VP   T    C     P+    W        +   +          S      
Sbjct: 10  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWS------ 63

Query: 434 LNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           L + +V  SD   Y C+ +NE      +  L
Sbjct: 64  LIMESVVPSDKGNYTCVVENEYGSINHTYHL 94

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
           PP++        +  G TA L C+ E+ P    +  +      +   +  S S     S 
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 429 QYIMQLNISNVNISDFD-TYRCISKNEVDIAKGSLIL 464
           Q   +L+I N+N+      YRC   +     +  + L
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 14/91 (15%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-------- 337
           PP +         S   + EG+   L C +   P  +                       
Sbjct: 2   PPRVKAV-----KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 56

Query: 338 WKDSAVASSTLNFTRINRINM-GAYMCLADN 367
           +  S+   S L+   +N     G Y C   +
Sbjct: 57  FVSSSQGRSELHIENLNMEADPGQYRCNGTS 87

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS---AVASSTLNFTR 352
           + S  ++ + GD   + C+   +P     +  +          + +     +   L F  
Sbjct: 8   YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 67

Query: 353 INRINMGAYMCLADN 367
               + G Y C  DN
Sbjct: 68  TLPEDEGVYTCEVDN 82

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 7/88 (7%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
             PQ + ++  +    G    + C   + P+    +      +  +   + +  +   G 
Sbjct: 4   PVPQYVSKD--MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEV 455
                +L        D   Y C   N V
Sbjct: 62  -----RLLFKTTLPEDEGVYTCEVDNGV 84

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 1/95 (1%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           VPP     N      IG  A L C   +  P S   W      +  +     + S+    
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461
                 +L    ++ SD   Y C ++N       S
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 95

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 14/92 (15%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV- 343
           +PP+         + P     G+   L C       PS      +   +        A  
Sbjct: 1   VPPSKP-----TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS 55

Query: 344 --------ASSTLNFTRINRINMGAYMCLADN 367
                    +  L F  ++  + G Y C A N
Sbjct: 56  NSSYVLNPTTGELVFDPLSASDTGEYSCEARN 87

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 15/69 (21%), Positives = 28/69 (40%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           +P   +EG++  + C       P+IIWK      I     +   ++++ L    I + + 
Sbjct: 9   TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 68

Query: 359 GAYMCLADN 367
           G Y C    
Sbjct: 69  GTYRCEGRI 77

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 8/75 (10%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
              G  A + C+V +       W+     +I    V++               L I  + 
Sbjct: 13  FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF--------IVLSNNYLQIRGIK 64

Query: 441 ISDFDTYRCISKNEV 455
            +D  TYRC  +   
Sbjct: 65  KTDEGTYRCEGRILA 79

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 2/96 (2%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG- 426
           VPP     +    V IG  A L C          Y  F DG  +     K + + ++   
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 427 -SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461
                   L    V   D   Y C ++N    A  S
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 17/94 (18%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAV 343
           +PP+         S P  V  G+   L C    G P     W   +   +     K +  
Sbjct: 1   VPPSKP-----TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRA 54

Query: 344 AS----------STLNFTRINRINMGAYMCLADN 367
                         L F  +   + G Y C A N
Sbjct: 55  FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
           +      G ++R  CVA+G P+P++ W           S     V+   L F+++   + 
Sbjct: 9   TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA---SQNRIEVSGGELRFSKLVLEDS 65

Query: 359 GAYMCLADN 367
           G Y C+A+N
Sbjct: 66  GMYQCVAEN 74

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 11/95 (11%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           P  L         IG      C     P     W      L   + ++            
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----------- 50

Query: 430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
              +L  S + + D   Y+C+++N+      S  L
Sbjct: 51  SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRIN 357
             + V EG++ R  C   G P P++ W        T    + +     ST   + +   +
Sbjct: 7   RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 66

Query: 358 MGAYMCLADN 367
            G Y  + +N
Sbjct: 67  EGNYSVVVEN 76

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQY 430
           +IL + R + V  G +A   C+ +  P+    W      L      + + +       +Y
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-------KY 53

Query: 431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                IS+V  SD   Y  + +N     +    L
Sbjct: 54  KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 87

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
             + V +G  V+L C   G  +P I W         L            + F  +  +  
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 359 ---GAYMCLADNVPPQILIRNRRVGVPIGRTATLECE 392
              G Y C  ++               I +   L  E
Sbjct: 64  SDAGRYWCQVED----------GGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
           V  G+   L C VE        W      +   D +   +S+     +      ++ +V 
Sbjct: 8   VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL-----SLKSVE 62

Query: 441 ISDFDTYRCISKNEV 455
            SD   Y C  ++  
Sbjct: 63  RSDAGRYWCQVEDGG 77

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 7/87 (8%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P +  +   V         LEC +E     V+Y    DG          ++        
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-------R 54

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEV 455
           +    L       SD   Y+C ++   
Sbjct: 55  KDEGSLVFLRPQASDEGHYQCFAETPA 81

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASSTLNFTRINRIN 357
           + ++ RE +   L C+  G+ +        + K         +      +L F R    +
Sbjct: 10  AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASD 69

Query: 358 MGAYMCLADNVPPQILIRNRRVGVPIGRTATL 389
            G Y C A+             GV   R  + 
Sbjct: 70  EGHYQCFAET----------PAGVASSRVISF 91

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           PQI+       V  G +  L  +V         W      + E + +K           +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-------SE 53

Query: 430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
              +L I          Y  + +N++   +  + L
Sbjct: 54  NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRIN 357
               VR G++V L    TG    +  W     +         +++   S L      + +
Sbjct: 8   EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEH 67

Query: 358 MGAYMCLADN 367
            G Y  L +N
Sbjct: 68  CGCYTLLVEN 77

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 12/104 (11%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
            P     E    +        + V L C A  +P  +  WK +  +       +   VA 
Sbjct: 4   GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 346 STLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL 389
             +    +   + G+Y C+A N            G  + R A+L
Sbjct: 62  DLVISNPVKAKDAGSYQCVATN----------ARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 369 PPQILIRNRRVGVPIG---RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK 425
            P    +      P G      TL C   A P +   W+     L      +Y +     
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---- 59

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNEV 455
                   +  + V   D  +Y+C++ N  
Sbjct: 60  ----AGDLVISNPVKAKDAGSYQCVATNAR 85

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRIN 357
               V EG +    C       P + W   + +      +          L   R+   +
Sbjct: 9   YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 68

Query: 358 MGAYMCLADN 367
            G Y   A N
Sbjct: 69  KGEYTVRAKN 78

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
           P+ +++     V  G++A   C V A    V  W   D  L +                 
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-------NG 54

Query: 430 YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
               L I+ V   D   Y   +KN     +  + L
Sbjct: 55  NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 5e-07
 Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 6/96 (6%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
            P+I  R +   V  G  A     V   P     W      +   D + +   + +    
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                    +V   D  +    + N          L
Sbjct: 64  VI------RDVTGEDSASIMVKAINIAGETSSHAFL 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 2/71 (2%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN--RI 356
               V +G +   R    G P P   W  +  K              +       +    
Sbjct: 12  QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE 71

Query: 357 NMGAYMCLADN 367
           +  + M  A N
Sbjct: 72  DSASIMVKAIN 82

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 7/82 (8%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           P  +   E         VR G +V   C A        +  T  +         D    +
Sbjct: 1   PIMVTVEE----QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF---N 53

Query: 346 STLNFTRINRINMGAYMCLADN 367
             L    +   + G Y+C   N
Sbjct: 54  GILTIRNVQPSDAGTYVCTGSN 75

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 369 PPQILIRNRR-VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           P  + +  +R   V  G   T  C  ++   +                            
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG------ 54

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                 L I NV  SD  TY C   N   + +G+  L
Sbjct: 55  -----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 86

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
           + P+IL  +R++ +  G T  LE +    P     W   D        +           
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK------ 54

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
                 +   +   +D   Y+   KNE+   +    +
Sbjct: 55  -SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV- 343
           + P I+ +     S  I ++ G    L     G P P+  W   ++           A  
Sbjct: 1   LKPKILTA-----SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS 55

Query: 344 ASSTLNFTRINRINMGAYMCLADN 367
           +++++ F    R + G Y     N
Sbjct: 56  STTSIFFPSAKRADSGNYKLKVKN 79

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 367 NVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
           +V P        + V  G  A  +C+VE +P     W   D  + E    +    +    
Sbjct: 6   HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
           S         S V   D   Y C + N +  A  +  L
Sbjct: 66  SLTI------SEVCGDDDAKYTCKAVNSLGEATCTAEL 97

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
           + P    +        + V EG   R  C   G+P P ++W   +N       ++     
Sbjct: 7   VKPYFTKT-----ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 61

Query: 345 S--STLNFTRINRINMGAYMCLADN 367
               +L  + +   +   Y C A N
Sbjct: 62  EGNCSLTISEVCGDDDAKYTCKAVN 86

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 9e-06
 Identities = 14/83 (16%), Positives = 19/83 (22%), Gaps = 14/83 (16%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWK---TSENKPITLGSWKDSAVAS---------- 345
           +      G +V   C      +P I W                    V            
Sbjct: 13  ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKE 72

Query: 346 -STLNFTRINRINMGAYMCLADN 367
              L    +   + G Y CLA N
Sbjct: 73  IEVLYIRNVTFEDAGEYTCLAGN 95

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 381 VPIGRTATLECEVEAFP---LSVRYWEFIDGTLIEHDGVKYSISDVDKGSY---QYIMQL 434
             +G      C+V +     +        +G+    DG+ Y       G     + I  L
Sbjct: 17  TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 76

Query: 435 NISNVNISDFDTYRCISKNEVDIAKGSLIL 464
            I NV   D   Y C++ N + I+  S  L
Sbjct: 77  YIRNVTFEDAGEYTCLAGNSIGISFHSAWL 106

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 23/179 (12%), Positives = 38/179 (21%), Gaps = 56/179 (31%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
           PP I           IVV  G+ +RL    +G P P++IW+ +                 
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKA----------------- 46

Query: 346 STLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEF 405
                                                  +                    
Sbjct: 47  ----------------------------------ITQGNKAPARPAPDAPEDTGDSDEWV 72

Query: 406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
            D  L+     +  +      S        +      D   Y    KN V   + +L +
Sbjct: 73  FDKKLLCETEGRVRVETTKDRS-----IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 14/95 (14%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS----TLNFTRIN 354
             + V  G     +C A G                     +    +S     + N     
Sbjct: 9   QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 68

Query: 355 RINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL 389
           + + G Y C+               GV I   A L
Sbjct: 69  KRDAGKYRCMIRT----------EGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433
           +R + V V  G+ AT +C      ++                           S ++I  
Sbjct: 6   LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG----IDVRDAPLKEIKVTSSRRFIAS 61

Query: 434 LNISNVNISDFDTYRCISKNEV 455
            N+ N    D   YRC+ + E 
Sbjct: 62  FNVVNTTKRDAGKYRCMIRTEG 83

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 1/72 (1%)

Query: 297 SSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR 355
           +  P     G  + LRC   G  P+  +       +            A  T        
Sbjct: 10  APLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD 69

Query: 356 INMGAYMCLADN 367
            +   + C  + 
Sbjct: 70  HHGAQFSCRTEL 81

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 7/97 (7%)

Query: 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS 427
            P ++ +       P+G+  TL C+VE      +         +     +  +       
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLT-------VVLLRGEKELKREPAVG 55

Query: 428 YQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
               +   +          + C ++ ++      L  
Sbjct: 56  EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 12/89 (13%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATG---HPKPSIIWKTSENKPITLGS----W 338
           PP  V    I +  P +V  G +  + C           ++      N+ +   +     
Sbjct: 1   PPRQV----ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLHYETFGKAA 55

Query: 339 KDSAVASSTLNFTRINRINMGAYMCLADN 367
                A++T N T         + CLA  
Sbjct: 56  PAPQEATATFNSTADREDGHRNFSCLAVL 84

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 12/99 (12%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVE---AFPLSVRYWEFIDGTLIEHDGVKYSISDVDK 425
           P Q+++  +   V +G++ T+EC V           +  F     + ++    +     +
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL-FRGNETLHYETFGKAAPAPQE 60

Query: 426 GSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
            +       N +         + C++  ++    G++  
Sbjct: 61  AT----ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 4/72 (5%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS---AVASSTLNFTRINR 355
                  G+ V L C        ++ W  +  + I     +           L      +
Sbjct: 8   EDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 66

Query: 356 INMGAYMCLADN 367
            +   Y  +   
Sbjct: 67  ADAAEYSVMTTG 78

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 6/79 (7%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
              G    LECEV     +V  W      +I     +Y I             L I    
Sbjct: 12  AYCGERVELECEVSEDDANV-KWFKNGEEIIPGPKSRYRIRV-----EGKKHILIIEGAT 65

Query: 441 ISDFDTYRCISKNEVDIAK 459
            +D   Y  ++      AK
Sbjct: 66  KADAAEYSVMTTGGQSSAK 84

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
           +  +S  VV EG  + LRC    +     +    + + +              ++ T   
Sbjct: 4   LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN------HNISITNAT 57

Query: 355 RINMGAYMCLADN 367
             + G Y C    
Sbjct: 58  VEDSGTYYCTGKV 70

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 6/73 (8%)

Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN 354
           +  +  +  +EG+ + LRC +        +      K                 +  + N
Sbjct: 4   VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSD------PNFSIPQAN 57

Query: 355 RINMGAYMCLADN 367
             + G Y C  + 
Sbjct: 58  HSHSGDYHCTGNI 70

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 9/71 (12%), Positives = 12/71 (16%), Gaps = 2/71 (2%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK-DSAVASSTLNFTRINRIN 357
             + V  G+           P     WK            +         L         
Sbjct: 9   YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGM 67

Query: 358 MGAYMCLADNV 368
            G     A N 
Sbjct: 68  TGEVSFQAANA 78

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 8/81 (9%)

Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
           V V +G TA  E E+    +  ++                +  D +         L + N
Sbjct: 11  VEVFVGETAHFEIELSEPDVHGQWK--------LKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 439 VNISDFDTYRCISKNEVDIAK 459
             +         + N    A 
Sbjct: 63  CQLGMTGEVSFQAANAKSAAN 83

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 299 SPIVVREGDNVRLRC-VATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRI 356
            P+ + EG  V   C     +P  S  W        I     +  +  +  L   +    
Sbjct: 12  DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS 71

Query: 357 NMGAYMCLADN 367
           ++G Y C A +
Sbjct: 72  DLGNYSCFATS 82

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 379 VGVPIGRTATLECEVEAFPLS----VRYWEFIDGTLIEHDGVKYSISD-VDKGSYQYIMQ 433
             V +G   T   +V+A  L     +++++     L    G    + +  ++ S  Y  +
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 69

Query: 434 LNISNVNISDFDTYRCISKNEV--DIAKGSLILFESNAKTP 472
           + I     +    YRC    +   D     L + ES   TP
Sbjct: 70  MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPL----SVRYWEFIDGTLIEHDGVKYSISDVD 424
               ++R +   V +G + T    V    L     V++++     L    G    + D  
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 425 KGSYQ-YIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
             + + Y+ +L+I++   +    YRC    +      +  L
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNL 104

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRI 356
           +   +    GD+V L C        + +      KP         A     L    +   
Sbjct: 12  ARGVLTSLPGDSVTLTCPGVEPEDNATVHWV-LRKPAAGSHPSRWAGMGRRLLLRSVQLH 70

Query: 357 NMGAYMCLADN 367
           + G Y C    
Sbjct: 71  DSGNYSCYRAG 81

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 9/92 (9%)

Query: 364 LADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDV 423
           LA    P   +    +    G + TL C       +      +          +++    
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG- 59

Query: 424 DKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
                    +L + +V + D   Y C      
Sbjct: 60  --------RRLLLRSVQLHDSGNYSCYRAGRP 83

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 11/81 (13%), Positives = 22/81 (27%)

Query: 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD 443
                +   V+  P     W F    L E   +     +           L ++     +
Sbjct: 15  MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 74

Query: 444 FDTYRCISKNEVDIAKGSLIL 464
              Y  ++ N    A  S++ 
Sbjct: 75  NGNYTLLAANPFGQASASIMA 95

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--ASSTLNFTRINRINMGA 360
           V +G  +RL           + W  +  +    GS        A  TL  ++ +  +  A
Sbjct: 18  VSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 76

Query: 361 YMCLADN 367
           Y C+   
Sbjct: 77  YQCVVGG 83

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
           V  G    L  E+      V++ +      +      +               L IS  +
Sbjct: 18  VSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIG-------AKRTLTISQCS 70

Query: 441 ISDFDTYRCISKNEVDIAK 459
           ++D   Y+C+   E    +
Sbjct: 71  LADDAAYQCVVGGEKCSTE 89

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 301 IVVREGDNVRLRC-VATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINM 358
           +V    +     C +     K +I W   ++K                 L F      + 
Sbjct: 12  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 71

Query: 359 GAYMCLADN 367
           G Y C+  N
Sbjct: 72  GHYYCVVRN 80

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 287 PTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD------ 340
            ++  ++     S + V E ++++L C  +G   P + WK  +     L  +        
Sbjct: 2   GSVYTAQ-----SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56

Query: 341 ---SAVASSTLNFTRINRINMGAYMCLADN 367
                 +SS + F+ + R + G Y C+   
Sbjct: 57  ADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 7/76 (9%)

Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSW-------KDSAVASSTLNFT 351
           S   +  GD   L C          +     N    +          ++  ++   L+F 
Sbjct: 11  SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFE 70

Query: 352 RINRINMGAYMCLADN 367
            +   + G+Y C A+ 
Sbjct: 71  PVLPNDNGSYRCSANF 86

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 290 VGSEHIFSSSP-IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD-------- 340
           +GS  + SS P + + E + V+L C  +G   P + WK  +     L  + +        
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 341 -SAVASSTLNFTRINRINMGAYMCLADN 367
                 + + F  + R + G Y C+   
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSE 89

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 371 QILIRNRRVGVPIGRTATLECEVEAFP----------------LSVRYWEFIDGTLIEHD 414
           +++     +   +G  A L C +                    +   Y    D    +  
Sbjct: 4   RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 63

Query: 415 GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
             +     + +   +  + L I NV  SD   Y C  ++     + ++ L
Sbjct: 64  EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 3/41 (7%)

Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWK 326
            P +   +           E       C A G+P P +   
Sbjct: 2   GPRLDERD---CPGNWTWPENSQQTPMCQAWGNPLPELKCL 39

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 10/86 (11%)

Query: 383 IGRTATLECEVEAFPLSVRYWEFIDGTL------IEHDGVKYSISDVDKGSYQYIMQLNI 436
           +    T           V + +  D                 +   +D  S      L I
Sbjct: 9   VYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG----SLTI 64

Query: 437 SNVNISDFDTYRCISKNEVDIAKGSL 462
            N+  SD D Y   S N  D  K  L
Sbjct: 65  YNLTSSDEDEYEMESPNITDTMKFFL 90

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 8/85 (9%)

Query: 378 RVGVPIGRTATLECEVE-----AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM 432
            V   +   ATL C             + + +     L    G      +    +   I 
Sbjct: 3   HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62

Query: 433 Q---LNISNVNISDFDTYRCISKNE 454
               + I  +  SD  TY C+    
Sbjct: 63  NNLSIVILALRPSDEGTYECVVLKY 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	902
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.46
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.46
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.44
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.43
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.42
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.38
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.35
d2avga1	110	Cardiac myosin binding protein C, different domain	99.35
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.32
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.32
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.31
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.31
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.3
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.3
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.29
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.29
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.28
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.28
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.27
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.26
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.26
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.24
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.24
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.24
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.23
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.23
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.22
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.2
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.2
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.19
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.19
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.18
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.17
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.15
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.15
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.15
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.11
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.09
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.08
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.07
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.07
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.07
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.06
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.05
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.04
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.03
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.03
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.03
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.0
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.0
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.0
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.99
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.98
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.98
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.98
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.97
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.96
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.96
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.95
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.94
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.94
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.94
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.92
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.92
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.92
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.92
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.91
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.91
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.91
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.91
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.91
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.9
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.89
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.88
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.88
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.87
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.87
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.86
d2avga1	110	Cardiac myosin binding protein C, different domain	98.84
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.83
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.82
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.81
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.81
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.81
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.81
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.79
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.78
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.78
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.77
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.77
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.76
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.76
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.75
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.75
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.73
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.73
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.7
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.67
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.66
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.65
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.64
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.62
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.62
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.61
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.6
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.54
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.54
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.53
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.49
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.44
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.43
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.43
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.37
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.37
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.36
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.06
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.0
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.0
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.99
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.94
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.94
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.88
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.82
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.81
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.81
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.79
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.77
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.77
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.75
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.74
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.68
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.64
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.63
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.63
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.61
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.6
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.6
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.59
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.57
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.56
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.55
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.53
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.52
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.52
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.5
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.49
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.48
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.48
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.46
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.45
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.45
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.45
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.45
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.44
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.44
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.43
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.42
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.42
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.42
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.4
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.39
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.38
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.38
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.37
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.36
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.36
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.35
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.35
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.34
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.34
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.33
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.33
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.33
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.32
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.32
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.32
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.3
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.3
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.3
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.28
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.28
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.28
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.28
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.27
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.27
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.27
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.26
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.26
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.26
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.24
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.24
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.24
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.24
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.23
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.21
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.21
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.2
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.2
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.19
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.18
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.18
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.18
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.18
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.18
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.15
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.15
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.15
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.15
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.15
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.14
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.13
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.13
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.13
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.13
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.12
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.12
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.11
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.11
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.11
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.1
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.1
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.09
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.09
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.08
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.08
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.07
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.05
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.03
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.03
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.03
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.03
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.02
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.02
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.0
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.0
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.0
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.98
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.98
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.97
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.95
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.95
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.95
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.94
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	96.93
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.92
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.91
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.9
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.89
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.89
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.89
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.89
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.88
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.88
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.88
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.88
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.88
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.87
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.86
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.85
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.84
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.83
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.83
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.83
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.82
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.81
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.81
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.79
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.79
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.78
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.77
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.75
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.74
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.74
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.74
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.73
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.72
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.7
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.68
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.68
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.68
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.66
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.65
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.63
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.62
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.62
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.6
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.59
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.59
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.57
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.53
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.52
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.52
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.51
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.51
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.49
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.48
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.47
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.47
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.46
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.46
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.44
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.44
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.43
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.38
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.36
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.36
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.33
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.33
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.31
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.3
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	96.29
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.27
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.24
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.23
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.22
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.22
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.21
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.2
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.2
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.2
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.18
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.17
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.16
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.12
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.11
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.09
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.06
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.02
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.02
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.02
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.99
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	95.95
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.95
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.86
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.84
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.84
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	95.83
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.82
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.76
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.73
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.66
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.62
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.61
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.61
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	95.56
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.54
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	95.53
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.51
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.49
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.49
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	95.49
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.48
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	95.46
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.45
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	95.45
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.45
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.43
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.43
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.4
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	95.38
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.37
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.35
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.32
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.31
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.28
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.28
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.27
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.25
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.25
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	95.25
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	95.24
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.22
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.22
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.21
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	95.19
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.18
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.18
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.17
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.13
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.13
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.13
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.12
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.11
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	95.11
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	95.09
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	95.06
d1gxea_	130	Cardiac myosin binding protein C, different domain	95.04
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	95.04
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.01
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	95.0
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	95.0
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.99
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	94.99
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.96
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.96
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.94
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.94
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.9
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	94.89
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.87
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.86
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.85
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	94.85
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.85
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	94.82
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	94.78
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.77
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.76
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	94.73
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	94.71
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	94.7
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.7
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	94.7
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	94.67
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.66
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	94.64
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.63
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.62
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.58
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	94.57
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.57
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.57
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	94.57
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	94.57
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.56
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.55
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	94.53
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.52
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	94.49
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	94.44
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.44
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.4
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.4
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	94.39
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.39
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.37
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	94.36
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	94.33
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	94.32
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	94.32
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	94.31
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.3
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.27
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	94.25
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.24
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	94.21
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	94.2
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.16
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	94.13
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.11
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.11
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.06
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.03
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	94.02
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	93.97
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.96
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	93.95
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.93
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	93.89
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	93.85
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.83
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	93.8
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	93.73
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	93.68
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.67
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	93.66
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.63
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.62
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	93.59
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	93.56
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	93.55
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	93.49
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	93.46
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	93.4
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	93.37
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.37
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.31
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	93.12
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	93.09
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.07
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.06
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	92.91
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	92.8
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	92.72
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	92.51
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	92.48
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	92.4
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	92.38

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=122.88  Aligned_cols=94  Identities=17%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+........ +... .+    .++|.|.+++.+|+|.|+
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~-~~~~-~~----~~~L~I~~~~~~D~G~Y~   77 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW-YWPE-DN----VCELVIRDVTGEDSASIM   77 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEE-EEEE-TT----EEEEEECSCCGGGCEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEE-Eecc-ce----EEEEEeccCccccCEEEE
Confidence            58898899999999999999999999999999999998877654333222 2221 11    245999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeec
Q psy12803        449 CISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~  468 (902)
                      |+|.|..|.++.++.|.|..
T Consensus        78 c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          78 VKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCcEEEEEEEEEEEE
Confidence            99999999999999999874

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.46  E-value=1.1e-13  Score=124.30  Aligned_cols=95  Identities=25%  Similarity=0.325  Sum_probs=79.2

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+.....  +.+.....+    .++|.|.+++.+|+|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~--~~~~~~~~~----~~~L~I~~~~~~D~G~Y   80 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH--FQIDYDEEG----NCSLTISEVCGDDDAKY   80 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSS--EEEEECTTC----EEEEEESSCCGGGCEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceee--EeEEEecCc----eeeeEecCCCHHhCEEE
Confidence            358888899999999999999999999999999999998877754333  333322222    34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEeec
Q psy12803        448 RCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|+|.|..|..++++.|.|..
T Consensus        81 ~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          81 TCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCcEEEEEEEEEEEE
Confidence            999999999999999999863

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=123.67  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+.....  +.+.....     .++|.|.+++.+|+|.|+|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~--~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C   73 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH--MKVENSEN-----GSKLTILAARQEHCGCYTL   73 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSS--EEEEECSS-----EEEEEETTCCTTTCEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCc--EEEEEecc-----eeEEEEeeCCcccCEEEEE
Confidence            5667778889999999999999999999999999999888755443  33333322     3569999999999999999


Q ss_pred             EEEeCCceeEEEEEEEeecCCCC
Q psy12803        450 ISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      .|.|..|..+.++.|.|.+.|.+
T Consensus        74 ~a~N~~G~~~~~~~l~V~~~P~p   96 (101)
T d2cqva1          74 LVENKLGSRQAQVNLTVVDKPDP   96 (101)
T ss_dssp             EEECSSCEEECCEEEEEECSCSC
T ss_pred             EEEECCCEEEEEEEEEEEecCCC
Confidence            99999999999999999987654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.44  E-value=2e-13  Score=119.64  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=75.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      .|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+...  .++.+..         .+|.|.+++.+|+|.|+
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~--~~~~~~~---------~~L~i~~v~~~D~G~Y~   69 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ--NRIEVSG---------GELRFSKLVLEDSGMYQ   69 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC--SSEEEET---------TEEEESSCCGGGCEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc--ceeeeee---------eeEEEEeecccCCEEEE
Confidence            378889999999999999999999999999999999988766443  3333321         23999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |+|.|..|..++++.|.|.
T Consensus        70 C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          70 CVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEEEE
Confidence            9999999999999999886

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.43  E-value=8.7e-14  Score=123.73  Aligned_cols=95  Identities=21%  Similarity=0.222  Sum_probs=78.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      .|.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+.....  +.+....     ..++|.|.+++.+|+|.|+
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~--~~~~~~~-----~~~~L~I~~~~~~D~G~Y~   73 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK--YMKRYNG-----NDYGLTINRVKGDDKGEYT   73 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTT--BBCCCST-----TEEEEEESCCCSGGGSCEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeE--EEEEecC-----CeeEEEeCCCceecCEEEE
Confidence            48899999999999999999999999999999999998877654332  2222221     1346999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEeecCC
Q psy12803        449 CISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      |+|.|..|..+.++.|.|...+
T Consensus        74 C~a~N~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          74 VRAKNSYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEETTEEEEEEECCEEECSC
T ss_pred             EEEEECCCEEEEEEEEEEeecC
Confidence            9999999999999999997654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.42  E-value=2.1e-13  Score=120.13  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=78.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+.......+..  ...     .++|.|.+++.+|+|.|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~--~~~-----~~~L~I~~~~~~D~G~Y~   74 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA--KSS-----TTSIFFPSAKRADSGNYK   74 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEE--ETT-----EEEEECTTBCGGGCEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecc--ccc-----ceeeccccccccccEEEE
Confidence            6888888899999999999999999999999999999988776544443322  221     346999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|+|..|.+++++.|.|+
T Consensus        75 c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          75 LKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEC
Confidence            9999999999999999874

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.38  E-value=7.9e-13  Score=116.04  Aligned_cols=86  Identities=23%  Similarity=0.269  Sum_probs=71.3

Q ss_pred             CCEEEEc-CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIR-NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~-p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.|... +.++.+.+|++++|.|.+.|.|.|.|.|+++++......       ....      .+|.|.+++.+|+|.|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-------~~~~------~~L~I~~v~~~D~G~Y   70 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW-------LSSE------PLLHIQNVDFEDEGTY   70 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC-------SBSS------SEEEECSCCGGGCEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe-------eeee------eEEEeCCCCccCCEEE
Confidence            5777764 688899999999999999999999999998776542211       1111      2499999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|+|.|.+|..+.++.|.|.
T Consensus        71 ~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          71 ECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999999999999886

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=8.3e-13  Score=115.49  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             CCEEEEcCc-eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNR-RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~-~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.|...+. .+.+.+|+++.|.|.+.|.|.|.|.|++++..+..   .++.+..         ..|.|.+++.+|+|.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~---~~~~~~~---------~~L~i~~v~~~d~G~Y   69 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG---GRATVTD---------SGLVIKGVKNGDKGYY   69 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS---SSEEEET---------TEEEESSCCSTTCEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc---ccEEEee---------eeEEECCCChhhCEEE
Confidence            578887764 46788999999999999999999999998776632   2233221         1399999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|..+.++.|.|.
T Consensus        70 ~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1biha4          70 GCRATNEHGDKYFETLVQVN   89 (89)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEC
Confidence            99999999999999998873

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1e-12  Score=117.18  Aligned_cols=95  Identities=25%  Similarity=0.395  Sum_probs=72.8

Q ss_pred             CCCEEEEcCce--eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceE-EEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRR--VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKY-SISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~--~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~-~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .||.|...+..  ..+.+|+++.|.|.+.|.|.|.|.|++++..+........ ......      .++|.|.+++.+|+
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~   75 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD------SSELTIRNVDKNDE   75 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTT------SCEEEECSCCGGGC
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecC------ceEEEeCCCCcccC
Confidence            36777765553  4567899999999999999999999998876643322111 111111      23599999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeec
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |.|+|+|+|..|.++.++.|.|..
T Consensus        76 G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          76 AEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCEEEEEEEEEEEE
Confidence            999999999999999999999864

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.8e-12  Score=115.52  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccC---CceEEEEecCCeeeec-CCceEEEee-cCCCceeeEeEEEEeccCCCC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFP---LSVRYWEFIDGTLIEH-DGVKYSISD-VDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P---~P~v~W~k~~~~l~~~-~~~~~~~~~-~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .+.|...|.++.+.+|++++|.|.+.|.|   .|.|.|++++...... ...++.... .........++|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            35688889999999999999999999999   6789999876544322 222222221 112223456789999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      +|.|+|.|+|..|.+++++.|.|.++
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999999864

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.32  E-value=3e-13  Score=118.78  Aligned_cols=89  Identities=20%  Similarity=0.282  Sum_probs=73.3

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      |...|.++.+.+|+++.|.|.+.|.|.|.|.|++++..+......++.  ....     .++|.|.+++.+|+|.|+|.|
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~--~~~~-----~~~L~i~~v~~~D~G~Y~C~a   74 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT--TTKY-----KSTFEISSVQASDEGNYSVVV   74 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEE--ECSS-----EEEEECSSCCSCCCEEEEEEC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeee--eecc-----eeEEeecCCCHHHCEEEEEEE
Confidence            445678889999999999999999999999999988777544433322  2221     346999999999999999999


Q ss_pred             EeCCceeEEEEEEEee
Q psy12803        452 KNEVDIAKGSLILFES  467 (902)
Q Consensus       452 ~N~~G~~~~s~~L~V~  467 (902)
                      .|..|..+.++.|.|.
T Consensus        75 ~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          75 ENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             BCSSCBCCEEEEEECC
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999999999999885

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.6e-12  Score=116.21  Aligned_cols=101  Identities=15%  Similarity=0.159  Sum_probs=77.5

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccC---CceEEEEecCCeeee-cCCceEEEee-cCCCceeeEeEEEEeccCCCCCeE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFP---LSVRYWEFIDGTLIE-HDGVKYSISD-VDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P---~P~v~W~k~~~~l~~-~~~~~~~~~~-~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      |...|.++.+.+|++++|.|.+.|.|   .|.|.|++++..... ....++.... .........++|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            55678889999999999999999998   579999988654332 2222332221 111223456779999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803        447 YRCISKNEVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~~p~~  472 (902)
                      |+|.|.|..|..++++.|.|.+++..
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCCc
Confidence            99999999999999999999876554

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=2.5e-12  Score=113.05  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      .+.|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+......++....  .++      |.|.+++.+|+|.|+
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~--~~~------L~I~~~~~~D~G~Y~   72 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNY------LQIRGIKKTDEGTYR   72 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT--TSC------EEETTCCGGGCEEEE
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeee--eee------EEECCCCHHhCEEEE
Confidence            367888899999999999999999999999999999998877665555544332  223      999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.|..+.......|.|.
T Consensus        73 C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          73 CEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             EEEEEGGGTEEEEEEEEEE
T ss_pred             EEEEECcCCEEEEEEEEEE
Confidence            9999998877666666654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.31  E-value=1.8e-12  Score=115.15  Aligned_cols=84  Identities=18%  Similarity=0.213  Sum_probs=67.2

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      .+.+.+|+++.|.|.+.|.|.|.|.|++++..+...............      ++|.|.+++.+|+|.|+|.|.|..|.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH------WSLIMESVVPSDKGNYTCVVENEYGS   87 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG------TEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCc------EEEEECCCCcccCEEEEEEEEECCCE
Confidence            356789999999999999999999999988777543332211111221      34999999999999999999999999


Q ss_pred             eEEEEEEEee
Q psy12803        458 AKGSLILFES  467 (902)
Q Consensus       458 ~~~s~~L~V~  467 (902)
                      ++.++.|.|.
T Consensus        88 ~~~~~~l~Vl   97 (97)
T d3dara1          88 INHTYHLDVV   97 (97)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            9999999873

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.30  E-value=3.6e-12  Score=114.92  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             CCEEEEc-CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec---CC-ceEEEe--ecCCCceeeEeEEEEeccCC
Q psy12803        369 PPQILIR-NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH---DG-VKYSIS--DVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       369 ~P~i~~~-p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~---~~-~~~~~~--~~~~~s~~~~stL~I~~V~~  441 (902)
                      +|.|... |.++.+.+|++++|.|.+.|.|.|.|.|++++......   .. ......  ..........++|.|.+++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5777664 67899999999999999999999999999876432110   11 011100  00001112356799999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        442 SDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|+|.|+|+|.|.+|.+.+++.|.|.
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999999999873

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.3e-12  Score=109.61  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+....                 .+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~-----------------~~l~i~~v~~~DsG~Y~C~a~N~~g~   70 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG-----------------KTLSVSQLELQDSGTWTCTVLQNQKK   70 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES-----------------SEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceeee-----------------eeeeeeecccccccEEEEEEEeCCCE
Confidence            4568999999999999999999999998776553211                 13999999999999999999999999


Q ss_pred             eEEEEEEEeecCC
Q psy12803        458 AKGSLILFESNAK  470 (902)
Q Consensus       458 ~~~s~~L~V~~~p  470 (902)
                      .+..+.|.|...+
T Consensus        71 ~~~~~~v~V~~~~   83 (84)
T d2nxyb2          71 VEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEEEEECEECCC
T ss_pred             EEEEEEEEEEecC
Confidence            9999999998654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7e-12  Score=111.64  Aligned_cols=94  Identities=22%  Similarity=0.322  Sum_probs=74.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeee----ecCCceEEEeecCCCceeeEeEEEEeccC-CC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLI----EHDGVKYSISDVDKGSYQYIMQLNISNVN-IS  442 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~----~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~  442 (902)
                      ||.|...+..+.+.+|+.+.|.|.+.+.|.| .+.|++++....    .....++.+.....     .++|.|.++. .+
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~v~~~~   76 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG-----RSELHIENLNMEA   76 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT-----EEEEEECSCCTTT
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCC-----EEEEEEecccccc
Confidence            7888888889999999999999999999988 699998654321    11223343332222     3569999998 57


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        443 DFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       443 DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |+|.|+|+|.|.+|.++.++.|.|+
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999999999874

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1e-11  Score=110.05  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=71.1

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      +.+.|..+.+.+|+++.|.|.+.+.|. |.|.|+++++........++.......    ..++|.|.+++.+|+|.|+|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~   78 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD----DSSTLTIYNANIDDAGIYKCV   78 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecC----cceEEEcccCchhhceEEEEE
Confidence            556677888999999999999999985 799999877665544444444332221    135699999999999999999


Q ss_pred             EEeCCcee-EEEEEEEee
Q psy12803        451 SKNEVDIA-KGSLILFES  467 (902)
Q Consensus       451 A~N~~G~~-~~s~~L~V~  467 (902)
                      |.|..|.. ++++.|.|.
T Consensus        79 a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          79 VTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEETTTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEEE
Confidence            99999975 567888774

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.1e-12  Score=113.84  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=74.8

Q ss_pred             ceeeeecCceEEE---EEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        377 RRVGVPIGRTATL---ECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       377 ~~~~v~~G~~v~L---~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      ..+.+.+|..+.+   .|.+.|.|.|.|.|++++..+.....................++|.|.+++.+|+|.|+|+|.|
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            4455656665554   5589999999999999887776555444444444444455678899999999999999999999


Q ss_pred             CCceeEEEEEEEeecCCCC
Q psy12803        454 EVDIAKGSLILFESNAKTP  472 (902)
Q Consensus       454 ~~G~~~~s~~L~V~~~p~~  472 (902)
                      .+|.+++++.|.|..+|..
T Consensus        85 ~~G~~~~~i~v~v~~~P~~  103 (107)
T d1he7a_          85 PFGQASASIMAAFMDNPFE  103 (107)
T ss_dssp             TTEEEEEEEEECCCSCTTS
T ss_pred             CCCEEEEEEEEEEEcCCCC
Confidence            9999999999999887643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-12  Score=120.25  Aligned_cols=129  Identities=19%  Similarity=0.233  Sum_probs=79.6

Q ss_pred             ccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEE
Q psy12803        284 LIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       284 ~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      +.||.+........+.+++|.+|++++|.|.+.|.|.|.|.|+|++..+............                   
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~-------------------   62 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP-------------------   62 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCC-------------------
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecc-------------------
Confidence            4577765544444567889999999999999999999999999976554221110000000                   


Q ss_pred             eecCCCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        364 LADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       364 ~A~N~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                                                    .. ......|......... ...++.+....     ..++|.|.+++.+|
T Consensus        63 ------------------------------~~-~~~~~~~~~~~~~~~~-~~~r~~~~~~~-----~~~~L~I~~v~~~D  105 (130)
T d1gxea_          63 ------------------------------ED-TGDSDEWVFDKKLLCE-TEGRVRVETTK-----DRSIFTVEGAEKED  105 (130)
T ss_dssp             ------------------------------CC-CCCSSCCCCSCCCCCS-CSSSCEEEEET-----TEEEEECSCCCTTT
T ss_pred             ------------------------------cc-cccceeeecCCceeec-cCceEEEEECC-----CEEEEEECcCChhc
Confidence                                          00 0000011111111111 11111221111     13469999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEeec
Q psy12803        444 FDTYRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       444 sG~YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      +|.|+|+|.|.+|.+++++.|.|.+
T Consensus       106 ~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_         106 EGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CEEEEEEEEECCCEEEEEEEEEEEC
Confidence            9999999999999999999999864

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.27  E-value=6.5e-12  Score=111.43  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=70.1

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+......++.......     .++|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~   83 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS-----GKRLLFKTTLPEDEGVYTCEVDNG   83 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSST-----TSEEEESSCCGGGCEEEEEEECCS
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecC-----CCEEEEEeccccccEEEEEEEEEC
Confidence            356788999999999999999999999999988877654444443322222     235999999999999999999999


Q ss_pred             Ccee-EEEEEEEee
Q psy12803        455 VDIA-KGSLILFES  467 (902)
Q Consensus       455 ~G~~-~~s~~L~V~  467 (902)
                      +|.. +.++.|.|.
T Consensus        84 ~G~~~s~s~~L~Vl   97 (97)
T d1biha3          84 VGKPQKHSLKLTVV   97 (97)
T ss_dssp             SSSCEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEC
Confidence            9986 457888773

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9e-12  Score=111.85  Aligned_cols=96  Identities=19%  Similarity=0.255  Sum_probs=73.2

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +.|...+....+.+|+++.|.|.+.+.| .|.|.|++++..+...... .........   ...++|.|.+++.+|+|.|
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y   80 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN---ISFFILHFEPVLPNDNGSY   80 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSS---CEEEEEEESSCCGGGCEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCC---ceEEEEEEccccHHHCCeE
Confidence            4556677788999999999999999999 5899999988776543332 222222211   1345799999999999999


Q ss_pred             EEEEEeCCceeE-EEEEEEeec
Q psy12803        448 RCISKNEVDIAK-GSLILFESN  468 (902)
Q Consensus       448 tC~A~N~~G~~~-~s~~L~V~~  468 (902)
                      +|.|.|..|... .++.|.|.+
T Consensus        81 ~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          81 RCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEEEEEEE
Confidence            999999999865 578887764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=111.07  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=70.8

Q ss_pred             ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      ..++.+.|.|.+.|+|.|+|.|++++..+.......+.......  ....++|.|.+++.+|+|.|+|.|+|.+|.++++
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH--TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECS--SEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeeccccc--ccceEEEEECCCCHHhCceEEEEEeccCCEEEEE
Confidence            45677889999999999999999988877654444443332222  2346789999999999999999999999999999


Q ss_pred             EEEEeecCCC
Q psy12803        462 LILFESNAKT  471 (902)
Q Consensus       462 ~~L~V~~~p~  471 (902)
                      +.|.|.+.|.
T Consensus        92 ~~v~V~~~P~  101 (103)
T d1wwbx_          92 ISAHFMGWPG  101 (103)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEEEEeCCC
Confidence            9999987764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-12  Score=115.45  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-EE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-TY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~Y  447 (902)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.|.|++++..+.......     .    ......|.|.+++.+|.| .|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~-----~----~~~~~~L~i~~~~~~d~G~~Y   72 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-----G----GLPSLGLTLANVTSDLNRKNV   72 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC-----C----CSSEEEEEEESCCSTTTTCCE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee-----e----eccceeEEEccccccccceEE
Confidence            5889998889999999999999999999999999999886654321111     0    112346999999999999 69


Q ss_pred             EEEEEeCCceeEEEEEEEe
Q psy12803        448 RCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V  466 (902)
                      +|+|.|.+|.++.++.|.|
T Consensus        73 ~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          73 TCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EECCEETTEECCEEECCCC
T ss_pred             EEEEEcCCCEEEEEEEEEE
Confidence            9999999999999988876

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.5e-11  Score=110.59  Aligned_cols=86  Identities=15%  Similarity=0.042  Sum_probs=67.5

Q ss_pred             CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI  463 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~  463 (902)
                      +....|.|.+.|.|.|++.|++++..+.......+......   ....++|.|.+++.+|+|.|+|+|+|.+|.+++++.
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG---EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN   93 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS---SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeec---ccceEEEEEeecccccceEEEEEEEcCCCEEEEEEE
Confidence            44566888999999999999998877654433333322222   235678999999999999999999999999999999


Q ss_pred             EEeecCCCC
Q psy12803        464 LFESNAKTP  472 (902)
Q Consensus       464 L~V~~~p~~  472 (902)
                      |.|..+|.+
T Consensus        94 v~V~~~P~P  102 (105)
T d1wwca_          94 GHFLKEPFP  102 (105)
T ss_dssp             ECCSCCCCC
T ss_pred             EEEEeCCCC
Confidence            999876654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.4e-12  Score=109.84  Aligned_cols=87  Identities=18%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      |.++.+.+|+++.|.|.+.+.|.|.+.|++++..+.......+..  ...   ...+.|.|.+++.+|+|.|+|.|+|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~--~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV--SEQ---HWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEE--ETT---EEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeee--ccc---CceeeEEECCCCcccCEEEEEEEEECC
Confidence            567889999999999999999999999999887664333222222  121   234569999999999999999999999


Q ss_pred             cee-EEEEEEEee
Q psy12803        456 DIA-KGSLILFES  467 (902)
Q Consensus       456 G~~-~~s~~L~V~  467 (902)
                      |.. +..+.|.|.
T Consensus        78 G~~~S~~~~l~V~   90 (91)
T d1rhfa1          78 ETEISQPVWLTVE   90 (91)
T ss_dssp             TCEECCCEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            976 557888775

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.3e-11  Score=107.32  Aligned_cols=86  Identities=22%  Similarity=0.314  Sum_probs=68.8

Q ss_pred             CEEEE-cCceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        370 PQILI-RNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       370 P~i~~-~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +.+.. .+..+.+.+|+++.|.|.+. +.|.|.+.|++++..+....  . ..         ...+|.|.+++.+|+|.|
T Consensus         2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~-~~---------~~~~L~i~~v~~~d~G~Y   69 (89)
T d1gl4b_           2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--A-MD---------FNGILTIRNVQPSDAGTY   69 (89)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--E-EE---------ETTEEEECSCCGGGCEEE
T ss_pred             CEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc--c-Ee---------eceEEEEecCCcccCEEE
Confidence            33444 56678899999999999997 67889999999887664321  1 11         122499999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|.++.++.|.|+
T Consensus        70 ~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          70 VCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             EEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999874

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.2e-11  Score=107.06  Aligned_cols=82  Identities=13%  Similarity=0.199  Sum_probs=65.9

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      |.|...+.++.+.+|+++.|.|.+.|.|.| +|+|++++..+....          ..      .+.|..+..+|+|.|+
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~----------~~------~~~l~~~~~~d~G~Y~   65 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----------PS------PSVLNVTGVTQSTMFS   65 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE----------ES------SEEEEECCCSSCEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC----------Cc------ceEEecCCccccEEEE
Confidence            789999999999999999999999999998 899999876553211          01      1566667778999999


Q ss_pred             EEEEeCCcee-EEEEEEEee
Q psy12803        449 CISKNEVDIA-KGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~-~~s~~L~V~  467 (902)
                      |+|.|.+|.. +..+.|.|+
T Consensus        66 C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          66 CEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EEEEETTEEEECCCEEEEEC
T ss_pred             EEEEcCCCcEEEEEEEEEEC
Confidence            9999999976 456777663

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-12  Score=112.10  Aligned_cols=80  Identities=13%  Similarity=-0.019  Sum_probs=66.1

Q ss_pred             CCEEEE--cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILI--RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~--~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.|..  .+.++.+.+|+.+.|.|.+.|.|.|++.|++++..+...                    +.|.+++.+|+|.
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~--------------------~~~~~v~~~d~G~   61 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------------------GESVTVTRDLEGT   61 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------------------TSCEECCGGGCEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee--------------------eeeeccccCCCCE
Confidence            345533  356788999999999999999999999999987765321                    3345688999999


Q ss_pred             EEEEEEeCCceeEEEEEEEeec
Q psy12803        447 YRCISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~~  468 (902)
                      |+|+|.|.+|+.+.++.|.|..
T Consensus        62 Y~C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          62 YLCRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEcCCCEEEEEEEEEEEC
Confidence            9999999999999999999875

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-11  Score=106.27  Aligned_cols=87  Identities=21%  Similarity=0.234  Sum_probs=67.8

Q ss_pred             CCEEEEcC-ceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRN-RRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p-~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+...+ ..+.+.+|+++.|.|.+. +.|.|.|.|++.+..+.   ...  . ..      ..++|.|.+++.+|+|.
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~~~--~-~~------~~~~L~i~~v~~~D~G~   69 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---AVQ--S-DT------GRSVLTVRNASLSAAGT   69 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---CEE--E-ES------SEEEEEECSCCGGGCEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---eee--c-cC------ceeeEEcCccChhhCCc
Confidence            35555544 457788999999999885 78999999988776542   111  1 11      13569999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEee
Q psy12803        447 YRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       447 YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |+|+|.|..|..+.++.|.|.
T Consensus        70 Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          70 RVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcEEEEEEEEEC
Confidence            999999999999999999873

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.3e-11  Score=107.42  Aligned_cols=93  Identities=20%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEE-ecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE-FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~-k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|. ++.............+. ..    ...++|.|.++..+|+|.|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~L~I~~v~~~D~G~Y   75 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS-SR----RFIASFNVVNTTKRDAGKY   75 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEE-TT----EEEEEEEECSCCGGGCSEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEE-ee----cCceEEEECCCCHHHCeEE
Confidence            57886 588899999999999999999998865543 33332222111122211 11    2345699999999999999


Q ss_pred             EEEEEeCCceeE-EEEEEEee
Q psy12803        448 RCISKNEVDIAK-GSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~-~s~~L~V~  467 (902)
                      +|+|.|..|... ..+.|.|+
T Consensus        76 ~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          76 RCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEEEEEEC
Confidence            999999999875 44788774

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-11  Score=105.57  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=67.4

Q ss_pred             EEEcCc-eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803        372 ILIRNR-RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI  450 (902)
Q Consensus       372 i~~~p~-~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~  450 (902)
                      +.+.|. .+.+.+|+++.|.|.+.|.|.|.+.|++++..+..  .....  ..      ..++|.|.+++.+|+|.|+|+
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~--~~------~~~~L~I~~v~~~d~G~Y~C~   72 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTN--EG------TTSTLTMNPVSFGNEHSYLCT   72 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEE--ET------TEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCcccee--eeeee--ec------CCcEEEEecccccccceEEEE
Confidence            334343 45567899999999999999999999988766532  11111  11      235699999999999999999


Q ss_pred             EEeCCceeEEEEEEEee
Q psy12803        451 SKNEVDIAKGSLILFES  467 (902)
Q Consensus       451 A~N~~G~~~~s~~L~V~  467 (902)
                      |.|..|..+.++.|.|.
T Consensus        73 a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          73 ATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEEE
Confidence            99999999999999885

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.19  E-value=1.6e-11  Score=107.94  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .|.|...+.++.+.+|+.+.|.|.+.|.|.| .+.|++++..+..... ..... ...+      +|.|.+++.+|+|.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~-~~~~------~L~i~~v~~~D~G~Y   73 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALR-KDEG------SLVFLRPQASDEGHY   73 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-TEEEC-TTSC------CEEESSCCGGGCEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecc-eeeec-ccce------EEEEeccChhcCeEE
Confidence            5888888999999999999999999999976 6999998877644333 23222 2223      399999999999999


Q ss_pred             EEEEEeCCceeE
Q psy12803        448 RCISKNEVDIAK  459 (902)
Q Consensus       448 tC~A~N~~G~~~  459 (902)
                      +|+|.|..|.+.
T Consensus        74 ~C~a~N~~G~~~   85 (94)
T d1biha1          74 QCFAETPAGVAS   85 (94)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEeCCCEEE
Confidence            999999999764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.18  E-value=8.8e-12  Score=110.43  Aligned_cols=89  Identities=19%  Similarity=0.279  Sum_probs=70.7

Q ss_pred             CCCEEEEcCceeeeecC---ceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRRVGVPIG---RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G---~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      ++|.|...|.++.+.+|   ++++|.|.+.|.|.|.+.|++++..+.......+....  .      ..|.|..++.+|+
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~--~------~~l~i~~~~~~d~   74 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--G------DLVISNPVKAKDA   74 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET--T------EEEEESCCHHHHC
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeee--e------eEEEEecccccCC
Confidence            46889999988887776   78999999999999999999988777655444443321  1      2488898999999


Q ss_pred             eEEEEEEEeCCceeE-EEEEE
Q psy12803        445 DTYRCISKNEVDIAK-GSLIL  464 (902)
Q Consensus       445 G~YtC~A~N~~G~~~-~s~~L  464 (902)
                      |.|+|+|.|.+|... .++.|
T Consensus        75 G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          75 GSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEEEEEETTEEEECCCEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEE
Confidence            999999999999864 45555

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.7e-11  Score=106.83  Aligned_cols=97  Identities=24%  Similarity=0.389  Sum_probs=72.4

Q ss_pred             CCEEEEcC-ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEE-----EeecCCCceeeEeEEEEeccCCC
Q psy12803        369 PPQILIRN-RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYS-----ISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       369 ~P~i~~~p-~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~-----~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      .|.|.... ..+.+.+|+++.|.|.+.|.|.|.|.|++++..+.........     ............++|.|.+++.+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            36666544 3466788999999999999999999999877665433222111     11122233445778999999999


Q ss_pred             CCe-EEEEEEEeCCceeEEEEEEE
Q psy12803        443 DFD-TYRCISKNEVDIAKGSLILF  465 (902)
Q Consensus       443 DsG-~YtC~A~N~~G~~~~s~~L~  465 (902)
                      |.| .|+|.|.|.+|.+++.+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999999988886

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-12  Score=116.12  Aligned_cols=99  Identities=19%  Similarity=0.168  Sum_probs=70.2

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      ||.+........+.+|++++|.|.+ .+.|.|.+.|++++..+.....................+.|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5555555556678999999999998 589999999999887765433222111111111112235699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|.+|....+..|.|.
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEECCCceEEEEEEEEE
Confidence            99999999998776555443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=4.4e-11  Score=106.60  Aligned_cols=97  Identities=16%  Similarity=0.276  Sum_probs=71.0

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      |.+......+.+.+|+++.|.|.+.+.|.|.|.|++.+.......  ..... ...........++|.|.+++.+|+|.|
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQIT-APYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEEC-GGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccc-cceeeEEEecCCEEEEeECCccCCEEE
Confidence            566777788899999999999999999999999998766543211  11111 111111222335699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|.|.|..|....++.|.|.
T Consensus        81 ~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          81 TCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999999998777666553

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.4e-11  Score=108.71  Aligned_cols=98  Identities=16%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeec-CCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDV-DKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~-~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +.+...+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+............. ........++|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            445556667889999999999999999999999999877654322111111111 1111112346999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEee
Q psy12803        449 CISKNEVDIAKGSLILFES  467 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.|..|.+...+.|.|.
T Consensus        85 C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEETTSSCEECCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999999887777654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.7e-11  Score=107.57  Aligned_cols=72  Identities=21%  Similarity=0.403  Sum_probs=63.6

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..|++..+.+|+++.|.|.+.|.|.|.+.|+|++..+............+++|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   77 (92)
T d1epfa2           6 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRI   77 (92)
T ss_dssp             ECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEE
T ss_pred             EcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEE
Confidence            356778999999999999999999999999998887776666666666778999999999999999999988

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.7e-11  Score=109.55  Aligned_cols=91  Identities=20%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             eeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCC-CceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        378 RVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDK-GSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~-~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ...+.+|+++.|.|.+. +.|.+.|.|++++..+............... ......++|.|.+++.+|+|.|+|.|+|.+
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            34688999999999985 8999999999987766443222111100000 000112359999999999999999999999


Q ss_pred             ceeEE--EEEEEeec
Q psy12803        456 DIAKG--SLILFESN  468 (902)
Q Consensus       456 G~~~~--s~~L~V~~  468 (902)
                      |...+  .++|.|.+
T Consensus        91 G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          91 GTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SCCEECCCEEEEEES
T ss_pred             CcEEEEEEEEEEEEe
Confidence            98755  55666654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.5e-11  Score=112.15  Aligned_cols=102  Identities=20%  Similarity=0.322  Sum_probs=76.8

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-Ce
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FD  445 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-sG  445 (902)
                      .||.|. .+..+.+.+|+.+.|.|.+.+.| .+.+.|++++..+......++.+...... ....++|.|.+++.+| +|
T Consensus         6 ~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~-~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           6 GPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-EGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             SSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEET-TEEEEEEECTTCCHHHHHS
T ss_pred             cCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccc-cCcEEEEEEeccchhcCCe
Confidence            466665 45567788999999999999964 56899999988876544333333222111 1245679999999999 69


Q ss_pred             EEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        446 TYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       446 ~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      .|+|+|.|.+|.+++++.|.|.....
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~~~~~  109 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQGSEM  109 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             EEEEEEEECCCeEEEEEEEEEECCCC
Confidence            99999999999999999999876543

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.07  E-value=3.1e-11  Score=105.51  Aligned_cols=73  Identities=21%  Similarity=0.435  Sum_probs=59.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..|.++.+.+|+++.|.|.+.|.|.|.|.|+|++..+.......... ...++|.|.+++.+|+|.|+|.|.|
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEE
Confidence            445677899999999999999999999999999887665443322222 2345899999999999999999999

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.3e-10  Score=101.35  Aligned_cols=87  Identities=20%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      |+..+.++.+.+|+++.|.|.+ +.|.+.+.|++++..+......++.+.....     ..+|.|.+++.+|+|.|+|+|
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a   76 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGK-----KHILIIEGATKADAAEYSVMT   76 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETT-----EEEEEEEEECTTTCSEEEEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCC-----ccEEEECccccccCEEEEEEE
Confidence            3456778899999999999999 4688999999988777665555555443322     345999999999999999999


Q ss_pred             EeCCceeEEEEEEEeec
Q psy12803        452 KNEVDIAKGSLILFESN  468 (902)
Q Consensus       452 ~N~~G~~~~s~~L~V~~  468 (902)
                      .|    .+.+++|.|..
T Consensus        77 ~n----~~~~a~l~V~~   89 (90)
T d1x44a1          77 TG----GQSSAKLSVDL   89 (90)
T ss_dssp             TT----EEEEEEEEEEC
T ss_pred             ec----ceEEEEEEEEE
Confidence            77    45667777653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.07  E-value=3.3e-11  Score=105.13  Aligned_cols=72  Identities=24%  Similarity=0.500  Sum_probs=60.1

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ++..+.++.+.+|+++.|.|.+.|.|.|.|+|+|++..+....   .....+++|.|.+++.+|+|.|+|.|.|.
T Consensus         4 f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           4 WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN---RIEVSGGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCS---SEEEETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccc---eeeeeeeeEEEEeecccCCEEEEEEEEeC
Confidence            4556778999999999999999999999999999876554322   23445679999999999999999999983

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.06  E-value=5.4e-11  Score=104.45  Aligned_cols=73  Identities=19%  Similarity=0.319  Sum_probs=59.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.++.+.+|+++.|.|.+.|.|.| .+.|+|++..+............+++|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           7 DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeC
Confidence            34567889999999999999999876 69999987766444433444455679999999999999999999993

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.05  E-value=5.2e-11  Score=104.46  Aligned_cols=73  Identities=19%  Similarity=0.326  Sum_probs=59.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|+++.|.|.+.|+|.|.+.|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             EeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence            3445678999999999999999999999999998877654443322222 234799999999999999999998

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.04  E-value=6.2e-11  Score=104.83  Aligned_cols=74  Identities=18%  Similarity=0.300  Sum_probs=58.3

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++..+.++.+.+|+++.|.|.+.|.|.|.|+|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|
T Consensus         4 f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           4 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             EEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             EEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            34556778899999999999999999999999998766544332222211 223799999999999999999988

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.03  E-value=5.4e-11  Score=104.04  Aligned_cols=67  Identities=24%  Similarity=0.480  Sum_probs=56.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+.++.+.+|++++|.|.+.|.|.|.|.|+|+++....     .....+++|.|.+++.+|+|.|+|.|.|.
T Consensus        11 ~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3          11 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----CCSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce-----EeeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            35678899999999999999999999999997765322     23345678999999999999999999983

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.03  E-value=6e-11  Score=105.13  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecC
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++..+.++.+.+|++++|.|.+.|.|.|.++|+|++..+............+  .+|.|.+++.+|+|.|+|.|.|
T Consensus         7 f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           7 IFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            3445677899999999999999999999999999876664433322222222  3799999999999999999998

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.03  E-value=4.4e-10  Score=97.63  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             cCceeeeecCceEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      .+....+.+|++++|.|.+.+. |.+.+.|++++..+....         ..      ..|.|.+++.+|+|.|+|.|.|
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~---------~~------~~l~i~~v~~~dsG~Y~C~a~n   70 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR---------SD------PNFSIPQANHSHSGDYHCTGNI   70 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES---------SC------CEEEETTCCGGGCEEEEEEEEE
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc---------cc------cccccCccCHHHCCeEEEEEEe
Confidence            3344568899999999999755 667899998876553211         11      2399999999999999999999


Q ss_pred             CCceeE-EEEEEEeecC
Q psy12803        454 EVDIAK-GSLILFESNA  469 (902)
Q Consensus       454 ~~G~~~-~s~~L~V~~~  469 (902)
                      ..|... ..+.|.|..+
T Consensus        71 ~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          71 GYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             TTEEEECCCEEEEECCC
T ss_pred             CCCCEEeeeEEEEEeCC
Confidence            998764 5678888653

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1e-10  Score=104.22  Aligned_cols=73  Identities=22%  Similarity=0.237  Sum_probs=59.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC-CcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|+++.|.|.+.|.|.+.|+|+|++..+............+ .+|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   77 (101)
T d2cqva1           4 IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   77 (101)
T ss_dssp             SCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             EeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence            345677899999999999999999999999999887765444333322222 3799999999999999999999

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.1e-11  Score=102.30  Aligned_cols=71  Identities=21%  Similarity=0.426  Sum_probs=56.4

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecCC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      |.++++.+|++++|.|.+.+.|.|.+.|+|++..+............   ...|.|.+++.+|+|.|+|.|.|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   76 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG   76 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEEC
Confidence            56688999999999999999999999999987665433322222222   237999999999999999999993

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=2e-10  Score=101.29  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+..+.+|++++|.|.+.+ |.+.+.|++++..+......  .+.. ..      .+|.|.+++.+|+|.|+|.|.|..
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~--~~~~-~~------~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERM--TLSQ-NN------SILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTE--EEET-TT------TEEEECSCCGGGCEEEEEEEESSS
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccce--eccC-Cc------eEEEEeccchhhceEEEEEEEeCC
Confidence            45567899999999999876 55899999988776543332  2222 22      249999999999999999999999


Q ss_pred             ceeE-EEEEEEeecCC
Q psy12803        456 DIAK-GSLILFESNAK  470 (902)
Q Consensus       456 G~~~-~s~~L~V~~~p  470 (902)
                      |... ..+.|.|..+|
T Consensus        80 g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          80 SVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             CCEECCCCEEEECCSC
T ss_pred             CCeEEEeEEEEEEcCC
Confidence            9875 56888887655

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-10  Score=99.95  Aligned_cols=62  Identities=18%  Similarity=0.312  Sum_probs=53.2

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+..+.+|++++|.|.+.|.|.|.|.|++++....         ..+..|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~---------~~~~~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2           6 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI---------QGGKTLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             SCSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE---------EESSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEECCCeEEEEEEeEcCCchheEEEeecccce---------eeeeeeeeeecccccccEEEEEEEeC
Confidence            345668999999999999999999999999765542         34568999999999999999999984

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.99  E-value=1.4e-10  Score=104.20  Aligned_cols=79  Identities=19%  Similarity=0.341  Sum_probs=62.5

Q ss_pred             ceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        377 RRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.+.+|+++.|.|.+ .+.|.|.|.|++++..+......++... ...++      |.|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~~------L~I~~v~~~D~G~Y~C~a~N~~   84 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-QTTGN------LYIAKTEASDLGNYSCFATSHI   84 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-TTTCC------EEESSCCGGGCEEEEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-cCCCE------EeecccccccCcEEEEEEEECC
Confidence            45789999999999997 7899999999998877654333333322 22333      9999999999999999999999


Q ss_pred             ceeEEEE
Q psy12803        456 DIAKGSL  462 (902)
Q Consensus       456 G~~~~s~  462 (902)
                      |....++
T Consensus        85 g~~~~~v   91 (105)
T d1cs6a2          85 DFITKSV   91 (105)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            9877664

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.1e-10  Score=98.37  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=64.0

Q ss_pred             CCEEEEcCc-eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNR-RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~-~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.|..... ...+.+|+++.|.|.+. .|.|.+.|++++..+...... +.+.....     ..+|.|.+++.+|+|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~-~~~~~~~~-----~~~L~I~~~~~~D~G~Y   77 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSK-YIFESIGA-----KRTLTISQCSLADDAAY   77 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSS-SEEEEETT-----EEEEEECSCSSSSCEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeee-EeeeccCC-----eEEeecCCCCceecEEE
Confidence            345555443 45789999999999985 588999999999888654332 22222221     34699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEee
Q psy12803        448 RCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V~  467 (902)
                      +|+|.|    .+.++.|.|.
T Consensus        78 ~c~a~n----~~~s~~l~V~   93 (94)
T d1pd6a_          78 QCVVGG----EKCSTELFVK   93 (94)
T ss_dssp             EEEETT----EEECCEEEEE
T ss_pred             EEEEee----EEEEEEEEEE
Confidence            999976    4566677765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.98  E-value=6.4e-10  Score=96.81  Aligned_cols=79  Identities=10%  Similarity=0.048  Sum_probs=60.5

Q ss_pred             cCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      .+....+.+|++++|.|.+.+ .|.+.+.|++++..+....         ..      ..|.|.+++.+|+|.|+|.|.|
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~---------~~------~~l~I~~v~~~dsG~Y~C~a~n   72 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH---------HN------SDFHIPKATLKDSGSYFCRGLV   72 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE---------EC------CCEEESSCCGGGCEEEEEEEEE
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec---------cc------cccEECccceeccceEEEEEEe
Confidence            344556899999999999975 4667899998876553211         11      1399999999999999999999


Q ss_pred             CCceeE-EEEEEEeec
Q psy12803        454 EVDIAK-GSLILFESN  468 (902)
Q Consensus       454 ~~G~~~-~s~~L~V~~  468 (902)
                      ..|... ..+.|.|.+
T Consensus        73 ~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          73 GSKNVSSETVNITITQ   88 (89)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCCeEEeeEEEEEEe
Confidence            998764 567777764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.98  E-value=1.3e-10  Score=103.71  Aligned_cols=73  Identities=21%  Similarity=0.367  Sum_probs=59.1

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc--CCcEEEEeeeeecCceeEEeecC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.++.+.+|+++.|.|.+.|.|.|.|.|+|++..+............  ..+|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_          12 TKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            44567789999999999999999999999999987766544333322222  34799999999999999999998

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.9e-10  Score=100.63  Aligned_cols=88  Identities=10%  Similarity=0.036  Sum_probs=68.0

Q ss_pred             CceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        376 NRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      +..+.+.+|+.+.|.|.+. +.|.++|.|++++..+........++...       ..+|.|.+++.+|+|.|+|+|.|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE-------TTEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc-------CCEEEeccceecCCEEEEEEEECC
Confidence            4456688899999999885 67999999999887654322221111111       124999999999999999999999


Q ss_pred             CceeEEEEEEEeecCC
Q psy12803        455 VDIAKGSLILFESNAK  470 (902)
Q Consensus       455 ~G~~~~s~~L~V~~~p  470 (902)
                      .|..+.++.|.|....
T Consensus        82 ~g~~~~~~~L~V~~~~   97 (101)
T d1iray1          82 SYCLRIKISAKFVENE   97 (101)
T ss_dssp             TEEEEEEEEEEEECCC
T ss_pred             CCeEEEEEEEEEEeCC
Confidence            9999999999998653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=5.3e-11  Score=105.80  Aligned_cols=68  Identities=24%  Similarity=0.423  Sum_probs=53.5

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc---ceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK---DSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~---~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +++.+|+++.|.|.+.|.|.|.|+|+|++..+.......   ......++|.|.+++.+|+|.|+|.|.|.
T Consensus        15 ~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK   85 (100)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEEC
Confidence            556789999999999999999999999876654332211   12234568999999999999999999983

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.96  E-value=3.6e-10  Score=99.84  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee---ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA---VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~---~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.++.+.+|+++.|.|.+.|.|.+.|.|+|++..+..........   ....+|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   82 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDN   82 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEE
Confidence            467889999999999999999999999999877664433322211   2345899999999999999999999

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-10  Score=99.13  Aligned_cols=78  Identities=26%  Similarity=0.455  Sum_probs=60.9

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      ...+.+|+++.|.|.+.+ |.|.+.|++++..+..... ++.+  ..+++      |.|.+++.+|+|.|+|.|.|..|.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~-~~~~--~~~~~------L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESP-KYGL--MGRKN------LLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSS-SBCC--TTTTC------EEECSCCGGGCEEEEEEEEEECSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeee-eeec--ceeeE------EEECCCCHHHCcEEEEEEEEcCCC
Confidence            467899999999999998 6689999998888755433 3222  22233      999999999999999999999987


Q ss_pred             eEEEEEEE
Q psy12803        458 AKGSLILF  465 (902)
Q Consensus       458 ~~~s~~L~  465 (902)
                      .+.+..|.
T Consensus        76 ~~~~~~l~   83 (92)
T d1olza1          76 KTVFQVVA   83 (92)
T ss_dssp             SEEEEEEE
T ss_pred             EEEEEEEE
Confidence            76555443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=95.07  Aligned_cols=81  Identities=17%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             cCceeeeecCceEEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      .+....+.+|++++|.|.+.+. |...+.|++++..+....         .      .+.|.|.+++.+|+|.|+|.|.|
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~---------~------~~~l~i~~~~~~dsG~Y~C~a~n   70 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY---------E------NHNISITNATVEDSGTYYCTGKV   70 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC---------C------SSEEEESSCCGGGCEEEEEEEEE
T ss_pred             eCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc---------c------cceEEEeeeeeecCcEEEEEEEe
Confidence            3445668999999999999776 555899998876553211         1      12499999999999999999999


Q ss_pred             CCcee-EEEEEEEeecCC
Q psy12803        454 EVDIA-KGSLILFESNAK  470 (902)
Q Consensus       454 ~~G~~-~~s~~L~V~~~p  470 (902)
                      ..+.. +..+.|.|..+|
T Consensus        71 ~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          71 WQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             TTEEEECCCEEEEEECSC
T ss_pred             CCCCeEeeeEEEEEEeCC
Confidence            98875 466788887654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.5e-10  Score=99.46  Aligned_cols=69  Identities=16%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..+++.+|++++|.|.+.+.|. ++|+|+|++..+...  .+.....+.+|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1          12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--PSRWAGMGRRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             CTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC--CEEEEEESSEEEECSCCGGGCEEEEEESSS
T ss_pred             CCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce--eeEEecCCCEEEECCCChhcCEEEEEEECC
Confidence            345688999999999999998664 589999987765432  234445677999999999999999999988

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.7e-10  Score=99.28  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.+...+..+.+.+|+++.|.|.+.+.|. ++|+|++++..+... . +.....  ..      +|.|.+++.+|+|.|
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~-~-~~~~~~--~~------~L~I~~v~~~D~G~Y   75 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-P-SRWAGM--GR------RLLLRSVQLHDSGNY   75 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-C-EEEEEE--SS------EEEECSCCGGGCEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce-e-eEEecC--CC------EEEECCCChhcCEEE
Confidence            577777788889999999999999998775 589999998777432 2 222211  12      399999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEe
Q psy12803        448 RCISKNEVDIAKGSLILFE  466 (902)
Q Consensus       448 tC~A~N~~G~~~~s~~L~V  466 (902)
                      +|.|.|..+.   ++.|.|
T Consensus        76 ~C~a~n~~~~---t~~l~V   91 (93)
T d1n26a1          76 SCYRAGRPAG---TVHLLV   91 (93)
T ss_dssp             EEESSSSCSC---EEEEEE
T ss_pred             EEEECCcccc---EEEEEE
Confidence            9999886543   344544

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.92  E-value=1.8e-10  Score=101.80  Aligned_cols=69  Identities=20%  Similarity=0.371  Sum_probs=56.1

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccc--eeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD--SAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ...+.+|+++.|.|.+.|+|.|.|+|+|++..+........  .....++|.|.+++.+|+|.|+|.|.|.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   84 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE   84 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEEC
Confidence            35688999999999999999999999998877654433222  2234568999999999999999999983

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.92  E-value=1.6e-10  Score=102.02  Aligned_cols=74  Identities=22%  Similarity=0.341  Sum_probs=59.0

Q ss_pred             eecCCcEEEEcC---CeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        295 IFSSSPIVVREG---DNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       295 i~~~~~v~v~eG---e~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      +..+.++.+.+|   ++++|.|.+.|.|.|.++|+|++..+............+..|.|..++.+|+|.|+|.|.|.
T Consensus         8 ~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~   84 (97)
T d1cs6a1           8 EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA   84 (97)
T ss_dssp             EECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             EEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEEC
Confidence            445667777776   79999999999999999999987766554444444445567888889999999999999993

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4e-10  Score=98.08  Aligned_cols=68  Identities=28%  Similarity=0.447  Sum_probs=54.9

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|++++..+...  ........++|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~   76 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCE   76 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS--EEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceee--eeeeecCCcEEEEecccccccceEEEEEEeC
Confidence            3466789999999999999999999999987665322  2223334568999999999999999999983

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.92  E-value=8.7e-10  Score=94.78  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...|....+.+|++++|.|.+.+.|.+.+.|.+.++......          .      .+|.|.+++.+|+|.|+
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~------~~l~i~~~~~~d~G~Y~   68 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------A------SSYFIDAATVNDSGEYR   68 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------C------SEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------c------eeeEecCCcccCCEEEE
Confidence            5778888888899999999999999999988766545454443321          1      23999999999999999


Q ss_pred             EEEEeCCceeE
Q psy12803        449 CISKNEVDIAK  459 (902)
Q Consensus       449 C~A~N~~G~~~  459 (902)
                      |.|.|...+..
T Consensus        69 C~a~~s~~S~~   79 (84)
T d1fnla1          69 CQTNLSTLSDP   79 (84)
T ss_dssp             EECSSSCCCCC
T ss_pred             EEccCCCcccc
Confidence            99988766543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=2.1e-10  Score=99.78  Aligned_cols=65  Identities=31%  Similarity=0.618  Sum_probs=53.8

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+++.|.|.+.|.|.|.|+|+|++..+ ...  + ....+..|+|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i-~~~--~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGG--R-ATVTDSGLVIKGVKNGDKGYYGCRATN   75 (89)
T ss_dssp             SEEEECTTSCEEEECEEEEESCCCCEEEETTEEC-CSS--S-EEEETTEEEESSCCSTTCEEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccC-ccc--c-EEEeeeeEEECCCChhhCEEEEEEEEE
Confidence            3467889999999999999999999999977654 222  2 233456899999999999999999998

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.8e-10  Score=97.72  Aligned_cols=67  Identities=21%  Similarity=0.456  Sum_probs=56.0

Q ss_pred             cCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++.+.+|+++.|.|.+. +.|.+.|.|+|++..+...    .....+++|+|.+++.+|+|.|+|.|.|
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS----RAMDFNGILTIRNVQPSDAGTYVCTGSN   75 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT----TEEEETTEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc----ccEeeceEEEEecCCcccCEEEEEEEEE
Confidence            45668899999999999997 6889999999987665432    2344567999999999999999999999

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.7e-10  Score=96.91  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             cEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCCC
Q psy12803        300 PIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      .+.+.+|+++.|.|.+. +.|.+.|+|++.+..+..    .......+.|+|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC----EEEESSEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee----eeccCceeeEEcCccChhhCCcEEEEEEeCC
Confidence            47788999999999875 789999999997765421    2223345689999999999999999998843

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.2e-10  Score=99.48  Aligned_cols=74  Identities=18%  Similarity=0.281  Sum_probs=56.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCcccee-c-cC----CcEEEEeeeeecCceeEEeecCCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSA-V-AS----STLNFTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~-~-~~----~sL~I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      .+++.++.+|+++.|.|.+.|.| .|.|+|+|++..+.......... . .+    ..|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            45567899999999999999988 58999999887765433322211 1 11    259999999999999999999943


Q ss_pred             C
Q psy12803        370 P  370 (902)
Q Consensus       370 P  370 (902)
                      -
T Consensus        89 G   89 (104)
T d2aw2a1          89 N   89 (104)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.91  E-value=3.7e-10  Score=101.41  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=57.5

Q ss_pred             CCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCc-cceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSW-KDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~-~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...+.+.+|+++.|.|.+ .+.|.+.|.|+|++..+...... ......+++|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEE
Confidence            345889999999999997 67899999999988766443333 33444567999999999999999999998

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-09  Score=97.06  Aligned_cols=92  Identities=15%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeec-cCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEA-FPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .|+.+.+.+....+.+|+.++|+|.+.| .|.|  ++.|++++..+.....       .   .....++|.|..+..+|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~-------~---~~~~~s~l~i~~~~~dd~   72 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-------V---GEPAEVTTTVLVRRDHHG   72 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------C---TTTEEEEEEEECCSSCSS
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc-------c---cccceEEEEEeeehhHCC
Confidence            4778888888888999999999999986 5655  5789888766633111       1   112356799999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEeecC
Q psy12803        445 DTYRCISKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       445 G~YtC~A~N~~G~~~~s~~L~V~~~  469 (902)
                      |.|+|.|.|.+|....++.+.+..+
T Consensus        73 g~ytC~A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          73 AQFSCRTELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             CEEEEEEEEECGGGTSCEEEEECCC
T ss_pred             CEEEEEEEeCCCCccCeEeeeEcCC
Confidence            9999999999998877777776543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.5e-09  Score=95.63  Aligned_cols=72  Identities=22%  Similarity=0.323  Sum_probs=55.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCcccee----ccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSA----VASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .|..+.+.+|+++.|.|.+.|.|. +.|.|+|+++..+.....+...    ...++|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            355678999999999999999885 7999999776554433322222    12357999999999999999999984

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.1e-09  Score=95.33  Aligned_cols=70  Identities=11%  Similarity=0.194  Sum_probs=55.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++++.+|+++.|.|.+. .|.+.+.|+|++..+............   ..+|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            45678999999999999995 588999999987666544433332222   23899999999999999999988

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.88  E-value=7.8e-10  Score=96.24  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=51.0

Q ss_pred             CcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCCC
Q psy12803        299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      ....|.+|++|+|.|.+.+ .|.+.+.|+|++..+..       ...++.|.|.+++.+|+|.|+|.|.|..
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~   74 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGS   74 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-------eccccccEECccceeccceEEEEEEeCC
Confidence            3456889999999999874 56778999997755322       2235689999999999999999999843

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.8e-10  Score=99.55  Aligned_cols=71  Identities=23%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADN  367 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N  367 (902)
                      ..+.+.++.+|+++.|.|.+.|.|.|.|+|++++..+.... ..........|.|.+++.+|+| .|+|.|.|
T Consensus         7 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N   78 (92)
T d2ifga1           7 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-MKSGGLPSLGLTLANVTSDLNRKNVTCWAEN   78 (92)
T ss_dssp             EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE-CCCCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             EeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee-eeeeeccceeEEEccccccccceEEEEEEEc
Confidence            35566789999999999999999999999999887654322 2233344568999999999999 69999998

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.4e-10  Score=97.45  Aligned_cols=66  Identities=17%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.+|+++.|.|.+.+ |.|.+.|++++..+.... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n   71 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAES-PKYGLMGRKNLLIFNLSEGDSGVYQCLSEE   71 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCS-SSBCCTTTTCEEECSCCGGGCEEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeee-eeeecceeeEEEECCCCHHHCcEEEEEEEE
Confidence            367999999999999999 678999999877765443 345556678999999999999999999988

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.8e-10  Score=95.49  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=56.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.|...|....+.+|++++|.|.+.+.|.+.+.|++.++......          .      ..|.|.+++.+|+|.|+
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~------~~l~i~~v~~~d~G~Y~   64 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------N------SSLNIVNAKFEDSGEYK   64 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------S------SEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------c------ceeEECCCChhhCCcEE
Confidence            4778888888889999999999999999988655544444332211          1      23999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEe
Q psy12803        449 CISKNEVDIAKGSLILFE  466 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V  466 (902)
                      |.|.|...+..  +.|.|
T Consensus        65 C~a~~s~~S~~--v~l~V   80 (82)
T d1f2qa1          65 CQHQQVNESEP--VYLEV   80 (82)
T ss_dssp             EECTTSSCCCC--EEEEE
T ss_pred             EEecCCCCccc--EEEEE
Confidence            99998766554  44444

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=9.2e-10  Score=94.94  Aligned_cols=67  Identities=22%  Similarity=0.358  Sum_probs=54.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCCC
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      +..+.++.+.+|+++.|.|.+.|.|.| +|+|+|++..+...        ..+.++|..+..+|+|.|+|.|.|..
T Consensus         5 ~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~--------~~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           5 TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP--------APSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             EECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS--------EESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             EEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC--------CCcceEEecCCccccEEEEEEEEcCC
Confidence            446778899999999999999999988 89999977554221        23467788888899999999999933

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.9e-09  Score=97.14  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=56.4

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCC---CCceEEecCCCcccccCCcccee----------ccCCcEEEEeeeeecCce
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHP---KPSIIWKTSENKPITLGSWKDSA----------VASSTLNFTRINRINMGA  360 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P---~p~v~W~k~~~~~~~~~~~~~~~----------~~~~sL~I~~Vt~~DsG~  360 (902)
                      ++..|.++++.+|++++|.|.+.|.|   .|.|.|+|++...+.........          ....+|.|.+++.+|+|.
T Consensus         7 Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   86 (110)
T d2avga1           7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG   86 (110)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEE
T ss_pred             eEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcE
Confidence            45567789999999999999999988   67899999765443332211111          112469999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |+|.|.|
T Consensus        87 Y~C~a~N   93 (110)
T d2avga1          87 YRCEVST   93 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999988

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.83  E-value=1.2e-09  Score=99.11  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             eeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceE---EEeecCCCceeeEeEEEEeccCCCCCe---EEEEE
Q psy12803        378 RVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKY---SISDVDKGSYQYIMQLNISNVNISDFD---TYRCI  450 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~---~~~~~~~~s~~~~stL~I~~V~~~DsG---~YtC~  450 (902)
                      +..+.+|++++|.|.+ .|.|.|.+.|++++..+........   .......+.      |.|.+++.+|+|   .|+|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~------L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN------LYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSC------EEEEEECGGGCCSSEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccc------cEEeeeEeeccCCceEEEEE
Confidence            4567899999999997 8999999999998776543221110   111122333      999999999877   79999


Q ss_pred             EEeCCceeEEEEEEEeecC
Q psy12803        451 SKNEVDIAKGSLILFESNA  469 (902)
Q Consensus       451 A~N~~G~~~~s~~L~V~~~  469 (902)
                      |+|.+|.++..+.+.+...
T Consensus        85 A~N~~g~~~~~~~~~~i~~  103 (111)
T d1biha2          85 AKNAAVDEEVVLVEYEIKG  103 (111)
T ss_dssp             EECTTCSSCEEEEEEEECC
T ss_pred             EEeCCCCceEEEEEEEeCc
Confidence            9999999988877766543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.7e-09  Score=94.59  Aligned_cols=81  Identities=17%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             eeeeecCceEEEEE------EeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        378 RVGVPIGRTATLEC------EVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       378 ~~~v~~G~~v~L~C------~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      .+.+..|....|.|      .+.+.|.|.|.|++++..+.. .+.++....   +      .|.|.+++.+|+|.|+|.|
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~-~~~~~~~~~---~------~L~I~~v~~~D~G~Y~C~a   77 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-DNIHFSGVK---D------RLIVMNVAEKHRGNYTCHA   77 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC-CSSSEEEET---T------EEEESSCCGGGCEEEEEEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC-CCcEEEecC---C------EEEEcccccccCcEEEEEE
Confidence            36788999999999      678999999999998777643 333333221   1      3999999999999999999


Q ss_pred             EeCCcee----EEEEEEEeec
Q psy12803        452 KNEVDIA----KGSLILFESN  468 (902)
Q Consensus       452 ~N~~G~~----~~s~~L~V~~  468 (902)
                      .|..+..    ...+.|.|..
T Consensus        78 ~n~~~g~~~~vt~~i~~~v~~   98 (103)
T d1iray2          78 SYTYLGKQYPITRVIEFITLE   98 (103)
T ss_dssp             EEEETTEEEEEEEEEEEEEEC
T ss_pred             EECcCCEEEEEEEEEEEEECC
Confidence            9987644    3444555443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.3e-10  Score=97.67  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+.++++.+|+++.|.|.+.|+|.|+|+|+|++..+..            .+.|.+++++|+|.|+|+|.|.
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~------------~~~~~~v~~~d~G~Y~C~A~N~   69 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------------IGESVTVTRDLEGTYLCRARST   69 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC------------TTSCEECCGGGCEEEEEEEEET
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee------------eeeeeccccCCCCEEEEEEEcC
Confidence            35678899999999999999999999999998765432            2346688999999999999983

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.5e-09  Score=93.79  Aligned_cols=67  Identities=18%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.|.+|+++.|.|.+.+ |.+.+.|+|++..+............+  .+|.|.+++.+|+|.|+|.|.|
T Consensus        15 ~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             EEEEETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CEEECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            357899999999999965 899999999888775544322233222  3799999999999999999988

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.9e-09  Score=95.84  Aligned_cols=67  Identities=21%  Similarity=0.320  Sum_probs=53.0

Q ss_pred             EEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCccce--------eccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDS--------AVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~--------~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+|++++|.|.+. |.|.+.+.|+|++..+.........        ....+.|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   87 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN   87 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEE
Confidence            4678999999999984 7999999999988776443322211        12245899999999999999999999

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.81  E-value=9.2e-10  Score=95.71  Aligned_cols=70  Identities=13%  Similarity=0.036  Sum_probs=56.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc-CCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.++++.+|+++.|.|.+. .|.|.+.|+|++..+............ ..+|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSS
T ss_pred             CCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECc
Confidence            45779999999999999985 689999999988776554433332222 23799999999999999999988

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.79  E-value=2.4e-09  Score=92.14  Aligned_cols=75  Identities=15%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +|.+.+.|....+.+|++++|.|.+.+.|.+ .+.|++++..+.. .          ..      .|.|.+++.+|+|.|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-~----------~~------~l~i~~v~~~dsG~Y   66 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-H----------TQ------PSYRFKANNNDSGEY   66 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT-C----------CS------SEEEEECCGGGCEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc-c----------cc------ceEEeeccccCCcEE
Confidence            3567777888889999999999999999877 4677766544321 1          11      299999999999999


Q ss_pred             EEEEEeCCceeEE
Q psy12803        448 RCISKNEVDIAKG  460 (902)
Q Consensus       448 tC~A~N~~G~~~~  460 (902)
                      +|.|.|..++...
T Consensus        67 ~C~a~ns~~S~~v   79 (85)
T d2fcba1          67 TCQTGQTSLSDPV   79 (85)
T ss_dssp             EEECTTSBCCCCE
T ss_pred             EEECCCCcccccE
Confidence            9999987665543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.5e-09  Score=98.24  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC---CCceEEecCCCcccccCCccce-e---------ccCCcEEEEeeeeecCcee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP---KPSIIWKTSENKPITLGSWKDS-A---------VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P---~p~v~W~k~~~~~~~~~~~~~~-~---------~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      +..|.++++.+|++++|.|.+.|.|   .|+|.|+|++............ .         ....+|.|.+++.+|+|.|
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   83 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence            3456778999999999999999988   6899999986554332211111 0         1123699999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      +|.|.|
T Consensus        84 ~C~a~N   89 (113)
T d2dava1          84 RCEVTY   89 (113)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999998

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.78  E-value=2.2e-09  Score=93.10  Aligned_cols=63  Identities=16%  Similarity=0.333  Sum_probs=50.5

Q ss_pred             CcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      ....+.+|++|+|.|.+.+ .|.+.+.|+|++..+..       ...++.|.|.+++.+|+|.|+|.|.|.
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~-------~~~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF-------SRSDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-------ESSCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc-------cccccccccCccCHHHCCeEEEEEEeC
Confidence            3456889999999999975 56778999997755322       223568999999999999999999983

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=2.6e-09  Score=96.07  Aligned_cols=66  Identities=26%  Similarity=0.427  Sum_probs=50.7

Q ss_pred             EEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCCcc---------ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        302 VVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWK---------DSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       302 ~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~---------~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.+|++++|.|.+. |.|.+.|+|+|++..+.......         ......+.|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   88 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN   88 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEE
Confidence            578999999999985 79999999999876554332211         1112345899999999999999999999

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.77  E-value=5.6e-10  Score=97.11  Aligned_cols=84  Identities=19%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      |..++.++.+.+|+++.|.|.+ +.|.|.+.|++++..+......  .+.....     ..+|.|.+++.+|+|.|+|.|
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~--~~~~~~~-----~~~L~I~~~~~~D~G~Y~c~a   75 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDC--EIIEDGK-----KHILILHNCQLGMTGEVSFQA   75 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSC--EEEECSS-----CEEEECCSCCSCCCSEECCBC
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeE--EEEeece-----eEEEEEcCCChhcCEEEEEEE
Confidence            4456778999999999999998 5789999999988887554433  3333322     245999999999999999999


Q ss_pred             EeCCceeEEEEEEEee
Q psy12803        452 KNEVDIAKGSLILFES  467 (902)
Q Consensus       452 ~N~~G~~~~s~~L~V~  467 (902)
                      .|..    .++.|.|.
T Consensus        76 ~n~~----~sa~l~V~   87 (89)
T d1tiua_          76 ANAK----SAANLKVK   87 (89)
T ss_dssp             SSCB----CCEEEEEE
T ss_pred             CceE----EEEEEEEE
Confidence            7754    34556664

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.76  E-value=1.8e-09  Score=96.65  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc----CCc-------cc---eeccCCcEEEEeeeeecCceeEE
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL----GSW-------KD---SAVASSTLNFTRINRINMGAYMC  363 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~----~~~-------~~---~~~~~~sL~I~~Vt~~DsG~YtC  363 (902)
                      |.++++.+|++++|.|.+.|.|.|.|.|+|++......    ...       ..   .....+.|.|.+++.+|+|.|+|
T Consensus        12 P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   91 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC   91 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEE
Confidence            57789999999999999999999999999865432110    000       00   01123579999999999999999


Q ss_pred             eecCC
Q psy12803        364 LADNV  368 (902)
Q Consensus       364 ~A~N~  368 (902)
                      .|.|.
T Consensus        92 ~a~N~   96 (109)
T d2fdbp2          92 LAGNS   96 (109)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            99993

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=3.5e-09  Score=92.97  Aligned_cols=68  Identities=24%  Similarity=0.354  Sum_probs=54.6

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.++.+|++++|.|.+.+ +.+.+.|+|++..+.. ..........++|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~-~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQL-TERMTLSQNNSILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCC-CTTEEEETTTTEEEECSCCGGGCEEEEEEEES
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeeccc-ccceeccCCceEEEEeccchhhceEEEEEEEe
Confidence            45677899999999999877 5689999998765533 33333444567899999999999999999999

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.5e-09  Score=94.36  Aligned_cols=91  Identities=14%  Similarity=0.139  Sum_probs=64.5

Q ss_pred             EEcCceeeeecCceEEEEEEeec-c--CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEA-F--PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC  449 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g-~--P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC  449 (902)
                      .+.+....+.+|+.++|+|.+.| .  |.++|+|++++..+.......     .........++|.|.....+|.|.|+|
T Consensus         6 ~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~-----~~~~~~~~~s~l~~~~~~~d~g~~ytC   80 (106)
T d1zxqa1           6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK-----AAPAPQEATATFNSTADREDGHRNFSC   80 (106)
T ss_dssp             EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCS-----STTCTTCEEEEEEEECCGGGGGCEEEE
T ss_pred             EecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccce-----EeecccceeEEEEEeeehhcCCcEEEE
Confidence            34455567889999999999986 4  455899999887765432211     111122346678888888889899999


Q ss_pred             EEEeCCceeEEEEEEEeec
Q psy12803        450 ISKNEVDIAKGSLILFESN  468 (902)
Q Consensus       450 ~A~N~~G~~~~s~~L~V~~  468 (902)
                      .|.|.++.....+.+.+..
T Consensus        81 ~A~n~~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          81 LAVLDLMSRGGNIFHKHSA   99 (106)
T ss_dssp             EEEEECGGGTCCEEEEECC
T ss_pred             EEEecCCCCCCeeEecccC
Confidence            9999998776666666543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=2.1e-09  Score=95.45  Aligned_cols=71  Identities=24%  Similarity=0.541  Sum_probs=55.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC---------ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS---------WKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~---------~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ....+.+.+|++++|.|.+.+.|.|.|.|+|.+........         .......+++|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            34558899999999999999999999999997765432111         112223456899999999999999999988

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.6e-09  Score=92.87  Aligned_cols=73  Identities=15%  Similarity=0.235  Sum_probs=51.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecC--CCcccccCCccceec--cCCcEEEEeeeeecCceeEEeecCCC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTS--ENKPITLGSWKDSAV--ASSTLNFTRINRINMGAYMCLADNVP  369 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~--~~~~~~~~~~~~~~~--~~~sL~I~~Vt~~DsG~YtC~A~N~~  369 (902)
                      .+.++.|.+|++++|.|.+.|.|.|.+.|.+.  +..............  ..++|.|.+++.+|+|.|+|+|.|..
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   83 (96)
T d2c9aa1           7 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG   83 (96)
T ss_dssp             CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCC
Confidence            35678999999999999999999887665432  222222111111111  13479999999999999999999943

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.2e-09  Score=97.24  Aligned_cols=70  Identities=20%  Similarity=0.503  Sum_probs=55.1

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC---------ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS---------WKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~---------~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..+.+.+|++++|.|.+.|.|.|.+.|+|++..+.....         .......+++|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE   89 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEE
Confidence            3457799999999999999999999999998766432211         112223346899999999999999999998

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.4e-09  Score=90.74  Aligned_cols=62  Identities=21%  Similarity=0.262  Sum_probs=49.9

Q ss_pred             CcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ....|.+|++++|.|.+.+ .|...+.|+|++..+..       ......|.|.+++.+|+|.|+|+|.|
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~i~~~~~~dsG~Y~C~a~n   70 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY-------WYENHNISITNATVEDSGTYYCTGKV   70 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS-------CCCSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccc-------ccccceEEEeeeeeecCcEEEEEEEe
Confidence            4456889999999999976 46678999998754422       12346799999999999999999998

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.67  E-value=8.8e-09  Score=88.32  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=49.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .|...++.+|++|+|.|.+.+.|.+.+.|++.++..+.        ....+|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1          11 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             ESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------SSCSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee--------ecceeeEecCCcccCCEEEEEEccC
Confidence            46667899999999999999988886554433443322        2346899999999999999999987

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1e-08  Score=90.59  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCccccc----CCccceec---cCCcEEEEeee-eecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITL----GSWKDSAV---ASSTLNFTRIN-RINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~----~~~~~~~~---~~~sL~I~~Vt-~~DsG~YtC~A~N  367 (902)
                      .+.+..+.+|+++.|.|.+.|.|.+ .+.|+|++......    ...+....   ...+|.|.+++ .+|+|.|+|.|.|
T Consensus         8 ~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N   87 (101)
T d3b5ha1           8 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS   87 (101)
T ss_dssp             SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEE
T ss_pred             cCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEE
Confidence            4566789999999999999999987 69999976433211    11111111   22379999998 4799999999998

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.65  E-value=2e-08  Score=86.23  Aligned_cols=62  Identities=26%  Similarity=0.351  Sum_probs=50.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+....+.+|++|+|.|.+.+.|.+ .+.|+|++..+.         ..++.|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~---------~~~~~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1          10 EPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP---------THTQPSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             ESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT---------TCCSSEEEEECCGGGCEEEEEECTT
T ss_pred             CCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc---------ccccceEEeeccccCCcEEEEECCC
Confidence            4556789999999999999998866 477887654431         2346899999999999999999988

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.64  E-value=4.7e-09  Score=95.17  Aligned_cols=68  Identities=28%  Similarity=0.450  Sum_probs=54.9

Q ss_pred             cEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCC-----ccceeccCCcEEEEeeeeecCc---eeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGS-----WKDSAVASSTLNFTRINRINMG---AYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~-----~~~~~~~~~sL~I~~Vt~~DsG---~YtC~A~N  367 (902)
                      +.++.||++++|.|.+ .|.|.|.+.|+|++..+.....     .+.....+++|.|.+++.+|+|   .|+|.|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEe
Confidence            3457899999999997 7999999999998777543322     2234456789999999999988   69999999

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.2e-08  Score=87.12  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=45.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceE-EecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSII-WKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~-W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .|....+.+|++|+|.|.+.++|.+.+. |+|++..+ .        ..+..|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~-~--------~~~~~l~i~~v~~~d~G~Y~C~a~~   69 (82)
T d1f2qa1           7 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS-E--------ETNSSLNIVNAKFEDSGEYKCQHQQ   69 (82)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEEC-S--------CCSSEEEECSCCGGGCEEEEEECTT
T ss_pred             cCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeee-e--------cccceeEECCCChhhCCcEEEEecC
Confidence            3455678999999999999999887544 56654332 1        2346899999999999999999988

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.4e-08  Score=90.66  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=53.6

Q ss_pred             cccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-----cCCcEEEEeeeeec
Q psy12803        283 LLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-----ASSTLNFTRINRIN  357 (902)
Q Consensus       283 v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-----~~~sL~I~~Vt~~D  357 (902)
                      +.+||.+....   .     ...+....|.|.+.|+|.|+|+|+|++..+...........     ..+.|.|.+++.+|
T Consensus         2 V~~PP~i~~~~---~-----~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   73 (105)
T d1wwca_           2 VYYPPRVVSLE---E-----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN   73 (105)
T ss_dssp             CCCCCCCCCCC---C-----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             EEcCCeeEEeC---C-----CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeeccccc
Confidence            56677664322   1     12345567889999999999999998766544332221111     12469999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|+|.|.|
T Consensus        74 ~G~Y~C~a~N   83 (105)
T d1wwca_          74 NGNYTLIAKN   83 (105)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEEEEc
Confidence            9999999998

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.3e-08  Score=86.93  Aligned_cols=85  Identities=21%  Similarity=0.165  Sum_probs=58.0

Q ss_pred             eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCcee---eEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ---YIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~---~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .+...+|++|+|.|.+. .|.+.|.|++++..+...................   ...+|+|.+++.+|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            46788999999999864 5888999999887665433322222111110000   1234999999999999999999998


Q ss_pred             CceeEEEEE
Q psy12803        455 VDIAKGSLI  463 (902)
Q Consensus       455 ~G~~~~s~~  463 (902)
                      .+..+.+++
T Consensus        83 ~~t~~~~l~   91 (93)
T d1ccza1          83 TDTMKFFLY   91 (93)
T ss_dssp             CSCEEEEEE
T ss_pred             CcEEEEEEE
Confidence            776654443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-08  Score=90.35  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             cCCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803        297 SSSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLADNV  368 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+..+.+.+|+.+.|.|.+. +.|.++|.|+|++..+..... .......+++|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECC
Confidence            34557889999999999886 679999999998876543322 2234445679999999999999999999883

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.2e-08  Score=89.38  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=53.5

Q ss_pred             EEEEcCCeEEEEE------ecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRC------VATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C------~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+|+...|.|      .+.++|.|.|.|+|++..+.. . .......++.|.|.+++.+|+|.|+|.|.|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~-~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-D-NIHFSGVKDRLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC-C-SSSEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC-C-CcEEEecCCEEEEcccccccCcEEEEEEEE
Confidence            4688999999999      577899999999997766543 2 234455567899999999999999999987

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=1.6e-07  Score=85.79  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             EcCceeeeecCceEEEEEEeeccC---CceEEEEecCCeee---ecC------------CceEEEeecCCCceeeEeEEE
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFP---LSVRYWEFIDGTLI---EHD------------GVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P---~P~v~W~k~~~~l~---~~~------------~~~~~~~~~~~~s~~~~stL~  435 (902)
                      .+...+.+.+|++|+|.|.+....   ...|.|++.+....   ...            ..+......  ....-.++|.
T Consensus         7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~sL~   84 (126)
T d1pkoa_           7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE--SIGEGKVALR   84 (126)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECT--TGGGTEEEEE
T ss_pred             CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeec--cccCCeEEEE
Confidence            344457889999999999986432   34689987653211   000            011111111  1111246799


Q ss_pred             EeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803        436 ISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT  471 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~  471 (902)
                      |.+++.+|+|.|+|.+.+..+..+..+.|.|.++..
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             EEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            999999999999999999999999999999987544

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.2e-08  Score=88.12  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec------cCCcEEEEeeeeecCceeEEeecC
Q psy12803        305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV------ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~------~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .++.+.|.|.+.|+|.|+|.|+|++..+...........      ..+.|.|.+++.+|+|.|+|.|+|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN   83 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEec
Confidence            577888999999999999999997776543322221111      124799999999999999999999

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.7e-08  Score=88.75  Aligned_cols=67  Identities=21%  Similarity=0.302  Sum_probs=51.0

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-------------eccCCcEEEEeeeeecCc-eeEEeec
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-------------AVASSTLNFTRINRINMG-AYMCLAD  366 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-------------~~~~~sL~I~~Vt~~DsG-~YtC~A~  366 (902)
                      +.+.+|+++.|.|.+.+.|.|.|.|++++..+.........             ....+.|+|.+++.+|.| .|+|.|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            56778999999999999999999999977554322211100             001247999999999999 5999999


Q ss_pred             C
Q psy12803        367 N  367 (902)
Q Consensus       367 N  367 (902)
                      |
T Consensus        92 N   92 (107)
T d1iray3          92 N   92 (107)
T ss_dssp             C
T ss_pred             e
Confidence            9

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.1e-08  Score=92.55  Aligned_cols=81  Identities=26%  Similarity=0.336  Sum_probs=58.1

Q ss_pred             cccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCCcccccCCccceec----cC---CcEEEEe
Q psy12803        281 SQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAV----AS---STLNFTR  352 (902)
Q Consensus       281 ~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~~~~~~~~~~~----~~---~sL~I~~  352 (902)
                      +++..||.+.      .+..+.+.+|+++.|.|.+.+. |.+.+.|++++..+......+....    .+   +.|.|.+
T Consensus         2 L~V~~Pp~i~------~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~   75 (115)
T d2crya1           2 LTVNGPPIIS------STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISN   75 (115)
T ss_dssp             CCCCSSCCEE------EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             eEEecCCEEe------cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEec
Confidence            4455666553      3345668899999999999995 5667999998877654332222211    11   3699999


Q ss_pred             eeeec-CceeEEeecC
Q psy12803        353 INRIN-MGAYMCLADN  367 (902)
Q Consensus       353 Vt~~D-sG~YtC~A~N  367 (902)
                      ++.+| +|.|+|.|.|
T Consensus        76 v~~~D~~G~Y~C~A~N   91 (115)
T d2crya1          76 IVRADFQTIYNCTAWN   91 (115)
T ss_dssp             CCHHHHHSCEEEEEEC
T ss_pred             cchhcCCeEEEEEEEE
Confidence            99999 7999999999

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.9e-08  Score=88.13  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=48.3

Q ss_pred             cEEEEcCCeEE---EEEecCCCCCCceEEecCCCcccccCCccceec--------cCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVR---LRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--------ASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~---L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ++.+.+|..+.   |.|.+.|.|.|.|.|+|++..+...........        ....|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            34455555555   555899999999999998766543332221111        123699999999999999999998

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.3e-08  Score=83.65  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC----------ccc-eeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS----------WKD-SAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~----------~~~-~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+...+|++|+|.|.+. .|.+.|.|++++..+.....          .+. ....+++|+|.+++.+|+|.|+|.|.|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            347789999999999875 58899999997755432111          111 112356899999999999999999987


Q ss_pred             C
Q psy12803        368 V  368 (902)
Q Consensus       368 ~  368 (902)
                      .
T Consensus        82 ~   82 (93)
T d1ccza1          82 I   82 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.8e-07  Score=82.35  Aligned_cols=82  Identities=20%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             eeeeecCceEEEEEEee-c-cCCceEEEEecCCeeeecC--------CceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        378 RVGVPIGRTATLECEVE-A-FPLSVRYWEFIDGTLIEHD--------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~-g-~P~P~v~W~k~~~~l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+...+|++|+|.|... . .....|.|++++..+....        ..+..+  ..+++      |.|.+++.+|+|.|
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~--~~ngS------L~I~nl~~~DsG~Y   75 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANGD------LKIKNLTRDDSGTY   75 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTSC------EEESSCCGGGCEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEE--CCCcc------EEEeCCCHHHCEEE
Confidence            45677899999999632 2 2345799998876654311        111121  22333      99999999999999


Q ss_pred             EEEEEeCCcee--EEEEEEEee
Q psy12803        448 RCISKNEVDIA--KGSLILFES  467 (902)
Q Consensus       448 tC~A~N~~G~~--~~s~~L~V~  467 (902)
                      +|.+.|..|..  +.++.|.|.
T Consensus        76 ~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          76 NVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEEEEEEE
Confidence            99999999876  677777775

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8e-08  Score=85.95  Aligned_cols=70  Identities=16%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             CCcEEEEcCCeEEEEEecCC-C--CCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATG-H--PKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G-~--P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+..+.+|+.++|.|.+.| +  |.++|+|+|++..+............   ...|.|.....+|.|.|+|+|.|
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n   84 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVL   84 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEE
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEe
Confidence            34456889999999999987 4  45579999987765443222211111   12577777777788899999998

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.7e-08  Score=85.68  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=50.8

Q ss_pred             CCcEEEEcCCeEEEEEecCC-CCCC--ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATG-HPKP--SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G-~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +.+..+.+|++++|.|.+.| +|.+  +++|+|++..+.....  ......++|.|..+..+|+|.|+|+|+|
T Consensus        11 p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~--~~~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1          11 PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--CTTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc--ccccceEEEEEeeehhHCCCEEEEEEEe
Confidence            44556889999999999987 5655  5789998766533211  1122335799999999999999999998

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.8e-06  Score=75.77  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             ceeeeecCceEEEEEEeeccCC----ceEEEEecCCee-------ee-cC-----------CceEEEeecCCCceeeEeE
Q psy12803        377 RRVGVPIGRTATLECEVEAFPL----SVRYWEFIDGTL-------IE-HD-----------GVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~----P~v~W~k~~~~l-------~~-~~-----------~~~~~~~~~~~~s~~~~st  433 (902)
                      ..+.+.+|++|+|.|.+...+.    ..+.|++.....       .. ..           ..+......  .......+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~s   89 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSN--DLKSGDAS   89 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCS--CGGGTBCC
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEcc--CCCCCEEE
Confidence            4577889999999999875543    358898642211       00 00           011111110  00011245


Q ss_pred             EEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803        434 LNISNVNISDFDTYRCISKNEVDIAKGSLILFES  467 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~  467 (902)
                      |.|.+++.+|+|.|.|.+.|..+.....+.|.|.
T Consensus        90 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          90 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999999999988888888875

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.6e-06  Score=73.37  Aligned_cols=84  Identities=23%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecC----------CCceeeEeEEEEeccCCCCCeEEE
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD----------KGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~----------~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +...+|++|+|.|.........+.|++...................          ........+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            5578999999999987777778999876543221111000000000          000011245999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEe
Q psy12803        449 CISKNEVDIAKGSLILFE  466 (902)
Q Consensus       449 C~A~N~~G~~~~s~~L~V  466 (902)
                      |.+.+.    +..+.|.|
T Consensus        84 C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          84 CEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EEETTE----EEEEEEEE
T ss_pred             EEEecC----CeEEEEEC
Confidence            999653    34555544

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2.3e-06  Score=76.39  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=53.2

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecCCee-----eec---C---------CceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTL-----IEH---D---------GVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l-----~~~---~---------~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ..+.+|++|.|.|.........+.|++.....     ...   .         ..+..+  ..+++      |.|.+|+.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l--~~ngS------L~I~~v~~   80 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII--YSNGS------LLFQMITM   80 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE--CTTSC------EEECSCCG
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE--ccccc------EEEcCCCc
Confidence            35779999999997543345689998754321     100   0         112222  23333      99999999


Q ss_pred             CCCeEEEEEEEeCCc-eeEEEEEEEe
Q psy12803        442 SDFDTYRCISKNEVD-IAKGSLILFE  466 (902)
Q Consensus       442 ~DsG~YtC~A~N~~G-~~~~s~~L~V  466 (902)
                      +|+|.|+|.+.+..+ ..++++.|.|
T Consensus        81 ~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          81 KDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             GGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             hhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            999999999988864 4556666655

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=2.2e-06  Score=75.18  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             cEEEEcCCeEEEEEecCC--CCCCceEEecCCCccccc--------CCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATG--HPKPSIIWKTSENKPITL--------GSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~~~~~--------~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+....|++|+|.|....  .....|.|+|++..+...        ...+.....+++|+|.+++.+|+|.|+|.+.+
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEe
Confidence            467789999999997432  233579999976544221        11233445678999999999999999999976

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=2.8e-06  Score=75.84  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=47.6

Q ss_pred             EEcCCeEEEEEecCCCCCCceEEecCCCcccc-----------------cCCccceeccCCcEEEEeeeeecCceeEEee
Q psy12803        303 VREGDNVRLRCVATGHPKPSIIWKTSENKPIT-----------------LGSWKDSAVASSTLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~-----------------~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A  365 (902)
                      +.+|++|.|.|.........+.|+|.......                 .-..+.....+++|.|.+|+.+|+|.|+|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            67999999999854444668999985432110                 0113445567789999999999999999998


Q ss_pred             cC
Q psy12803        366 DN  367 (902)
Q Consensus       366 ~N  367 (902)
                      .+
T Consensus        91 ~~   92 (107)
T d1l6za1          91 TD   92 (107)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.2e-06  Score=72.96  Aligned_cols=67  Identities=19%  Similarity=0.355  Sum_probs=48.3

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCccccc----------CC--ccc------eeccCCcEEEEeeeeecCceeE
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL----------GS--WKD------SAVASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~----------~~--~~~------~~~~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      +...+|++|+|.|.........+.|++........          ..  .+.      ....+.+|+|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            56789999999999888777889999865432110          00  010      0112347999999999999999


Q ss_pred             EeecC
Q psy12803        363 CLADN  367 (902)
Q Consensus       363 C~A~N  367 (902)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99876

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=3.7e-05  Score=68.80  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc----CCceEEEEecCC-----e-eeec-CC-----------ceEEEeecCCCcee
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF----PLSVRYWEFIDG-----T-LIEH-DG-----------VKYSISDVDKGSYQ  429 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~----P~P~v~W~k~~~-----~-l~~~-~~-----------~~~~~~~~~~~s~~  429 (902)
                      +...+..+.+.+|++|+|.|.....    ....|.|++...     . +... ..           .++.......   .
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~   78 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPS---W   78 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGG---G
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECC---C
Confidence            3456777889999999999987532    234789986431     1 1100 00           1111111100   0


Q ss_pred             eEeEEEEeccCCCCCeEEEEEEEeCCc--eeEEEEEEEee
Q psy12803        430 YIMQLNISNVNISDFDTYRCISKNEVD--IAKGSLILFES  467 (902)
Q Consensus       430 ~~stL~I~~V~~~DsG~YtC~A~N~~G--~~~~s~~L~V~  467 (902)
                      ...+|.|.+++.+|+|.|.|.+.+..+  .....++|.|.
T Consensus        79 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            123599999999999999999998543  34566777765

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.82  E-value=2.5e-05  Score=70.17  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=55.5

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC-----eeee-c-C-----CceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG-----TLIE-H-D-----GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~-----~l~~-~-~-----~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +...|..+.+.+|++|+|.|.........+.|++...     .+.. . .     ..++.......   ....+|.|.++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~sL~i~~~   79 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDAD---TKQSSLHITAS   79 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSS---SSEEEEEECSC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCc---ccccccEEccc
Confidence            4556778889999999999998877777899997532     1111 0 0     11222222111   23567999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          80 QLSDSASYICVVSDR   94 (114)
T ss_dssp             CGGGCSEEEEEEECS
T ss_pred             ChhhCcccceeeecC
Confidence            999999999999875

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3e-05  Score=69.47  Aligned_cols=93  Identities=12%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             cCceeeeecCceEEEEEEeecc---CCceEEEEecCCe----ee-ec-------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF---PLSVRYWEFIDGT----LI-EH-------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~---P~P~v~W~k~~~~----l~-~~-------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      .|..+.+.+|++|+|.|.....   ....+.|++....    ++ ..       ...+..+......   ...+|.|.++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~sL~I~~l   81 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN---GTFVVNIAQL   81 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTT---TEEEEEECSC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCC---CEEEEEEhhh
Confidence            5677889999999999987532   2235789764311    11 11       1112222222211   1356999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803        440 NISDFDTYRCISKNEVDIAKGSLILFESNAK  470 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p  470 (902)
                      +.+|+|.|.|.+..........+.|.|.+..
T Consensus        82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          82 SQDDSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             CGGGCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CcCCCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            9999999999987554444567788887643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.81  E-value=2.7e-05  Score=70.05  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEec
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      .+...+..+.+.+|++|+|.|.........+.|++...    .++..        ...++.......   .....|.|.+
T Consensus         3 ~V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~   79 (115)
T d1lp9e1           3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKS---SSSFHLQKSS   79 (115)
T ss_dssp             EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGG---GTBCCEEESS
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCC---CCeEEeeccc
Confidence            35566777889999999999999877778899987531    11100        011122211111   1123499999


Q ss_pred             cCCCCCeEEEEEEEeCC
Q psy12803        439 VNISDFDTYRCISKNEV  455 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~~  455 (902)
                      ++.+|+|.|.|.+....
T Consensus        80 ~~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          80 AQLSDSALYYCALFLAS   96 (115)
T ss_dssp             CCGGGCEEEEEEEEECS
T ss_pred             cccccCccceEEEEcCC
Confidence            99999999999887653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=9.5e-05  Score=66.24  Aligned_cols=80  Identities=15%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc-CCceEEEEecC--Ce---eee--------cCCceEEEeecCCCceeeEeEEEEe
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFID--GT---LIE--------HDGVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~--~~---l~~--------~~~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ++..|..+.+.+|++|+|.|.+... ....+.|++..  ..   +..        ....++.+....+.   ....|.|.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~---~~~~L~I~   78 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNR---HDFHMNIL   78 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTS---SEEEEEES
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCC---CEEEEEEC
Confidence            4567788899999999999998654 34578998742  11   111        11223333332222   23569999


Q ss_pred             ccCCCCCeEEEEEEEeC
Q psy12803        438 NVNISDFDTYRCISKNE  454 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~  454 (902)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          79 DTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccCcCCCeEEEEEEEeC
Confidence            99999999999988654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=8.8e-06  Score=73.83  Aligned_cols=68  Identities=18%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             cEEEEcCCeEEEEEecCC---CCCCceEEecCCCcccc----------c-----CCcccee------ccCCcEEEEeeee
Q psy12803        300 PIVVREGDNVRLRCVATG---HPKPSIIWKTSENKPIT----------L-----GSWKDSA------VASSTLNFTRINR  355 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G---~P~p~v~W~k~~~~~~~----------~-----~~~~~~~------~~~~sL~I~~Vt~  355 (902)
                      ++.+.+|++|+|.|.+..   .....|.|++.+.....          .     ...+...      ..+.+|+|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            488999999999999753   23445899986543210          0     0011111      1234899999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|+|.+.+
T Consensus        91 ~D~G~Y~C~v~~  102 (126)
T d1pkoa_          91 SDEGGYTCFFRD  102 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hHCeEEEEEEEE
Confidence            999999999866

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=4.3e-05  Score=69.47  Aligned_cols=81  Identities=16%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce------eeecC--C------------ceEEEeecCCC
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT------LIEHD--G------------VKYSISDVDKG  426 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~------l~~~~--~------------~~~~~~~~~~~  426 (902)
                      +|.+...|..+.+.+|++|+|.|.+.......+.|++..  ..      ++...  .            .++....... 
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-   79 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN-   79 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT-
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC-
Confidence            477888899999999999999999988888889998732  11      11100  0            1111111111 


Q ss_pred             ceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        427 SYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       427 s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                         ...+|+|.+++.+|+|.|.|.+.-
T Consensus        80 ---~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          80 ---NKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             ---TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ---CEeEEEEcccccCCCEEEEeeEeC
Confidence               134699999999999999998753

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.1e-05  Score=67.61  Aligned_cols=83  Identities=12%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      .+|.+...+.. .|..|++|+|.|... .+...+.|++++...........      .........+.|.+|+.+|+|.|
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~------~~~~~~~a~F~l~~vt~~~~G~Y   77 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL------KFWNETDPEFVIDHMDANKAGRY   77 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEEC------C----CCCEEEECSCCGGGCEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccc------cCCCCceEEEEecCCCHHHCceE
Confidence            35778877765 488999999999765 34567888887653322111100      00111234599999999999999


Q ss_pred             EEEEEeCCcee
Q psy12803        448 RCISKNEVDIA  458 (902)
Q Consensus       448 tC~A~N~~G~~  458 (902)
                      +|...+.....
T Consensus        78 ~C~y~~~~~~S   88 (99)
T d1ucta1          78 QCQYRIGHYRF   88 (99)
T ss_dssp             EEEEEETTTEE
T ss_pred             EEEEECCCccc
Confidence            99999987644

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=6.5e-05  Score=66.65  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             CEEEEcCceeeeecCceEEEEEEeec-cCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        370 PQILIRNRRVGVPIGRTATLECEVEA-FPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       370 P~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      |.|....   .+.+|+.++|.|.+.+ .|.+  .|.|++++..+......   ......+.+..+++|.+.-...+|...
T Consensus         5 P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~---~~~~~~~~~~~~s~l~~~~~~~D~g~~   78 (109)
T d1vcaa1           5 PEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL---EDADRKSLETKSLEVTFTPVIEDIGKV   78 (109)
T ss_dssp             CEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC---SCCSSCCCEEEEEEEEECCCGGGTTCE
T ss_pred             CEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccc---cccccCCcceeeEEEEccCChHHCCcE
Confidence            5555433   3789999999999874 6754  68898776655332211   111233344556778887544444448


Q ss_pred             EEEEEEeCCce-------eEEEEEEEeecC
Q psy12803        447 YRCISKNEVDI-------AKGSLILFESNA  469 (902)
Q Consensus       447 YtC~A~N~~G~-------~~~s~~L~V~~~  469 (902)
                      |+|.|+|.++.       .+.+..|.|..+
T Consensus        79 ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          79 LVCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEEEcCcCCccccccccceeEEeEEEeC
Confidence            99999998654       234455666543

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.68  E-value=8.4e-05  Score=66.79  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             EEEEcCceeeeecCceEEEEEEeecc-CCceEEEEec--CCee---eecC----------CceEEEeecCCCceeeEeEE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFI--DGTL---IEHD----------GVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~--~~~l---~~~~----------~~~~~~~~~~~~s~~~~stL  434 (902)
                      .++..+..+.+.+|++|+|.|..... ....+.|++.  +..+   ....          ..++.+.....   ....+|
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L   78 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILT---QKAFHL   78 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGG---GTEEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCc---eeEEee
Confidence            34556777889999999999988644 5668999863  2221   1111          11222221111   123469


Q ss_pred             EEeccCCCCCeEEEEEEEeCCce
Q psy12803        435 NISNVNISDFDTYRCISKNEVDI  457 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~~G~  457 (902)
                      +|.+++.+|+|.|.|.+....+.
T Consensus        79 ~I~~~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          79 VISPVRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             EESSCCGGGCEEEEEEEECTTTT
T ss_pred             eecCccccccccceeeEecCCCC
Confidence            99999999999999988765443

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00014  Score=62.95  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=57.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+..+ |..|++|+|.|... .+...+.|++++........        ........+.+.|.+|+.+|+|.|+
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~--------~~~~~~~~a~F~i~~v~~~~~G~Y~   73 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP--------KPPERINKVKFYIPDMNSRMAGQYS   73 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC--------SSCTTCCEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE--------ccCCCccEEEEEEeeeecCCCceEE
Confidence            57777777654 78999999999864 23457778776543321110        0011122356999999999999999


Q ss_pred             EEEEeCCcee--EEEEEEEe
Q psy12803        449 CISKNEVDIA--KGSLILFE  466 (902)
Q Consensus       449 C~A~N~~G~~--~~s~~L~V  466 (902)
                      |...+.....  +..+.|.|
T Consensus        74 C~y~~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          74 CIYRVGELWSEPSNLLDLVV   93 (95)
T ss_dssp             EEEEETTEECCCCCCEEEEE
T ss_pred             EEeCCCCCccCCCCCEEEEE
Confidence            9998876533  33444544

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.63  E-value=0.0001  Score=65.86  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee---e-ecC------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL---I-EHD------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l---~-~~~------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +...|..+.+.+|++|+|.|.+.......+.|++..  ..+   . ...      ..++........   ...+|.|.++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~   79 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS---GRSTLYIAAS   79 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTT---TEEEEEESSC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCC---CEEEeeeecC
Confidence            455677888999999999999987777789999743  211   1 001      011111111111   2456999999


Q ss_pred             CCCCCeEEEEEEEeCCc
Q psy12803        440 NISDFDTYRCISKNEVD  456 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G  456 (902)
                      +.+|+|.|.|.+....+
T Consensus        80 ~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          80 QPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             CGGGCEEEEEEEEESSS
T ss_pred             CCCCCcEEeEeEecCCC
Confidence            99999999999876543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.1e-05  Score=68.70  Aligned_cols=67  Identities=12%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...|..|++|+|.|.+.. +...+.|+|++..........  ........+.|.+|+.+|+|.|.|...+
T Consensus        15 ~~~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1          15 SPVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CSEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            345889999999998764 566889998765432221111  1112334799999999999999998765

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2e-05  Score=68.46  Aligned_cols=66  Identities=11%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      -.|..|++|+|.|.... ....+.|+|++..................+.|.+|+.+|+|.|.|...+
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1          13 FMVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             SEEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCC
Confidence            45789999999999764 4567888887643221111111111224799999999999999998754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.60  E-value=0.00016  Score=64.70  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc--CCceEEEEecC--Ce--eeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF--PLSVRYWEFID--GT--LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~--~~--l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +...|..+.+.+|++|+|.|.+.+.  ....+.|++..  ..  ++.....++........   ....|+|.+++.+|+|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS---KSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCC---CceeeeecccccCCcc
Confidence            4556778889999999999998754  44578998642  11  11222223333222211   1346999999999999


Q ss_pred             EEEEEEEe
Q psy12803        446 TYRCISKN  453 (902)
Q Consensus       446 ~YtC~A~N  453 (902)
                      .|.|.+..
T Consensus        80 ~YyCa~~~   87 (113)
T d1vesa_          80 TYKCQAFY   87 (113)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeeec
Confidence            99999854

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.60  E-value=6.2e-05  Score=67.52  Aligned_cols=80  Identities=15%  Similarity=0.232  Sum_probs=52.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--C--eee-ecC--C------ceEEEeecCCCceeeEeEEEEec
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--G--TLI-EHD--G------VKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~--~l~-~~~--~------~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ++..+..+.+.+|++|+|.|.....-...+.|++..  .  .++ ...  .      .++.......   .....|+|.+
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~   79 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKS---ETSFHLTKPS   79 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGG---GTBCCEEESS
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCC---CCEEEEeecc
Confidence            455677788999999999999877666789998742  1  111 111  0      1111111111   1123599999


Q ss_pred             cCCCCCeEEEEEEEeC
Q psy12803        439 VNISDFDTYRCISKNE  454 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~  454 (902)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          80 AHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             ccccCCccceeeecCC
Confidence            9999999999998764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.59  E-value=0.00011  Score=64.90  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--eec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++..  ..+  +..        ...++......     ....|+|.++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~L~I~~~   77 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG-----RDYSFSISNL   77 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEECSC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC-----CEeeeEehhh
Confidence            445577788999999999999877666679998742  111  111        11122222211     2356999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|.+.+
T Consensus        78 ~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          78 EPEDIATYYCLQYY   91 (106)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCEeEEEEEeC
Confidence            99999999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=5.5e-05  Score=66.47  Aligned_cols=73  Identities=18%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             eeeeecCceEEEEEEeeccC----CceEEEEecCCeeeecCCc----------eEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        378 RVGVPIGRTATLECEVEAFP----LSVRYWEFIDGTLIEHDGV----------KYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~~~l~~~~~~----------~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .+.+.+|++|+|.|......    .-.+.|.+++..+......          +......++      .+|.|.+++.+|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~------~sL~I~~v~~~D   76 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN------LSIVILALRPSD   76 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT------TEEEECSCCGGG
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCc------EEEEECcCChHH
Confidence            35688999999999775432    1357887766554322111          112221222      359999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy12803        444 FDTYRCISKNEVD  456 (902)
Q Consensus       444 sG~YtC~A~N~~G  456 (902)
                      +|.|.|.+.+..+
T Consensus        77 ~G~Y~C~V~~~~~   89 (105)
T d1dr9a1          77 EGTYECVVLKYEK   89 (105)
T ss_dssp             CEEEEEEEEECCT
T ss_pred             CeEEEEEEEeCCC
Confidence            9999999987543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.56  E-value=0.00019  Score=64.19  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEec--CCe---eeec--CCc------eEEEeecCCCceeeEeEEEEec
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI--DGT---LIEH--DGV------KYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~--~~~---l~~~--~~~------~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      +...+..+.+.+|++|+|.|.........+.|++.  +..   +...  ...      ..........   ....|+|.+
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~   79 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSN---SSFHLRKAS   79 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTT---TBCCEEESS
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcC---CEEEEeccc
Confidence            44556678899999999999987666677889863  211   1110  110      0111111111   124599999


Q ss_pred             cCCCCCeEEEEEEEeC
Q psy12803        439 VNISDFDTYRCISKNE  454 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~  454 (902)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          80 VHWSDSAVYFCAVSGF   95 (115)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             ccccccceecccccCC
Confidence            9999999999987654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3e-05  Score=69.42  Aligned_cols=73  Identities=15%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC---CCCceEEecCCCcc----c-cc-------CCccceec-----cCCcEEEEeee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH---PKPSIIWKTSENKP----I-TL-------GSWKDSAV-----ASSTLNFTRIN  354 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~---P~p~v~W~k~~~~~----~-~~-------~~~~~~~~-----~~~sL~I~~Vt  354 (902)
                      |..|+.+.+.+|++|+|.|.....   ....+.|+|....-    + ..       ...+....     .+.+|+|.+++
T Consensus         3 it~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~   82 (116)
T d1xeda_           3 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   82 (116)
T ss_dssp             SBCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ccCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhC
Confidence            345677899999999999987542   23457898743211    0 00       00111111     11379999999


Q ss_pred             eecCceeEEeecC
Q psy12803        355 RINMGAYMCLADN  367 (902)
Q Consensus       355 ~~DsG~YtC~A~N  367 (902)
                      .+|+|.|.|.+..
T Consensus        83 ~~DsG~Y~C~v~~   95 (116)
T d1xeda_          83 QDDSGRYKCGLGI   95 (116)
T ss_dssp             GGGCEEEEEEESC
T ss_pred             cCCCEEEEEEEEc
Confidence            9999999998866

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0005  Score=59.33  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             cCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803        383 IGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS  461 (902)
Q Consensus       383 ~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s  461 (902)
                      .++.++|.|.+.+ +|.+.|.|++++..+..  ..........++.|...+.|.|..   .+...|+|.++...-.....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~--~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNA--INTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECC--SEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecc--cceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCcEE
Confidence            5778999999987 59999999988776633  222233344567788888998863   45679999999886655544


Q ss_pred             E
Q psy12803        462 L  462 (902)
Q Consensus       462 ~  462 (902)
                      +
T Consensus        90 ~   90 (95)
T d1dr9a2          90 F   90 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.52  E-value=2.7e-05  Score=68.60  Aligned_cols=71  Identities=20%  Similarity=0.387  Sum_probs=47.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc--ccC--------Ccccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI--TLG--------SWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~--~~~--------~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|.........+.|+|....  +.  ...        ..+...   .....|.|.+++.+|+|.|
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            34568899999999999987755567899984321  11  000        001111   1123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        84 yCA~~~   89 (103)
T d8faba1          84 YCQAWD   89 (103)
T ss_dssp             EEEEEE
T ss_pred             EeeecC
Confidence            997643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.52  E-value=0.00012  Score=64.67  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=51.9

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEec--CCee--ee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI--DGTL--IE--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~--~~~l--~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++.  +..+  +.        ....++......     ...+|+|.++
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~-----~~~~L~I~~~   78 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG-----TDFVFTIENT   78 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC-----CeeeecccCC
Confidence            44557778899999999999887666667999864  2211  11        111222222111     1356999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          79 LSEDVGDYYCLQSF   92 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccccCEEEeEecCc
Confidence            99999999997654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=6.7e-05  Score=67.19  Aligned_cols=71  Identities=23%  Similarity=0.407  Sum_probs=49.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc----c-cc-cCC------cccee-----ccCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK----P-IT-LGS------WKDSA-----VASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~----~-~~-~~~------~~~~~-----~~~~sL~I~~Vt~~DsG  359 (902)
                      .|..+.+.+|++|+|.|.........+.|+|....    . +. ...      .+...     ....+|+|.+++.+|+|
T Consensus         6 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg   85 (114)
T d2cdea1           6 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSA   85 (114)
T ss_dssp             ECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCS
T ss_pred             eCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCc
Confidence            45678899999999999988766778999974321    1 10 000      01111     11237999999999999


Q ss_pred             eeEEeecC
Q psy12803        360 AYMCLADN  367 (902)
Q Consensus       360 ~YtC~A~N  367 (902)
                      .|.|.+..
T Consensus        86 ~Y~Ca~~~   93 (114)
T d2cdea1          86 SYICVVSD   93 (114)
T ss_dssp             EEEEEEEC
T ss_pred             ccceeeec
Confidence            99998866

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.50  E-value=6.1e-05  Score=67.36  Aligned_cols=70  Identities=21%  Similarity=0.365  Sum_probs=48.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc---c---------CCccceec---cCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT---L---------GSWKDSAV---ASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~---~---------~~~~~~~~---~~~sL~I~~Vt~~DsG  359 (902)
                      .|..+.+.+|++|+|.|...+.....+.|+|..  ..+..   .         .+......   ...+|.|.+++.+|+|
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            456788999999999999887666779999832  21110   0         00001111   1237999999999999


Q ss_pred             eeEEeec
Q psy12803        360 AYMCLAD  366 (902)
Q Consensus       360 ~YtC~A~  366 (902)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (113)
T d2bnqd1          86 TYLCAVR   92 (113)
T ss_dssp             EEEEEEE
T ss_pred             EEeEeEe
Confidence            9999875

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00024  Score=62.66  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             CceeeeecCceEEEEEEeecc--CCceEEEEecC--Ce---eee-------cCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAF--PLSVRYWEFID--GT---LIE-------HDGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~--~~---l~~-------~~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ++.+.+.+|++|+|.|.....  ....+.|++..  ..   +..       ....++.+......   ...+|.|.+++.
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~l~~   79 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDA---GFFTVTMTDLRE   79 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTT---TEEEEEECSCCG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCC---CEEEEEEhhhCC
Confidence            345778899999999987533  23467898632  11   111       01122222222221   135799999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12803        442 SDFDTYRCISKNEV  455 (902)
Q Consensus       442 ~DsG~YtC~A~N~~  455 (902)
                      +|+|.|.|.+....
T Consensus        80 ~DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          80 EDSGHYWCRIYRPS   93 (108)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             CCCEEEEEEEecCC
Confidence            99999999887543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.48  E-value=0.00017  Score=64.38  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=52.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc--CCceEEEEecC--C--eeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF--PLSVRYWEFID--G--TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~--~--~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +...|..+.+.+|++|+|.|...+.  ....+.|++..  .  ..+.....++........   ....|+|.+++.+|+|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~---~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS---KSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCC---ceeeeEecCCcCccCE
Confidence            4456777889999999999988643  45689999742  1  112222223333222211   1356999999999999


Q ss_pred             EEEEEEEeC
Q psy12803        446 TYRCISKNE  454 (902)
Q Consensus       446 ~YtC~A~N~  454 (902)
                      .|.|.+...
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999987654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.48  E-value=8.5e-05  Score=65.87  Aligned_cols=71  Identities=24%  Similarity=0.335  Sum_probs=48.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--ccc----------cCCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PIT----------LGSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~~----------~~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|...+.....+.|||....  +..          ....+....   ....|+|.+++.+|+|.|
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATY   86 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcE
Confidence            35668899999999999987755557999984321  100          000111111   224799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1ospl1          87 FCQQYW   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeecc
Confidence            998765

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.46  E-value=0.00016  Score=64.06  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e--eee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T--LIE--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~--l~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++...  .  ++.        ....++.......     ...|+|.++
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~-----~~~L~I~~~   78 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGK-----DYTLSITSL   78 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSS-----SEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCC-----eEEeEEccc
Confidence            3445777889999999999998776666799997431  1  111        1122333332211     346999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          79 QTEDVATYFCQQYW   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             ccccCCcEEEeecc
Confidence            99999999998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.45  E-value=6.1e-05  Score=66.70  Aligned_cols=71  Identities=18%  Similarity=0.350  Sum_probs=48.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecC--CCcccc---------c-CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTS--ENKPIT---------L-GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~--~~~~~~---------~-~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|||.  +..+..         . ...+....   ...+|+|.+++.+|+|.|
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDY   86 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEE
Confidence            45668899999999999987666667999974  222110         0 00111111   123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+.+
T Consensus        87 yCa~~~   92 (106)
T d1i8ka_          87 YCLQSF   92 (106)
T ss_dssp             EEEECS
T ss_pred             eEecCc
Confidence            998755

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.45  E-value=7.8e-05  Score=66.77  Aligned_cols=72  Identities=14%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             ecCCcEEEEcCCeEEEEEecCC-CCCCceEEecCCC----ccc---c---c----------CCcccee-----ccCCcEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSEN----KPI---T---L----------GSWKDSA-----VASSTLN  349 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~----~~~---~---~----------~~~~~~~-----~~~~sL~  349 (902)
                      ..|..+.+.+|++|+|.|.+.+ .....+.|+|...    +.+   .   .          ...+...     .....|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            3566788999999999999876 3455689997421    110   0   0          0111111     1123799


Q ss_pred             EEeeeeecCceeEEeecC
Q psy12803        350 FTRINRINMGAYMCLADN  367 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N  367 (902)
                      |.+++.+|+|.|.|.+..
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=5.3e-05  Score=67.09  Aligned_cols=71  Identities=17%  Similarity=0.375  Sum_probs=48.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--ccc-------C-Cccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--ITL-------G-SWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~~-------~-~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|...+.....+.|+|....  +  +..       . ..+....   .+..|.|.+++.+|+|.|
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCc
Confidence            34568899999999999998766667999975321  1  100       0 0111111   123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1lk3l1          86 FCQQSW   91 (106)
T ss_dssp             EEEECS
T ss_pred             cccccc
Confidence            997654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.45  E-value=5.1e-05  Score=67.39  Aligned_cols=71  Identities=17%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Cccc---ccC-------Cccce---eccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPI---TLG-------SWKDS---AVASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~---~~~-------~~~~~---~~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|+|..  ..+.   ...       ..+..   ...+..|.|.+++.+|+|.|
T Consensus         7 ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   86 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEE
Confidence            456688999999999999887667779999743  2211   000       00111   11223799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1c5cl1          87 YCLQYA   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEecCc
Confidence            997755

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.44  E-value=0.00019  Score=63.99  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc-CCceEEEEecC--Ce---eee--cCC------ceEEEeecCCCceeeEeEEEEe
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFID--GT---LIE--HDG------VKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~--~~---l~~--~~~------~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ++..+..+.+.+|++|+|.|..... ....+.|++..  ..   +..  ...      .+.........   ...+|.|.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~   79 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKST---SSFNFTIT   79 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTT---TEEEEEES
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCC---CEEEEeec
Confidence            4556777889999999999987643 34568898742  21   110  000      01111111111   13569999


Q ss_pred             ccCCCCCeEEEEEEEeCCc
Q psy12803        438 NVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~G  456 (902)
                      +++.+|+|.|.|.+....+
T Consensus        80 ~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          80 ASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             SCCGGGCEEEEEEEECSBT
T ss_pred             ccccccCCCceEeCCCCCC
Confidence            9999999999998876543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.1e-05  Score=67.99  Aligned_cols=69  Identities=20%  Similarity=0.319  Sum_probs=45.4

Q ss_pred             cEEEEcCCeEEEEEecCCCC----CCceEEecCCCcccc-----------------cCC--cccee------ccCCcEEE
Q psy12803        300 PIVVREGDNVRLRCVATGHP----KPSIIWKTSENKPIT-----------------LGS--WKDSA------VASSTLNF  350 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~~~-----------------~~~--~~~~~------~~~~sL~I  350 (902)
                      .+.+.+|++|+|.|..+..+    ...+.|++.......                 ...  .+...      ..+.+|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            37789999999999976533    235889874222100                 000  11111      12347999


Q ss_pred             EeeeeecCceeEEeecCC
Q psy12803        351 TRINRINMGAYMCLADNV  368 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N~  368 (902)
                      .+++.+|+|.|.|.+.+.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~  110 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKA  110 (124)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             cccEEccCEEEEEEEEEC
Confidence            999999999999998763

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.43  E-value=0.00011  Score=65.86  Aligned_cols=78  Identities=24%  Similarity=0.324  Sum_probs=50.2

Q ss_pred             EEcCceeeeecCceEEEEEEeecc-CCceEEEEecC----Ce-e--e--ec-----------CCceEEEeecCCCceeeE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFID----GT-L--I--EH-----------DGVKYSISDVDKGSYQYI  431 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~----~~-l--~--~~-----------~~~~~~~~~~~~~s~~~~  431 (902)
                      ...|..+.+.+|++|+|.|.+.+. ....+.|++..    .. +  +  ..           ...++........   ..
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~   78 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDS---RR   78 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTS---SS
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCC---Ce
Confidence            345677889999999999998764 45578998642    11 1  0  00           1112111111111   23


Q ss_pred             eEEEEeccCCCCCeEEEEEEEe
Q psy12803        432 MQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       432 stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            4699999999999999998753

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.42  E-value=9e-05  Score=65.57  Aligned_cols=71  Identities=18%  Similarity=0.293  Sum_probs=48.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccc--cc--------CCcccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPI--TL--------GSWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~--~~--------~~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|.........+.|+|...  .+.  ..        ...+...   ....+|+|.+++.+|+|.|
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            3566889999999999998776666799998421  111  00        0011111   1223799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1a0ql1          86 YCLQYY   91 (106)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998754

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=6.3e-05  Score=67.22  Aligned_cols=73  Identities=15%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCC----CCCCceEEecCCCc-----ccc-----------cCC--cccee-----ccCCc
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATG----HPKPSIIWKTSENK-----PIT-----------LGS--WKDSA-----VASST  347 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G----~P~p~v~W~k~~~~-----~~~-----------~~~--~~~~~-----~~~~s  347 (902)
                      +..+..+.+.+|++|+|.|....    .....|.|++....     .+.           ...  .+...     ..+.+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            34566788999999999998542    23457999873221     000           000  11111     12347


Q ss_pred             EEEEeeeeecCceeEEeecC
Q psy12803        348 LNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       348 L~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |.|.+++.+|+|.|.|.+.+
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~  102 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKN  102 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC
T ss_pred             EEECCCChHHCEEEEEEEEE
Confidence            99999999999999999876

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=8.1e-05  Score=67.57  Aligned_cols=70  Identities=21%  Similarity=0.295  Sum_probs=48.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc------ccc-CC-------------cccee--ccC--CcEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP------ITL-GS-------------WKDSA--VAS--STLNF  350 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~------~~~-~~-------------~~~~~--~~~--~sL~I  350 (902)
                      .|..+.+.+|++|+|.|.+.+.....+.|+|..  ..+      +.. ..             .+...  ..+  .+|+|
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I   86 (122)
T d1nezg_           7 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTL   86 (122)
T ss_dssp             ESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEE
Confidence            467788999999999999988777789998732  211      000 00             01010  111  26999


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|+|.|.|.+.
T Consensus        87 ~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          87 NKFSKENEGYYFCSVI  102 (122)
T ss_dssp             SSCCGGGCEEEEEEEE
T ss_pred             cccccCCCEEEEeeEe
Confidence            9999999999999764

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=9.6e-05  Score=64.18  Aligned_cols=66  Identities=17%  Similarity=0.256  Sum_probs=45.8

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..|..|++|+|.|...- +...+.++|++..................+.|.+|+.+|+|.|+|....
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEECCT-TCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeCCC-CCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            45789999999999653 5567788887653221111111122346899999999999999998653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.39  E-value=7e-05  Score=66.34  Aligned_cols=71  Identities=18%  Similarity=0.317  Sum_probs=48.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccccc----------CCcccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPITL----------GSWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~~~----------~~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|+|...  .+...          ...+...   .....|+|.+++.+|+|.|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y   86 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY   86 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence            4566889999999999998876666799997421  11100          0011111   1223799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1kcvl1          87 YCGQSY   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            998754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.38  E-value=5.2e-05  Score=67.53  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=45.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCC-CCCCceEEecCC--Cccc--cc-C-------Cccceec---cCCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSE--NKPI--TL-G-------SWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~--~~~~--~~-~-------~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      .|.++.+.+|++|+|.|.... .....+.|||..  ..+.  .. .       ..+....   ....|.|.+++.+|+|.
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            345688999999999999765 334568999842  2111  00 0       0111111   12369999999999999


Q ss_pred             eEEeec
Q psy12803        361 YMCLAD  366 (902)
Q Consensus       361 YtC~A~  366 (902)
                      |.|.+.
T Consensus        84 YyCa~~   89 (110)
T d2esvd1          84 YYCIVV   89 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999763

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.38  E-value=6.1e-05  Score=66.78  Aligned_cols=71  Identities=23%  Similarity=0.387  Sum_probs=48.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc--cc--------CCcccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI--TL--------GSWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~--~~--------~~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|+|....  +.  ..        ...+...   ..+..|+|.+++.+|+|.|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence            35668899999999999987655667999985421  10  00        0011111   1123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1j1pl_          87 FCQQAN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEcCC
Confidence            997655

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.37  E-value=0.00029  Score=62.44  Aligned_cols=74  Identities=19%  Similarity=0.285  Sum_probs=49.0

Q ss_pred             CceeeeecCceEEEEEEeecc-CCceEEEEecC--Ce--ee-e-------cCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAF-PLSVRYWEFID--GT--LI-E-------HDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~--~~--l~-~-------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      |..+.+.+|++|+|.|..... ....+.|++..  ..  ++ .       ....++..  ....   ....|.|.+++.+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~---~~~~L~I~~~~~~   79 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLII--TEDR---KSSTLILPHATLR   79 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEE--CTTC---SEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeee--cccC---CeeeehhcccccC
Confidence            456889999999999987654 35568998742  21  11 1       01112222  1111   2467999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12803        443 DFDTYRCISKNE  454 (902)
Q Consensus       443 DsG~YtC~A~N~  454 (902)
                      |+|.|.|.+...
T Consensus        80 Dsa~YyCa~~~~   91 (110)
T d2esvd1          80 DTAVYYCIVVRS   91 (110)
T ss_dssp             GCEEEEEEEEES
T ss_pred             CceEEEEEEeCC
Confidence            999999988654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00017  Score=62.56  Aligned_cols=71  Identities=14%  Similarity=0.264  Sum_probs=48.5

Q ss_pred             eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+.....-.|..|++|+|.|.........+.|+|++......   .........+.|.+|+.+|+|+|+|....
T Consensus         7 ~Lsa~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~---~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2           7 FLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ---HQSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             EEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS---EEECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             EEEEeCCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceE---EcCCCcccEEEEeccccccCcEEEEEEEc
Confidence            343333346889999999998643344578899987543221   11112235799999999999999998765

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.36  E-value=0.00022  Score=63.05  Aligned_cols=78  Identities=21%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e--eee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T--LIE--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~--l~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++...  .  ++.        ....++......     ....|+|.++
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~-----~~~~L~I~~~   78 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-----TDFTLSINSV   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC-----CEEEEEEccc
Confidence            4456777889999999999998766667899987532  1  111        111233332221     1356999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          79 ETEDFGMYFCQQANS   93 (107)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcCCCEEEEEEcCCC
Confidence            999999999976543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.35  E-value=0.0003  Score=62.10  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eee-c-------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIE-H-------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~-~-------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++..  ..  ++. .       ...++......     ....|.|.++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l   78 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA-----TDFTLTISSV   78 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccC-----CeeecEEHhh
Confidence            445677788999999999999877766689999742  11  111 0       11222222111     2356999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          79 QADDDADYYCGQSY   92 (107)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             eecCCceEEEEecC
Confidence            99999999997653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.35  E-value=0.00031  Score=63.14  Aligned_cols=79  Identities=16%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--ee---c----------CCceEEEeecCCCceeeEeEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IE---H----------DGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~---~----------~~~~~~~~~~~~~s~~~~stL  434 (902)
                      +...|..+.+.+|++|+|.|...+.....+.|++..  ..+  +.   .          ...++.......    ....|
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~L   79 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASP----TLSTL   79 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSS----SEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccc----ccccc
Confidence            455677788999999999999877767789999742  211  10   0          012222222111    23569


Q ss_pred             EEeccCCCCCeEEEEEEEeC
Q psy12803        435 NISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .|.+++.+|+|.|.|.+.-.
T Consensus        80 ~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          80 TVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EECSCCGGGCEEEEEEEECS
T ss_pred             cccccccccCceEEEEEecC
Confidence            99999999999999988643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.34  E-value=0.00013  Score=65.32  Aligned_cols=71  Identities=17%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCC--cc---cccCCcc-ceecc---CCcEEEEeeeeecCceeEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSEN--KP---ITLGSWK-DSAVA---SSTLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~--~~---~~~~~~~-~~~~~---~~sL~I~~Vt~~DsG~YtC~A  365 (902)
                      .|..+.+.+|++|+|.|..++  .....+.|+|...  .+   +...... .....   ...|+|.+++.+|+|.|.|.+
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            466788999999999998865  3445689997421  11   1111111 11111   127999999999999999987


Q ss_pred             cC
Q psy12803        366 DN  367 (902)
Q Consensus       366 ~N  367 (902)
                      ..
T Consensus        86 ~~   87 (113)
T d1vesa_          86 FY   87 (113)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.9e-05  Score=66.25  Aligned_cols=67  Identities=13%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             EEEEcCCeEEEEEecCCCC----CCceEEecCCCcccccCC----------cccee--ccCCcEEEEeeeeecCceeEEe
Q psy12803        301 IVVREGDNVRLRCVATGHP----KPSIIWKTSENKPITLGS----------WKDSA--VASSTLNFTRINRINMGAYMCL  364 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~~~~~~~----------~~~~~--~~~~sL~I~~Vt~~DsG~YtC~  364 (902)
                      +++..|++|+|.|......    ...+.|.+++..+.....          .+...  ..+.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            6789999999999876422    235788886644322111          11111  2245899999999999999998


Q ss_pred             ecC
Q psy12803        365 ADN  367 (902)
Q Consensus       365 A~N  367 (902)
                      +.+
T Consensus        84 V~~   86 (105)
T d1dr9a1          84 VLK   86 (105)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            865

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.33  E-value=0.00012  Score=65.72  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=47.1

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cc--c-cc-------CCcccee-----ccCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KP--I-TL-------GSWKDSA-----VASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~--~-~~-------~~~~~~~-----~~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|.........+.|||...  .+  + ..       ...+...     .....|.|.+++.+|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            455789999999999998776677899997421  11  1 00       0011111     112369999999999999


Q ss_pred             eEEeec
Q psy12803        361 YMCLAD  366 (902)
Q Consensus       361 YtC~A~  366 (902)
                      |.|.+.
T Consensus        88 YyCa~~   93 (115)
T d1lp9e1          88 YYCALF   93 (115)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            999764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00012  Score=65.60  Aligned_cols=71  Identities=18%  Similarity=0.309  Sum_probs=47.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC-CCCceEEecCC--Cccc---c--------cCCcccee--ccC---CcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSE--NKPI---T--------LGSWKDSA--VAS---STLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~--~~~~---~--------~~~~~~~~--~~~---~sL~I~~Vt~~D  357 (902)
                      .|..+.+.+|++|+|.|...+. ....+.|+|..  ..+.   .        ....+...  ..+   .+|.|.+++.+|
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC
Confidence            4667889999999999998653 34568899842  2111   0        00111111  112   259999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+..
T Consensus        85 sg~YyCa~~~   94 (114)
T d3bp5a1          85 SGIYLCGAIS   94 (114)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            9999998754

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.33  E-value=0.00021  Score=63.27  Aligned_cols=78  Identities=19%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--eec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++..  ..+  +..        ...++......     ....|.|.++
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l   78 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG-----SDYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC-----CEEEEEEhhh
Confidence            345577788999999999999887777779999742  221  111        11112211111     1346999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          79 ESEDFADYYCLQYAS   93 (107)
T ss_dssp             CGGGCSEEEEEECSS
T ss_pred             cccCCeEEEEecCcC
Confidence            999999999977543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.32  E-value=0.00011  Score=65.83  Aligned_cols=70  Identities=23%  Similarity=0.294  Sum_probs=47.5

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc--cc-cCC--------cccee-----ccCCcEEEEeeeeecCc
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP--IT-LGS--------WKDSA-----VASSTLNFTRINRINMG  359 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~--~~-~~~--------~~~~~-----~~~~sL~I~~Vt~~DsG  359 (902)
                      +..+++.+|++|+|.|.........+.|+|..  ..+  +. ...        .+...     ...-.|+|.+++.+|+|
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence            55688999999999999876556679999842  111  10 000        01111     11236999999999999


Q ss_pred             eeEEeecC
Q psy12803        360 AYMCLADN  367 (902)
Q Consensus       360 ~YtC~A~N  367 (902)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (115)
T d1j8hd1          87 EYFCAVSE   94 (115)
T ss_dssp             EEEEEEES
T ss_pred             cceeeecC
Confidence            99998755

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.32  E-value=0.00011  Score=65.10  Aligned_cols=71  Identities=18%  Similarity=0.316  Sum_probs=48.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc----cccc-------C-Cccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK----PITL-------G-SWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~----~~~~-------~-~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.....-...+.|||....    ++..       . ..+....   ....|.|.+++.+|+|.|
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATY   85 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEE
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcE
Confidence            46678899999999999987755667999985321    1100       0 0111111   123699999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1op3k1          86 HCQHYA   91 (106)
T ss_dssp             EEEEEC
T ss_pred             eeeeCC
Confidence            997654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.32  E-value=0.00063  Score=60.51  Aligned_cols=81  Identities=19%  Similarity=0.308  Sum_probs=52.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee---eec-C-----CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL---IEH-D-----GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l---~~~-~-----~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      +...|..+.+.+|++|+|.|..... ...+.|++..  ..+   ... .     ...........   ...+.|.|.+++
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~   79 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSER---ARYSTLHIRDAQ   79 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSS---SSEEEEEECSCC
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecC---CceeEEEECCCC
Confidence            4456777889999999999998653 4568998743  211   110 1     11111111111   124579999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy12803        441 ISDFDTYRCISKNEVD  456 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G  456 (902)
                      .+|+|.|.|.+....+
T Consensus        80 ~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          80 LEDSGTYFCAAEASSG   95 (113)
T ss_dssp             GGGCEEEEEEEECSSS
T ss_pred             HhHCEEEEEEecCCCC
Confidence            9999999998876543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.30  E-value=0.00037  Score=61.53  Aligned_cols=78  Identities=19%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--ee--c-CC-----ceEEEeecCCCceeeEeEEEEeccC
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IE--H-DG-----VKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~--~-~~-----~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ...|..+.+.+|++|+|.|.....-...+.|++..  ..+  +.  . ..     .+........   ....+|.|.+++
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~   79 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKR---EKKLSLHIADSQ   79 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETG---GGEEEEEESSCC
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCC---CCeeEeEeccCC
Confidence            34566778999999999999876666679998752  111  10  0 00     1111111111   124579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12803        441 ISDFDTYRCISKN  453 (902)
Q Consensus       441 ~~DsG~YtC~A~N  453 (902)
                      .+|+|.|.|.+.-
T Consensus        80 ~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          80 PGDSATYFCAASA   92 (110)
T ss_dssp             TTSCSEEEECCEE
T ss_pred             CCCceeEeeeecC
Confidence            9999999998764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00015  Score=63.93  Aligned_cols=67  Identities=19%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             EEEEcCCeEEEEEecCCCC---CCc--eEEecCCCccccc---C---------C--cc-ceeccCCcEEEEeeeeecCce
Q psy12803        301 IVVREGDNVRLRCVATGHP---KPS--IIWKTSENKPITL---G---------S--WK-DSAVASSTLNFTRINRINMGA  360 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P---~p~--v~W~k~~~~~~~~---~---------~--~~-~~~~~~~sL~I~~Vt~~DsG~  360 (902)
                      +.+..|++|+|.|..+...   ...  +.|.++....+..   .         .  .+ .....+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            6788999999999986422   222  3454544332210   0         0  00 111344589999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |.|.+..
T Consensus        84 Y~C~V~~   90 (110)
T d1ncna_          84 YQCIIHH   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9998754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.30  E-value=0.00033  Score=61.76  Aligned_cols=77  Identities=21%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.....-...+.|++...    .++..        ...++......     ....|.|.++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~-----~~~~L~I~~~   77 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG-----TEFTLTISGL   77 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEEESC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC-----CEEEEEEccc
Confidence            3456778889999999999988766666799987531    11111        11122222111     1346999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|.+..
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          78 QFDDFATYHCQHYA   91 (106)
T ss_dssp             CGGGCSEEEEEEEC
T ss_pred             cccCCCcEeeeeCC
Confidence            99999999998764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.28  E-value=0.00012  Score=64.81  Aligned_cols=71  Identities=18%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--ccc--------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--ITL--------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|.........+.|+|....  +  +..        ...+....   ....|+|.+++.+|++.|
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Y   86 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceE
Confidence            46678899999999999988755678999984321  1  100        00111111   123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1tjgl1          87 YCQQLH   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEECc
Confidence            997654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.28  E-value=0.00049  Score=60.91  Aligned_cols=78  Identities=23%  Similarity=0.270  Sum_probs=52.1

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e--eeecC--------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T--LIEHD--------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~--l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++...  .  .+...        ...+......     ....|+|.++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~l   78 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG-----TDFTLTISSL   78 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS-----SEEEEEECSC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC-----CEEEeEeeee
Confidence            4455777889999999999998876667799986532  1  11111        1112211111     2356999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          79 EPEDFAMYICQQHNE   93 (108)
T ss_dssp             CTTCCSEEEEEECSS
T ss_pred             EeccceEEEEeeCCC
Confidence            999999999976553

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.28  E-value=0.00012  Score=64.79  Aligned_cols=70  Identities=19%  Similarity=0.305  Sum_probs=46.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc---c---------CCcccee---ccCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT---L---------GSWKDSA---VASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~---~---------~~~~~~~---~~~~sL~I~~Vt~~DsG  359 (902)
                      .|..+++.+|++|+|.|.........+.|||..  ..+..   .         .......   ....+|.|.+++.+|+|
T Consensus         5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            355688999999999999876555569999852  11110   0         0000010   11236999999999999


Q ss_pred             eeEEeec
Q psy12803        360 AYMCLAD  366 (902)
Q Consensus       360 ~YtC~A~  366 (902)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (110)
T d1u3ha1          85 TYFCAAS   91 (110)
T ss_dssp             EEEECCE
T ss_pred             eEeeeec
Confidence            9999764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.28  E-value=9.2e-05  Score=65.88  Aligned_cols=71  Identities=15%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--c-ccC-------Ccccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--I-TLG-------SWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~-~~~-------~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|||....  +  + ...       ..+...   .....|.|.+++.+|+|.|
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y   86 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY   86 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence            36678899999999999987655667999984311  1  1 000       011111   1123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCA~~~   92 (109)
T d1mqkl_          87 YCQHHY   92 (109)
T ss_dssp             EEEECS
T ss_pred             EEeeeC
Confidence            998754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.27  E-value=0.0001  Score=65.34  Aligned_cols=71  Identities=17%  Similarity=0.321  Sum_probs=47.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Cccc--cc--------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPI--TL--------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~--~~--------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.....-...+.|+|..  ..+.  ..        ...+....   .+..|+|.+++.+|++.|
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   86 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEY   86 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeE
Confidence            345578999999999999876555679999742  1111  00        00111111   123699999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1mexl1          87 FCQQYN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeECC
Confidence            997654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.27  E-value=0.00013  Score=65.26  Aligned_cols=69  Identities=17%  Similarity=0.373  Sum_probs=45.9

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecC--CCcc--cc-cC-C---------cccee---ccCCcEEEEeeeeecCc
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTS--ENKP--IT-LG-S---------WKDSA---VASSTLNFTRINRINMG  359 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~--~~~~--~~-~~-~---------~~~~~---~~~~sL~I~~Vt~~DsG  359 (902)
                      +..+.+.+|++|+|.|.........+.|+|.  +..+  +. .. .         .....   ..+..|+|.+++.+|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            3458899999999999977655667889973  2111  10 00 0         00111   12247999999999999


Q ss_pred             eeEEeec
Q psy12803        360 AYMCLAD  366 (902)
Q Consensus       360 ~YtC~A~  366 (902)
                      .|.|.+.
T Consensus        87 ~YyCa~~   93 (115)
T d1i9ea_          87 VYFCAVS   93 (115)
T ss_dssp             EEEEEEE
T ss_pred             eeccccc
Confidence            9999764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.00032  Score=61.79  Aligned_cols=74  Identities=20%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ..|..+.+.+|++|+|.|.....-...+.|++...    .++..        ...++......     ....|.|.+++.
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-----~~~~L~I~~~~~   79 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-----TDFTLTIDPVEA   79 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCG
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC-----CEEEeEECCcCh
Confidence            34556889999999999999876667899986521    11111        11222222211     135699999999


Q ss_pred             CCCeEEEEEEE
Q psy12803        442 SDFDTYRCISK  452 (902)
Q Consensus       442 ~DsG~YtC~A~  452 (902)
                      +|+|.|.|.+.
T Consensus        80 ~Dsa~YyCa~~   90 (106)
T d1lk3l1          80 DDTAIYFCQQS   90 (106)
T ss_dssp             GGCEEEEEEEC
T ss_pred             hhCCCcccccc
Confidence            99999999654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.26  E-value=0.00014  Score=64.79  Aligned_cols=69  Identities=17%  Similarity=0.285  Sum_probs=45.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCC--CCCceEEecCCCc--c--cc-cC-------Ccccee---ccCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGH--PKPSIIWKTSENK--P--IT-LG-------SWKDSA---VASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~--~--~~-~~-------~~~~~~---~~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|..++.  ....+.|+|....  +  +. ..       ..+...   ....+|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            446889999999999998653  2345999974221  1  00 00       011111   112479999999999999


Q ss_pred             eEEeec
Q psy12803        361 YMCLAD  366 (902)
Q Consensus       361 YtC~A~  366 (902)
                      |.|.+.
T Consensus        87 YyCA~~   92 (111)
T d1rzfl1          87 YYCGTW   92 (111)
T ss_dssp             EEEEEE
T ss_pred             eEEeec
Confidence            999764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.26  E-value=0.00068  Score=60.01  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eee---cC-----CceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIE---HD-----GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~---~~-----~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      +...+..+.+.+|++|+|.|.........+.|++..  ..  ++.   ..     ..++........   ...+|.|.++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~   79 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSA---KHLSLHIVPS   79 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTT---TEEEEEESSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccC---CEEEEEECCC
Confidence            344566788999999999999877766778998742  11  111   00     011222211111   2567999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        80 ~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          80 QPGDSAVYFCAAME   93 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             cccccEEEEeeccC
Confidence            99999999998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.26  E-value=0.00038  Score=61.72  Aligned_cols=76  Identities=20%  Similarity=0.299  Sum_probs=51.6

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--C--e-eeec-------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--G--T-LIEH-------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~--~-l~~~-------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++..  .  . ++..       ...++......     ....|.|.++
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~-----~~~~L~I~~~   78 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG-----TQFSLKINSL   78 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccC-----CEEEEEEccc
Confidence            445577788999999999999876666679999743  1  1 1110       11222222211     2456999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~DSa~YyCA~~   91 (109)
T d1mqkl_          79 LPEDFGSYYCQHH   91 (109)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCeeEEEeee
Confidence            9999999999875

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.25  E-value=0.00017  Score=64.38  Aligned_cols=71  Identities=14%  Similarity=0.233  Sum_probs=47.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCc----ccccCCccce--ecc---CCcEEEEeeeeecCceeEEee
Q psy12803        297 SSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENK----PITLGSWKDS--AVA---SSTLNFTRINRINMGAYMCLA  365 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~----~~~~~~~~~~--~~~---~~sL~I~~Vt~~DsG~YtC~A  365 (902)
                      .|..+++.+|++|+|.|...+  .....+.|||....    .+.....+..  ...   ..+|+|.+++.+|+|.|.|.+
T Consensus         5 ~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   84 (112)
T d1sq2n_           5 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL   84 (112)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEE
Confidence            456688999999999998765  24567999984211    1111111111  111   127999999999999999987


Q ss_pred             cC
Q psy12803        366 DN  367 (902)
Q Consensus       366 ~N  367 (902)
                      ..
T Consensus        85 ~~   86 (112)
T d1sq2n_          85 GV   86 (112)
T ss_dssp             CB
T ss_pred             ec
Confidence            54

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.24  E-value=0.00021  Score=63.36  Aligned_cols=71  Identities=20%  Similarity=0.322  Sum_probs=48.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcc--c---cc-------CCccceecc---CCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKP--I---TL-------GSWKDSAVA---SSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~--~---~~-------~~~~~~~~~---~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|.........+.|+|....-  .   ..       .........   +..|+|.+++.+|+|.|
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   86 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence            356688999999999999887556679999743211  0   00       001111111   12799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+.+
T Consensus        87 yCA~~~   92 (108)
T d1jhll_          87 ICQQHN   92 (108)
T ss_dssp             EEEECS
T ss_pred             EEeeCC
Confidence            997655

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.24  E-value=0.0001  Score=65.62  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cccc---cC-------Ccccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPIT---LG-------SWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~~---~~-------~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .+..+.+.+|++|+|.|.........+.|+|...  .+..   ..       ..+...   .....|.|.+++.+|++.|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            3445789999999999997764455799997431  1110   00       011111   1123799999999999999


Q ss_pred             EEeec
Q psy12803        362 MCLAD  366 (902)
Q Consensus       362 tC~A~  366 (902)
                      .|.+.
T Consensus        86 yCA~~   90 (109)
T d1w72l1          86 YCQVW   90 (109)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00016  Score=64.90  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCC-------CCCCceEEecCCCccc-----cc-C---------Ccccee-----ccCCcEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATG-------HPKPSIIWKTSENKPI-----TL-G---------SWKDSA-----VASSTLN  349 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G-------~P~p~v~W~k~~~~~~-----~~-~---------~~~~~~-----~~~~sL~  349 (902)
                      .+..++|.+|++|+|.|..+.       .....+.|++......     .. .         ..+...     ..+.+|.
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            456689999999999998742       1123578987542211     00 0         011111     1234799


Q ss_pred             EEeeeeecCceeEEeecC
Q psy12803        350 FTRINRINMGAYMCLADN  367 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A~N  367 (902)
                      |.+|+.+|+|.|.|.+..
T Consensus        87 I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEe
Confidence            999999999999998754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.24  E-value=9.2e-05  Score=65.63  Aligned_cols=71  Identities=14%  Similarity=0.255  Sum_probs=48.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc---cc-------CCcccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI---TL-------GSWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~---~~-------~~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|.........+.|||....  +.   ..       ...+...   ....+|.|.+++.+|+|.|
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATY   86 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcE
Confidence            35667789999999999987766667999974321  11   00       0011111   1123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d3cx5k1          87 FCQHHI   92 (107)
T ss_dssp             EEEECS
T ss_pred             EeeeCC
Confidence            997654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.23  E-value=0.00025  Score=62.95  Aligned_cols=71  Identities=20%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc------------cCCccceec---cCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT------------LGSWKDSAV---ASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~------------~~~~~~~~~---~~~sL~I~~Vt~~DsG  359 (902)
                      .+..+.+.+|++|+|.|.........+.|+|..  ..+..            ..+......   ...+|.|.+++.+|+|
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSA   85 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccE
Confidence            355678999999999999877666678999842  11110            000001111   1237999999999999


Q ss_pred             eeEEeecC
Q psy12803        360 AYMCLADN  367 (902)
Q Consensus       360 ~YtC~A~N  367 (902)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (111)
T d1bd2d1          86 VYFCAAME   93 (111)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99997753

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.21  E-value=0.00027  Score=61.62  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=45.6

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...|..|++|+|.|...- +...+.|+|++..................+.|..++..|+|+|+|....
T Consensus        14 ~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          14 GPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             CSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCcccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            346889999999998765 5567889997754322111111111223578899999999999997643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00039  Score=62.04  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCC--e---e--eec-C----------CceEEEeecCCCceeeEe
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDG--T---L--IEH-D----------GVKYSISDVDKGSYQYIM  432 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~--~---l--~~~-~----------~~~~~~~~~~~~s~~~~s  432 (902)
                      +...|..+.+.+|++|+|.|.+.... ...+.|++...  .   +  +.. .          ..++......+     ..
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~-----~~   77 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD-----TF   77 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT-----EE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC-----Ch
Confidence            45677788899999999999986543 45689987431  1   1  100 0          11222222111     34


Q ss_pred             EEEEeccCCCCCeEEEEEEEeC
Q psy12803        433 QLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       433 tL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      .|+|.+++.+|+|.|.|.+...
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             hcEEccCCCCCCEEEeEeEcCC
Confidence            6999999999999999988643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.21  E-value=0.00019  Score=63.93  Aligned_cols=72  Identities=15%  Similarity=0.297  Sum_probs=47.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCC---CCCceEEecCCCc--c--ccc-C-------Cccce---eccCCcEEEEeeeeec
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGH---PKPSIIWKTSENK--P--ITL-G-------SWKDS---AVASSTLNFTRINRIN  357 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~---P~p~v~W~k~~~~--~--~~~-~-------~~~~~---~~~~~sL~I~~Vt~~D  357 (902)
                      ..|..+.+.+|++|+|.|...+.   ....+.|+|....  +  +.. .       ..+..   ......|.|.+++.+|
T Consensus         5 tQP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           5 TQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED   84 (112)
T ss_dssp             BCCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             cCCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence            34566889999999999998763   2345899984311  1  100 0       00111   1122379999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+.+
T Consensus        85 sa~YyCa~~~   94 (112)
T d1lgva1          85 EADYYCSSYD   94 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeeec
Confidence            9999998754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.20  E-value=0.00013  Score=64.62  Aligned_cols=71  Identities=23%  Similarity=0.399  Sum_probs=48.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc--c-c------C-Ccccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI--T-L------G-SWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~--~-~------~-~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|+|....  +.  . .      . ..+...   ..+.+|.|.+++.+|+|.|
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEE
Confidence            35668899999999999987766667899974211  10  0 0      0 011111   1224799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1d5il1          87 YCLQYD   92 (107)
T ss_dssp             EEEECS
T ss_pred             Eeeecc
Confidence            997654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=65.81  Aligned_cols=71  Identities=23%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCC-CCCCceEEecCCC--cc--cc---c-C----------Cccceec---cCCcEEEEee
Q psy12803        296 FSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSEN--KP--IT---L-G----------SWKDSAV---ASSTLNFTRI  353 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~--~~--~~---~-~----------~~~~~~~---~~~sL~I~~V  353 (902)
                      ..|.++++.+|++|+|.|.+.. .....+.|+|...  .+  +.   . .          ..+....   ....|+|.++
T Consensus         5 ~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l   84 (114)
T d1akjd_           5 VSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDF   84 (114)
T ss_dssp             EECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSC
T ss_pred             ECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccC
Confidence            3566678899999999999765 3345689998431  11  10   0 0          0111111   1236999999


Q ss_pred             eeecCceeEEeec
Q psy12803        354 NRINMGAYMCLAD  366 (902)
Q Consensus       354 t~~DsG~YtC~A~  366 (902)
                      +.+|+|.|.|.+.
T Consensus        85 ~~~Dsg~YyCa~~   97 (114)
T d1akjd_          85 RRENEGYYFCSAL   97 (114)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCCEEEeEeEc
Confidence            9999999999875

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00021  Score=63.04  Aligned_cols=69  Identities=14%  Similarity=0.171  Sum_probs=44.3

Q ss_pred             CcEEEEcCCeEEEEEecCCC--CCCceEEecCCCc-----cccc-------CCccceec-----cCCcEEEEeeeeecCc
Q psy12803        299 SPIVVREGDNVRLRCVATGH--PKPSIIWKTSENK-----PITL-------GSWKDSAV-----ASSTLNFTRINRINMG  359 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~-----~~~~-------~~~~~~~~-----~~~sL~I~~Vt~~DsG  359 (902)
                      +.+.+.+|++|+|.|.....  ....+.|+|....     ++..       ...+....     ...+|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            44778999999999987642  2345789873211     0000       00111111     1127999999999999


Q ss_pred             eeEEeecC
Q psy12803        360 AYMCLADN  367 (902)
Q Consensus       360 ~YtC~A~N  367 (902)
                      .|.|.+..
T Consensus        84 ~Y~C~v~~   91 (108)
T d1hkfa_          84 HYWCRIYR   91 (108)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            99998765

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00016  Score=63.81  Aligned_cols=72  Identities=11%  Similarity=0.066  Sum_probs=45.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCC----C--CCCceEEecCCCcccc----c---------CCcccee-----ccCCcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATG----H--PKPSIIWKTSENKPIT----L---------GSWKDSA-----VASSTLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G----~--P~p~v~W~k~~~~~~~----~---------~~~~~~~-----~~~~sL~I~  351 (902)
                      ..|+.+.+.+|++|+|.|....    .  ....+.|++.......    .         ...+...     ..+.+|+|.
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK   84 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence            4566788999999999998642    1  1233567764322110    0         0111111     123479999


Q ss_pred             eeeeecCceeEEeecC
Q psy12803        352 RINRINMGAYMCLADN  367 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N  367 (902)
                      +|+.+|+|.|.|.+..
T Consensus        85 ~v~~~DsG~Y~C~v~~  100 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEI  100 (118)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCChhHCEEEEEEEEe
Confidence            9999999999998854

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.18  E-value=0.00043  Score=61.13  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--eec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.....-...+.|++..  ..+  +..        ...++......     ....|.|.++
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~-----~~~~L~I~~~   78 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG-----TDFTLTINNV   78 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC-----Ceeeeeechh
Confidence            445566788999999999999876655679999642  111  110        11223222211     1245999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|.+..
T Consensus        79 ~~~DsA~YyCa~~~   92 (107)
T d1mexl1          79 QSEDLAEYFCQQYN   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             heecceeEEEeECC
Confidence            99999999997654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.18  E-value=0.0013  Score=58.18  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eee--c-C-----CceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIE--H-D-----GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~--~-~-----~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..+..+.+.+|++|+|.|.....-...+.|++..  ..  ++.  . .     ..++........   ....|.|.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~---~~~~L~i~~~   79 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEA---TSFHLQKASV   79 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTT---TBCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCC---CEEeeeecCc
Confidence            556677788999999999998876555679998743  11  111  0 0     111222211111   1345999999


Q ss_pred             CCCCCeEEEEEEEeCC
Q psy12803        440 NISDFDTYRCISKNEV  455 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~  455 (902)
                      ..+|+|.|.|.+....
T Consensus        80 ~~~Dsa~YyCA~~~~~   95 (110)
T d1ac6a_          80 QESDSAVYYCALSGGN   95 (110)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             CcCCCcccceeecCCC
Confidence            9999999999887543

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.18  E-value=0.00015  Score=65.03  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCC-CCCCceEEecC--CCccc--c-c----------CCcccee---ccC--CcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATG-HPKPSIIWKTS--ENKPI--T-L----------GSWKDSA---VAS--STLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~--~~~~~--~-~----------~~~~~~~---~~~--~sL~I~~Vt~  355 (902)
                      .+..+++.+|++|+|.|.... .....+.|+|.  +..+.  . .          ...+...   ..+  .+|+|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            456788999999999998754 34667999873  22211  0 0          0011111   111  2699999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|.+..
T Consensus        86 ~Dsg~YyCa~~~   97 (116)
T d1tvda_          86 EDSATYYCAFTL   97 (116)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cccccceeeEec
Confidence            999999998654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00031  Score=60.44  Aligned_cols=63  Identities=11%  Similarity=0.219  Sum_probs=45.6

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      .-.|..|++|+|.|.... ....+.|+|++.......   ........+.|.+|+.+|+|+|+|...
T Consensus        12 ~~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~---~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          12 GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR---GYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE---EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCcccCCCcEEEEECCCC-CCCEEEEEECCCccceee---cCCCceeEEEecccChhcCceEEEEeE
Confidence            345889999999999765 556788999765432211   111233579999999999999999753

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.18  E-value=0.00071  Score=59.64  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e---eeec-------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T---LIEH-------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~---l~~~-------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++...  .   +...       ...++......     ....|.|.++
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~   78 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG-----QDYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC-----CEEEcccccc
Confidence            3455777889999999999998776667789986521  1   1110       11123222211     1356999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          79 EYEDMGIYYCLQYD   92 (107)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CCcCCEEEEeeecc
Confidence            99999999997654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.0002  Score=64.41  Aligned_cols=71  Identities=23%  Similarity=0.302  Sum_probs=47.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc-------------c--CCccceec-c-C--CcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT-------------L--GSWKDSAV-A-S--STLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~-------------~--~~~~~~~~-~-~--~sL~I~~Vt~  355 (902)
                      .|..+.+.+|++|+|.|...+.....+.|+|..  ..+..             .  ...+.... . .  ..|+|.+++.
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP   86 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence            455678999999999999877666789999842  11110             0  00111111 1 1  2699999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|.+..
T Consensus        87 ~Dsa~YyCa~~~   98 (118)
T d2ij0c1          87 EDSGFYVCSALA   98 (118)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccCceEEEEEec
Confidence            999999998743

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.15  E-value=0.00088  Score=60.29  Aligned_cols=80  Identities=20%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccC--CceEEEEec--CC--eeeecC--------CceEEEeecCCCceeeEeEEEE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFI--DG--TLIEHD--------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~--~~--~l~~~~--------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      .++..+..+.+.+|++++|.|.+++..  ...+.|++.  ++  .++...        ..++........   ..+.|.|
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~---~~~~L~i   79 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAK---NLAVLKI   79 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGG---TEEEEEE
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccc---cceeccc
Confidence            345566778899999999999998654  346899874  21  222111        122322221111   2467999


Q ss_pred             eccCCCCCeEEEEEEEe
Q psy12803        437 SNVNISDFDTYRCISKN  453 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N  453 (902)
                      .+++.+|+|.|.|....
T Consensus        80 ~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          80 LAPSERDEGSYYCACDT   96 (120)
T ss_dssp             SSCCGGGCEEEEEEEEC
T ss_pred             ccccccCCceeecCccc
Confidence            99999999999997654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.15  E-value=0.00055  Score=60.37  Aligned_cols=77  Identities=21%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++...    .++..        ...++......     ....|.|.++
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l   78 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG-----TEFTLTISTL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC-----CEEEEEeccc
Confidence            4556778889999999999998766667899987532    11111        11122222111     2356999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|.+.+
T Consensus        79 ~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          79 RPEDFATYYCQQLH   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             eeCcCceEEEEECc
Confidence            99999999997653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.15  E-value=0.00038  Score=61.72  Aligned_cols=71  Identities=17%  Similarity=0.317  Sum_probs=46.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-cC-------Ccccee--c---cCCcEEEEeeeeecCc
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-LG-------SWKDSA--V---ASSTLNFTRINRINMG  359 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-~~-------~~~~~~--~---~~~sL~I~~Vt~~DsG  359 (902)
                      .+..+.+.+|++|+|.|.....-...+.|+|....  +  +. ..       ..+...  .   ....|+|.+++.+|+|
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCc
Confidence            45568899999999999876644557999984311  1  10 00       011111  1   1247999999999999


Q ss_pred             eeEEeecC
Q psy12803        360 AYMCLADN  367 (902)
Q Consensus       360 ~YtC~A~N  367 (902)
                      .|.|.+..
T Consensus        86 ~YyCA~~~   93 (110)
T d1ac6a_          86 VYYCALSG   93 (110)
T ss_dssp             EEEEEEEE
T ss_pred             ccceeecC
Confidence            99997643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00075  Score=59.21  Aligned_cols=90  Identities=20%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             eeeeecCceEEEEEEeeccC---CceEE--EEecCCeeee-c-CCceEEEeecCCCcee-----eEeEEEEeccCCCCCe
Q psy12803        378 RVGVPIGRTATLECEVEAFP---LSVRY--WEFIDGTLIE-H-DGVKYSISDVDKGSYQ-----YIMQLNISNVNISDFD  445 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P---~P~v~--W~k~~~~l~~-~-~~~~~~~~~~~~~s~~-----~~stL~I~~V~~~DsG  445 (902)
                      .+.+..|++|+|.|.....+   ...+.  |.+....... . .+.............+     -..+|.|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            35678999999999886433   22334  4443332211 0 0100000000000000     0135999999999999


Q ss_pred             EEEEEEEeCC--cee---EEEEEEEee
Q psy12803        446 TYRCISKNEV--DIA---KGSLILFES  467 (902)
Q Consensus       446 ~YtC~A~N~~--G~~---~~s~~L~V~  467 (902)
                      .|.|.+....  +..   ...+.|.|.
T Consensus        83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          83 LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEcceEEEEEE
Confidence            9999986443  332   455566654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.00065  Score=60.16  Aligned_cols=78  Identities=19%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             EcCceeeeecCceEEEEEEeeccCC--ceEEEEecC--Ceee--e--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTLI--E--------HDGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l~--~--------~~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..|..+.+.+|++|+|.|.+.+...  ..+.|++..  ..+.  .        ....++........   ....|.|.++
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~l   81 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSS---NSASLTISGL   81 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTT---TEEEEEECSC
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCC---CccccccccC
Confidence            3466788999999999999876543  358998753  1111  0        01122322222221   2457999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|++.|.|.+.+.
T Consensus        82 ~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          82 KTEDEADYYCQSYDA   96 (111)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CcccCcEEEEeeccC
Confidence            999999999987654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.14  E-value=0.0012  Score=59.40  Aligned_cols=79  Identities=18%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccC--CceEEEEecC--C--e-eee--c---------CCceEEEeecCCCceeeEeE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFID--G--T-LIE--H---------DGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~--~-l~~--~---------~~~~~~~~~~~~~s~~~~st  433 (902)
                      +...+..+.+.+|++|+|.|.+.+..  ...+.|++..  .  . +..  .         ...++.+......   ....
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~---~~~~   80 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSA---STSI   80 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTT---TEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccc---cccc
Confidence            33445567788999999999986543  4568998743  1  1 111  0         1122333222221   1356


Q ss_pred             EEEeccCCCCCeEEEEEEEe
Q psy12803        434 LNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N  453 (902)
                      |.|.+++.+|++.|.|.+.-
T Consensus        81 L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          81 LTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccceeEEEEEcC
Confidence            99999999999999997643

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.13  E-value=0.0016  Score=58.10  Aligned_cols=80  Identities=16%  Similarity=0.220  Sum_probs=51.3

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeee--cCC------ceEEEeecCCCceeeEeEEEEeccC
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIE--HDG------VKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~--~~~------~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ...|..+.+.+|++|+|.|...+. ...+.|++...    .++.  ...      .++.......   .....|.|.+++
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~   79 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDA---RKDSSLHITAAQ   79 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTT---SSEEEEEESSCC
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccc---cceeeeeecCCC
Confidence            445677889999999999987654 34789987421    1110  000      1111111111   234679999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy12803        441 ISDFDTYRCISKNEVD  456 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~G  456 (902)
                      .+|+|.|.|.+....+
T Consensus        80 ~~Dsa~YyCa~~~~~~   95 (115)
T d1ogad1          80 PGDTGLYLCAGAGSQG   95 (115)
T ss_dssp             GGGCEEEEEEEECTTS
T ss_pred             ccceeeEcccccCCCC
Confidence            9999999998875433

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.13  E-value=0.00021  Score=63.75  Aligned_cols=70  Identities=19%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             CCcEEEEcCCeEEEEEecCC-CCCCceEEecCC--Cccccc-----CC--------ccceecc---CCcEEEEeeeeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATG-HPKPSIIWKTSE--NKPITL-----GS--------WKDSAVA---SSTLNFTRINRINM  358 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~--~~~~~~-----~~--------~~~~~~~---~~sL~I~~Vt~~Ds  358 (902)
                      +..+.+.+|++|+|.|.... .....+.|+|..  ..+...     ..        .......   ..+|.|.+++.+|+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS   86 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence            55678999999999998654 334568899832  221100     00        0011111   22799999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+..
T Consensus        87 g~YyCa~~~   95 (114)
T d2ak4d1          87 AVYFCALSG   95 (114)
T ss_dssp             EEEEEEEEC
T ss_pred             CCceEeCCC
Confidence            999997654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.13  E-value=0.00026  Score=63.22  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCC-CCCCceEEecCC--Cccc---cc---C-------Cccceec---cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSE--NKPI---TL---G-------SWKDSAV---ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~--~~~~---~~---~-------~~~~~~~---~~~sL~I~~Vt~~D  357 (902)
                      .+..+.+.+|++|+|.|.... .....+.|||..  ..+.   ..   .       .......   ....|.|.+++.+|
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED   84 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccc
Confidence            345688999999999998654 444568899843  1111   00   0       0001111   12369999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (115)
T d1fo0a_          85 SAVYFCAMRG   94 (115)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccccceeec
Confidence            9999998643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.13  E-value=0.00044  Score=61.63  Aligned_cols=80  Identities=20%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             EEEcCceeeeecCceEEEEEEeec-cCCceEEEEecC--Cee---eec-C-C------ceEEEeecCCCceeeEeEEEEe
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFID--GTL---IEH-D-G------VKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~--~~l---~~~-~-~------~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ++..+..+.+.+|++|+|.|.... .....+.|++..  ..+   +.. . .      .++........   ....|.|.
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~   78 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPK---SSIGLIIT   78 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGG---TEEEEEEC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccC---CEEEEEEC
Confidence            445567788999999999998754 344568998743  111   100 0 0      11222211111   23569999


Q ss_pred             ccCCCCCeEEEEEEEeC
Q psy12803        438 NVNISDFDTYRCISKNE  454 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~  454 (902)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          79 ATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCCccccccccceeecC
Confidence            99999999999988654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.12  E-value=0.00064  Score=60.10  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=51.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|...+.-...+.|++...    .++..        ...++......     ....|.|.++
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-----~~~~L~I~~l   80 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG-----TDYTFTISSL   80 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC-----CEeEEEEeec
Confidence            3445777889999999999998876666789987431    11111        11222222211     1346999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          81 QPEDIATYYCQQYQ   94 (109)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             eeCcCceEEEeecC
Confidence            99999999998654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.12  E-value=0.00094  Score=57.25  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=44.2

Q ss_pred             CceEEEEEEeeccCCceEEEEecCC----eee-e-cC-----CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803        384 GRTATLECEVEAFPLSVRYWEFIDG----TLI-E-HD-----GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK  452 (902)
Q Consensus       384 G~~v~L~C~a~g~P~P~v~W~k~~~----~l~-~-~~-----~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~  452 (902)
                      |++|+|.|.........+.|++...    .++ . ..     ..++........   ...+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~---~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKAS---QYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTT---TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCC---CEEeEEeeccccCcCccceeeEe
Confidence            7899999998877777899987431    111 1 11     111222211111   13579999999999999999886


Q ss_pred             eC
Q psy12803        453 NE  454 (902)
Q Consensus       453 N~  454 (902)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.11  E-value=0.00037  Score=61.04  Aligned_cols=74  Identities=26%  Similarity=0.371  Sum_probs=49.3

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEEEEecCC--ee--eec--------CCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL--IEH--------DGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l--~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      |..+.+.+|++|+|.|.........+.|++...  .+  ...        ...++......     ....|.|.+++.+|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l~~~D   79 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-----TTVTLTISGVQAED   79 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTCCGGG
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC-----CccCceEcCcchhH
Confidence            446788999999999988766666789986532  11  110        11122221111     23569999999999


Q ss_pred             CeEEEEEEEeC
Q psy12803        444 FDTYRCISKNE  454 (902)
Q Consensus       444 sG~YtC~A~N~  454 (902)
                      +|.|.|.+...
T Consensus        80 sa~YyCA~~~~   90 (103)
T d8faba1          80 EADYYCQAWDN   90 (103)
T ss_dssp             CEEEEEEEEET
T ss_pred             CceEEeeecCC
Confidence            99999987654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.11  E-value=0.00024  Score=62.98  Aligned_cols=71  Identities=18%  Similarity=0.321  Sum_probs=48.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-c-------CCccceec---cCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-L-------GSWKDSAV---ASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-~-------~~~~~~~~---~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|...+.....+.|+|....  +  +. .       ...+....   ....|.|.+++.+|+|.|
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Y   88 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATY   88 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceE
Confidence            35668899999999999988755567899984321  1  10 0       00111111   123699999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        89 yCA~~~   94 (109)
T d1bwwa_          89 YCQQYQ   94 (109)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            998654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00088  Score=57.62  Aligned_cols=81  Identities=17%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      ++|.+.+.    ....++.++|.|.+.++ |.. .|+|++++..+..............++++...+.|.|..   .|..
T Consensus         3 vpP~V~v~----~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~---~~~~   75 (94)
T d1de4a1           3 VPPLVKVT----HHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP---GEEQ   75 (94)
T ss_dssp             BCCEEEEE----EEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT---TCGG
T ss_pred             CCCEEEEE----EcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC---CCCC
Confidence            35666542    12346778999999985 644 899998887764332222223345666777777777754   4556


Q ss_pred             EEEEEEEeCC
Q psy12803        446 TYRCISKNEV  455 (902)
Q Consensus       446 ~YtC~A~N~~  455 (902)
                      .|+|.+....
T Consensus        76 ~ytC~V~H~s   85 (94)
T d1de4a1          76 RYTCQVEHPG   85 (94)
T ss_dssp             GEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            8999998763

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00023  Score=63.30  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=44.6

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCC---CceEEecCC--Ccccc---cC-------Cccce---eccCCcEEEEeeeeecCc
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPK---PSIIWKTSE--NKPIT---LG-------SWKDS---AVASSTLNFTRINRINMG  359 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~---p~v~W~k~~--~~~~~---~~-------~~~~~---~~~~~sL~I~~Vt~~DsG  359 (902)
                      +..+.+.+|++|+|.|..++...   -.+.|+|..  ..+..   ..       ..+..   ...+..|.|.+++.+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            44578999999999999875332   238899742  11110   00       01111   112247999999999999


Q ss_pred             eeEEeec
Q psy12803        360 AYMCLAD  366 (902)
Q Consensus       360 ~YtC~A~  366 (902)
                      .|.|.+.
T Consensus        87 ~YyCa~~   93 (110)
T d1oaql_          87 IYFCALW   93 (110)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEcc
Confidence            9999754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.10  E-value=0.0002  Score=63.38  Aligned_cols=71  Identities=20%  Similarity=0.386  Sum_probs=46.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCCc--c--cccC--------Cccceec---cCCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSENK--P--ITLG--------SWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~--~--~~~~--------~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      .|..+.+.+|++|+|.|..... ....+.|+|....  +  +...        ..+....   ....|.|.+++.+|+|.
T Consensus         7 ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~   86 (108)
T d2fx7l1           7 SPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAV   86 (108)
T ss_dssp             SSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             eCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEE
Confidence            3556889999999999997653 3456889985322  1  1000        0011111   12369999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |.|.+.+
T Consensus        87 YyCa~~~   93 (108)
T d2fx7l1          87 YYCQQYG   93 (108)
T ss_dssp             EEEEECS
T ss_pred             EeeecCC
Confidence            9998754

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.09  E-value=0.00025  Score=63.52  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=45.7

Q ss_pred             CCcEEEEcCCeEEEEEecCCC--CCCceEEecCCCcc----cc-cC-------Ccccee---ccCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGH--PKPSIIWKTSENKP----IT-LG-------SWKDSA---VASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~~----~~-~~-------~~~~~~---~~~~sL~I~~Vt~~DsG~  360 (902)
                      +..+.+.+|++|+|.|.+.+.  ....+.|+|....-    +. ..       ..+...   ..+..|.|.+++.+|++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            345789999999999998763  34578999753221    00 00       001111   112379999999999999


Q ss_pred             eEEeec
Q psy12803        361 YMCLAD  366 (902)
Q Consensus       361 YtC~A~  366 (902)
                      |.|.+.
T Consensus        87 YyCA~~   92 (114)
T d2rhea_          87 YYCAAW   92 (114)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            999764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.09  E-value=0.00019  Score=63.86  Aligned_cols=71  Identities=20%  Similarity=0.238  Sum_probs=46.7

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC-CCceEEecCC--Cccc--cc--------CCccceecc---CCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSE--NKPI--TL--------GSWKDSAVA---SSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~--~~~~--~~--------~~~~~~~~~---~~sL~I~~Vt~~DsG~  360 (902)
                      .|..+.+.+|++|+|.|...+.. ...+.|+|..  ..+.  ..        ...+.....   ...|+|.+++.+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            45668899999999999987533 3458999842  2111  00        001111111   1269999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9997643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.08  E-value=0.00033  Score=61.84  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--eecC--------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IEHD--------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.........+.|++..  ..+  +...        ..++.....     ....+|.|.++
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~-----~~~~~L~I~~~   78 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGS-----GTDYSLTISNL   78 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEE-----TTEEEEECSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEcc-----CCEEEEEEeEe
Confidence            445577788999999999999877776779998653  211  1100        111111111     11356999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          79 EPEDIATYFCQHH   91 (107)
T ss_dssp             CSCCCSEEEEEEC
T ss_pred             eecCCCcEEeeeC
Confidence            9999999999764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00065  Score=60.29  Aligned_cols=74  Identities=15%  Similarity=0.364  Sum_probs=46.8

Q ss_pred             eeeeecCceEEEEEEeecc--CCceEEEEecCC----eeee-cC----------CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        378 RVGVPIGRTATLECEVEAF--PLSVRYWEFIDG----TLIE-HD----------GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~----~l~~-~~----------~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ...+.+|++|+|.|...+.  ....+.|++...    .++. ..          ..++.+......   ...+|+|.+++
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~Lti~~l~   84 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH---GLLRVRMVNLQ   84 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTT---TEEEEEECSCC
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCC---CEEEEEEccCC
Confidence            4567899999999988643  445788987422    1111 00          012333222211   13569999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12803        441 ISDFDTYRCISKNE  454 (902)
Q Consensus       441 ~~DsG~YtC~A~N~  454 (902)
                      .+|+|.|.|.+...
T Consensus        85 ~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          85 VEDSGLYQCVIYQP   98 (113)
T ss_dssp             GGGCEEEEEEECCT
T ss_pred             cccCceEEEEEECC
Confidence            99999999987543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.07  E-value=0.00092  Score=59.27  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             cCceeeeecCceEEEEEEeeccC-CceEEEEecC--Cee--ee-c-----CCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFP-LSVRYWEFID--GTL--IE-H-----DGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~--~~l--~~-~-----~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .|..+.+.+|++|+|.|...+.. ...+.|++..  ..+  +. .     .....+.....+.   ....|.|.+++.+|
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR---KSSTLILHRATLRD   80 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTS---SEEEEEESSCCGGG
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccC---CeeEEEEeeccccc
Confidence            45678899999999999987554 3468999742  211  11 0     1111122222222   24569999999999


Q ss_pred             CeEEEEEEEe
Q psy12803        444 FDTYRCISKN  453 (902)
Q Consensus       444 sG~YtC~A~N  453 (902)
                      +|.|.|.+..
T Consensus        81 sa~YyCa~~~   90 (112)
T d1kgcd1          81 AAVYYCILPL   90 (112)
T ss_dssp             CEEEEEECCC
T ss_pred             ceeEeeeEec
Confidence            9999997754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.05  E-value=0.00037  Score=61.86  Aligned_cols=72  Identities=17%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cccc---------c-CCccc--eec---cCCcEEEEeeeee
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPIT---------L-GSWKD--SAV---ASSTLNFTRINRI  356 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~~---------~-~~~~~--~~~---~~~sL~I~~Vt~~  356 (902)
                      ..|..+++.+|++|+|.|..++..  ...+.|+|...  .+..         . ...+.  ...   ....|.|.+++.+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            345568899999999999987633  23489998431  1110         0 00111  111   1237999999999


Q ss_pred             cCceeEEeecC
Q psy12803        357 NMGAYMCLADN  367 (902)
Q Consensus       357 DsG~YtC~A~N  367 (902)
                      |++.|.|.+.+
T Consensus        85 Dsa~YyCA~~~   95 (111)
T d1cd0a_          85 DEADYYCQSYD   95 (111)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeecc
Confidence            99999997543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.03  E-value=0.00051  Score=61.88  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeecC--------CceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEHD--------GVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~~--------~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ..|..+.+.+|++|+|.|.....-...+.|++...    .++...        ..++.....     .....|.|.+++.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~-----~~~~~L~I~~~~~   80 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-----GTDYTLTISSLQP   80 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----BTEEEEEECSCCG
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCC-----CCEEEEEcccCcc
Confidence            34667789999999999988766556799997532    111111        112222111     1235699999999


Q ss_pred             CCCeEEEEEEEe
Q psy12803        442 SDFDTYRCISKN  453 (902)
Q Consensus       442 ~DsG~YtC~A~N  453 (902)
                      +|+|.|.|.+..
T Consensus        81 ~DsavYyCa~~~   92 (119)
T d1f3rb2          81 EDVATYFCYQYN   92 (119)
T ss_dssp             GGCSEEEEEEES
T ss_pred             CCCeEEEeeccC
Confidence            999999997654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.03  E-value=0.00035  Score=62.28  Aligned_cols=70  Identities=30%  Similarity=0.452  Sum_probs=46.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccccc---cCC-------cc-cee---ccCCcEEEEeeeeecCce
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPIT---LGS-------WK-DSA---VASSTLNFTRINRINMGA  360 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~~---~~~-------~~-~~~---~~~~sL~I~~Vt~~DsG~  360 (902)
                      .|..+++.+|++|+|.|..+.. ...+.|||..  ..+..   ...       .. ...   ....+|+|.+++.+|+|.
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence            4567889999999999998763 4569999843  21110   000       00 000   112369999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (113)
T d1h5ba_          86 YFCAAEA   92 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9998754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.03  E-value=0.00016  Score=64.09  Aligned_cols=70  Identities=21%  Similarity=0.388  Sum_probs=46.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc--cc-cCC-------cccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP--IT-LGS-------WKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~--~~-~~~-------~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+.+.+|++|+|.|.........+.|+|..  ..+  +. ...       .+...   ..+..|.|.+++.+|+|.|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            455688999999999998865444568999843  111  10 000       01111   1123799999999999999


Q ss_pred             EEeec
Q psy12803        362 MCLAD  366 (902)
Q Consensus       362 tC~A~  366 (902)
                      .|.+.
T Consensus        85 yCA~~   89 (108)
T d1nfde1          85 YCLSS   89 (108)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.03  E-value=0.00044  Score=61.83  Aligned_cols=69  Identities=20%  Similarity=0.392  Sum_probs=46.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-c---------CCccceec---cCCcEEEEeeeeecCce
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-L---------GSWKDSAV---ASSTLNFTRINRINMGA  360 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-~---------~~~~~~~~---~~~sL~I~~Vt~~DsG~  360 (902)
                      |..+++.+|++|+|.|..++. ...+.|||....  +  +. .         ........   ...+|+|.+++.+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            556889999999999998763 347999984311  1  00 0         00001111   12379999999999999


Q ss_pred             eEEeecC
Q psy12803        361 YMCLADN  367 (902)
Q Consensus       361 YtC~A~N  367 (902)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (115)
T d1ogad1          86 YLCAGAG   92 (115)
T ss_dssp             EEEEEEC
T ss_pred             EcccccC
Confidence            9997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0012  Score=57.75  Aligned_cols=75  Identities=20%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ++..|..+.+.+|++|+|.|.... ....+.|++...    .++..        ...++......     ...+|.|.++
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~L~I~~~   76 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG-----TSYSLTISSM   76 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCC-----CEEEEEeccc
Confidence            455677888999999999998654 344689987531    11110        01112221111     1356999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|+|.|.|.+.
T Consensus        77 ~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          77 ETEDAATYYCQQW   89 (104)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCCeEEEEec
Confidence            9999999999654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00081  Score=58.65  Aligned_cols=91  Identities=15%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+........+.++|.|.+.++ |. ..|.|++++..+.. ...........++.|...+.|.|..-.......
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~-~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA-GMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT-TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCC-CeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            4555543322222245678999999887 53 37999887765432 111111223456778888999998766556679


Q ss_pred             EEEEEEeCCceeEE
Q psy12803        447 YRCISKNEVDIAKG  460 (902)
Q Consensus       447 YtC~A~N~~G~~~~  460 (902)
                      |+|.|.......+.
T Consensus        84 ytC~V~H~~~~~~k   97 (102)
T d1q0xl2          84 YSCQVTHEGHSSNK   97 (102)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEEECCccEee
Confidence            99999987544433

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.00  E-value=0.0011  Score=58.44  Aligned_cols=82  Identities=21%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e---eeec--CCceEEEeecCCC-----ceeeEeEEEEec
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T---LIEH--DGVKYSISDVDKG-----SYQYIMQLNISN  438 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~---l~~~--~~~~~~~~~~~~~-----s~~~~stL~I~~  438 (902)
                      .+...|..+.+.+|++|+|.|.... ....+.|++...  .   +...  .+.... ......     .....+.|+|.+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~   80 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEK-GDIPDGYEASRPSQEQFSLILES   80 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEE-CSCCTTCEEEEEETTEEEEEESS
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCccc-CCCCCCEEEEeccCCEEEEEECC
Confidence            3455677788999999999998764 346799997432  1   1110  010000 000000     001245699999


Q ss_pred             cCCCCCeEEEEEEEeC
Q psy12803        439 VNISDFDTYRCISKNE  454 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~  454 (902)
                      ++.+|+|.|.|.+...
T Consensus        81 ~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          81 ATPSQTSVYFCASGGG   96 (110)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCHhhCEEEEEeeCCC
Confidence            9999999999987653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.00  E-value=0.00081  Score=59.27  Aligned_cols=77  Identities=21%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc-CCceEEEEecC--Ce--eeec--------CCceEEEeecCCCceeeEeEEEEec
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFID--GT--LIEH--------DGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~--~~--l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ++..|..+.+.+|++|+|.|.+... ....+.|++..  ..  ++..        ...++......     ....|.|.+
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~-----~~~~L~I~~   78 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG-----TDFTLTISR   78 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEESS
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC-----CEEEEEehH
Confidence            3455777889999999999987654 34578998753  11  1110        11122222111     135699999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|+|.|.|.+.+
T Consensus        79 ~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          79 LEPEDFAVYYCQQYG   93 (108)
T ss_dssp             CCGGGCSEEEEEECS
T ss_pred             heecccEEEeeecCC
Confidence            999999999997753

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.00  E-value=0.00035  Score=60.08  Aligned_cols=62  Identities=19%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             CCeEEEEEecCCCCCCceEEecCCCc--c--c-ccCC------cccee--cc---CCcEEEEeeeeecCceeEEeecC
Q psy12803        306 GDNVRLRCVATGHPKPSIIWKTSENK--P--I-TLGS------WKDSA--VA---SSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       306 Ge~v~L~C~a~G~P~p~v~W~k~~~~--~--~-~~~~------~~~~~--~~---~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      |++|+|.|.........+.|+|....  +  + ....      .+...  ..   ..+|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            78999999988766778999983321  1  1 0000      11111  11   13799999999999999998754

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.98  E-value=0.0012  Score=58.97  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CceeeeecCceEEEEEEeeccC--CceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      +..+.+.+|++|+|.|.+.+.-  ...+.|++...    .++..        ...++......     ....|.|.+++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~   81 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG-----TSASLAISGLES   81 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEESSCCG
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC-----CeeeeEecccCc
Confidence            3457889999999999987653  45789986532    11110        01122222111     135699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12803        442 SDFDTYRCISKNE  454 (902)
Q Consensus       442 ~DsG~YtC~A~N~  454 (902)
                      +|++.|.|.+...
T Consensus        82 ~DsA~YyCA~~~~   94 (114)
T d2rhea_          82 EDEADYYCAAWND   94 (114)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCceEEEeecCC
Confidence            9999999988643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00063  Score=60.89  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=47.1

Q ss_pred             CceeeeecCceEEEEEEeeccC-------CceEEEEecCCeee------ecC---------CceEEEeecCCCceeeEeE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP-------LSVRYWEFIDGTLI------EHD---------GVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P-------~P~v~W~k~~~~l~------~~~---------~~~~~~~~~~~~s~~~~st  433 (902)
                      +..+.+.+|++|+|.|......       ...+.|++......      ...         ..++.+.....   ....+
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~s   84 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQ---TKNCT   84 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGG---GTBCC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCc---CCEEE
Confidence            5568899999999999885221       12577886532211      000         11223222111   11345


Q ss_pred             EEEeccCCCCCeEEEEEEEeCC
Q psy12803        434 LNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      |.|.+|+.+|+|.|.|.+...-
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCChHHCEEEEEEEEeCC
Confidence            9999999999999999997643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.97  E-value=0.00045  Score=61.35  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=45.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC----CCCceEEecCC--Cccc--c-c-------CCccceec---cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH----PKPSIIWKTSE--NKPI--T-L-------GSWKDSAV---ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~----P~p~v~W~k~~--~~~~--~-~-------~~~~~~~~---~~~sL~I~~Vt~~D  357 (902)
                      .|..+.+.+|++|+|.|.....    -...+.|+|..  ..+.  . .       ...+....   .+..|.|.+++.+|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   86 (111)
T d1j05a_           7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (111)
T ss_dssp             ECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccccc
Confidence            3556788999999999987532    23348999842  2111  0 0       00111111   12379999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+.+
T Consensus        87 sa~YyCa~~~   96 (111)
T d1j05a_          87 VATYYCQQTN   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CccEEEeecC
Confidence            9999998765

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.95  E-value=0.0016  Score=57.82  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc------CCceEEEEecCC--e--eeec--------CCceEEEeecCCCceeeEeE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF------PLSVRYWEFIDG--T--LIEH--------DGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~------P~P~v~W~k~~~--~--l~~~--------~~~~~~~~~~~~~s~~~~st  433 (902)
                      ++..|..+.+.+|++|+|.|.+.+.      ....+.|++...  .  ++..        ...++......     ....
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~-----~~~~   78 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG-----TDFT   78 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCC-----CeEe
Confidence            4455777889999999999987642      224589987521  1  1111        11122222111     1346


Q ss_pred             EEEeccCCCCCeEEEEEEEe
Q psy12803        434 LNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N  453 (902)
                      |.|.+++.+|+|.|.|.+.+
T Consensus        79 L~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          79 LTITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EEESSCCGGGCEEEEEEECS
T ss_pred             EEecccccCCCeEEEecccC
Confidence            99999999999999997643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00027  Score=62.26  Aligned_cols=88  Identities=14%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.......++.++|.|.+.++ |. ..|.|++++..+..............++.|...+.|.|..-.......
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            4555443322333456789999999885 53 589998877655322111111233566778888899997765555568


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|.|.....
T Consensus        84 ytC~V~H~~l   93 (105)
T d1fp5a2          84 FICRAVHEAA   93 (105)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEECCC
Confidence            9999987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.95  E-value=0.00035  Score=62.11  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=45.8

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC----CCCceEEecCC--Cccc---ccC-------Cccceec---cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH----PKPSIIWKTSE--NKPI---TLG-------SWKDSAV---ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~----P~p~v~W~k~~--~~~~---~~~-------~~~~~~~---~~~sL~I~~Vt~~D  357 (902)
                      .|..+.+.+|++|+|.|.++..    ....+.|+|..  ..+.   ...       ..+....   ....|+|.+++.+|
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            3566889999999999987542    22348999853  2111   000       0111111   12379999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      ++.|.|.+..
T Consensus        87 sA~YyCa~~~   96 (111)
T d2gsia1          87 AATYYCSHIR   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEECC
Confidence            9999997654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.94  E-value=0.00036  Score=61.80  Aligned_cols=69  Identities=16%  Similarity=0.223  Sum_probs=46.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cc---cccC---C-------ccce----eccCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KP---ITLG---S-------WKDS----AVASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~---~~~~---~-------~~~~----~~~~~sL~I~~Vt~~D  357 (902)
                      .|..+.+.+|++|+|.|..++ ....+.|||...  .+   +...   .       .+..    ......|+|.+++.+|
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            466788999999999999765 345799998432  11   1000   0       0111    1122479999999999


Q ss_pred             CceeEEeec
Q psy12803        358 MGAYMCLAD  366 (902)
Q Consensus       358 sG~YtC~A~  366 (902)
                      +|.|.|.+.
T Consensus        86 sa~YyCa~~   94 (110)
T d2aq2a1          86 TSVYFCASG   94 (110)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEeeC
Confidence            999999764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=96.93  E-value=0.001  Score=57.95  Aligned_cols=82  Identities=24%  Similarity=0.288  Sum_probs=56.0

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceE-EEeecCCCceeeEeEEEEeccCCCCC
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKY-SISDVDKGSYQYIMQLNISNVNISDF  444 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~-~~~~~~~~s~~~~stL~I~~V~~~Ds  444 (902)
                      .+|.+.+.+.. .+..|+.++|.|.+.++ | ...|+|++++..+..  +... ......+++|...+.|.+..   ++.
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~--~~~~t~~~~~~dgtf~~~s~l~v~~---~~~   75 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVAD--GVYETSFFVNRDYSFHKLSYLTFIP---SDD   75 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCS--SEEECCCEECTTSCEEEEEEEEECC---CTT
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccC--CceeeeeEECCCCCEEEEEEeEEcC---CCC
Confidence            46777765433 35678899999999987 4 458999988876632  1111 12335566787788887753   556


Q ss_pred             eEEEEEEEeCC
Q psy12803        445 DTYRCISKNEV  455 (902)
Q Consensus       445 G~YtC~A~N~~  455 (902)
                      ..|+|++....
T Consensus        76 ~~ytC~V~H~s   86 (100)
T d1muja1          76 DIYDCKVEHWG   86 (100)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEEECC
Confidence            68999998754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00033  Score=61.94  Aligned_cols=64  Identities=17%  Similarity=0.262  Sum_probs=40.6

Q ss_pred             EEcCCeEEEEEecCC-CCCC--ceEEecCCCcccccCCcccee-----ccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803        303 VREGDNVRLRCVATG-HPKP--SIIWKTSENKPITLGSWKDSA-----VASSTLNFTRINRINMG-AYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P~p--~v~W~k~~~~~~~~~~~~~~~-----~~~~sL~I~~Vt~~DsG-~YtC~A~N  367 (902)
                      +.+|+.++|.|.+.+ +|.+  +|.|++++..+..........     ...+.|++. ++++|.| .|+|+|+|
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~   85 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKL   85 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEc
Confidence            679999999999986 7754  688999765543222111111     111245554 4555555 79999987

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.91  E-value=5.9e-05  Score=65.56  Aligned_cols=66  Identities=20%  Similarity=0.363  Sum_probs=43.4

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCC--Cccc--c--------cCCcccee-----ccCCcEEEEeeeeecCceeE
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKPI--T--------LGSWKDSA-----VASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~~--~--------~~~~~~~~-----~~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      .++|.+|++|+|.|..+. ....+.|+|..  ..+.  .        ....+...     ....+|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            356889999999999875 34579999832  2111  0        00011111     11236999999999999999


Q ss_pred             Eeec
Q psy12803        363 CLAD  366 (902)
Q Consensus       363 C~A~  366 (902)
                      |.+.
T Consensus        81 CA~~   84 (96)
T d1ymmd1          81 CATD   84 (96)
T ss_dssp             EEEE
T ss_pred             EeEe
Confidence            9764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.90  E-value=0.0007  Score=60.17  Aligned_cols=69  Identities=22%  Similarity=0.447  Sum_probs=44.5

Q ss_pred             CCcEEEEcCCeEEEEEecCCC-----CCCceEEecCCC--ccc---cc------C-Cccceec---cCCcEEEEeeeeec
Q psy12803        298 SSPIVVREGDNVRLRCVATGH-----PKPSIIWKTSEN--KPI---TL------G-SWKDSAV---ASSTLNFTRINRIN  357 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~-----P~p~v~W~k~~~--~~~---~~------~-~~~~~~~---~~~sL~I~~Vt~~D  357 (902)
                      +..+.+.+|++|+|.|.+++.     ....+.|+|...  .+.   -.      . ..+....   ....|.|.+++.+|
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~D   87 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAED   87 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccC
Confidence            456889999999999987652     245689987431  111   00      0 0111111   11369999999999


Q ss_pred             CceeEEeec
Q psy12803        358 MGAYMCLAD  366 (902)
Q Consensus       358 sG~YtC~A~  366 (902)
                      ++.|.|...
T Consensus        88 sAvYyCa~~   96 (112)
T d1mjul1          88 VGVYYCLQH   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CceEEEEeC
Confidence            999999543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.89  E-value=0.0016  Score=57.81  Aligned_cols=77  Identities=23%  Similarity=0.305  Sum_probs=48.8

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e--eee--cC---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T--LIE--HD---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~--l~~--~~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      +..|..+.+.+|++|+|.|... .....+.|++...  .  ++.  ..         ..++.......    ..+.|.|.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~   77 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKK----ESFPLTVT   77 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSST----TBCCEEEC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccC----CeEEEEEC
Confidence            3446678899999999999975 3456799996532  1  110  00         01111111111    13459999


Q ss_pred             ccCCCCCeEEEEEEEeC
Q psy12803        438 NVNISDFDTYRCISKNE  454 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~  454 (902)
                      +++.+|+|.|.|.+...
T Consensus        78 ~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          78 SAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             SCCSCCCEEEEEEEESS
T ss_pred             cCCcCCceeEEEeeccC
Confidence            99999999999977643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.89  E-value=0.00048  Score=61.16  Aligned_cols=69  Identities=29%  Similarity=0.460  Sum_probs=45.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCC--Ccc--cc------------cCCccceec----cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSE--NKP--IT------------LGSWKDSAV----ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~~--~~------------~~~~~~~~~----~~~sL~I~~Vt~~  356 (902)
                      .|..+++.+|++|+|.|.... ....+.|+|..  ..+  +.            ....+....    ...+|+|.+++.+
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           5 SPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            355678999999999998654 34579999842  111  00            000111111    1236999999999


Q ss_pred             cCceeEEeec
Q psy12803        357 NMGAYMCLAD  366 (902)
Q Consensus       357 DsG~YtC~A~  366 (902)
                      |+|.|.|.+.
T Consensus        84 Dsa~YyCa~~   93 (112)
T d1kgce1          84 DSAVYLCASS   93 (112)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEEeee
Confidence            9999999874

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.89  E-value=0.0011  Score=58.81  Aligned_cols=78  Identities=23%  Similarity=0.339  Sum_probs=49.7

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc----CCceEEEEecC--Ce--eee-c-------CCceEEEeecCCCceeeEeEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF----PLSVRYWEFID--GT--LIE-H-------DGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~----P~P~v~W~k~~--~~--l~~-~-------~~~~~~~~~~~~~s~~~~stL~  435 (902)
                      ++..|..+.+.+|++|+|.|.+...    -...+.|++..  ..  ++. .       ...++.....     .....|.
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~-----~~~~~L~   78 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-----RTDFTLI   78 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS-----SSEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecC-----CCEEEEE
Confidence            3455777889999999999987532    23348998752  21  111 0       1112222211     1245799


Q ss_pred             EeccCCCCCeEEEEEEEeC
Q psy12803        436 ISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~  454 (902)
                      |.+++.+|+|.|.|.+.+.
T Consensus        79 I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          79 IDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             EcccccccCccEEEeecCC
Confidence            9999999999999977543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.89  E-value=0.00044  Score=61.33  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cccc------------c--CCccceec----cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPIT------------L--GSWKDSAV----ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~~------------~--~~~~~~~~----~~~sL~I~~Vt~~  356 (902)
                      .|..+++.+|++|+|.|...+ ....+.|||...  .+..            .  ...+....    ....|+|.+++.+
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           5 FPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE   83 (111)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred             CCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence            356688999999999998665 345799997531  1110            0  00111111    1137999999999


Q ss_pred             cCceeEEeec
Q psy12803        357 NMGAYMCLAD  366 (902)
Q Consensus       357 DsG~YtC~A~  366 (902)
                      |+|.|.|.+.
T Consensus        84 Dsa~YyCa~~   93 (111)
T d2esve1          84 DSGVYFCASS   93 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCceEEEeee
Confidence            9999999754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.88  E-value=0.0026  Score=56.29  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=49.5

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--e-ec--C--------CceEEEeecCCCceeeEeEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--I-EH--D--------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~-~~--~--------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +...|..+.+.+|++|+|.|.... -...+.|++..  ..+  + ..  .        ..++.......    ....|.|
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~i   77 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKK----ERFSLIL   77 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSST----TBCEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccC----cEeeeEe
Confidence            455677788999999999998643 34578998743  111  1 00  0        01111111111    1246999


Q ss_pred             eccCCCCCeEEEEEEEeC
Q psy12803        437 SNVNISDFDTYRCISKNE  454 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~  454 (902)
                      .+++.+|+|.|.|.+...
T Consensus        78 ~~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          78 ESASTNQTSMYLCASSST   95 (113)
T ss_dssp             SSCCGGGCEEEEEEEECT
T ss_pred             ccCccCCcccEEeeEccC
Confidence            999999999999988643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.88  E-value=0.00049  Score=62.07  Aligned_cols=73  Identities=22%  Similarity=0.298  Sum_probs=47.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc--ccc-------C-Cccce--ec---cCCcEEEEeeee
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP--ITL-------G-SWKDS--AV---ASSTLNFTRINR  355 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~--~~~-------~-~~~~~--~~---~~~sL~I~~Vt~  355 (902)
                      +..+..+.+.+|++|+|.|...+..  ...+.|+|..  +.+  +..       . ..+..  ..   ....|.|.+++.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence            3355668899999999999988643  3458999832  211  110       0 01111  11   123799999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|....
T Consensus        85 ~Dsa~YyCA~~~   96 (120)
T d1hxma1          85 RDEGSYYCACDT   96 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCCceeecCccc
Confidence            999999997644

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.88  E-value=0.0032  Score=56.78  Aligned_cols=78  Identities=23%  Similarity=0.333  Sum_probs=50.4

Q ss_pred             EEcCceeeeecCceEEEEEEeeccC--CceEEEEecC--Ce---eee--c----------CCceEEEeecCCCceeeEeE
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFP--LSVRYWEFID--GT---LIE--H----------DGVKYSISDVDKGSYQYIMQ  433 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~~---l~~--~----------~~~~~~~~~~~~~s~~~~st  433 (902)
                      ...+..+.+.+|++|+|.|.+++..  ...+.|++..  ..   +..  .          ...++.+......   ....
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~---~~~~   81 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPET---STST   81 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTT---TEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccc---ccee
Confidence            3344567788999999999998764  4468998742  11   110  0          0123333322221   1356


Q ss_pred             EEEeccCCCCCeEEEEEEEe
Q psy12803        434 LNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       434 L~I~~V~~~DsG~YtC~A~N  453 (902)
                      |.|.+++.+|++.|.|.+..
T Consensus        82 L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          82 LTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccccccCcEEEEeeeC
Confidence            99999999999999998754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.88  E-value=0.0017  Score=57.55  Aligned_cols=75  Identities=19%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEec--CCeee--e--cC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI--DGTLI--E--HD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~--~~~l~--~--~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ..|..+.+.+|++|+|.|..... ...+.|++.  +..+.  .  ..         ..++.......    ....|+|.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~   78 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSN----SRSEMNVST   78 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTT----SCEEEEECS
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcC----CeeEEEECC
Confidence            34666789999999999987543 357899973  32221  1  00         11111111111    134699999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|+|.|.|.+..
T Consensus        79 ~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          79 LELGDSALYLCASSL   93 (113)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             CCcccceeeeeeeeC
Confidence            999999999998764

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.88  E-value=0.0011  Score=58.87  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             cCceeeeecCceEEEEEEeeccC---CceEEEEecC--Ce--eeec--------CCceEEEeecCCCceeeEeEEEEecc
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFP---LSVRYWEFID--GT--LIEH--------DGVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P---~P~v~W~k~~--~~--l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      .|..+.+.+|++|+|.|...+..   ...+.|++..  ..  .+..        ...++......     ....|.|.++
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l   80 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG-----NSASLTISGL   80 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEECSC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC-----CEeeEEeCcC
Confidence            35678899999999999987542   3468999743  11  1110        11122222211     1456999999


Q ss_pred             CCCCCeEEEEEEEeCC
Q psy12803        440 NISDFDTYRCISKNEV  455 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~  455 (902)
                      +.+|+|.|.|.+.+..
T Consensus        81 ~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          81 QAEDEADYYCSSYDGS   96 (112)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             ccccCEEEEEeeecCC
Confidence            9999999999886543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.0016  Score=57.59  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCC---ceEEEEecC--Cee--ee-c-------CCceEEEeecCCCceeeEeEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFID--GTL--IE-H-------DGVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~--~~l--~~-~-------~~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      ++.. ..+.+.+|++|+|.|..++...   -.+.|++..  ..+  +. .       ...++......     ..+.|.|
T Consensus         4 ~tQ~-~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~-----~~~~L~I   77 (110)
T d1oaql_           4 VTQE-SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-----NKAALTI   77 (110)
T ss_dssp             EEEC-SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-----TEEEEEE
T ss_pred             EeeC-CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc-----cceeeec
Confidence            3443 3578999999999999975432   238898632  222  11 1       11223332221     1356999


Q ss_pred             eccCCCCCeEEEEEEEeC
Q psy12803        437 SNVNISDFDTYRCISKNE  454 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~  454 (902)
                      .+++.+|+|.|.|.+...
T Consensus        78 ~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          78 TGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             ESCCGGGCEEEEEEEEET
T ss_pred             CCCCccccEeEEEEcccC
Confidence            999999999999987653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.86  E-value=0.0012  Score=58.47  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce---eee-cC----------CceEEEeecCCCceeeEeEEEEe
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT---LIE-HD----------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~---l~~-~~----------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..|..+.+.+|++|+|.|..... ...+.|++..  ..   +.. ..          ..++.......    ..+.|+|.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~L~i~   78 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGG----TYSTLKVQ   78 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTS----SSEEEEES
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCC----CEEEEEEC
Confidence            45667789999999999986543 4578998653  11   110 00          11222222111    13569999


Q ss_pred             ccCCCCCeEEEEEEEe
Q psy12803        438 NVNISDFDTYRCISKN  453 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N  453 (902)
                      +++.+|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          79 PAELEDSGVYFCASSQ   94 (111)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CcccCCCceEEEeeeC
Confidence            9999999999998654

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.85  E-value=0.00026  Score=63.83  Aligned_cols=70  Identities=20%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc--ccC--------Cccceec---cCCcEEEEeeeeecCceeE
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI--TLG--------SWKDSAV---ASSTLNFTRINRINMGAYM  362 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~--~~~--------~~~~~~~---~~~sL~I~~Vt~~DsG~Yt  362 (902)
                      |..+.+.+|++|+|.|...+.-...+.|+|....  +.  ...        ..+....   ....|.|.+++.+|+|.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            4567789999999999988755567999985321  11  000        0111111   1236999999999999999


Q ss_pred             EeecC
Q psy12803        363 CLADN  367 (902)
Q Consensus       363 C~A~N  367 (902)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            97543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.84  E-value=0.0025  Score=56.30  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--e---ecCCce--------EEEeecCCCceeeEeEEEEe
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--I---EHDGVK--------YSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~---~~~~~~--------~~~~~~~~~s~~~~stL~I~  437 (902)
                      +..|..+.+.+|++++|.|..... ...+.|++..  ..+  +   ......        +.......    ....|.|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~   77 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTT----EDFPLRLL   77 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSS----SBCCEEES
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCC----CEEEEEEC
Confidence            445666789999999999987543 4579998742  221  1   011111        11111111    12359999


Q ss_pred             ccCCCCCeEEEEEEEe
Q psy12803        438 NVNISDFDTYRCISKN  453 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N  453 (902)
                      ++..+|+|.|.|.+..
T Consensus        78 ~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          78 SAAPSQTSVYFCASSY   93 (112)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCHHHCEEEEEeecC
Confidence            9999999999998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.0026  Score=54.99  Aligned_cols=81  Identities=21%  Similarity=0.248  Sum_probs=53.7

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.. .+..|+.++|.|.+.++ |. ..|+|.+++..+.  ...........++++...+.|.+.   .++...
T Consensus         4 ~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~--~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~   77 (99)
T d1lk2b_           4 TPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP--KVEMSDMSFSKDWSFYILAHTEFT---PTETDT   77 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT--TCEEEEEEECTTCCEEEEEEEEEC---CCSSCC
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecC--CcEECceeECCCCCEEEEEEeEec---CcCCCE
Confidence            4555553221 24568889999999987 43 4799988876553  222233445666777777788775   455668


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |+|++....
T Consensus        78 ytC~V~H~s   86 (99)
T d1lk2b_          78 YACRVKHDS   86 (99)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999997753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.83  E-value=0.0017  Score=57.60  Aligned_cols=75  Identities=21%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc-----CCceEEEEecC--Ce--eeec--------CCceEEEeecCCCceeeEeEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF-----PLSVRYWEFID--GT--LIEH--------DGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~-----P~P~v~W~k~~--~~--l~~~--------~~~~~~~~~~~~~s~~~~stL  434 (902)
                      ++..+..+.+.+|++|+|.|.+.+.     ....+.|++..  ..  ++..        ...++......     ....|
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~-----~~~~L   78 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG-----TAFTL   78 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS-----SEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC-----CEEEE
Confidence            3445667889999999999988653     24578998643  11  1111        11122222111     24569


Q ss_pred             EEeccCCCCCeEEEEEE
Q psy12803        435 NISNVNISDFDTYRCIS  451 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A  451 (902)
                      .|.+++.+|++.|.|..
T Consensus        79 ~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          79 RISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             EESSCCGGGCEEEEEEE
T ss_pred             EECCccccCCceEEEEe
Confidence            99999999999999954

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0005  Score=59.47  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=51.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+.. .|..|++|+|.|.......-.+.|++++.....    ....  ..     ....+.|.+|+.+|+|+|+
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~----~~~~--~~-----~~a~F~l~~v~~~~~G~Y~   72 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP----QHQS--GE-----HPANFSLGPVDLNVSGIYR   72 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC----SEEE--CS-----SSEEEECCSCCGGGCEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccce----EEcC--CC-----cccEEEEeccccccCcEEE
Confidence            5777777765 589999999999864344457889887753211    1111  11     1245999999999999999


Q ss_pred             EEEEeC
Q psy12803        449 CISKNE  454 (902)
Q Consensus       449 C~A~N~  454 (902)
                      |.....
T Consensus        73 C~y~~~   78 (96)
T d1ucta2          73 CYGWYN   78 (96)
T ss_dssp             EEEECT
T ss_pred             EEEEcC
Confidence            987654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.82  E-value=0.00042  Score=60.77  Aligned_cols=70  Identities=17%  Similarity=0.315  Sum_probs=46.1

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--ccc--------CCcccee---ccCCcEEEEeeeeecCcee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--ITL--------GSWKDSA---VASSTLNFTRINRINMGAY  361 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~~--------~~~~~~~---~~~~sL~I~~Vt~~DsG~Y  361 (902)
                      .|..+++.+|++|+|.|..+. ....+.|||....  +  +..        ...+...   ....+|.|.+++.+|+|.|
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            456688999999999999765 3446899985321  1  000        0001111   1123799999999999999


Q ss_pred             EEeecC
Q psy12803        362 MCLADN  367 (902)
Q Consensus       362 tC~A~N  367 (902)
                      .|.+..
T Consensus        85 yCa~~~   90 (104)
T d1yqvl1          85 YCQQWG   90 (104)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            997654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.81  E-value=0.0019  Score=57.37  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=48.6

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccC-----CceEEEEecC--Cee--eecC--------CceEEEeecCCCceeeEeEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFP-----LSVRYWEFID--GTL--IEHD--------GVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P-----~P~v~W~k~~--~~l--~~~~--------~~~~~~~~~~~~s~~~~stL  434 (902)
                      ++..|..+.+.+|++|+|.|.+.+..     ...+.|++..  ..+  +...        ..++......     ....|
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~-----~~~~L   78 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG-----TDFTL   78 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC-----CEEEE
Confidence            34557778899999999999875432     3458898652  111  1110        1122221111     12469


Q ss_pred             EEeccCCCCCeEEEEEEEe
Q psy12803        435 NISNVNISDFDTYRCISKN  453 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N  453 (902)
                      .|.+++.+|++.|.|...+
T Consensus        79 ~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          79 KISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             EESSCCGGGCEEEEEEECS
T ss_pred             EECccccCcCEeEEEEcCC
Confidence            9999999999999996543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.81  E-value=0.00044  Score=61.47  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=45.8

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecC--CCcccc-------------cCCcccee-c---cCCcEEEEeeeeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTS--ENKPIT-------------LGSWKDSA-V---ASSTLNFTRINRINM  358 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~--~~~~~~-------------~~~~~~~~-~---~~~sL~I~~Vt~~Ds  358 (902)
                      |..+.+.+|++|+|.|...+. ...+.|||.  +..+..             ....+... .   ...+|+|.+++.+|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            556889999999999997653 357899983  222110             00011111 1   123699999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+..
T Consensus        85 a~YyCA~~~   93 (113)
T d2ntsp1          85 ALYLCASSL   93 (113)
T ss_dssp             EEEEEEEES
T ss_pred             eeeeeeeeC
Confidence            999997753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00034  Score=62.18  Aligned_cols=68  Identities=13%  Similarity=0.288  Sum_probs=44.0

Q ss_pred             cEEEEcCCeEEEEEecCC--CCCCceEEecCCCc--c--cccC--C---------ccceec---cC--CcEEEEeeeeec
Q psy12803        300 PIVVREGDNVRLRCVATG--HPKPSIIWKTSENK--P--ITLG--S---------WKDSAV---AS--STLNFTRINRIN  357 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~--~--~~~~--~---------~~~~~~---~~--~sL~I~~Vt~~D  357 (902)
                      .+.+.+|++|+|.|...+  .....+.|+|....  .  +...  .         .+....   ..  .+|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            367889999999998764  23456889984221  1  1000  0         111111   11  259999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+..
T Consensus        88 sg~Y~Cav~~   97 (113)
T d1smoa_          88 SGLYQCVIYQ   97 (113)
T ss_dssp             CEEEEEEECC
T ss_pred             CceEEEEEEC
Confidence            9999998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.79  E-value=0.00045  Score=61.52  Aligned_cols=69  Identities=20%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc---c-C-------Cccce----eccCCcEEEEeeeeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT---L-G-------SWKDS----AVASSTLNFTRINRINM  358 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~---~-~-------~~~~~----~~~~~sL~I~~Vt~~Ds  358 (902)
                      |..+.+.+|++|+|.|..+. ....+.|||....  +  +.   . .       ..+..    .....+|.|.+++.+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS   84 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   84 (114)
T ss_dssp             CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             CCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence            45588999999999999864 4457999974321  1  00   0 0       00010    11224799999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (114)
T d1ogae1          85 AFYLCASSS   93 (114)
T ss_dssp             EEEEEEEES
T ss_pred             eeEEEeecc
Confidence            999997643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.78  E-value=0.00087  Score=59.33  Aligned_cols=75  Identities=23%  Similarity=0.272  Sum_probs=49.3

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eeec--------CCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIEH--------DGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      .+..+.+.+|++|+|.|.........+.|++..  ..  ++..        ...++......     ...+|.|.+++.+
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l~~~   80 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG-----NMATLTISRVEAG   80 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEESSCCGG
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC-----CccceEEeeeccC
Confidence            344678899999999999766555679998653  11  1110        01122221111     2456999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12803        443 DFDTYRCISKNE  454 (902)
Q Consensus       443 DsG~YtC~A~N~  454 (902)
                      |++.|.|.+...
T Consensus        81 DsavYyCA~~~~   92 (109)
T d1w72l1          81 DEADYYCQVWDS   92 (109)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCEEEEEEecCC
Confidence            999999988654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00093  Score=58.79  Aligned_cols=88  Identities=14%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.......+..++|.|.+.++ |. ..|+|.+++..+..............++.|...+.|.|..-.......
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~   84 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS   84 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCE
Confidence            4555443322222246689999999886 54 479998876654221001111223456778888899987665444568


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|.|.....
T Consensus        85 ytC~V~H~~~   94 (107)
T d1mjul2          85 YTCEATHKTS   94 (107)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEECCC
Confidence            9999987543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.75  E-value=0.0022  Score=56.77  Aligned_cols=78  Identities=24%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc----CCceEEEEecC--Cee---eec-------CCceEEEeecCCCceeeEeEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF----PLSVRYWEFID--GTL---IEH-------DGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~----P~P~v~W~k~~--~~l---~~~-------~~~~~~~~~~~~~s~~~~stL~  435 (902)
                      ++..|..+.+.+|++|+|.|.+...    ....+.|++..  ..+   +..       ...++......     ....|+
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~-----~~~~L~   78 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG-----TDFTLN   78 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC-----Cchhcc
Confidence            4455777889999999999987542    22348998753  211   111       01223222211     135699


Q ss_pred             EeccCCCCCeEEEEEEEeC
Q psy12803        436 ISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~  454 (902)
                      |.+++.+|++.|.|.+...
T Consensus        79 I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          79 IHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             cccccccCCceEEEEECCC
Confidence            9999999999999976543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.0023  Score=56.57  Aligned_cols=75  Identities=19%  Similarity=0.418  Sum_probs=49.0

Q ss_pred             eeeeecCceEEEEEEeecc--CCceEEEEecC--Ce---eeecC--C--------ceEEEeecCCCceeeEeEEEEeccC
Q psy12803        378 RVGVPIGRTATLECEVEAF--PLSVRYWEFID--GT---LIEHD--G--------VKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~--P~P~v~W~k~~--~~---l~~~~--~--------~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ...+.+|++|+|.|...+.  ..-.+.|++..  ..   ++...  .        .++.+.....   ..+.+|+|.+++
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~---~~~~~lti~~L~   80 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPS---EAMLQVQMTDLQ   80 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGG---GTEEEEEECSCC
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECC---CCEEEEEECccc
Confidence            4568899999999998754  45578898742  21   21111  0        1233332222   124669999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy12803        441 ISDFDTYRCISKNEV  455 (902)
Q Consensus       441 ~~DsG~YtC~A~N~~  455 (902)
                      .+|+|.|.|.....-
T Consensus        81 ~eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          81 VTDSGLYRCVIYHPP   95 (110)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             cCCCEEEEEEEeCCC
Confidence            999999999876543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.002  Score=56.23  Aligned_cols=76  Identities=14%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             ecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        382 PIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      ..+.+++|.|.+.++ |.. .|+|++++..+...  .........++.|...+.|.|..-.......|+|.|.......+
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~--~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVD--LSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE   96 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGG--GEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCC--ceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence            345679999999985 544 68998877665432  22222334456677888899877554455679999999764433

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.74  E-value=0.0006  Score=60.69  Aligned_cols=70  Identities=21%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             CCcEEEEcCCeEEEEEecCCCC-----CCceEEecCCC--ccc---cc------C-Ccccee---ccCCcEEEEeeeeec
Q psy12803        298 SSPIVVREGDNVRLRCVATGHP-----KPSIIWKTSEN--KPI---TL------G-SWKDSA---VASSTLNFTRINRIN  357 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P-----~p~v~W~k~~~--~~~---~~------~-~~~~~~---~~~~sL~I~~Vt~~D  357 (902)
                      |..+.+.+|++|+|.|.+++..     ...+.|++...  .+.   ..      . ..+...   ..+..|.|.+++.+|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            5668899999999999865422     34588997521  110   00      0 011111   112369999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      ++.|.|...+
T Consensus        88 sAvYYC~~~~   97 (112)
T d1ncwl1          88 LGVYYCWQGT   97 (112)
T ss_dssp             CEEEEEEECS
T ss_pred             CEeEEEEcCC
Confidence            9999996544

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.73  E-value=0.0015  Score=58.11  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=46.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC-----CCCceEEecCCCc--c--cc-c-------CCccceec---cCCcEEEEeeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH-----PKPSIIWKTSENK--P--IT-L-------GSWKDSAV---ASSTLNFTRINRI  356 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~-----P~p~v~W~k~~~~--~--~~-~-------~~~~~~~~---~~~sL~I~~Vt~~  356 (902)
                      .|..+.+.+|++|+|.|..++.     ....+.|+|....  +  +. .       ...+....   ...+|+|.+++.+
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            3556889999999999997642     2346899974321  1  00 0       00111111   1237999999999


Q ss_pred             cCceeEEeecC
Q psy12803        357 NMGAYMCLADN  367 (902)
Q Consensus       357 DsG~YtC~A~N  367 (902)
                      |+|.|.|...+
T Consensus        88 DsavYyCa~~~   98 (113)
T d1n4xl_          88 DLGIYYCFQGS   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEEEEECC
Confidence            99999996554

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0011  Score=59.31  Aligned_cols=71  Identities=8%  Similarity=0.146  Sum_probs=45.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCC---ceEEecCCCc--c--ccc---CC-------ccc-ee---ccCCcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKP---SIIWKTSENK--P--ITL---GS-------WKD-SA---VASSTLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~~~~--~--~~~---~~-------~~~-~~---~~~~sL~I~~Vt~  355 (902)
                      .|..+.+.+|++|+|.|.....-..   .+.|+|....  +  +..   ..       ... ..   .....|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            4555778999999999997643322   4889985422  1  100   00       000 01   1123799999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998754

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.70  E-value=0.0026  Score=56.45  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc-----CCceEEEEecCC--e--eeec--------CCceEEEeecCCCceeeEeEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF-----PLSVRYWEFIDG--T--LIEH--------DGVKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~-----P~P~v~W~k~~~--~--l~~~--------~~~~~~~~~~~~~s~~~~stL  434 (902)
                      ++..|..+.+.+|++|+|.|...+.     ....+.|++...  .  ++..        ...++......     ....|
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-----~~~~L   79 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG-----TDFTL   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS-----SEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC-----CcccC
Confidence            4456777889999999999997543     234689986531  1  1110        11122222111     23569


Q ss_pred             EEeccCCCCCeEEEEEEEe
Q psy12803        435 NISNVNISDFDTYRCISKN  453 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N  453 (902)
                      +|.+++.+|++.|.|...+
T Consensus        80 ~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          80 KISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             EESSCCGGGCEEEEEEECS
T ss_pred             ccCCCCcccCEEEEEEECC
Confidence            9999999999999996544

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0022  Score=55.63  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.. .+..|+.++|.|.+.++ |. ..|+|.+++..+.  ...........+++|...+.|.+.   .+|...
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~--~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~   78 (100)
T d1k5nb_           5 TPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE--KVEHSDLSFSKDWSFYLLYYTEFT---PTEKDE   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT--TCEECCCEECTTSCEEEEEEEEEC---CCSSCC
T ss_pred             CCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecC--CccccceecCCCCcEEEEEEeEEC---CCCCCE
Confidence            4555553221 24578899999999987 44 3789998876652  222222334566777777778775   456678


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |+|++....
T Consensus        79 ytC~V~H~s   87 (100)
T d1k5nb_          79 YACRVNHVT   87 (100)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999997753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.68  E-value=0.0018  Score=57.25  Aligned_cols=74  Identities=15%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             EcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--e-ee-cC----------CceEEEeecCCCceeeEeEEEEe
Q psy12803        374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--L-IE-HD----------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l-~~-~~----------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..|..+.+.+|++|+|.|.... ....+.|++..  ..  + .. ..          ..++.......    ..++|+|.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~   78 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEG----SVSTLKIQ   78 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTS----SCEEEEES
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcC----CEEEEEEC
Confidence            4466677899999999998653 34578998742  11  1 10 00          11122211111    23569999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy12803        438 NVNISDFDTYRCISK  452 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~  452 (902)
                      +++.+|+|.|.|.+.
T Consensus        79 ~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          79 RTQQEDSAVYLCASS   93 (112)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             CCCcCCCEEEEEeee
Confidence            999999999999875

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00089  Score=59.79  Aligned_cols=71  Identities=10%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC---CceEEecCCCc--c--cc---cCC------ccce-----eccCCcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK---PSIIWKTSENK--P--IT---LGS------WKDS-----AVASSTLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~---p~v~W~k~~~~--~--~~---~~~------~~~~-----~~~~~sL~I~~Vt~  355 (902)
                      .|..+.+.+|++|+|.|.....-.   ..+.|+|....  +  +.   ...      .+..     ......|.|.+++.
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA   84 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence            455577899999999999754222   24789984321  1  10   000      0000     11223799999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (117)
T d1dqta_          85 VDTGLYLCKVEL   96 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEeEEEEEec
Confidence            999999997643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.0047  Score=52.50  Aligned_cols=78  Identities=19%  Similarity=0.248  Sum_probs=52.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ||.+.+...   ......++|.|.+.++ |. ..|+|.+++..+.   ..........+++|...+.|.|..   +|...
T Consensus         3 PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~---~~~~~~~~~~dgty~~~S~l~v~~---~~~~~   73 (91)
T d3frua1           3 PPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASG---SGNCSTGPNGDGSFHAWSLLEVKR---GDEHH   73 (91)
T ss_dssp             CCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECC---CCEEEEEECSSSCEEEEEEEEEET---TCGGG
T ss_pred             CCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCC---ccCccceecCCCCEeEEEEEEECC---CCCCE
Confidence            555554222   1234579999999987 64 3799998775542   223344556778888888898864   45568


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |+|++....
T Consensus        74 ytC~V~H~s   82 (91)
T d3frua1          74 YQCQVEHEG   82 (91)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0015  Score=57.39  Aligned_cols=88  Identities=16%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEE-EeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYS-ISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~-~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.+.+.+........+.++|.|.+.++ |. ..|+|.+++..+.. ...... .....++.|...+.|.|..-.....-
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~-~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~   83 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG-NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK   83 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS-SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCC-CEEEecccccCCCCcEEEEEEEEECHHHhCCCC
Confidence            4555543222222246789999999986 54 37999887754422 111111 12234567888889999766544445


Q ss_pred             EEEEEEEeCCce
Q psy12803        446 TYRCISKNEVDI  457 (902)
Q Consensus       446 ~YtC~A~N~~G~  457 (902)
                      .|+|+|......
T Consensus        84 ~ytC~V~H~~~~   95 (107)
T d1c5cl2          84 VYACEVTHQGLS   95 (107)
T ss_dssp             EEEEEEECTTCS
T ss_pred             EEEEEEEECCCC
Confidence            899999886543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0048  Score=53.84  Aligned_cols=86  Identities=12%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC--CCeEEEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS--DFDTYRCIS  451 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~--DsG~YtC~A  451 (902)
                      +..........++|.|.+.++ |. ..|+|.+++......  .........++.|...+.|.|..-.-.  ....|+|.|
T Consensus        13 p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~--~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V   90 (105)
T d1dn0b2          13 SCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISS--TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKV   90 (105)
T ss_dssp             CC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECC--EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEE
T ss_pred             CCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCC--EEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEE
Confidence            333334456789999999986 54 479998887765421  111111234456777888888765432  224799999


Q ss_pred             EeCCceeEEEEE
Q psy12803        452 KNEVDIAKGSLI  463 (902)
Q Consensus       452 ~N~~G~~~~s~~  463 (902)
                      ....+..+..+.
T Consensus        91 ~H~~~~~~~~v~  102 (105)
T d1dn0b2          91 QHPNGNKEKNVP  102 (105)
T ss_dssp             ECTTCCEEEEEE
T ss_pred             EECCCCEEeEEe
Confidence            988776655543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.62  E-value=0.0012  Score=58.15  Aligned_cols=74  Identities=23%  Similarity=0.371  Sum_probs=49.1

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecC--Ce--eeec--------CCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GT--LIEH--------DGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~--l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      .|..+.+.+|++|+|.|.........+.|++..  ..  ++..        ...++......     ....|.|.+++.+
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~l~~~   79 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-----TTATLTISGAQPE   79 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTCCGG
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC-----CEeeeeEcCcccc
Confidence            456788999999999998765555578998743  11  1110        01123322211     1346999999999


Q ss_pred             CCeEEEEEEEe
Q psy12803        443 DFDTYRCISKN  453 (902)
Q Consensus       443 DsG~YtC~A~N  453 (902)
                      |+|.|.|.+..
T Consensus        80 Dsa~YyCA~~~   90 (108)
T d1nfde1          80 DEAAYYCLSSY   90 (108)
T ss_dssp             GCSEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0015  Score=57.22  Aligned_cols=77  Identities=12%  Similarity=0.099  Sum_probs=47.4

Q ss_pred             cCceeeeecCceEEEEEEeecc---C---CceEEEEecCCe---ee-ec---------CCceEEEeecCCCceeeEeEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF---P---LSVRYWEFIDGT---LI-EH---------DGVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~---P---~P~v~W~k~~~~---l~-~~---------~~~~~~~~~~~~~s~~~~stL~  435 (902)
                      .|..+.+.+|++|.|.|.....   +   .-.+.|++....   .. ..         ...++.+.....   ....+|.
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~   82 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMD---HKVCNLL   82 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGG---GTBCCEE
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCc---CCEEEEE
Confidence            4667889999999999988521   1   124557654321   11 10         112233221111   1234599


Q ss_pred             EeccCCCCCeEEEEEEEeC
Q psy12803        436 ISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~N~  454 (902)
                      |.+|+.+|+|.|.|.+...
T Consensus        83 I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          83 LKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECC
T ss_pred             ECCCChhHCEEEEEEEEeC
Confidence            9999999999999999654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.60  E-value=0.0033  Score=54.28  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=54.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.. .+..++.++|.|.+.++ | ...|+|.+++..+.... .........+++|...+.|.|.   .++...
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~-~~~~~~~~~dgty~~~s~L~v~---~~~~~~   77 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSS-AHKTAQPNGDWTYQTLSHLALT---PSYGDT   77 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCC-SBCCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCe-EeCceEECCCCCEEEEEEeEcC---CCCCCE
Confidence            5666553322 24567789999999987 4 45899988876653321 1222234566778878888875   445558


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|++.....
T Consensus        78 ytC~V~H~sl   87 (98)
T d1hdmb1          78 YTCVVEHIGA   87 (98)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999988644

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.59  E-value=0.0017  Score=57.49  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             CceeeeecCceEEEEEEeeccC--CceEEEEecCC----eeeec--------CCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDG----TLIEH--------DGVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~----~l~~~--------~~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      +..+.+.+|++|+|.|.+.+.-  ...+.|++...    .++..        ...++......     ...+|.|.+++.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~~~~   81 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG-----TSATLGITGLQT   81 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEESSCCG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC-----CEeeeEEeeecc
Confidence            4568899999999999886543  34699986521    11110        11222222211     135699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12803        442 SDFDTYRCISKNE  454 (902)
Q Consensus       442 ~DsG~YtC~A~N~  454 (902)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          82 GDEADYYCGTWDS   94 (111)
T ss_dssp             GGCSEEEEEEEET
T ss_pred             ccCcceEEeecCC
Confidence            9999999988654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.59  E-value=0.00097  Score=59.09  Aligned_cols=68  Identities=12%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             CCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cccc------------cC-Ccccee----ccCCcEEEEeeeeecC
Q psy12803        298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPIT------------LG-SWKDSA----VASSTLNFTRINRINM  358 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~~------------~~-~~~~~~----~~~~sL~I~~Vt~~Ds  358 (902)
                      |..+.+.+|++|+|.|..+.. ...+.|||...  .+..            .. ..+...    ..+..|.|.+++.+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            555789999999999987653 45799998422  1100            00 011111    1123799999999999


Q ss_pred             ceeEEeec
Q psy12803        359 GAYMCLAD  366 (902)
Q Consensus       359 G~YtC~A~  366 (902)
                      |.|.|.+.
T Consensus        85 avYyCA~~   92 (112)
T d2bnub1          85 SVYFCASS   92 (112)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeec
Confidence            99999764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.57  E-value=0.0016  Score=57.71  Aligned_cols=78  Identities=21%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCe----ee--ecCCc---------eEEEeecCCCceeeEeEEEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT----LI--EHDGV---------KYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~----l~--~~~~~---------~~~~~~~~~~s~~~~stL~I  436 (902)
                      ++..|..+.+.+|++|+|.|..... ...+.|++....    ++  .....         ++......    .....|+|
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I   78 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD----DYHSEMNM   78 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECT----TSCEEEEC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCC----CCeEEEEe
Confidence            4455777789999999999986543 357999975421    11  01111         11111111    11357999


Q ss_pred             eccCCCCCeEEEEEEEeC
Q psy12803        437 SNVNISDFDTYRCISKNE  454 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N~  454 (902)
                      .+++.+|+|.|.|.+...
T Consensus        79 ~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          79 SALELEDSAMYFCASSLR   96 (113)
T ss_dssp             CSCCGGGCEEECEEEESS
T ss_pred             cccCcCCceeEEEEeecC
Confidence            999999999999987543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.53  E-value=0.0029  Score=54.97  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      .+|.+.+.+.. .+..|+.++|.|.+.++ |. ..|+|++++..+.. ...........+++|...+.|.+..   ++..
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~-~~~~~~~~~~~dgty~~~S~L~v~~---~~~~   78 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTE-GVSETVFLPRDDHLFRKFHYLTFLP---STDD   78 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECS-SEEECCCEECSSSCEEEEEEEEECC---CTTC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCC-CcEeCeEEECCCCcEEEEEEeEEcC---CCCC
Confidence            46777664322 24567888999999988 54 48999988766532 1111122335567788888888865   3345


Q ss_pred             EEEEEEEeCC
Q psy12803        446 TYRCISKNEV  455 (902)
Q Consensus       446 ~YtC~A~N~~  455 (902)
                      .|+|++....
T Consensus        79 ~ytC~V~H~s   88 (101)
T d1fnga1          79 FYDCEVDHWG   88 (101)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEECC
Confidence            7999998764

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0012  Score=56.89  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             CcEEEEcCCeEEEEEecCCCCCCceE-EecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        299 SPIVVREGDNVRLRCVATGHPKPSII-WKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P~p~v~-W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..+.+.+|+++.+.|.++. |..+++ |...+..+.. ...........-++|.+++..|+|.|.|.|..
T Consensus        13 ~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p-~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~   80 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIP-DGKRIIWDSRKGFIISNATYKEIGLLTCEATV   80 (95)
T ss_dssp             EEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECC-CSSSEEEETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCC-CCCEEEECCCCCEEEeCCCcccCeEEEEEEEE
Confidence            3477999999999999996 666664 4445444433 22344455566799999999999999999854

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.52  E-value=0.00093  Score=59.40  Aligned_cols=69  Identities=17%  Similarity=0.377  Sum_probs=45.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--c-c--------cC--Ccccee--c--cCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--I-T--------LG--SWKDSA--V--ASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~-~--------~~--~~~~~~--~--~~~sL~I~~Vt~~D  357 (902)
                      .|..+.+.+|++|+|.|..... ...+.|||....  +  + .        ..  ..+...  .  ....|+|.+++.+|
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             cCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            4566889999999999997653 357999985321  1  0 0        00  011111  1  12369999999999


Q ss_pred             CceeEEeec
Q psy12803        358 MGAYMCLAD  366 (902)
Q Consensus       358 sG~YtC~A~  366 (902)
                      +|.|.|.+.
T Consensus        86 sa~YyCa~~   94 (113)
T d1nfdb1          86 SAMYFCASS   94 (113)
T ss_dssp             CEEECEEEE
T ss_pred             ceeEEEEee
Confidence            999999764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0021  Score=55.58  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=41.2

Q ss_pred             EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce---eccCCcEEEEeeeeecCceeEEeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS---AVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~---~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      -.|..|++|+|.|.... ....+.++|++............   ......+.|.+|+.+|+|+|+|....
T Consensus        13 ~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2          13 PVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             SEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            45889999999999764 45567777766542111100000   11123699999999999999997754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.0058  Score=54.22  Aligned_cols=77  Identities=13%  Similarity=0.015  Sum_probs=46.3

Q ss_pred             cCceeeeecCceEEEEEEeeccCCc---eEEEEecC--Cee--e-e--cCCceEEEeecCCCc-----eeeEeEEEEecc
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLS---VRYWEFID--GTL--I-E--HDGVKYSISDVDKGS-----YQYIMQLNISNV  439 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~--~~l--~-~--~~~~~~~~~~~~~~s-----~~~~stL~I~~V  439 (902)
                      .|..+.+.+|++|+|.|.....-..   .+.|++..  ..+  . .  .......  ......     ......|.|.++
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~l   82 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVG--FLDYPFCSGTFNESRVNLTIQGL   82 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEE--CTTCTTEEEEEETTEEEEEECSC
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCccccc--CCCCcEEEEeCCCCEEEEEhhcC
Confidence            3566778899999999998644322   47898743  211  1 0  0010000  000000     012456999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|+|.|.|.+..
T Consensus        83 ~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          83 RAVDTGLYLCKVEL   96 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCEeEEEEEec
Confidence            99999999998754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.49  E-value=0.0036  Score=54.16  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             CCCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        368 VPPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      .+|.+.+.+.. .+..++.++|.|.+.++ | ...|+|.+++..+.. ...........+++|...+.|.+..   +|..
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~-~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~   78 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTE-GVSETSFLSKSDHSFFKISYLTFLP---SADE   78 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECT-TEEECCCEECTTSCEEEEEEEEECC---CTTC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC-CcEecceEECCCCCEEEEEEEEEcC---CCCC
Confidence            46766653322 24567889999999988 4 347999988766532 1111122235566777777888764   4445


Q ss_pred             EEEEEEEeCC
Q psy12803        446 TYRCISKNEV  455 (902)
Q Consensus       446 ~YtC~A~N~~  455 (902)
                      .|+|++....
T Consensus        79 ~ytC~V~H~s   88 (99)
T d1uvqa1          79 IYDCKVEHWG   88 (99)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            7999998753

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.48  E-value=0.0022  Score=56.73  Aligned_cols=70  Identities=21%  Similarity=0.314  Sum_probs=45.4

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--c-cc-C---------Cccce-e---ccCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--I-TL-G---------SWKDS-A---VASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~-~~-~---------~~~~~-~---~~~~sL~I~~Vt~~D  357 (902)
                      .|..+.+.+|++|+|.|.... -...+.|||....  +  + .. .         ..+.. .   .....|.|.+++.+|
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            355678999999999998654 3457899984311  1  0 00 0         01111 1   112369999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999998753

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.47  E-value=0.00094  Score=59.40  Aligned_cols=71  Identities=21%  Similarity=0.403  Sum_probs=46.0

Q ss_pred             cCCcEEEEcCCeEEEEEecCCC------CCCceEEecCCCc--cc--cc-------C-Ccccee---ccCCcEEEEeeee
Q psy12803        297 SSSPIVVREGDNVRLRCVATGH------PKPSIIWKTSENK--PI--TL-------G-SWKDSA---VASSTLNFTRINR  355 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~------P~p~v~W~k~~~~--~~--~~-------~-~~~~~~---~~~~sL~I~~Vt~  355 (902)
                      .|..+.+.+|++|+|.|.+.+.      ....+.|+|....  +.  ..       . ..+...   .....|.|.+++.
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            3566889999999999987642      1234899985321  10  00       0 011111   1123799999999


Q ss_pred             ecCceeEEeecC
Q psy12803        356 INMGAYMCLADN  367 (902)
Q Consensus       356 ~DsG~YtC~A~N  367 (902)
                      +|+|.|.|.+..
T Consensus        87 ~Dsa~YyCA~~~   98 (113)
T d1q9ra1          87 EDLAVYYCKQSY   98 (113)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CCCeEEEecccC
Confidence            999999998754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.47  E-value=0.011  Score=51.42  Aligned_cols=79  Identities=24%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             eecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803        381 VPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA  458 (902)
Q Consensus       381 v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~  458 (902)
                      +..|+..+|.|.+.++ |. ..|.|.+++..+..  ..........+++|...+.|.|..   +|...|+|.+....-..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~--~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~~   89 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEG--FGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDRY   89 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSS--CCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTTE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCC--cEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCCC
Confidence            4568889999999986 53 47899887765422  222233445677888888888764   44557999999875444


Q ss_pred             EEEEEE
Q psy12803        459 KGSLIL  464 (902)
Q Consensus       459 ~~s~~L  464 (902)
                      ......
T Consensus        90 p~~~~w   95 (103)
T d1hdma1          90 TAIAYW   95 (103)
T ss_dssp             EEEEEE
T ss_pred             CEEEEe
Confidence            433333

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.46  E-value=0.002  Score=57.83  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=44.0

Q ss_pred             CcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc--c-c--c-C--------Cccceec--cC---CcEEEEeeee
Q psy12803        299 SPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP--I-T--L-G--------SWKDSAV--AS---STLNFTRINR  355 (902)
Q Consensus       299 ~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~--~-~--~-~--------~~~~~~~--~~---~sL~I~~Vt~  355 (902)
                      ..+++.+|++|+|.|.+.+..  ...+.|+|..  ..+  + .  . .        ..+....  ..   ..|+|.+++.
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            357788999999999987632  3468999843  111  1 0  0 0        0111111  11   2599999999


Q ss_pred             ecCceeEEeec
Q psy12803        356 INMGAYMCLAD  366 (902)
Q Consensus       356 ~DsG~YtC~A~  366 (902)
                      +|+|.|.|.+.
T Consensus        89 ~Dsa~YyCA~~   99 (120)
T d1ypzf1          89 EDEAIYYCSYG   99 (120)
T ss_dssp             GGCSEEEEEEC
T ss_pred             ccceeEEEEEc
Confidence            99999999764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0021  Score=55.00  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+..+ |..|++|+|.|.... +...+.|+|++.....      .....     +..+.+.|.+|+.+|+|.|+
T Consensus         4 kPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~------~~~~~-----~~~a~F~i~~v~~~~~G~Y~   70 (93)
T d1olla2           4 TPTLSVHPGPE-VISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV------QRGYG-----KVQAEFPLGPVTTAHRGTYR   70 (93)
T ss_dssp             CCEEEEESCSE-EETTCEEEEEEECSS-SCSEEEEEEESSSCEE------EEEEC-----SSEEEEEEEECCGGGCEEEE
T ss_pred             CCEEEEeCCCc-ccCCCcEEEEECCCC-CCCEEEEEECCCccce------eecCC-----CceeEEEecccChhcCceEE
Confidence            57777777654 889999999998643 4457888887653321      11111     12456999999999999999


Q ss_pred             EEE
Q psy12803        449 CIS  451 (902)
Q Consensus       449 C~A  451 (902)
                      |..
T Consensus        71 C~~   73 (93)
T d1olla2          71 CFG   73 (93)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            974

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.44  E-value=0.0063  Score=53.58  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             EEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Cee--ee-c--CC---------ceEEEeecCCCceeeEeEE
Q psy12803        371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTL--IE-H--DG---------VKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l--~~-~--~~---------~~~~~~~~~~~s~~~~stL  434 (902)
                      .+...|..+.+.+|++|+|.|.....-...+.|++..  ..+  +. .  ..         .++......      .+.|
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~------~~~l   76 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT------DTEL   76 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE------TTEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccccc------ccEE
Confidence            3455677778899999999999876656689999763  211  11 0  11         111111111      1348


Q ss_pred             EEeccCCCCCeEEEEEEEe
Q psy12803        435 NISNVNISDFDTYRCISKN  453 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N  453 (902)
                      .|..++.+|++.|.|.+.-
T Consensus        77 ~l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          77 RLQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             EEEEESCCSCEEEEEEEES
T ss_pred             EEecCCccCCccEEEEEec
Confidence            8888999999999998643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.44  E-value=0.0013  Score=56.86  Aligned_cols=67  Identities=16%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee--ccCCcEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--VASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .-.|..|++|+|.|...- ....+.++|++.............  .....+.|.+|+.+|+|+|.|....
T Consensus        10 ~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          10 GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            456889999999999765 456788888765422111100011  1124699999999999999997644

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0014  Score=57.67  Aligned_cols=88  Identities=15%  Similarity=0.265  Sum_probs=57.2

Q ss_pred             CCCEEEE-cCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCc---eEEEeecCCCceeeEeEEEEeccCC
Q psy12803        368 VPPQILI-RNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGV---KYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       368 ~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~---~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .+|.+.+ .+....+..++.++|.|.+.++ |.. .|.|++++..+......   ........++.|...+.|.|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            3566655 3444445678899999999886 544 89998877665332111   1111224566777888898876554


Q ss_pred             CCCeEEEEEEEeCC
Q psy12803        442 SDFDTYRCISKNEV  455 (902)
Q Consensus       442 ~DsG~YtC~A~N~~  455 (902)
                      .....|+|.|....
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            44568999998754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.38  E-value=0.0036  Score=55.19  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             EEcCceeeeecCceEEEEEEeeccCCceEEEEecCC--e--eee---cCC--------ceEEEeecCCCceeeEeEEEEe
Q psy12803        373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--T--LIE---HDG--------VKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~--l~~---~~~--------~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ...|..+.+.+|++|+|.|..... ...+.|++...  .  ++.   ...        ..+......    ....+|.|.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~   76 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIR----TEHFPLTLE   76 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSS----SSBCCEEBS
T ss_pred             EECCCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCC----CCceEeeec
Confidence            345666789999999999987532 45789997532  1  110   000        011111111    123459999


Q ss_pred             ccCCCCCeEEEEEEEeCC
Q psy12803        438 NVNISDFDTYRCISKNEV  455 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N~~  455 (902)
                      +++.+|+|.|.|.+....
T Consensus        77 ~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          77 SARPSHTSQYLCASSENI   94 (112)
T ss_dssp             SCCTTTCSEEEEEEECSS
T ss_pred             cccccccccEEEEEecCC
Confidence            999999999999887543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.36  E-value=0.00038  Score=60.21  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             eeeecCceEEEEEEeeccCCceEEEEecC--Cee---e--ec-----CCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        379 VGVPIGRTATLECEVEAFPLSVRYWEFID--GTL---I--EH-----DGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l---~--~~-----~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +.|.+|++|+|.|.... ....+.|++..  ..+   .  ..     ...++++....   ......|.|.+++.+|+|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDT---SKKSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBG---GGTBCCBCCSSCCSTTCSC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccC---cceecccCcCCCCcccCEE
Confidence            56889999999998754 34579998732  111   0  00     01111111111   1123469999999999999


Q ss_pred             EEEEEEeCCce
Q psy12803        447 YRCISKNEVDI  457 (902)
Q Consensus       447 YtC~A~N~~G~  457 (902)
                      |.|.+....|.
T Consensus        79 YyCA~~~~~g~   89 (96)
T d1ymmd1          79 YFCATDTTSGT   89 (96)
T ss_dssp             CEEEEEETTSC
T ss_pred             EeEeEecCCCC
Confidence            99998766553

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.36  E-value=0.00091  Score=59.26  Aligned_cols=70  Identities=14%  Similarity=0.317  Sum_probs=45.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--c--cc-c---------CC-cccee----ccCCcEEEEeeeeec
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--P--IT-L---------GS-WKDSA----VASSTLNFTRINRIN  357 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~--~~-~---------~~-~~~~~----~~~~sL~I~~Vt~~D  357 (902)
                      .|..+++.+|++|+|.|..... ...+.|||....  +  +. .         .. .....    .....|.|.+++.+|
T Consensus         4 sP~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            3556789999999999997643 357999984321  1  00 0         00 01111    122479999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|.+..
T Consensus        83 sa~YyCA~~~   92 (112)
T d2cdeb1          83 TSQYLCASSE   92 (112)
T ss_dssp             CSEEEEEEEC
T ss_pred             cccEEEEEec
Confidence            9999997753

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.0039  Score=54.18  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      ..++.++|.|.+.++ |. ..|+|..++...    ..........++.|...+.|.|..-... .+.|+|.|........
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~----~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS----GVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK   92 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCT----TEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccC----CeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence            357789999999986 43 379995544221    1111112234566777888998877653 5689999998766544


Q ss_pred             EE
Q psy12803        460 GS  461 (902)
Q Consensus       460 ~s  461 (902)
                      ..
T Consensus        93 v~   94 (102)
T d1mjuh2          93 VD   94 (102)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.002  Score=56.00  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.......++.++|.|.+.++ |.. .|.|++++..+.. ...........++.|...+.|.|..-.....-.
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~-~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA-GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCS-SEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCC-CEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            4555553322222346779999999986 533 7999887765432 111111223456778888899987655444457


Q ss_pred             EEEEEEeCCce
Q psy12803        447 YRCISKNEVDI  457 (902)
Q Consensus       447 YtC~A~N~~G~  457 (902)
                      |+|.+......
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999987543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.31  E-value=0.011  Score=50.59  Aligned_cols=78  Identities=17%  Similarity=0.087  Sum_probs=50.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+.. .|..|++|+|.|...- ....+.+++++.......    ......  .....+.+.|.+|+.+|+|.|+
T Consensus         2 KPsLsa~P~~-~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~----~~~~~~--~~~~~a~F~l~~v~~~~~G~Y~   73 (96)
T d1nkra1           2 KPSLLAHPGP-LVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR----LIGEHH--DGVSKANFSISRMTQDLAGTYR   73 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE----EECEEE--TTEEEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEECCCC-CCCEEEEEECCCcCCcee----eeeeec--CCceEEEEEEcccCcccCeEEE
Confidence            5777777754 4889999999998642 345677877765321100    000000  1123456999999999999999


Q ss_pred             EEEEeC
Q psy12803        449 CISKNE  454 (902)
Q Consensus       449 C~A~N~  454 (902)
                      |.-...
T Consensus        74 C~y~~~   79 (96)
T d1nkra1          74 CYGSVT   79 (96)
T ss_dssp             EEEEBT
T ss_pred             EEEEcC
Confidence            987544

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0017  Score=57.55  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=44.7

Q ss_pred             cEEEEcCCeEEEEEecCCC--CCCceEEecCC--Cc---ccccCC----------ccceeccC-----CcEEEEeeeeec
Q psy12803        300 PIVVREGDNVRLRCVATGH--PKPSIIWKTSE--NK---PITLGS----------WKDSAVAS-----STLNFTRINRIN  357 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~--~~---~~~~~~----------~~~~~~~~-----~sL~I~~Vt~~D  357 (902)
                      .+++.+|++|+|.|..++.  ..-.+.|+|..  ..   ++....          .+..+..+     -+|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4678999999999998752  34567899842  21   111110          11222211     259999999999


Q ss_pred             CceeEEeecC
Q psy12803        358 MGAYMCLADN  367 (902)
Q Consensus       358 sG~YtC~A~N  367 (902)
                      +|.|.|....
T Consensus        84 sa~YyCa~~~   93 (110)
T d1u9ka_          84 SGLYRCVIYH   93 (110)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            9999998754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0016  Score=55.99  Aligned_cols=29  Identities=21%  Similarity=0.576  Sum_probs=24.5

Q ss_pred             EcCCeEEEEEecCC-CCCCceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HPKPSIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~  332 (902)
                      ..++.++|.|.+.| +|.+.|+|++++..+
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~   43 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEEL   43 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEe
Confidence            35788999999998 799999999977654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.018  Score=48.87  Aligned_cols=79  Identities=18%  Similarity=0.349  Sum_probs=52.0

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      ||.+.+...   ...|+.++|.|.+.++ |. ..|+|.+++..+.  ...........++++...+.|.+.   ..|...
T Consensus         3 PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~--~~~~~~~~~~~~~t~~~~s~l~~~---~~~~~~   74 (94)
T d1t7va1           3 PPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQE--PELRGDVLHNGNGTYQSWVVVAVP---PQDTAP   74 (94)
T ss_dssp             CCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECC--CSEEEEEEETTTTEEEEEEEEEEC---TTCCSC
T ss_pred             CCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECC--CcEEeeeecCCCCeEEEEEEeEeC---CCCCCE
Confidence            455554222   2357899999999986 54 4799988776542  223333445666677777777765   445568


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |+|++....
T Consensus        75 ytC~V~H~s   83 (94)
T d1t7va1          75 YSCHVQHSS   83 (94)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.24  E-value=0.004  Score=53.73  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=46.9

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+.. ....++..+|.|.+.++ |. ..|+|++++..+... -.........+++|...+.|.+   ..++...
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgtf~~~s~l~~---~~~~~~~   78 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTG-VVSTGLIQNGDWTFQTLVMLET---VPRSGEV   78 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSS-EEECCCEECSSSCEEEEEEEEC---CCCTTCE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCC-CEECeEEeCCCcEEEEEEEeeE---cCCCCCE
Confidence            4666553332 23446778899999986 43 379998877655321 0111122345566666666654   4667779


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|+|....-
T Consensus        79 ytC~V~H~sl   88 (98)
T d1d5mb1          79 YTCQVEHPSV   88 (98)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEECCC
Confidence            9999987643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0017  Score=56.47  Aligned_cols=65  Identities=15%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcccccCCccceeccCCcE---EEEeeeeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKPITLGSWKDSAVASSTL---NFTRINRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL---~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..|+.++|.|.+.| .| ...|+|.+++..+............+++.   ....+..+|.+.|+|++..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H   85 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNH   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEEC
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEe
Confidence            356899999999999 34 45799999876543211112222333332   2223344566677777655

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.22  E-value=0.0057  Score=52.78  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+.. .|..|++|+|.|...- +...+.|+|++......    ........    ....+.|..+...|+|.|+
T Consensus         6 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~----~~~~~~~~----~~~~f~~~~~~~~~~G~Y~   75 (99)
T d1nkra2           6 KPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR----LPAGPKVN----GTFQADFPLGPATHGGTYR   75 (99)
T ss_dssp             CCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE----EECEEEET----TEEEEEEEEEECCSCEEEE
T ss_pred             CCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccE----EEccccCC----ccEEEEEeccccccCEEEE
Confidence            5777777754 5889999999997643 45678888876432111    00000111    1234678888889999999


Q ss_pred             EEEEeCC
Q psy12803        449 CISKNEV  455 (902)
Q Consensus       449 C~A~N~~  455 (902)
                      |.-....
T Consensus        76 C~y~~~~   82 (99)
T d1nkra2          76 CFGSFHD   82 (99)
T ss_dssp             EEEEETT
T ss_pred             EEeecCC
Confidence            9876543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.22  E-value=0.0044  Score=53.22  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             cCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .++.++|.|.+.++ |.. .|+|++++..+..  ..........+++|...+.|.|..   +|...|+|++....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~--~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQG--TQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTT--CEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCC--ceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            45689999999986 654 8999887654321  111123456677888888899875   34557999998754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.21  E-value=0.0029  Score=57.02  Aligned_cols=67  Identities=21%  Similarity=0.325  Sum_probs=43.9

Q ss_pred             cEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc--cc-----------c--CCccceec--cC---CcEEEEeeee
Q psy12803        300 PIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP--IT-----------L--GSWKDSAV--AS---STLNFTRINR  355 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~--~~-----------~--~~~~~~~~--~~---~sL~I~~Vt~  355 (902)
                      .+++.+|++|+|.|.++|..  ...+.|+|..  ..+  +.           .  ...+....  ..   ..|.|.+++.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            47788999999999988732  4468999842  111  10           0  01112111  11   2599999999


Q ss_pred             ecCceeEEeec
Q psy12803        356 INMGAYMCLAD  366 (902)
Q Consensus       356 ~DsG~YtC~A~  366 (902)
                      +|++.|.|.+.
T Consensus        90 ~Dsa~YyCA~~  100 (123)
T d1hxmb1          90 QDIATYYCALW  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccCcEEEEeee
Confidence            99999999753

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.20  E-value=0.0026  Score=55.30  Aligned_cols=71  Identities=23%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .++.++|.|.+.++ |. ..|+|.+++.....  ..........++.|...|.|.|..-.-...-.|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~--~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELN--YKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSS--EEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccC--cEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            57789999999986 64 47999887754321  11111123456678888889987655444557999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.20  E-value=0.0094  Score=53.00  Aligned_cols=72  Identities=19%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             eeeecCceEEEEEEeeccCC--ceEEEEecC--Cee--e---ecC---------CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        379 VGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      -.+..|++++|.|.+.|+..  -.+.|++..  ..+  +   ..+         ..++.+..+....   +..|.|.+++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~---~~~L~i~~L~   85 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKN---TAYLQMDSLK   85 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTT---EEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCc---ceecccccCC
Confidence            35788999999999998753  357897653  111  1   111         1234444333222   4569999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12803        441 ISDFDTYRCISKN  453 (902)
Q Consensus       441 ~~DsG~YtC~A~N  453 (902)
                      .+|++.|.|....
T Consensus        86 ~eDtA~YYCAr~~   98 (119)
T d1kxvc_          86 PDDTAMYYCKPSL   98 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCcceEeeeecc
Confidence            9999999996544

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0031  Score=54.71  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .++.++|.|.+.++ |. ..|+|++++.....  ..........+++|...+.|.|..-.....-.|+|.|....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~--~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENN--YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECC--EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCC--eEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999986 54 38999888765422  11111233556778888899998755444457999998864

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0059  Score=52.85  Aligned_cols=73  Identities=14%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      ..++.++|.|.+.++ |. ..|.|..++....    .........++.+...+.|.|..-.. +.+.|+|.|........
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~----~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~~   92 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSG----VLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSSTA   92 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTT----EEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCccc----ceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCee
Confidence            457899999999985 53 4799976553321    11111112356677888899876654 35789999998765443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.019  Score=47.25  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             ceeeeecCceEEEEEEeecc-CCceEEEEecCCeee---ec-CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        377 RRVGVPIGRTATLECEVEAF-PLSVRYWEFIDGTLI---EH-DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~l~---~~-~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      ....+..|+...|+|.+.-- -.|.++|-+.++..-   .. ...........+-   ....|.+..+-.+|.|.|+|.|
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~ni---s~FvLhF~pvl~sDnGsYrCSa   87 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV---PVFVLHFKPIHLSDNGSYSCST   87 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSS---CEEEEEETTCCGGGCEEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCe---eEEEEEeeeeeecCCCceEEec
Confidence            34567889999999999744 578999988776431   11 1222222222222   2446999999999999999999


Q ss_pred             EeCCcee-EEEEEEEe
Q psy12803        452 KNEVDIA-KGSLILFE  466 (902)
Q Consensus       452 ~N~~G~~-~~s~~L~V  466 (902)
                      .-..+.. +.++.|.|
T Consensus        88 nf~s~vieSHSvti~V  103 (104)
T d1xaua_          88 NFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             CCChhheecceEEEEe
Confidence            7655544 34444443

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.16  E-value=0.014  Score=52.05  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             eeeeecCceEEEEEEeeccC----CceEEEEecC--Ce--eee---cC---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        378 RVGVPIGRTATLECEVEAFP----LSVRYWEFID--GT--LIE---HD---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~--~~--l~~---~~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ...+.+|++|+|.|.+.|+.    ...+.|++..  ..  .+.   ..         ..++.+......   .+..|.|.
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~---~~~~L~i~   85 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASK---KQVVLTLT   85 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTT---TEEEEEEE
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceeccccc---ceeeeeEE
Confidence            34578899999999998753    2468898642  21  111   00         123443332222   14569999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy12803        438 NVNISDFDTYRCISK  452 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~  452 (902)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          86 NLDPVDTATYYCART  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeeccceEEeeEec
Confidence            999999999999643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.12  E-value=0.0022  Score=56.75  Aligned_cols=69  Identities=20%  Similarity=0.307  Sum_probs=46.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--cccc---c---C--------Cccc--eeccCCcEEEEeeeeecC
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPIT---L---G--------SWKD--SAVASSTLNFTRINRINM  358 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~~---~---~--------~~~~--~~~~~~sL~I~~Vt~~Ds  358 (902)
                      .|..+.+.+|++|+|.|.....-...+.|||...  .+..   .   .        ..+.  ....+..|.|..++.+|+
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            3556778999999999998765556799998632  2110   0   0        0011  112345799999999999


Q ss_pred             ceeEEee
Q psy12803        359 GAYMCLA  365 (902)
Q Consensus       359 G~YtC~A  365 (902)
                      +.|.|.+
T Consensus        87 a~Y~Ca~   93 (112)
T d1fo0b_          87 RTLYCTC   93 (112)
T ss_dssp             EEEEEEE
T ss_pred             ccEEEEE
Confidence            9999975

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0032  Score=54.57  Aligned_cols=71  Identities=20%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.++|.|.+.++ |. ..|.|.+++..+...  .........+++|...+.|.|..-.......|+|.|....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~--~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENY--KNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSE--EECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCc--EEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45679999999986 63 479998877654221  1111233556778888999987655445568999998753

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0054  Score=54.55  Aligned_cols=79  Identities=15%  Similarity=0.058  Sum_probs=47.1

Q ss_pred             cCceeeeecCceEEEEEEeeccCCc---eEEEEecCCe----eee---cCCceEEEeec---CCCceeeEeEEEEeccCC
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLS---VRYWEFIDGT----LIE---HDGVKYSISDV---DKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~~~~----l~~---~~~~~~~~~~~---~~~s~~~~stL~I~~V~~  441 (902)
                      .|..+.+.+|++|+|.|.....-..   .+.|++....    ++.   ...........   ..........|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3556778899999999998544322   5889875421    110   00000000000   001112245799999999


Q ss_pred             CCCeEEEEEEEe
Q psy12803        442 SDFDTYRCISKN  453 (902)
Q Consensus       442 ~DsG~YtC~A~N  453 (902)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998765

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.011  Score=50.88  Aligned_cols=79  Identities=15%  Similarity=0.116  Sum_probs=46.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+..+ |..|++|+|.|.... ....+.++|++......   ....  .........+.+.|.+|+.+|+|.|+
T Consensus         4 kPsLsa~P~~~-v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~---~~~~--~~~~~~~~~a~F~l~~v~~~~~G~Y~   76 (98)
T d1ugna2           4 KPTLSAQPSPV-VNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQ---CLNS--QPHARGSSRAIFSVGPVSPSRRWWYR   76 (98)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECSS-CCSEEEEEEC------C---EEEC--------CCEEEEEECCCCTTSCEEEE
T ss_pred             CCEEEeeCCCc-cCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcE---eeee--EEcCCCceEEEEEeeecccCCCeEEE
Confidence            57777777654 899999999997632 23456665655432110   0000  00001112456999999999999999


Q ss_pred             EEEEeC
Q psy12803        449 CISKNE  454 (902)
Q Consensus       449 C~A~N~  454 (902)
                      |.-...
T Consensus        77 C~y~~~   82 (98)
T d1ugna2          77 CYAYDS   82 (98)
T ss_dssp             EEEECT
T ss_pred             EeeEcC
Confidence            987544

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0021  Score=55.61  Aligned_cols=29  Identities=28%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      ..|+.++|.|.+.| .| ...|+|++++..+
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~   46 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKI   46 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeec
Confidence            46888999999999 44 4579999987654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.02  E-value=0.0041  Score=56.21  Aligned_cols=88  Identities=17%  Similarity=0.269  Sum_probs=55.8

Q ss_pred             CCCEEEE-cCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeec---CCceE-EEeecCCCceeeEeEEEEeccC
Q psy12803        368 VPPQILI-RNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEH---DGVKY-SISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       368 ~~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~---~~~~~-~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ++|.+.+ .+....+..+..++|.|.+.++ |. ..|+|++++..+...   ..... ......+++|...|.|.|..-.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            3666665 3333344557889999999986 43 378998877655321   00000 1112345678888899998766


Q ss_pred             CCCCe-EEEEEEEeCC
Q psy12803        441 ISDFD-TYRCISKNEV  455 (902)
Q Consensus       441 ~~DsG-~YtC~A~N~~  455 (902)
                      -.+.| .|+|.|....
T Consensus        83 W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             HTCTTCEEEEEEEECC
T ss_pred             hCCCCCEEEEEEEECC
Confidence            56656 7999998753

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.02  E-value=0.013  Score=49.85  Aligned_cols=82  Identities=16%  Similarity=0.299  Sum_probs=50.3

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+....   .....++|.|.+.++ |. ..|+|.+++..+..............++++...+.|.+..   +|...
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~   76 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQR   76 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGG
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCE
Confidence            5666552221   234578999999987 54 3799998876654322211122234556777777787763   33447


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|.+.....
T Consensus        77 ytC~V~H~~~   86 (94)
T d1hyrc1          77 FTCYMEHSGN   86 (94)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCC
Confidence            9999987543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0026  Score=54.76  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=48.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR  448 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt  448 (902)
                      +|.+...+.. .|..|++|+|.|... .+...+.+++++.........   .....     ..+.+.|.+|+.+|+|.|+
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~---~~~~~-----~~a~F~i~~v~~~~~G~Y~   73 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI---PQELV-----KKGQFPIPSITWEHTGRYR   73 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS---CHHHH-----TTTEEEESSCCGGGCEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc---cCCCC-----CEEEEEEEecCHHHCCeEE
Confidence            5777777764 488999999999863 344566777765432110000   00000     1234999999999999999


Q ss_pred             EEEEeC
Q psy12803        449 CISKNE  454 (902)
Q Consensus       449 C~A~N~  454 (902)
                      |.....
T Consensus        74 C~y~~~   79 (96)
T d1ugna1          74 CYYGSD   79 (96)
T ss_dssp             EEEEET
T ss_pred             EEEeCC
Confidence            987543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.95  E-value=0.0058  Score=52.55  Aligned_cols=82  Identities=20%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+... ...++.++|.|.+.++ | ...|+|.+++..+.. ...........+++|...+.|.+.   .++...
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~-~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~   76 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETA-GVVSTPLIRNGDWTFQILVMLEMT---PQRGDV   76 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECT-TEEECCCEECSSSCEEEEEEEECC---SCTTCC
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCC-CcEeceeecCCCceEEEEEEeccC---CCCCCE
Confidence            46666543322 3456778999999987 4 347999888765432 111111233556677777777763   455678


Q ss_pred             EEEEEEeCC
Q psy12803        447 YRCISKNEV  455 (902)
Q Consensus       447 YtC~A~N~~  455 (902)
                      |+|++....
T Consensus        77 ytC~V~H~s   85 (97)
T d1uvqb1          77 YTCHVEHPS   85 (97)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.95  E-value=0.012  Score=52.23  Aligned_cols=69  Identities=25%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee--e---ecC---------CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ..+..|++++|.|.+.|+...  .+.|++..  ..+  +   ...         ..++.+..+....   +..|.|.+++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~n---t~~L~i~~l~   86 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKN---QFSLKLSSVT   86 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTT---EEEEEECSCC
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchh---eecccccccc
Confidence            357889999999999987644  57787642  111  1   111         1234444332222   3459999999


Q ss_pred             CCCCeEEEEE
Q psy12803        441 ISDFDTYRCI  450 (902)
Q Consensus       441 ~~DsG~YtC~  450 (902)
                      .+|++.|.|.
T Consensus        87 ~eDtA~YYCA   96 (120)
T d1dn0b1          87 AADTAVYYCA   96 (120)
T ss_dssp             GGGCEEEEEE
T ss_pred             cccccEEEEE
Confidence            9999999994

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0087  Score=53.09  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=40.5

Q ss_pred             EEEEcCCeEEEEEecCCCCCC--c-eEEecCCCcccc------c--------CCc--cceec-cC--CcEEEEeeeeecC
Q psy12803        301 IVVREGDNVRLRCVATGHPKP--S-IIWKTSENKPIT------L--------GSW--KDSAV-AS--STLNFTRINRINM  358 (902)
Q Consensus       301 v~v~eGe~v~L~C~a~G~P~p--~-v~W~k~~~~~~~------~--------~~~--~~~~~-~~--~sL~I~~Vt~~Ds  358 (902)
                      ..+.+|++|+|.|..++....  . +.|++.......      .        ...  +.... ..  .+|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            557789999999998753322  2 345554322110      0        001  11111 11  2699999999999


Q ss_pred             ceeEEeecC
Q psy12803        359 GAYMCLADN  367 (902)
Q Consensus       359 G~YtC~A~N  367 (902)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.86  E-value=0.0045  Score=53.69  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      ..+.++|.|.+.++ |. ..|+|.+++.....  ..........++.+...|.|.|..-.......|+|+|....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~--~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN--YKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSS--EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccC--cEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            35689999999877 43 47999888764421  11111223456777888889998766555668999998753

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.012  Score=51.95  Aligned_cols=70  Identities=26%  Similarity=0.347  Sum_probs=46.0

Q ss_pred             eeeecCceEEEEEEeeccCC--ceEEEEecC--Cee--e---ecC---------CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        379 VGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ..+..|++++|+|.+.|...  -.+.|++.-  ..+  +   ...         ..++.+..+....   +..|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n---~~~L~~~sL~   86 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKS---QVFLKMNSLQ   86 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTT---EEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccc---eeeccccccc
Confidence            45788999999999998764  357887642  111  0   011         1244444333222   3459999999


Q ss_pred             CCCCeEEEEEE
Q psy12803        441 ISDFDTYRCIS  451 (902)
Q Consensus       441 ~~DsG~YtC~A  451 (902)
                      .+|++.|.|..
T Consensus        87 ~eDtAvYYCAr   97 (117)
T d1c5db1          87 TEDTAIYFCTR   97 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceEEEEec
Confidence            99999999954

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.84  E-value=0.00083  Score=58.82  Aligned_cols=86  Identities=19%  Similarity=0.246  Sum_probs=54.1

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+.+....-..++.++|.|.+.++ |. ..|.|.+++..+...  .........++.|...+.|.|..-..++...
T Consensus         5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~--~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~   82 (104)
T d1nfde2           5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG--VKTTKPSKQGQNYMTSSYLSLTADQWKSHNR   82 (104)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS--CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSC
T ss_pred             CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCC--EEeccccCCCceEEEEEEEEEcHHHcCCCCE
Confidence            4555543322212246779999999985 54 389999887766422  1111223345567777888887766556668


Q ss_pred             EEEEEEeCCc
Q psy12803        447 YRCISKNEVD  456 (902)
Q Consensus       447 YtC~A~N~~G  456 (902)
                      |+|.|.....
T Consensus        83 ytC~V~H~~~   92 (104)
T d1nfde2          83 VSCQVTHEGE   92 (104)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEEECCC
Confidence            9999988654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.83  E-value=0.0059  Score=53.42  Aligned_cols=85  Identities=20%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             CCEEEEc-CceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803        369 PPQILIR-NRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD  445 (902)
Q Consensus       369 ~P~i~~~-p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG  445 (902)
                      +|.+.+. +....+.....++|.|.+.++ |. ..|.|++++..+..  ..........++.+...+.|+|..-...  -
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~--~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~   83 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTIL--GSQEGNTMKTNDTYMKFSWLTVPEKSLD--K   83 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCC--CCEECCCEECSSSEEEEEEEEECTGGGG--S
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccC--CEEccceecCCCeEEEEEEEEEecccCC--C
Confidence            4554443 333445567889999999986 43 37899988776532  2222222334566777888888654332  2


Q ss_pred             EEEEEEEeCCce
Q psy12803        446 TYRCISKNEVDI  457 (902)
Q Consensus       446 ~YtC~A~N~~G~  457 (902)
                      .|+|.|......
T Consensus        84 ~ytC~V~H~s~~   95 (107)
T d1hxmb2          84 EHRCIVRHENNK   95 (107)
T ss_dssp             CEEEEEEETTSG
T ss_pred             eEEEEEEECCCC
Confidence            699999886543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.82  E-value=0.014  Score=51.52  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-c---------CCceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-H---------DGVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~---------~~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++|+|+|.+.|+...  .+.|++..  ..+     +. .         -..++.+..+....   +..|.|.+
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~---t~~L~i~~   85 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTN---IAYMELSS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccc---eEEEeecc
Confidence            3457889999999999987543  57887642  211     11 1         11233443332222   34599999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPD  100 (117)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cCcCcceEEEEeEcC
Confidence            999999999997644

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.76  E-value=0.0056  Score=54.74  Aligned_cols=70  Identities=16%  Similarity=0.356  Sum_probs=43.6

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC----CCceEEecCC--Cccc--c----cC--------CccceeccC-----CcEEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTSE--NKPI--T----LG--------SWKDSAVAS-----STLNFT  351 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~--~~~~--~----~~--------~~~~~~~~~-----~sL~I~  351 (902)
                      ++....++.|++|+|.|.+.|..    ...+.|+|..  +.+.  .    ..        ..+.....+     ..|.|.
T Consensus         6 qsg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~   85 (120)
T d2agjh1           6 ESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLT   85 (120)
T ss_dssp             CCCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEE
T ss_pred             eECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEE
Confidence            33344578899999999987632    2457899742  1111  0    00        112222211     259999


Q ss_pred             eeeeecCceeEEeec
Q psy12803        352 RINRINMGAYMCLAD  366 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~  366 (902)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          86 NLDPVDTATYYCART  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeeccceEEeeEec
Confidence            999999999999643

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.013  Score=51.85  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=41.4

Q ss_pred             eeeecCceEEEEEEeeccC--CceEE-EEecCCe----ee--ecC--------CceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        379 VGVPIGRTATLECEVEAFP--LSVRY-WEFIDGT----LI--EHD--------GVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P--~P~v~-W~k~~~~----l~--~~~--------~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      ..+.+|++|+|.|.....-  ...+. |++....    +.  ...        ..+++.......   ...+|+|.+++.
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~   86 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGN---ESVTFYLQNLYV   86 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECS---SEEEEEEESCCG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCC---CeEEEEECCCCc
Confidence            3467899999999987553  23333 4443221    11  000        111111111111   134699999999


Q ss_pred             CCCeEEEEEEEe
Q psy12803        442 SDFDTYRCISKN  453 (902)
Q Consensus       442 ~DsG~YtC~A~N  453 (902)
                      +|+|.|.|.+..
T Consensus        87 ~DsavYyCa~~~   98 (118)
T d1yjdc1          87 NQTDIYFCKIEV   98 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCeEEEEEEec
Confidence            999999998754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.66  E-value=0.023  Score=50.16  Aligned_cols=72  Identities=19%  Similarity=0.203  Sum_probs=46.5

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee--e---ecC---------CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ..+..|++++|+|.+.|+...  .+.|++..  ..+  +   ...         ..++.+..+....   +..|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~---~~~L~i~~L~   86 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKN---QFSLRLSSVT   86 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTT---EEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchh---hhhccccccc
Confidence            457889999999999987543  57787642  111  0   111         1233343322222   4569999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12803        441 ISDFDTYRCISKN  453 (902)
Q Consensus       441 ~~DsG~YtC~A~N  453 (902)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (116)
T d7fabh1          87 AADTAVYYCARNL   99 (116)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEeeeec
Confidence            9999999996533

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.62  E-value=0.018  Score=50.85  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             eeeecCceEEEEEEeeccC--CceEEEEec--CCeee-----e-cCC---------ceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFP--LSVRYWEFI--DGTLI-----E-HDG---------VKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P--~P~v~W~k~--~~~l~-----~-~~~---------~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+.  .-.+.|++.  +..+.     . ...         .++.+.......   +..|.|.++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~---t~~L~i~~l   86 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSS---TAFMHLNSL   86 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTT---EEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCce---eeEeeeeec
Confidence            4578899999999999874  335788754  22221     1 111         133333322221   345999999


Q ss_pred             CCCCCeEEEEEE
Q psy12803        440 NISDFDTYRCIS  451 (902)
Q Consensus       440 ~~~DsG~YtC~A  451 (902)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (115)
T d1f3dh1          87 TFEDSAVYYCAN   98 (115)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcCCcEEEEEec
Confidence            999999999953

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.61  E-value=0.0071  Score=53.94  Aligned_cols=70  Identities=24%  Similarity=0.392  Sum_probs=44.2

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecC--CCcc--c---ccC----------Cccceec--cC---CcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTS--ENKP--I---TLG----------SWKDSAV--AS---STLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~--~~~~--~---~~~----------~~~~~~~--~~---~sL~I~~  352 (902)
                      ++....++.|++|+|.|.++|..  .-.+.|+|.  ++.+  +   ...          ..+..+.  ..   ..|.|++
T Consensus         6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~   85 (119)
T d1qnzh_           6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSR   85 (119)
T ss_dssp             EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecc
Confidence            44455788999999999998743  335889874  1111  0   000          0111111  11   1499999


Q ss_pred             eeeecCceeEEeec
Q psy12803        353 INRINMGAYMCLAD  366 (902)
Q Consensus       353 Vt~~DsG~YtC~A~  366 (902)
                      ++.+|++.|.|...
T Consensus        86 L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          86 LTSDDSAVYYCAIH   99 (119)
T ss_dssp             ECGGGCEEEEEEEC
T ss_pred             cCccceeEEEEEEe
Confidence            99999999999643

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0081  Score=52.05  Aligned_cols=82  Identities=18%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             EEEcCceeeeecCceEEEEEEeecc-CC---ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        372 ILIRNRRVGVPIGRTATLECEVEAF-PL---SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       372 i~~~p~~~~v~~G~~v~L~C~a~g~-P~---P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +...|....+..+..++|.|.+.++ |.   ..+.|.+++......  .........++.+...+.|.|..-.......|
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~--~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~   81 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNH--STRKEEKQRNGTLTVTSTLPVGTRDWIEGETY   81 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCC--CEEEEEEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceeccc--EEcccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            3445555556678889999999986 54   256787777655332  22233345567777888888765544445689


Q ss_pred             EEEEEeCC
Q psy12803        448 RCISKNEV  455 (902)
Q Consensus       448 tC~A~N~~  455 (902)
                      +|+|.+..
T Consensus        82 tC~V~H~~   89 (103)
T d1fp5a1          82 QCRVTHPH   89 (103)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99998864

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.031  Score=45.38  Aligned_cols=58  Identities=14%  Similarity=0.216  Sum_probs=40.5

Q ss_pred             ecCceEEEEEEeeccCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803        382 PIGRTATLECEVEAFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN  453 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N  453 (902)
                      ..|..+.|+|.....+.+  --.|.|++..+.......            ..+.+.|..  .+++|.|.|+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~------------~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------------QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC------------SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC------------CceEEEEec--CCCCceEEEEEcC
Confidence            568889999999876544  467999887775432211            123477765  7899999999653

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.011  Score=51.25  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=48.0

Q ss_pred             cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803        383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK  459 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~  459 (902)
                      .+..++|.|.+.++ |. ..|+|..++...   ...........++.|...+.|.|..-... ...|+|.+........
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~---~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   93 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTS---GVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTK   93 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCT---TEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCC---CEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEE
Confidence            46789999999887 43 379996554321   11111223356677888889998865542 3579999998766543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.53  E-value=0.028  Score=49.76  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=46.9

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|.|.+.|+...  .+.|++..  ..+     +. ..         ..++.+..+....   +..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~n---t~yLqm~s   85 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTD---TGYLELSS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCce---EEEeeeec
Confidence            3457889999999999987644  57887642  111     11 11         1234444333222   34599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.51  E-value=0.02  Score=50.62  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=46.5

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|.|.+.|+...  .+.|++..  ..+     +. ..         ..++.+..+...   .+..|.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~---~tvyL~~~~   85 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSA---STAYLQINS   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGG---TEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCc---eeEEeeeee
Confidence            3457899999999999987633  57887642  111     11 11         123334332221   234599999


Q ss_pred             cCCCCCeEEEEEEEeC
Q psy12803        439 VNISDFDTYRCISKNE  454 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~  454 (902)
                      ++.+|++.|.| |+..
T Consensus        86 L~~eDtAvYYC-Ar~~  100 (118)
T d1nlbh1          86 LKNEDTATYFC-ARFL  100 (118)
T ss_dssp             CCGGGCEEEEE-EEEC
T ss_pred             cccCcceEEEE-eeeC
Confidence            99999999999 4443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.49  E-value=0.031  Score=49.32  Aligned_cols=74  Identities=19%  Similarity=0.310  Sum_probs=48.0

Q ss_pred             ceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ....+..|++++|.|.+.|+...  .+.|++..  ..+     +. ..         ..++.+..+....   +..|.|.
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~---t~~L~m~   83 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSN---TAYLELS   83 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTT---EEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCce---eEeeccc
Confidence            34567889999999999987643  57887642  111     11 11         1234443332222   3459999


Q ss_pred             ccCCCCCeEEEEEEEe
Q psy12803        438 NVNISDFDTYRCISKN  453 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N  453 (902)
                      +++.+|++.|.|....
T Consensus        84 sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          84 SLTSEDSAVYYCARSS   99 (117)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccCCCcceEEEEeecc
Confidence            9999999999996543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.49  E-value=0.036  Score=48.99  Aligned_cols=75  Identities=23%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Ceee-----e-cC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTLI-----E-HD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l~-----~-~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+...  .+.|++.-  ..+.     . ..         ..++.+..+...   .+..|.|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~---nt~~L~~~sL   86 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAK---NSLYLQMSKV   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSS---CEEEEEECSC
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCcc---ceeecccccc
Confidence            457889999999999988644  57787542  1110     1 11         123344433222   2456999999


Q ss_pred             CCCCCeEEEEEEEeCCc
Q psy12803        440 NISDFDTYRCISKNEVD  456 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~~G  456 (902)
                      +.+|++.|.|......+
T Consensus        87 ~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          87 RSEDTALYYCARLHYYG  103 (118)
T ss_dssp             CGGGCEEEEEEEEETTT
T ss_pred             CCCcceEEEeeEecCCC
Confidence            99999999997665443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.012  Score=48.46  Aligned_cols=68  Identities=15%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             cEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCC---cccee-ccCC-----cEEEEeeeeecCceeEEeecC
Q psy12803        300 PIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGS---WKDSA-VASS-----TLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       300 ~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~---~~~~~-~~~~-----sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..++..|+.+.|.|.+.- .-+|.++|-|.++..-..-.   ..... ..+.     .|.+..+-.+|.|.|+|.|.-
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            357889999999999875 45789999997776432221   11111 1111     577788999999999999854

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.48  E-value=0.015  Score=51.80  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=44.9

Q ss_pred             eeeecCceEEEEEEeeccC--CceEEEEec--CCee--e---ecC----------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFP--LSVRYWEFI--DGTL--I---EHD----------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P--~P~v~W~k~--~~~l--~---~~~----------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++|+|+|.+.|..  .-.+.|++.  +..+  +   ...          ..++.+.......   +..|.|.++
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~---~~~L~i~~L   86 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSS---TVYLEFSRL   86 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTT---EEEEEEEEE
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccc---eeeeeeccc
Confidence            3577899999999998764  335789864  2211  1   111          1233333322222   345999999


Q ss_pred             CCCCCeEEEEEE
Q psy12803        440 NISDFDTYRCIS  451 (902)
Q Consensus       440 ~~~DsG~YtC~A  451 (902)
                      +.+|++.|.|..
T Consensus        87 ~~eDsAvYYCA~   98 (119)
T d1qnzh_          87 TSDDSAVYYCAI   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CccceeEEEEEE
Confidence            999999999954

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=95.46  E-value=0.0058  Score=52.91  Aligned_cols=65  Identities=14%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcccccCC-ccceeccCCcE---EEEeeeeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKPITLGS-WKDSAVASSTL---NFTRINRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL---~I~~Vt~~DsG~YtC~A~N  367 (902)
                      +..|+.++|.|.+.| .| ...|+|++++..+..... .......+++.   ....+..++...|+|++..
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H   84 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEH   84 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEEC
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEE
Confidence            456889999999999 44 578999998766432111 11112233322   2223445666678887766

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.45  E-value=0.02  Score=50.67  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=46.4

Q ss_pred             CceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC-C--------ceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD-G--------VKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~-~--------~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +....+..|++++|.|.+.|+..-  .+.|++..  ..+     +. .. .        .++.+..+...   .+..|.|
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~---~t~~L~~   83 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSS---STAYMEL   83 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGG---TEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCc---ceEeecc
Confidence            334557899999999999988744  57887642  111     11 11 1        13333322221   2345999


Q ss_pred             eccCCCCCeEEEEEE
Q psy12803        437 SNVNISDFDTYRCIS  451 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A  451 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          84 ARLTSEDSAIYYCAR   98 (118)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccccCcceeeeEEE
Confidence            999999999999943

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.45  E-value=0.022  Score=50.27  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|.|.+.|+...  .+.|.+.-  ..+     +. ..         ..++.+..+...   .+..|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~---nt~yL~m~~   85 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSK---NTAYLQMNS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGG---TEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecccc---ceEEecccc
Confidence            3457889999999999987643  57787642  111     01 11         122333332221   234599999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          86 LRAEDTAVYYCARDT  100 (117)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCceEEEEeecC
Confidence            999999999996543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.45  E-value=0.034  Score=49.43  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+..-  .+.|++..  ..+     +. ..         ..++.+..+...   .+..|.|.++
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~---nt~~L~i~~L   86 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAK---NTLYLQMSSL   86 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcc---cccccceeee
Confidence            457789999999999987643  57887642  111     11 11         123333332221   2345999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|++.|.|.....
T Consensus        87 ~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          87 KSEDTAMYYCVRHEY  101 (123)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ccCcccceeEEecCC
Confidence            999999999976543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.43  E-value=0.026  Score=49.94  Aligned_cols=73  Identities=19%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             eeeeecCceEEEEEEeeccCCc---eEEEEec--CCeee-----ecC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS---VRYWEFI--DGTLI-----EHD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P---~v~W~k~--~~~l~-----~~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|+|.+.|+...   .+.|.+.  +..+.     ...         ..++.+..+....   +..|.|.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~n---t~~L~~~s   85 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKN---QFFLQLNS   85 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTT---EEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccc---eeeccccc
Confidence            3457889999999999998653   4678653  22211     111         1233343322222   34599999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|++.|.|...-
T Consensus        86 L~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          86 VTTEDTATYYCAGLL  100 (119)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCceEEEEeEec
Confidence            999999999996433

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.43  E-value=0.03  Score=49.76  Aligned_cols=72  Identities=13%  Similarity=0.247  Sum_probs=46.4

Q ss_pred             eeeeecCceEEEEEEeeccCC--ceEEEEecC--Ceee-----ecC----------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTLI-----EHD----------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l~-----~~~----------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|.|.+.+...  ..+.|++..  ..+.     ...          ..++.+.......   +..|.|.+
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n---~v~L~i~~   85 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSST---TAYIELVR   85 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcc---eEEccccc
Confidence            345788999999999998753  357897642  2211     111          1133333322222   34599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.40  E-value=0.025  Score=49.92  Aligned_cols=74  Identities=15%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             cCceeeeecCceEEEEEEeeccCC--ceEEEEec--CCeee-----ec-C---------CceEEEeecCCCceeeEeEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPL--SVRYWEFI--DGTLI-----EH-D---------GVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~--~~~l~-----~~-~---------~~~~~~~~~~~~s~~~~stL~  435 (902)
                      .+....+..|++++|.|.+.|+-.  -.+.|.+.  +..+.     .. .         ..++.+..+...+   +..|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~---~~~L~   82 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTT---TAYME   82 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTT---EEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCcc---EeEee
Confidence            344456788999999999998753  35678653  22221     10 1         1133333322222   34599


Q ss_pred             EeccCCCCCeEEEEEE
Q psy12803        436 ISNVNISDFDTYRCIS  451 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A  451 (902)
                      |.+++.+|++.|.|..
T Consensus        83 i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          83 LSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ecccCCCcceEEEEec
Confidence            9999999999999953

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.38  E-value=0.031  Score=50.49  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=45.9

Q ss_pred             eeeecCceEEEEEEeeccCC----ceEEEEecC--Cee--e---ecC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        379 VGVPIGRTATLECEVEAFPL----SVRYWEFID--GTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~----P~v~W~k~~--~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ..+..|++++|.|.+.|...    .-+.|++..  ..+  +   ...         ..++.+..+...   .+..|.|.+
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~---~~~~L~i~~   86 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSK---NQVVLVMTR   86 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTT---TEEEEEECS
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccc---cEEEccccc
Confidence            45788999999999987652    257898642  111  1   011         123333322221   135699999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|++.|.|....
T Consensus        87 l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          87 VSPVDTATYFCAHRR  101 (132)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccceEEEEEEec
Confidence            999999999997554

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.37  E-value=0.041  Score=48.46  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=46.6

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee------eecC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL------IEHD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l------~~~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|+++.|.|.+.|+...  .+.|++.-  ..+      ....         ..++.+..+....   +..|.|.+
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~---t~yLq~~~   85 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSS---IVYLQLNS   85 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccc---eeeecccc
Confidence            3457789999999999987544  57787632  111      1111         1234444333222   34599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          86 LTSEDSAVYSCSRG   99 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.35  E-value=0.029  Score=48.87  Aligned_cols=71  Identities=21%  Similarity=0.361  Sum_probs=46.5

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Ceee-----ec---C---------CceEEEeecCCCceeeEeEEEE
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTLI-----EH---D---------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l~-----~~---~---------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      ...+..|++++|+|.+.|+...  .+.|++..  ..+.     ..   .         ..++.+.......   +..|.|
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~---t~~L~i   85 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQS---MLYLQM   85 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTT---EEEEEE
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccc---eeEecc
Confidence            3467899999999999987644  67887542  1111     00   0         1134444333222   355999


Q ss_pred             eccCCCCCeEEEEEE
Q psy12803        437 SNVNISDFDTYRCIS  451 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A  451 (902)
                      .+++.+|++.|.|.-
T Consensus        86 ~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVR  100 (109)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cCCCHhHCEEEEEEE
Confidence            999999999999964

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.32  E-value=0.0067  Score=53.70  Aligned_cols=71  Identities=21%  Similarity=0.398  Sum_probs=45.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCC--CCCceEEecCC--Ccc-----cc-cC---------Cccceec--c-C--CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGH--PKPSIIWKTSE--NKP-----IT-LG---------SWKDSAV--A-S--STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~--~-~--~sL~I  350 (902)
                      +.++....++.|++|+|.|.++|.  ..-.+.|+|..  +.+     +. ..         ..+....  . .  ..|.|
T Consensus         4 L~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i   83 (115)
T d1f3dh1           4 LQQSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHL   83 (115)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeee
Confidence            445556678999999999999874  33458888741  111     00 00         0111111  1 1  14999


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          84 NSLTFEDSAVYYCAN   98 (115)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eecCcCCcEEEEEec
Confidence            999999999999954

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.011  Score=50.35  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=39.8

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCcccccCC--ccceeccCCc---EEEEeeeeecCceeEEeecC
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENKPITLGS--WKDSAVASST---LNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~~--~~~~~~~~~s---L~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..++.++|.|.|.| .| ...|+|++++..+.....  .......+++   .....+..+|...|+|++.+
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H   83 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEH   83 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEEC
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEe
Confidence            45778999999999 55 458999998766533211  1111222332   23334555666789998876

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.28  E-value=0.031  Score=49.62  Aligned_cols=74  Identities=12%  Similarity=0.236  Sum_probs=47.8

Q ss_pred             CceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +....+..|++++|+|.+.|+..-  .+.|++..  ..+     +...          ..++.+..+....   +..|.|
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~n---tvyL~~   84 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSAT---TAYMGL   84 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTT---EEEEEE
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcc---eeeecc
Confidence            344568899999999999988644  57887642  111     1111          1233343332222   345999


Q ss_pred             eccCCCCCeEEEEEEE
Q psy12803        437 SNVNISDFDTYRCISK  452 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~  452 (902)
                      .+++.+|++.|.|...
T Consensus        85 ~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          85 SSLRPEDTAVYYCARD  100 (122)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeec
Confidence            9999999999999654

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.28  E-value=0.026  Score=48.81  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             cCceEEEEEEeeccCCc--eEEEEecC--Cee------eec---------CCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803        383 IGRTATLECEVEAFPLS--VRYWEFID--GTL------IEH---------DGVKYSISDVDKGSYQYIMQLNISNVNISD  443 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l------~~~---------~~~~~~~~~~~~~s~~~~stL~I~~V~~~D  443 (902)
                      .|++++|+|.+.|+...  .+.|++..  ..+      ...         -..++.+.....   ..+..|.|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s---~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKP---SSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEecccc---ccEEEeeeeeccccc
Confidence            48899999999987543  58887542  111      001         012333333222   224569999999999


Q ss_pred             CeEEEEEEEeCC
Q psy12803        444 FDTYRCISKNEV  455 (902)
Q Consensus       444 sG~YtC~A~N~~  455 (902)
                      ++.|.|......
T Consensus        78 TAvYYCAr~~~~   89 (103)
T d1oari_          78 SAVYYCARMWYY   89 (103)
T ss_dssp             CSEEEEEEEECS
T ss_pred             cEEEEeEEECCC
Confidence            999999765443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.27  E-value=0.0089  Score=52.91  Aligned_cols=73  Identities=15%  Similarity=0.315  Sum_probs=46.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc--C-C--cEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA--S-S--TLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~--~-~--sL~I  350 (902)
                      +.++....++.|++|.|+|.++|..  .-.+.|+|..  +.+.      ...         ..+..+..  . +  .|.|
T Consensus         4 L~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i   83 (117)
T d1iqdb1           4 LVQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMEL   83 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEee
Confidence            3455567789999999999999853  3357888732  2110      000         11111111  1 1  4999


Q ss_pred             EeeeeecCceeEEeecC
Q psy12803        351 TRINRINMGAYMCLADN  367 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N  367 (902)
                      ++++.+|++.|.|....
T Consensus        84 ~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          84 SSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             CSCCGGGCEEEEEEECS
T ss_pred             cccCcCcceEEEEeEcC
Confidence            99999999999997543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.25  E-value=0.0088  Score=53.17  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=45.6

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cc-----ccc---------CCccceeccC-C----cEEEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KP-----ITL---------GSWKDSAVAS-S----TLNFTR  352 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~-----~~~---------~~~~~~~~~~-~----sL~I~~  352 (902)
                      .+...-.|+.|++++|+|.++|..  .-.+.|+|..-  .+     +..         -..+..+..+ +    .|.|.+
T Consensus         4 ~esg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~   83 (119)
T d1kxvc_           4 VESGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDS   83 (119)
T ss_dssp             EEECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECS
T ss_pred             eeECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceeccccc
Confidence            344556789999999999999844  34578987421  11     000         0012222211 1    599999


Q ss_pred             eeeecCceeEEeec
Q psy12803        353 INRINMGAYMCLAD  366 (902)
Q Consensus       353 Vt~~DsG~YtC~A~  366 (902)
                      ++.+|++.|.|...
T Consensus        84 L~~eDtA~YYCAr~   97 (119)
T d1kxvc_          84 LKPDDTAMYYCKPS   97 (119)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcCCcceEeeeec
Confidence            99999999999653

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=0.01  Score=51.42  Aligned_cols=81  Identities=12%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             EEcCceee-eecCceEEEEEEeecc-CC---ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803        373 LIRNRRVG-VPIGRTATLECEVEAF-PL---SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY  447 (902)
Q Consensus       373 ~~~p~~~~-v~~G~~v~L~C~a~g~-P~---P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y  447 (902)
                      +..|.... ...+.+++|.|.+.++ |.   ..|.|.+++..+...  .........++.|...|.|.|..-.-...-.|
T Consensus         4 l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~--~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~   81 (103)
T d1i1ca1           4 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA--QTHAPEKQSNSTLRSVSELPIVERDWLNGKTF   81 (103)
T ss_dssp             EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC--EECCCEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCC--EECCcEECCCCCEEEEEEEEECHHHhcCCCEE
Confidence            34443333 3457789999999875 54   378899888765432  11122335566777788888765443344469


Q ss_pred             EEEEEeCC
Q psy12803        448 RCISKNEV  455 (902)
Q Consensus       448 tC~A~N~~  455 (902)
                      +|.|....
T Consensus        82 tC~V~H~~   89 (103)
T d1i1ca1          82 KCKVNSGA   89 (103)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99998754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.25  E-value=0.03  Score=49.15  Aligned_cols=70  Identities=23%  Similarity=0.355  Sum_probs=45.8

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----e-ecC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----I-EHD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~-~~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+...  .+.|++..  ..+     + ...         ..++.+..+....   +..|.|.++
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~n---t~~L~~~~L   86 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQN---NLYLQLNSL   86 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccc---eeeeeeeee
Confidence            457899999999999987643  57787643  111     1 111         1234444332222   345999999


Q ss_pred             CCCCCeEEEEEE
Q psy12803        440 NISDFDTYRCIS  451 (902)
Q Consensus       440 ~~~DsG~YtC~A  451 (902)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999953

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=95.24  E-value=0.0073  Score=51.78  Aligned_cols=27  Identities=30%  Similarity=0.716  Sum_probs=21.5

Q ss_pred             cCCeEEEEEecCC-CCCC-ceEEecCCCc
Q psy12803        305 EGDNVRLRCVATG-HPKP-SIIWKTSENK  331 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P~p-~v~W~k~~~~  331 (902)
                      +++.++|.|.+.| .|.. .|+|++++..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~   43 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQE   43 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECccc
Confidence            4568999999999 6644 8999997654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.22  E-value=0.028  Score=50.13  Aligned_cols=71  Identities=21%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Ce------eeecC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GT------LIEHD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~------l~~~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|+|.+.|+...  .+.|++..  ..      +....         ..++.+..+...   .+..|.|.++
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~---~t~yLq~~sL   85 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAK---NMAYLRMDSV   85 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEeccccc---ceeeceeccc
Confidence            457789999999999987643  67887643  11      11111         123333332222   2456999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (124)
T d1zvya1          86 KSEDTAIYTCGAT   98 (124)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cCCcceEEEEeec
Confidence            9999999999764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.22  E-value=0.033  Score=48.91  Aligned_cols=74  Identities=18%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             cCceeeeecCceEEEEEEeeccCCc--eEEEEec--CCee-----eecC-C---------ceEEEeecCCCceeeEeEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLS--VRYWEFI--DGTL-----IEHD-G---------VKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~--~~~l-----~~~~-~---------~~~~~~~~~~~s~~~~stL~  435 (902)
                      .+....+..|++++|+|.+.|+...  .+.|.+.  +..+     +... +         .++.+..+....   +..|.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~---tvyL~   82 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSS---TAYMQ   82 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccc---eeEec
Confidence            4445678899999999999987644  5778763  2111     1111 1         134443322222   34599


Q ss_pred             EeccCCCCCeEEEEEE
Q psy12803        436 ISNVNISDFDTYRCIS  451 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A  451 (902)
                      |.+++.+|++.|.|..
T Consensus        83 ~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          83 LSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ccccCCCCceEEEEcc
Confidence            9999999999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=95.21  E-value=0.025  Score=49.88  Aligned_cols=72  Identities=21%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee--e---ecC---------CceEEEeecCCCceeeEeEEEEeccC
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ..+..|++++|.|.+.|+...  .+.|++..  ..+  +   ...         ..++.+..+...   .+..|.|.+++
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~---n~~~L~~~~l~   86 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSK---SQVFLKMNSLH   86 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGG---TEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCC---ceEEcceeeee
Confidence            457889999999999987643  57787642  111  1   011         113333332222   23459999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12803        441 ISDFDTYRCISKN  453 (902)
Q Consensus       441 ~~DsG~YtC~A~N  453 (902)
                      .+|++.|.|.-..
T Consensus        87 ~eDTAvYYCAr~~   99 (116)
T d1a2yb_          87 TDDTARYYCARER   99 (116)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             eccceEEEEEEeC
Confidence            9999999997543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.039  Score=46.98  Aligned_cols=79  Identities=23%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             CceeeeecCceEEEEEEeeccCCceEE-EEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLSVRY-WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P~v~-W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      +..+.+.+|+++.+-|.++ .|...++ |...++.+. .++..+..... .+       ++|.++...|+|.|.|.|...
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~-p~g~~v~~Dpk-~G-------f~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLI-PDGKRIIWDSR-KG-------FIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEEC-CCSSSEEEETT-TE-------EEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccC-CCCCEEEECCC-CC-------EEEeCCCcccCeEEEEEEEEC
Confidence            3456788999999999987 4555554 544554443 23344433222 22       899999999999999999776


Q ss_pred             CceeEEEEEEE
Q psy12803        455 VDIAKGSLILF  465 (902)
Q Consensus       455 ~G~~~~s~~L~  465 (902)
                       |....+..|.
T Consensus        82 -g~~~~S~yl~   91 (95)
T d1fltx_          82 -GHLYKTNYLT   91 (95)
T ss_dssp             -TEEEEEEEEE
T ss_pred             -CEEEEEEEEE
Confidence             4444444443

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.035  Score=46.53  Aligned_cols=79  Identities=18%  Similarity=0.278  Sum_probs=50.8

Q ss_pred             CCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803        369 PPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT  446 (902)
Q Consensus       369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~  446 (902)
                      +|.+.+...   ...++.++|.|.+.++ |. ..|+|.+++..+.. ...........++.+...+.|.|..-   +...
T Consensus         3 pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~-~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~   75 (89)
T d2mhaa1           3 SPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQ-DMELVETRPAGDGTFQKWASVVVPLG---KEQY   75 (89)
T ss_dssp             CCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEECT-TCEECCCEECSSSCEEEEEEEEEESS---TTTT
T ss_pred             CCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCC-CEEECcEecCCCCcEEEEEEEEecCc---CCCE
Confidence            455554222   2345789999999997 43 36899887766532 21111234566777888888888743   3336


Q ss_pred             EEEEEEeC
Q psy12803        447 YRCISKNE  454 (902)
Q Consensus       447 YtC~A~N~  454 (902)
                      |+|.+...
T Consensus        76 ytC~V~H~   83 (89)
T d2mhaa1          76 YTCHVYHQ   83 (89)
T ss_dssp             CEEEEECS
T ss_pred             EEEEEEEC
Confidence            99999764

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.18  E-value=0.022  Score=51.24  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--C--eee---e-c----CC----------ceEEEeecCCCceeeEeEE
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--G--TLI---E-H----DG----------VKYSISDVDKGSYQYIMQL  434 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~--~l~---~-~----~~----------~~~~~~~~~~~s~~~~stL  434 (902)
                      ..+..|++++|+|.+.|+...  .+.|++..  .  +.+   . .    ..          .++.+..+...   .+..|
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~---~~~~L   86 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAK---NTVNL   86 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGG---TEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCc---eEEEE
Confidence            456789999999999987543  57898642  1  111   0 0    00          13333332222   24569


Q ss_pred             EEeccCCCCCeEEEEEEEe
Q psy12803        435 NISNVNISDFDTYRCISKN  453 (902)
Q Consensus       435 ~I~~V~~~DsG~YtC~A~N  453 (902)
                      .|.+++.+|++.|.|....
T Consensus        87 ~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EECSCCGGGCEEEEEEEES
T ss_pred             eeecccccceeEEEEEEEe
Confidence            9999999999999997643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.17  E-value=0.031  Score=49.84  Aligned_cols=71  Identities=21%  Similarity=0.257  Sum_probs=44.2

Q ss_pred             eeeecCceEEEEEEeeccCC----ceEEEEec--CCee--e---ecCC---------ceEEEeecCCCceeeEeEEEEec
Q psy12803        379 VGVPIGRTATLECEVEAFPL----SVRYWEFI--DGTL--I---EHDG---------VKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~----P~v~W~k~--~~~l--~---~~~~---------~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ..+..|++++|.|.+.|+..    -.+.|++.  +..+  +   ...+         .++.+..+...   .+..|.|.+
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~---~~~~L~i~s   86 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSN---NQAFLNMMT   86 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGG---TEEEEEECS
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccc---eeEEcceee
Confidence            45778999999999987642    24679753  2111  1   1111         23333322211   234699999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999643

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.13  E-value=0.032  Score=49.42  Aligned_cols=70  Identities=16%  Similarity=0.267  Sum_probs=45.2

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|+|.+.|+...  .+.|++..  ..+     +. ..         ..++.+..+...   .+..|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~---nt~~L~~~s   85 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSS---STAYMQLNS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGG---TEEEEEECS
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCc---ceEEeeeec
Confidence            3457889999999999988643  57887542  111     11 11         113333322221   234699999


Q ss_pred             cCCCCCeEEEEE
Q psy12803        439 VNISDFDTYRCI  450 (902)
Q Consensus       439 V~~~DsG~YtC~  450 (902)
                      ++.+|++.|.|.
T Consensus        86 L~~eDTAvYYCA   97 (119)
T d1eapb1          86 LTSEDSAVYFCK   97 (119)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             ccCCcceEEEEE
Confidence            999999999994

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.13  E-value=0.038  Score=49.50  Aligned_cols=71  Identities=23%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             eeeecCceEEEEEEeeccCC----ceEEEEec--CCee--e---ecC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        379 VGVPIGRTATLECEVEAFPL----SVRYWEFI--DGTL--I---EHD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~----P~v~W~k~--~~~l--~---~~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ..+..|++++|+|.+.|...    ..+.|++.  +..+  +   ...         ..++.+.......   +..|.|.+
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~---t~~L~i~~   86 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSN---QVFLKITS   86 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCc---EEEcceec
Confidence            35778999999999987642    25678753  2211  1   111         1133333322221   45699999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        87 l~~eDtAvYyCAr~  100 (126)
T d1etzb1          87 VDTSDTATYHCARR  100 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEEe
Confidence            99999999999753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=95.13  E-value=0.035  Score=49.00  Aligned_cols=72  Identities=21%  Similarity=0.277  Sum_probs=45.5

Q ss_pred             ceeeeecCceEEEEEEeeccCC--ceEEEEecC--Cee-----eec-C---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        377 RRVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL-----IEH-D---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l-----~~~-~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ....+..|++++|+|.+.|+..  -.+.|.+.-  ..+     +.. .         ..++++..+...   .+..|.|.
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~---~t~yL~i~   84 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSS---STAYMQFS   84 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGG---TEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCcc---ceEEeccc
Confidence            3456788999999999998753  357787532  211     111 1         113333322221   23469999


Q ss_pred             ccCCCCCeEEEEEE
Q psy12803        438 NVNISDFDTYRCIS  451 (902)
Q Consensus       438 ~V~~~DsG~YtC~A  451 (902)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          85 SLTTEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999954

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.12  E-value=0.0091  Score=52.82  Aligned_cols=71  Identities=18%  Similarity=0.344  Sum_probs=45.1

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC--------Cccceec--cC---CcEEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG--------SWKDSAV--AS---STLNFT  351 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~--------~~~~~~~--~~---~sL~I~  351 (902)
                      +.++....++.|++++|.|.++|..  .-.+.|+|..  +.+.      ...        ..+..+.  ..   ..|.|+
T Consensus         4 L~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~   83 (116)
T d7fabh1           4 LEQSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLS   83 (116)
T ss_dssp             EEEECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EEeECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccc
Confidence            3345556788999999999999843  3457788742  1110      000        0111121  11   259999


Q ss_pred             eeeeecCceeEEee
Q psy12803        352 RINRINMGAYMCLA  365 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A  365 (902)
                      +++.+|++.|.|..
T Consensus        84 ~L~~eDtAvYyCAr   97 (116)
T d7fabh1          84 SVTAADTAVYYCAR   97 (116)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEeee
Confidence            99999999999965

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.11  E-value=0.0091  Score=52.91  Aligned_cols=70  Identities=19%  Similarity=0.394  Sum_probs=44.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC--CceEEecCC--Cccc-----c-cC---------CccceeccC-----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK--PSIIWKTSE--NKPI-----T-LG---------SWKDSAVAS-----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~--p~v~W~k~~--~~~~-----~-~~---------~~~~~~~~~-----~sL~I  350 (902)
                      +.++....++.|++|.|.|.++|...  -.+.|+|..  +.+.     . ..         ..+..+..+     ..|.|
T Consensus         4 L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~   83 (118)
T d2jelh1           4 LAQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMEL   83 (118)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEE
T ss_pred             eEeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecc
Confidence            44566678899999999999998543  347787732  1110     0 00         011111111     25889


Q ss_pred             EeeeeecCceeEEe
Q psy12803        351 TRINRINMGAYMCL  364 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~  364 (902)
                      ++++.+|++.|.|.
T Consensus        84 ~sL~~eDTAvYYCA   97 (118)
T d2jelh1          84 ARLTSEDSAIYYCA   97 (118)
T ss_dssp             CSCCGGGCEEEEEE
T ss_pred             cccccCcceeeeEE
Confidence            99999999999994

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.11  E-value=0.016  Score=50.38  Aligned_cols=69  Identities=17%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             eeecCceEEEEEEeeccC--CceEEEEecC--Cee-----eecC---------CceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        380 GVPIGRTATLECEVEAFP--LSVRYWEFID--GTL-----IEHD---------GVKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~~l-----~~~~---------~~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .+..|++++|.|.+.|+-  .-.+.|++..  ..+     +...         ..++.+..+....   +..|.|.+++.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n---~~~L~i~~l~~   80 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKK---TVYLEMNSLEP   80 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTC---CEEEEECSCCG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCcee---EEEEeecCCCc
Confidence            367899999999998763  3357787652  111     0111         1234444333222   34599999999


Q ss_pred             CCCeEEEEEE
Q psy12803        442 SDFDTYRCIS  451 (902)
Q Consensus       442 ~DsG~YtC~A  451 (902)
                      +|++.|.|..
T Consensus        81 eDtAvYyCA~   90 (107)
T d1sjva_          81 EDTAVYYCYT   90 (107)
T ss_dssp             GGCSEEEEEE
T ss_pred             ccceeeeEec
Confidence            9999999954

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.09  E-value=0.045  Score=48.50  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=45.7

Q ss_pred             eeeecCceEEEEEEeeccCC--ceEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+..  -.+.|.+..  ..+     +...          ..++.+..+...   .+..|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~---~t~yLq~~~L   86 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGK---NTVYLQMDSL   86 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTST---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCc---eEEEEEeeec
Confidence            45789999999999998753  357787642  111     1111          123444433222   2345999999


Q ss_pred             CCCCCeEEEEEE
Q psy12803        440 NISDFDTYRCIS  451 (902)
Q Consensus       440 ~~~DsG~YtC~A  451 (902)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (121)
T d2p49b1          87 KPEDTATYYCAA   98 (121)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccceeEEeeec
Confidence            999999999965

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.06  E-value=0.078  Score=47.62  Aligned_cols=72  Identities=19%  Similarity=0.312  Sum_probs=46.5

Q ss_pred             eeeeecCceEEEEEEeeccCC--ceEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|+|.+.|+..  -.+.|++.-  ..+     +. ..         ..++.+..+....   +..|.|.+
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~---t~yL~i~~   85 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKN---TLYLQMNS   85 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTC---CEEEEEES
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCc---eeEecEee
Confidence            345788999999999998753  357887542  111     11 11         1234444333222   34599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (135)
T d1ieha_          86 LKSEDTAVYYCAKY   99 (135)
T ss_dssp             CCSSSCEEEEEEEB
T ss_pred             eCcccceeeEEEEe
Confidence            99999999999654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0031  Score=56.03  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=32.1

Q ss_pred             cCceeeeecCceEEEEEEeeccCCceEEEEecCCeee
Q psy12803        375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLI  411 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~  411 (902)
                      .+..+.+.+|++++|.|.+.|.|.|.|.|++++..+.
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~   51 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGN   51 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSC
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEcc
Confidence            3557889999999999999999999999999876553

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=95.04  E-value=0.052  Score=48.41  Aligned_cols=73  Identities=21%  Similarity=0.400  Sum_probs=47.1

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+..-  .+.|++..  ..+     +. ..         ..++.+..+....   +..|.|.++
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~n---t~~L~~~~L   86 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKN---SLYLQMNSL   86 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCc---EEEeeeeee
Confidence            457889999999999987643  57787642  111     11 11         1233343322222   345999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12803        440 NISDFDTYRCISKNE  454 (902)
Q Consensus       440 ~~~DsG~YtC~A~N~  454 (902)
                      +.+|++.|.|.....
T Consensus        87 ~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          87 RAEDMALYYCVKGRD  101 (126)
T ss_dssp             CGGGCEEEEEEEEEC
T ss_pred             ccCcceEEEEEeccC
Confidence            999999999976543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.01  E-value=0.013  Score=51.86  Aligned_cols=71  Identities=18%  Similarity=0.389  Sum_probs=46.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cc-cC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----IT-LG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++++|.|.++|..  .-.+.|+|..  +.+     +. ..         ..+..+.. +    ..|.|
T Consensus         3 L~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m   82 (117)
T d1um5h1           3 LQQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLEL   82 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecc
Confidence            4456677899999999999999854  3457898742  111     00 00         01111111 1    14899


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        83 ~sL~~eDtAvYYCAr   97 (117)
T d1um5h1          83 SSLTSEDSAVYYCAR   97 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999953

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.00  E-value=0.037  Score=49.22  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             ceeeeecCceEEEEEEeeccCC--ceEEEEecC--Cee--e---ecCC----------ceEEEeecCCCceeeEeEEEEe
Q psy12803        377 RRVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL--I---EHDG----------VKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l--~---~~~~----------~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ....+..|++++|.|.+.|+..  -.+.|++..  ..+  +   ....          .++.+..+...   .+..|.|.
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~---~t~~L~i~   84 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSS---NTAYLQLT   84 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGG---TEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCC---ceeeeccc
Confidence            3445888999999999988753  367897642  111  1   1111          12333222211   13459999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy12803        438 NVNISDFDTYRCISK  452 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~  452 (902)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.00  E-value=0.035  Score=49.65  Aligned_cols=73  Identities=12%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             ceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ....+..|++++|+|.+.|+..-  .+.|++..  ..+     +. ..         ..++.+..+....   +..|.|.
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n---~vyL~l~   84 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSN---TAFMYLN   84 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcc---eEeeeee
Confidence            34557889999999999987643  57787542  111     11 11         1233333322222   3459999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy12803        438 NVNISDFDTYRCISK  452 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~  452 (902)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.99  E-value=0.022  Score=50.56  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             eeeecCceEEEEEEeeccCC----ceEEEEecC--Cee-----eecCC---------ceEEEeecCCCceeeEeEEEEec
Q psy12803        379 VGVPIGRTATLECEVEAFPL----SVRYWEFID--GTL-----IEHDG---------VKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~----P~v~W~k~~--~~l-----~~~~~---------~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ..+..|++++|+|.+.|+..    -.+.|++..  ..+     +..++         .++.+..+....   +..|.|.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n---~~~L~~~s   86 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLN---KFFIQLIS   86 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTT---EEEEEESS
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccc---eeecceee
Confidence            45788999999999998753    257797642  221     11111         233343322222   34599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|++.|.|...
T Consensus        87 L~~eDtAvYYCAr~  100 (120)
T d1ai1h1          87 VTNEDTAMYYCSRE  100 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeccceeEEEEEec
Confidence            99999999999644

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.99  E-value=0.01  Score=51.04  Aligned_cols=65  Identities=15%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcccccCC-ccceeccCCcEEE---EeeeeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKPITLGS-WKDSAVASSTLNF---TRINRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I---~~Vt~~DsG~YtC~A~N  367 (902)
                      +..++.++|.|.|.+ +| ...|+|++++..+..... .......+++..+   ..|..++...|+|.+.+
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H   84 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEH   84 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEEC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEe
Confidence            345788999999999 34 678999997765432211 1112223333222   23444555577777765

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.01  Score=52.51  Aligned_cols=72  Identities=18%  Similarity=0.373  Sum_probs=45.6

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccccc------cC--------Cccceecc-C----CcEEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPIT------LG--------SWKDSAVA-S----STLNFT  351 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~~------~~--------~~~~~~~~-~----~sL~I~  351 (902)
                      +.++....++.|++++|.|.++|..  .-.+.|+|.-  +.+..      ..        ..+..+.. +    -.|.|.
T Consensus         4 L~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~   83 (117)
T d1c5db1           4 LLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN   83 (117)
T ss_dssp             EEEECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEEC
T ss_pred             EeeECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccc
Confidence            3445556789999999999999854  3457888742  11100      00        11221211 1    258999


Q ss_pred             eeeeecCceeEEeec
Q psy12803        352 RINRINMGAYMCLAD  366 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~  366 (902)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          84 SLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccccCcceEEEEecc
Confidence            999999999999643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.96  E-value=0.012  Score=52.73  Aligned_cols=69  Identities=17%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC----CCceEEecC--CCccc------ccCC--------ccceecc-C----CcEEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTS--ENKPI------TLGS--------WKDSAVA-S----STLNFT  351 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~--~~~~~------~~~~--------~~~~~~~-~----~sL~I~  351 (902)
                      ++....|+.|++|+|.|.+.|..    ...+.|+|.  ++.+.      ....        .+..+.. +    -.|.|+
T Consensus         6 esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~   85 (123)
T d1r0ah1           6 ESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMM   85 (123)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEccee
Confidence            44455688999999999988733    224679863  11111      0000        1111111 1    249999


Q ss_pred             eeeeecCceeEEee
Q psy12803        352 RINRINMGAYMCLA  365 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A  365 (902)
                      +++.+|++.|.|..
T Consensus        86 sl~~eDsAvYyCAr   99 (123)
T d1r0ah1          86 TVETADTAIYYCAQ   99 (123)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecccccceEEeecc
Confidence            99999999999964

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.94  E-value=0.01  Score=52.42  Aligned_cols=72  Identities=21%  Similarity=0.376  Sum_probs=45.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceecc---C--CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAVA---S--STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~~---~--~sL~I  350 (902)
                      +.++....++.|+++.|+|.++|..  .-.+.|+|.-  +.+     + ...         ..+..+..   .  ..|.|
T Consensus         4 L~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m   83 (117)
T d1jpth1           4 LVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQM   83 (117)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecc
Confidence            4455667899999999999999854  3457787742  111     0 000         01111111   1  24888


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          84 NSLRAEDTAVYYCARD   99 (117)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCCceEEEEeec
Confidence            8999999999999643

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.94  E-value=0.038  Score=49.33  Aligned_cols=72  Identities=11%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             CceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee------eecC---------CceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL------IEHD---------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l------~~~~---------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +....+..|++++|.|.+.|+..-  .+.|++.-  ..+      ....         ..++.+..+...   .+..|.|
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~---nt~yL~~   83 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA---NTAYMEL   83 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGG---TEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCc---eEEEEEE
Confidence            344568899999999999987644  57887642  111      1111         123334332221   2345999


Q ss_pred             eccCCCCCeEEEEE
Q psy12803        437 SNVNISDFDTYRCI  450 (902)
Q Consensus       437 ~~V~~~DsG~YtC~  450 (902)
                      .+++.+|++.|.|.
T Consensus        84 ~~L~~eDtAvYYCA   97 (127)
T d1n0xh1          84 RSLRSADTAVYYCA   97 (127)
T ss_dssp             CSCCGGGCEEEEEE
T ss_pred             EccCCCCceEEEEE
Confidence            99999999999995

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.90  E-value=0.061  Score=47.93  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=46.9

Q ss_pred             CceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +....+..|++++|.|.+.|+..-  .+.|.+.-  ..+     +...          ..++.+..+....   +..|.|
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~n---t~yL~m   82 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSN---IAYMQL   82 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCcc---EEEeee
Confidence            334567889999999999987643  57787531  111     1111          1233443332222   345999


Q ss_pred             eccCCCCCeEEEEEE
Q psy12803        437 SNVNISDFDTYRCIS  451 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A  451 (902)
                      .+++.+|.+.|.|..
T Consensus        83 ~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          83 SSLTSEDSAVYYCAR   97 (126)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999964

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.89  E-value=0.057  Score=48.29  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=47.4

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|+|.+.|+..-  .+.|++.-  ..+     +...          ..++.+.......   +..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~---t~yL~~~s   85 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTS---TVYLELRN   85 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCc---eEEeeeee
Confidence            3457899999999999988654  46786532  111     0111          1234444333222   34599999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy12803        439 VNISDFDTYRCISKN  453 (902)
Q Consensus       439 V~~~DsG~YtC~A~N  453 (902)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            999999999998654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.87  E-value=0.012  Score=52.29  Aligned_cols=70  Identities=21%  Similarity=0.332  Sum_probs=44.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCCC---ceEEecC--CCccc------ccC--------Cccceecc-C----CcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPKP---SIIWKTS--ENKPI------TLG--------SWKDSAVA-S----STLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~p---~v~W~k~--~~~~~------~~~--------~~~~~~~~-~----~sL~I~  351 (902)
                      .++....++.|++++|+|.++|....   .+.|+|.  ++.+.      ...        ..+..+.. +    -.|.|.
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~   84 (119)
T d1ncwh1           5 QQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLN   84 (119)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccc
Confidence            34555678899999999999986542   3678763  11110      000        01111111 1    158889


Q ss_pred             eeeeecCceeEEee
Q psy12803        352 RINRINMGAYMCLA  365 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A  365 (902)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1ncwh1          85 SVTTEDTATYYCAG   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCCceEEEEeE
Confidence            99999999999953

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.86  E-value=0.016  Score=51.48  Aligned_cols=71  Identities=17%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cc-cC---------Cccceecc-C--C--cEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----IT-LG---------SWKDSAVA-S--S--TLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~~-~--~--sL~I~  351 (902)
                      .++....++.|++++|+|.++|..  .--+.|+|..  +.+     +. ..         ..+..+.. +  +  .|.|.
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~   85 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence            345667799999999999999854  3347788732  111     00 00         01111211 1  1  48899


Q ss_pred             eeeeecCceeEEeec
Q psy12803        352 RINRINMGAYMCLAD  366 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~  366 (902)
                      +++.+|++.|.|...
T Consensus        86 ~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          86 SLRPEDTAVYYCARD  100 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.85  E-value=0.011  Score=52.35  Aligned_cols=70  Identities=19%  Similarity=0.393  Sum_probs=44.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++|+|.|.++|..  .-.+.|+|.-  +.+     + ...         ..+..+.. +    -.|.|
T Consensus         4 L~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~   83 (118)
T d1nlbh1           4 LVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQI   83 (118)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeee
Confidence            3455567789999999999999843  3457887742  111     0 000         01112211 1    14889


Q ss_pred             EeeeeecCceeEEe
Q psy12803        351 TRINRINMGAYMCL  364 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~  364 (902)
                      .+++.+|++.|.|.
T Consensus        84 ~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          84 NSLKNEDTATYFCA   97 (118)
T ss_dssp             CSCCGGGCEEEEEE
T ss_pred             eecccCcceEEEEe
Confidence            99999999999995

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.85  E-value=0.045  Score=48.60  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+..-  .+.|++..  ..+     +...          ..++.+..+....   +..|.|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~---~~~L~i~sL   86 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKN---TLYLQMNSL   86 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccce---eEEeeeeec
Confidence            457889999999999987533  57887542  111     1111          1233343332222   346999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d1ol0a_          87 RAEDTAVYYCARE   99 (121)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccccceEEEEEEe
Confidence            9999999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.85  E-value=0.046  Score=49.07  Aligned_cols=75  Identities=12%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             CceeeeecCceEEEEEEeeccCC--ceEEEEecC--Ceee-----e-cC---------CceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPL--SVRYWEFID--GTLI-----E-HD---------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l~-----~-~~---------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +....+..|++++|+|.+.|+..  -.+.|++..  ..+.     . ..         ..++.+..+....   +..|.|
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~---tv~L~~   82 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATS---TAYMEL   82 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTT---EEEEEE
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCcc---EEEEEe
Confidence            33455789999999999998753  357787642  2111     1 11         1234444333222   345999


Q ss_pred             eccCCCCCeEEEEEEEe
Q psy12803        437 SNVNISDFDTYRCISKN  453 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A~N  453 (902)
                      .+++.+|++.|.|....
T Consensus        83 ~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eccCCCCcEEEEEEeec
Confidence            99999999999996543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.82  E-value=0.021  Score=50.67  Aligned_cols=71  Identities=20%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----c-cC---------CccceeccC---C--cEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----T-LG---------SWKDSAVAS---S--TLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~-~~---------~~~~~~~~~---~--sL~I~  351 (902)
                      .++....++.|++++|.|.++|..  .-.+.|+|..  +.+.     . ..         ..+..+..+   +  .|.|.
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~   84 (121)
T d2p49b1           5 VESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMD   84 (121)
T ss_dssp             EEEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEee
Confidence            344556789999999999998743  3457788742  1110     0 00         012222211   1  48899


Q ss_pred             eeeeecCceeEEeec
Q psy12803        352 RINRINMGAYMCLAD  366 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~  366 (902)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          85 SLKPEDTATYYCAAG   99 (121)
T ss_dssp             SCCGGGCEEEEEEES
T ss_pred             eccccceeEEeeecc
Confidence            999999999999753

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.78  E-value=0.011  Score=53.59  Aligned_cols=70  Identities=17%  Similarity=0.364  Sum_probs=43.9

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC----CCceEEecCCC--cc--cc----cC--------Cccceec-cC----CcEEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTSEN--KP--IT----LG--------SWKDSAV-AS----STLNFT  351 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~--~~--~~----~~--------~~~~~~~-~~----~sL~I~  351 (902)
                      ++....|+.|++++|.|.++|..    ..-+.|+|..-  .+  +.    ..        ..+..+. ++    -.|.|+
T Consensus         6 esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~   85 (132)
T d1tjgh1           6 ESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMT   85 (132)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccc
Confidence            44445688999999999988743    22478987421  11  00    00        0111111 11    149999


Q ss_pred             eeeeecCceeEEeec
Q psy12803        352 RINRINMGAYMCLAD  366 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~  366 (902)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          86 RVSPVDTATYFCAHR  100 (132)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cCCcccceEEEEEEe
Confidence            999999999999754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.77  E-value=0.011  Score=52.60  Aligned_cols=72  Identities=18%  Similarity=0.381  Sum_probs=46.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----c-cC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----T-LG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~-~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|++|+|.|.++|..  ...+.|+|..  +.+.     . ..         ..+..+. ++    -.|.|
T Consensus         4 L~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i   83 (120)
T d1pg7x1           4 LQQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIEL   83 (120)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccc
Confidence            4456667789999999999998743  3357898742  1111     0 00         0111111 11    14899


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          84 VRLTSNDSAVYYCARE   99 (120)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEeeec
Confidence            9999999999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=94.76  E-value=0.06  Score=47.47  Aligned_cols=73  Identities=26%  Similarity=0.324  Sum_probs=46.3

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Ceee-----ecCC---------ceEEEeecCCCceeeEeEEEEeccC
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTLI-----EHDG---------VKYSISDVDKGSYQYIMQLNISNVN  440 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l~-----~~~~---------~~~~~~~~~~~s~~~~stL~I~~V~  440 (902)
                      ..+..|++++|.|.+.|+..-  .+.|++..  ..+.     ...+         .++.+..+...   .+..|.|.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~---nt~~L~i~~l~   86 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVR---NILTLQMSRLR   86 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTT---TEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccc---eeeeecccccc
Confidence            457889999999999988643  67787642  1110     1111         12333322221   13459999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12803        441 ISDFDTYRCISKNE  454 (902)
Q Consensus       441 ~~DsG~YtC~A~N~  454 (902)
                      .+|++.|.|.....
T Consensus        87 ~eDtA~YyCAr~~~  100 (118)
T d1lo4h1          87 SEDTAIYYCARGTS  100 (118)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             CCcceEEEecccCC
Confidence            99999999965443

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.73  E-value=0.012  Score=51.39  Aligned_cols=71  Identities=15%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------cc--C---------Cccceecc---C--CcE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TL--G---------SWKDSAVA---S--STL  348 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~--~---------~~~~~~~~---~--~sL  348 (902)
                      +.++....|+.|++++|+|.++|..  .--+.|+|..  +.+.      ..  .         ..+..+..   .  ..|
T Consensus         4 L~eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L   83 (109)
T d2ck0h1           4 LQESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYL   83 (109)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             EEeECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEe
Confidence            3455667899999999999999844  3357887732  1110      00  0         01212221   1  258


Q ss_pred             EEEeeeeecCceeEEee
Q psy12803        349 NFTRINRINMGAYMCLA  365 (902)
Q Consensus       349 ~I~~Vt~~DsG~YtC~A  365 (902)
                      .|++++.+|++.|.|.-
T Consensus        84 ~i~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          84 QMNNLKTEDTGIYYCVR  100 (109)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             cccCCCHhHCEEEEEEE
Confidence            99999999999999964

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.046  Score=46.98  Aligned_cols=71  Identities=13%  Similarity=0.321  Sum_probs=48.8

Q ss_pred             cCceEEEEEEeecc-CCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        383 IGRTATLECEVEAF-PLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .++.++|.|.+.++ |..  .+.|.+++..+....   .......++.|...+.|.|..-.....-.|+|.|.....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~---~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN---FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE---CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeE---eeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            46789999999995 643  567866655443211   112335566788888999988776666689999987544

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.016  Score=50.13  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             eeecCceEEEEEEeecc-CC---ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        380 GVPIGRTATLECEVEAF-PL---SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~-P~---P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .+..++.++|.|.+.++ |.   ..+.|.+++..+...  .........++.|...|.|.|..-.-...-.|+|.|....
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~--~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA--KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCC--EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCc--EECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            35568899999999986 53   367787776655321  1112233566778888888887654444458999998865


Q ss_pred             c
Q psy12803        456 D  456 (902)
Q Consensus       456 G  456 (902)
                      .
T Consensus        92 l   92 (105)
T d1l6xa1          92 L   92 (105)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.70  E-value=0.011  Score=52.23  Aligned_cols=70  Identities=17%  Similarity=0.330  Sum_probs=44.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecC--CCccc-----c-cC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTS--ENKPI-----T-LG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~--~~~~~-----~-~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|++++|+|.++|..  .-.+.|+|.  ++.+.     . ..         ..+.... ++    ..|.|
T Consensus         4 L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           4 VQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            4566677889999999999999843  334778763  11110     0 00         0111111 11    15899


Q ss_pred             EeeeeecCceeEEe
Q psy12803        351 TRINRINMGAYMCL  364 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~  364 (902)
                      .+++.+|++.|.|.
T Consensus        84 ~~L~~eDtAvYYCA   97 (117)
T d1mfah1          84 SSLTSEDSAVYYCT   97 (117)
T ss_dssp             CSCCGGGCEEEEEE
T ss_pred             cccCCCcceEEEEe
Confidence            99999999999995

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.70  E-value=0.062  Score=48.00  Aligned_cols=71  Identities=21%  Similarity=0.328  Sum_probs=45.2

Q ss_pred             eeeecCceEEEEEEeeccCC---ceEEEEec--CCeee-----ecCC---------ceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPL---SVRYWEFI--DGTLI-----EHDG---------VKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~---P~v~W~k~--~~~l~-----~~~~---------~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+..   -.+.|++.  +..+.     ....         .++.+..+...   .+..|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~---nt~yL~l~~l   86 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSK---NQFFLKLNSV   86 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeeccccc---ceeecceecc
Confidence            34778999999999998754   35789764  32221     1111         11222222211   2456999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYyCAr~   99 (127)
T d3cx5j1          87 TTEDTATYYCARS   99 (127)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEeeee
Confidence            9999999999753

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.67  E-value=0.067  Score=47.61  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             eeeecCceEEEEEEeeccCC--ceEEEEecC--Cee------eecC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL------IEHD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l------~~~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      -.+..|++++|.|.+.|+-.  -.+.|++..  ..+      ....         ..++.+..+...   .+..|.|.++
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~---~t~~Lqm~sL   86 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLE---DFVYLQMHKM   86 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCcc---ceEeeeeecc
Confidence            45788999999999998753  357887642  111      0111         123444433222   2456999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (125)
T d1op3h1          87 RVEDTAIYYCARKG  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCccceeEeEeecc
Confidence            99999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.66  E-value=0.051  Score=48.22  Aligned_cols=72  Identities=22%  Similarity=0.398  Sum_probs=46.7

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee--e----e-cC----------CceEEEeecCCCceeeEeEEEEe
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL--I----E-HD----------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l--~----~-~~----------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..+..|++++|.|.+.|+...  .+.|++..  ..+  +    . .+          ..++.+..+....   +..|.|.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~n---t~~L~~~   86 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQS---ILYLQMN   86 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTT---EEEEEEC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccc---eecccee
Confidence            457889999999999987644  57898542  111  1    0 00          1233443322222   3459999


Q ss_pred             ccCCCCCeEEEEEEEe
Q psy12803        438 NVNISDFDTYRCISKN  453 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N  453 (902)
                      +++.+|++.|.|....
T Consensus        87 sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          87 TLRAEDSATYYCARDH  102 (122)
T ss_dssp             SCCGGGCEEEEEEECC
T ss_pred             eeccCcceEEEEEecC
Confidence            9999999999997643

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=94.64  E-value=0.027  Score=48.28  Aligned_cols=68  Identities=18%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CceEEEEEEeecc-CC-ceEEEEecCCeeeec--CCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803        384 GRTATLECEVEAF-PL-SVRYWEFIDGTLIEH--DGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE  454 (902)
Q Consensus       384 G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~--~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~  454 (902)
                      ...++|.|.+.++ |. ..|.|.+++..+...  ... ........+++|...+.|.|..   .+...|+|.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~---~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG---GLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT---TCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC---CCCCEEEEEEEeC
Confidence            3478999999988 43 378899887654321  111 1112345677888888888754   3445799999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.63  E-value=0.058  Score=47.91  Aligned_cols=72  Identities=21%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|+|.+.|+..-  .+.|++..  ..+     +...          ..++.+......   .+..|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~---~t~yL~m~sL   86 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPK---NTLFLQMTSL   86 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCc---cEeEeeeeee
Confidence            457789999999999987643  57887642  111     0111          123333332221   2345999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|...+
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999996543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.62  E-value=0.058  Score=47.69  Aligned_cols=72  Identities=19%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             eeeecCceEEEEEEeeccCC--ceEEEEec--CCeee------e--cC---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        379 VGVPIGRTATLECEVEAFPL--SVRYWEFI--DGTLI------E--HD---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~--P~v~W~k~--~~~l~------~--~~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..+..|++++|.|.+.|+..  -.+.|++.  +..+.      .  ..         ..++.+..+....   +..|.|.
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n---~~~L~~~   86 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKR---RVYLQMN   86 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTT---EEEEEEC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccc---eecccee
Confidence            45788999999999998753  36778754  22211      0  00         1133443322221   3459999


Q ss_pred             ccCCCCCeEEEEEEEe
Q psy12803        438 NVNISDFDTYRCISKN  453 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~N  453 (902)
                      +++.+|++.|.|....
T Consensus        87 ~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             SCCGGGCEEEEEEEEB
T ss_pred             eccCCCceEEEeeEec
Confidence            9999999999996533

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.58  E-value=0.045  Score=48.94  Aligned_cols=71  Identities=20%  Similarity=0.283  Sum_probs=44.7

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC-C---------ceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD-G---------VKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~-~---------~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|+|.+.|+...  .+.|++..  ..+     +... +         .++.+..+...   .+..|.|.++
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~---~~~~L~i~~l   85 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAK---NTLYLQMNSL   85 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC-----CEEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCc---eEEEEEEecc
Confidence            457789999999999987543  57887642  111     1111 1         13344332221   2455999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12803        440 NISDFDTYRCISK  452 (902)
Q Consensus       440 ~~~DsG~YtC~A~  452 (902)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1rjca1          86 KPEDTAMYYCAAD   98 (126)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCceeEEEee
Confidence            9999999999754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.57  E-value=0.047  Score=48.59  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=46.4

Q ss_pred             CceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----ee-cC---------CceEEEeecCCCceeeEeEEEE
Q psy12803        376 NRRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IE-HD---------GVKYSISDVDKGSYQYIMQLNI  436 (902)
Q Consensus       376 p~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~-~~---------~~~~~~~~~~~~s~~~~stL~I  436 (902)
                      +....+..|++++|.|.+.|+..-  .+.|++..  ..+     +. ..         ..++.+..+....   +..|.|
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~---t~yL~~   83 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTN---TAHLQW   83 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCc---EEEEee
Confidence            334567899999999999987643  57887632  111     11 11         1223333322221   345999


Q ss_pred             eccCCCCCeEEEEEE
Q psy12803        437 SNVNISDFDTYRCIS  451 (902)
Q Consensus       437 ~~V~~~DsG~YtC~A  451 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          84 SSLKPSDTALYYCAR   98 (124)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             eccccccceEEEEee
Confidence            999999999999953

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.57  E-value=0.02  Score=51.55  Aligned_cols=72  Identities=18%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceec-cC--C--cEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAV-AS--S--TLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~-~~--~--sL~I  350 (902)
                      +.++....++.|+++.|+|.++|..  .-.+.|+|..  +.+.      ...         ..+..+. ++  +  .|.|
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~   82 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMEL   82 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEe
Confidence            3455667789999999999999843  3457888742  1111      000         0111111 11  1  4888


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      ++++.+|++.|.|...
T Consensus        83 ~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARD   98 (130)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCCCCcEEEEEEee
Confidence            9999999999999654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.57  E-value=0.017  Score=50.92  Aligned_cols=71  Identities=17%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|+++.|+|.++|..  .-.+.|.|.-  +.+.      ...         ..+..+. ++    -.|.|
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~   83 (116)
T d1mjuh1           4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (116)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecc
Confidence            4566678899999999999999844  3357787731  1110      000         0122221 11    15888


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          84 SSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCceEEEEcc
Confidence            899999999999953

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.57  E-value=0.018  Score=51.42  Aligned_cols=72  Identities=19%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceecc-C----CcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAVA-S----STLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~~-~----~sL~I~  351 (902)
                      .++..-.|+.|+++.|+|.++|..  .-.+.|+|..  +.+     + ...         ..+..+.. +    -.|.|+
T Consensus         4 ~esG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~   83 (124)
T d1zvya1           4 VESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMD   83 (124)
T ss_dssp             EEECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceec
Confidence            344556788999999999999843  4458898742  111     1 001         01111111 1    258888


Q ss_pred             eeeeecCceeEEeecC
Q psy12803        352 RINRINMGAYMCLADN  367 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~N  367 (902)
                      +++.+|++.|.|....
T Consensus        84 sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          84 SVKSEDTAIYTCGATR   99 (124)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             cccCCcceEEEEeecc
Confidence            9999999999997654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.57  E-value=0.064  Score=47.38  Aligned_cols=72  Identities=13%  Similarity=0.236  Sum_probs=46.3

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|.|.+.|+...  .+.|.+.-  ..+     +...          ..++.+.......   +..|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~n---t~~L~m~~   85 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTN---TAYMELSS   85 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcce---EEeccccc
Confidence            3458899999999999987644  57787542  111     1111          1233333322222   34599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy12803        439 VNISDFDTYRCISK  452 (902)
Q Consensus       439 V~~~DsG~YtC~A~  452 (902)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.56  E-value=0.024  Score=50.24  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC--CceEEecCC--Ccccc--------cC---------CccceeccC-----CcE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK--PSIIWKTSE--NKPIT--------LG---------SWKDSAVAS-----STL  348 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~--p~v~W~k~~--~~~~~--------~~---------~~~~~~~~~-----~sL  348 (902)
                      +.++....++.|+++.|.|.++|...  -.+.|+|..  +.+..        ..         ..+..+..+     -.|
T Consensus         4 L~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL   83 (121)
T d1nfdf1           4 LVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYL   83 (121)
T ss_dssp             EEEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeec
Confidence            34556678999999999999998543  346787732  11100        00         011111111     149


Q ss_pred             EEEeeeeecCceeEEee
Q psy12803        349 NFTRINRINMGAYMCLA  365 (902)
Q Consensus       349 ~I~~Vt~~DsG~YtC~A  365 (902)
                      .|++++.+|++.|.|..
T Consensus        84 ~~~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          84 QMNRLRVDDTAIYYCTR  100 (121)
T ss_dssp             EEESCCGGGCEECEEEE
T ss_pred             eecccCCCcceEEEEec
Confidence            99999999999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=94.55  E-value=0.013  Score=51.82  Aligned_cols=70  Identities=16%  Similarity=0.263  Sum_probs=44.2

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccccc------cC--------Cccceecc-C----CcEEEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPIT------LG--------SWKDSAVA-S----STLNFTR  352 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~~------~~--------~~~~~~~~-~----~sL~I~~  352 (902)
                      .++....++.|++++|.|.++|..  .-.+.|+|..  +.+.-      ..        ..+..+.. +    -.|.|++
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~   84 (116)
T d1a2yb_           5 QESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNS   84 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             EeECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceee
Confidence            344556788999999999999844  3357788742  11100      00        01111211 1    1599999


Q ss_pred             eeeecCceeEEee
Q psy12803        353 INRINMGAYMCLA  365 (902)
Q Consensus       353 Vt~~DsG~YtC~A  365 (902)
                      ++.+|++.|.|.-
T Consensus        85 l~~eDTAvYYCAr   97 (116)
T d1a2yb_          85 LHTDDTARYYCAR   97 (116)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             eeeccceEEEEEE
Confidence            9999999999964

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.53  E-value=0.017  Score=51.33  Aligned_cols=70  Identities=11%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----ccC---------Cccceecc--C---CcEEEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----TLG---------SWKDSAVA--S---STLNFTR  352 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~~~---------~~~~~~~~--~---~sL~I~~  352 (902)
                      .++..-.++.|++++|.|.++|..  .-.+.|+|..  +.+.     ...         ..+..+..  .   -.|.|.+
T Consensus         5 ~esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~   84 (120)
T d1dn0b1           5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (120)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EeECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccc
Confidence            344556688999999999999854  3357788742  1111     000         11222221  1   1499999


Q ss_pred             eeeecCceeEEee
Q psy12803        353 INRINMGAYMCLA  365 (902)
Q Consensus       353 Vt~~DsG~YtC~A  365 (902)
                      ++.+|++.|.|..
T Consensus        85 l~~eDtA~YYCAr   97 (120)
T d1dn0b1          85 VTAADTAVYYCAR   97 (120)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccccEEEEEe
Confidence            9999999999953

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.52  E-value=0.016  Score=51.22  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=45.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++|.|+|.++|..  .-.+.|+|.-  +.+.      ...         ..+..+.. +    ..|.|
T Consensus         4 L~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~   83 (117)
T d1jnhb1           4 LQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQL   83 (117)
T ss_dssp             EEECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecc
Confidence            4456667788999999999999854  3457888732  1110      000         01222211 1    14889


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      ++++.+|++.|.|..
T Consensus        84 ~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          84 NSLTSEDSAVYSCSR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999954

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.49  E-value=0.057  Score=47.93  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=46.5

Q ss_pred             ceeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEe
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ....+..|+++.|.|.+.|+...  .+.|.+.-  ..+     +...          ..++.+.......   +..|.|.
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~---t~~L~~~   84 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSS---TAYMQLS   84 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTT---EEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcc---eEEeccc
Confidence            33457889999999999987644  57787632  111     1111          1233343332222   3459999


Q ss_pred             ccCCCCCeEEEEEE
Q psy12803        438 NVNISDFDTYRCIS  451 (902)
Q Consensus       438 ~V~~~DsG~YtC~A  451 (902)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAR   98 (124)
T d1yedb1          85 SLKSEDSAVYFCTR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEecc
Confidence            99999999999964

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.017  Score=47.83  Aligned_cols=62  Identities=19%  Similarity=0.374  Sum_probs=43.0

Q ss_pred             EcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeee-ecCceeEEeecC
Q psy12803        304 REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR-INMGAYMCLADN  367 (902)
Q Consensus       304 ~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~-~DsG~YtC~A~N  367 (902)
                      ..|.+|+|+|...  ....|.|.|++..+...............|.+.+-+. +++|.|+|.+..
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            4699999999743  3467999997765543333223333445688887765 799999998754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.44  E-value=0.014  Score=52.48  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC----CCceEEecC--CCcccc------cC--------Cccceecc---C--CcEEEE
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTS--ENKPIT------LG--------SWKDSAVA---S--STLNFT  351 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~--~~~~~~------~~--------~~~~~~~~---~--~sL~I~  351 (902)
                      ++....++.|++|+|.|.+.|..    ...+.|+|.  ++.+..      ..        ..+..+..   .  ..|.|.
T Consensus         6 esG~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~   85 (126)
T d1etzb1           6 ESGPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKIT   85 (126)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEccee
Confidence            33345688899999999988732    234679863  121110      00        01121111   1  259999


Q ss_pred             eeeeecCceeEEee
Q psy12803        352 RINRINMGAYMCLA  365 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A  365 (902)
                      +++.+|++.|.|..
T Consensus        86 ~l~~eDtAvYyCAr   99 (126)
T d1etzb1          86 SVDTSDTATYHCAR   99 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccccccceEEEEE
Confidence            99999999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.40  E-value=0.013  Score=51.55  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=44.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceecc-C--C--cEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAVA-S--S--TLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~~-~--~--sL~I~  351 (902)
                      .++..-.++.|++++|.|.++|..  .-.+.|+|..  +.+     + ...         ..+..+.. +  +  .|.|.
T Consensus         5 ~eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (114)
T d1indh1           5 VESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLN   84 (114)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeee
Confidence            345556789999999999999853  3457788742  111     1 110         01222211 1  1  49999


Q ss_pred             eeeeecCceeEEee
Q psy12803        352 RINRINMGAYMCLA  365 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A  365 (902)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCA~   98 (114)
T d1indh1          85 SLRSEDTALYFCAS   98 (114)
T ss_dssp             SCCGGGCEEEEEEC
T ss_pred             eeccCcccEEEECC
Confidence            99999999999964

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.40  E-value=0.071  Score=47.62  Aligned_cols=72  Identities=25%  Similarity=0.394  Sum_probs=46.2

Q ss_pred             eeeecCceEEEEEEeeccCC--ceEEEEecC--Cee-----eecC----------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPL--SVRYWEFID--GTL-----IEHD----------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~--~~l-----~~~~----------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|.|.+.|+..  -.+.|++..  ..+     +...          ..++.+..+....   +..|.|.++
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~---t~yL~~~~L   86 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKN---TLFLQMDSL   86 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCcc---EEEeeeeee
Confidence            45778999999999998753  357787642  111     1111          1233443333222   345999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|....
T Consensus        87 ~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          87 RPEDTGVYFCARDG  100 (127)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             eecceeEEEEEEec
Confidence            99999999997544

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.39  E-value=0.087  Score=47.31  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----e-ecC---------CceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----I-EHD---------GVKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~-~~~---------~~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|.|.+.|+..-  .+.|.+.-  ..+     + ...         ..++.+..+....   +..|.|.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~---t~~L~~~~   84 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTR---TVYLHLRG   84 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcc---eeEEeecc
Confidence            3458899999999999987543  56787532  111     1 011         1233443332222   45599999


Q ss_pred             cCCCCCeEEEEEEEeC
Q psy12803        439 VNISDFDTYRCISKNE  454 (902)
Q Consensus       439 V~~~DsG~YtC~A~N~  454 (902)
                      ++.+|++.|.|.....
T Consensus        85 L~~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          85 LRSDDTAVYYCASNSI  100 (133)
T ss_dssp             CCGGGCEEEEEEEEEC
T ss_pred             CCCCCCEEEEeeeccC
Confidence            9999999999965443

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.39  E-value=0.019  Score=51.14  Aligned_cols=71  Identities=23%  Similarity=0.392  Sum_probs=45.6

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----c-cC---------Cccceecc---C--CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----T-LG---------SWKDSAVA---S--STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~-~~---------~~~~~~~~---~--~sL~I  350 (902)
                      +.++....++.|++|+|.|.++|..  ...+.|+|..  +.+.     . ..         ..+..+..   .  ..|.|
T Consensus         4 L~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i   83 (121)
T d1j05b_           4 LQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQL   83 (121)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecc
Confidence            4456667799999999999998743  3357897742  1110     0 00         01111111   1  24899


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      ++++.+|++.|.|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (121)
T d1j05b_          84 TSLTSEDTAVYYCAP   98 (121)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCcCcceEEEeEe
Confidence            999999999999964

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.37  E-value=0.022  Score=50.44  Aligned_cols=71  Identities=21%  Similarity=0.395  Sum_probs=45.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cc-cC---------Cccceecc---C--CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----IT-LG---------SWKDSAVA---S--STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~~---~--~sL~I  350 (902)
                      +.++....++.|++|.|.|.++|..  .-.+.|+|..  +.+     +. ..         ..+..+..   .  -.|.|
T Consensus         4 L~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~   83 (119)
T d1eapb1           4 LQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQL   83 (119)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeee
Confidence            4456667789999999999999854  3357888642  111     00 00         01111111   1  25899


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          84 NSLTSEDSAVYFCKR   98 (119)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             ecccCCcceEEEEEE
Confidence            999999999999964

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.36  E-value=0.019  Score=50.78  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC--CceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK--PSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~--p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++++|.|.++|...  -.+.|+|.-  +.+.      ...         ..+..+.. +    -.|.|
T Consensus         4 L~eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~   83 (118)
T d2fbjh1           4 LLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQM   83 (118)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccc
Confidence            34556677899999999999998543  347788632  1110      000         11112221 1    14889


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDtAvYYCAr   98 (118)
T d2fbjh1          84 SKVRSEDTALYYCAR   98 (118)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEeeE
Confidence            999999999999964

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.36  E-value=0.0097  Score=53.00  Aligned_cols=70  Identities=13%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCCC----CceEEecCC--Cccc-----ccCC---------ccceecc-C----CcEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHPK----PSIIWKTSE--NKPI-----TLGS---------WKDSAVA-S----STLNF  350 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P~----p~v~W~k~~--~~~~-----~~~~---------~~~~~~~-~----~sL~I  350 (902)
                      .++....++.|++|+|.|.++|...    -.+.|+|..  +.+.     ....         .+..+.. +    -.|.|
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~   84 (120)
T d1ai1h1           5 QESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQL   84 (120)
T ss_dssp             EEECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecce
Confidence            3445567889999999999988432    247797742  1111     1000         1111211 1    14899


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        85 ~sL~~eDtAvYYCAr   99 (120)
T d1ai1h1          85 ISVTNEDTAMYYCSR   99 (120)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             eeeeccceeEEEEEe
Confidence            999999999999963

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.059  Score=45.66  Aligned_cols=69  Identities=14%  Similarity=0.178  Sum_probs=44.1

Q ss_pred             cCceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803        383 IGRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV  455 (902)
Q Consensus       383 ~G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~  455 (902)
                      .+..++|.|.+.++-+  ..|+|.+++..+... ..........++.+...+.|.+..   ++...|+|++....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~-~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQD-TELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGG-CEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCC-ceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECc
Confidence            3567999999998843  368998877655321 111122335556666677777654   33457999998753

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.33  E-value=0.018  Score=51.58  Aligned_cols=72  Identities=15%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|++++|.|.++|..  .-.+.|+|.-  +.+     + ...         ..+..+. ++    -.|.|
T Consensus         4 L~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l   83 (125)
T d1rihh1           4 LQQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYL   83 (125)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eEeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeee
Confidence            4456667889999999999999844  2357787632  111     0 000         0111111 11    14889


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          84 NSLTSEDSAVYYCARE   99 (125)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCcccceEEEEeee
Confidence            9999999999999643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=94.32  E-value=0.016  Score=49.71  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=32.2

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCcccccC-CccceeccCCc---EEEEeeeeecCceeEEeecC
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENKPITLG-SWKDSAVASST---LNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~-~~~~~~~~~~s---L~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ..++.++|.|.+.+ .| ...|+|++++..+.... ........+++   +....+..++...|+|++..
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H   85 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEH   85 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEEC
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEE
Confidence            34677789999999 44 45899999765542211 11111222332   22233444555566666655

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=94.32  E-value=0.021  Score=50.71  Aligned_cols=85  Identities=12%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             CCEEEE-cCcee-eeecCceEEEEEEeecc-CC---ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803        369 PPQILI-RNRRV-GVPIGRTATLECEVEAF-PL---SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS  442 (902)
Q Consensus       369 ~P~i~~-~p~~~-~v~~G~~v~L~C~a~g~-P~---P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~  442 (902)
                      .|.+.+ .+... ....++.++|.|.+.++ |.   ..|.|+.++..+......  ......++.|...+.|.|..-.-.
T Consensus        15 ~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~--~~~~~~~gt~s~~S~L~v~~~eW~   92 (119)
T d1igtb3          15 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ--THREDYNSTLRVVSALPIQHQDWM   92 (119)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCB--CCEEECSSSEEEEEEEECCHHHHH
T ss_pred             CCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEEC--ccEECCCCcEEEEEEEEEeHHHhC
Confidence            444444 34332 24568899999999986 53   468898887665432222  223345667777888887654444


Q ss_pred             CCeEEEEEEEeCC
Q psy12803        443 DFDTYRCISKNEV  455 (902)
Q Consensus       443 DsG~YtC~A~N~~  455 (902)
                      ....|+|.|....
T Consensus        93 ~g~~ytC~V~H~~  105 (119)
T d1igtb3          93 SGKEFKCKVNNKD  105 (119)
T ss_dssp             TTCEEEEEEECTT
T ss_pred             CCCeEEEEEEECC
Confidence            4568999998764

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.31  E-value=0.017  Score=50.20  Aligned_cols=64  Identities=16%  Similarity=0.358  Sum_probs=39.6

Q ss_pred             EEcCCeEEEEEecCCC--CCCceEEecCC--Cccc-----ccC---------Cccceecc-C----CcEEEEeeeeecCc
Q psy12803        303 VREGDNVRLRCVATGH--PKPSIIWKTSE--NKPI-----TLG---------SWKDSAVA-S----STLNFTRINRINMG  359 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~--P~p~v~W~k~~--~~~~-----~~~---------~~~~~~~~-~----~sL~I~~Vt~~DsG  359 (902)
                      |+.|++++|.|.++|.  ..-.+.|+|..  +.+.     ...         ..+..+.. +    -.|.|.+++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            5789999999999983  34457888742  1110     000         01222211 1    15999999999999


Q ss_pred             eeEEeec
Q psy12803        360 AYMCLAD  366 (902)
Q Consensus       360 ~YtC~A~  366 (902)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.30  E-value=0.08  Score=47.21  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=45.9

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee------eecC---------CceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL------IEHD---------GVKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l------~~~~---------~~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|+|.+.|+...  .+.|.+.-  ..+      ....         ..++.+..+....   +..|.|.++
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~---t~yL~~~sL   86 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTS---TAYLELNSL   86 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccc---eEeeeeccc
Confidence            457789999999999987533  57887532  111      1111         1233343332222   345999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12803        440 NISDFDTYRCISKN  453 (902)
Q Consensus       440 ~~~DsG~YtC~A~N  453 (902)
                      +.+|++.|.|....
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999997544

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.27  E-value=0.026  Score=50.54  Aligned_cols=71  Identities=21%  Similarity=0.402  Sum_probs=44.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cccC-C---------ccceecc-C--C--cEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----ITLG-S---------WKDSAVA-S--S--TLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~~~-~---------~~~~~~~-~--~--sL~I~~  352 (902)
                      ++..-.++.|+++.|+|.++|..  .-.+.|+|..  +.+     +... .         .+..+.. +  +  .|.|++
T Consensus         5 esG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~   84 (126)
T d1rjca1           5 ASGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNS   84 (126)
T ss_dssp             CBCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEec
Confidence            44556788999999999999843  3457888742  111     0100 0         1121211 1  1  489999


Q ss_pred             eeeecCceeEEeecC
Q psy12803        353 INRINMGAYMCLADN  367 (902)
Q Consensus       353 Vt~~DsG~YtC~A~N  367 (902)
                      ++.+|++.|.|....
T Consensus        85 l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          85 LKPEDTAMYYCAADT   99 (126)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             cCcccCceeEEEeec
Confidence            999999999997643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.25  E-value=0.019  Score=50.86  Aligned_cols=73  Identities=21%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cc-cC---------Cccceecc---C--CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----IT-LG---------SWKDSAVA---S--STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~~---~--~sL~I  350 (902)
                      +.++..-.++.|++|.|.|.++|..  .-.+.|+|..  +.+     +. ..         ..+..+..   .  ..|.|
T Consensus         4 L~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm   83 (119)
T d1rz7h1           4 LVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLEL   83 (119)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeee
Confidence            3455667789999999999999844  3457887742  111     00 00         01222211   1  15889


Q ss_pred             EeeeeecCceeEEeecC
Q psy12803        351 TRINRINMGAYMCLADN  367 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~N  367 (902)
                      .+++.+|++.|.|....
T Consensus        84 ~sL~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          84 SSLRSEDTAVYYCAADP  100 (119)
T ss_dssp             CSCCGGGCEEEEEEECT
T ss_pred             eccCcccceEEEEeecC
Confidence            99999999999997643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=94.24  E-value=0.026  Score=49.91  Aligned_cols=71  Identities=23%  Similarity=0.481  Sum_probs=44.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cccCC----------ccceec-c----CCcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----ITLGS----------WKDSAV-A----SSTLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~~~~----------~~~~~~-~----~~sL~I  350 (902)
                      +.++....++.|+++.|.|.++|..  .-.+.|.|.-  +.+     +....          .+..+. +    ...|.|
T Consensus         4 L~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i   83 (118)
T d1ct8b1           4 LLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQF   83 (118)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecc
Confidence            4456667889999999999999843  3357787632  111     00000          111111 1    125888


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          84 SSLTTEDSAIYYCAR   98 (118)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999964

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=94.21  E-value=0.016  Score=50.01  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      ..|+.++|.|.+.| .| ...|+|++++..+
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~   47 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPV   47 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeec
Confidence            45788899999999 45 5589999977543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.20  E-value=0.023  Score=50.88  Aligned_cols=72  Identities=19%  Similarity=0.345  Sum_probs=45.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCCC--ceEEecCC--Ccc-----c-ccC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPKP--SIIWKTSE--NKP-----I-TLG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~p--~v~W~k~~--~~~-----~-~~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|+++.|+|.++|....  .+.|+|.-  +.+     + ...         ..+..+. ++    -.|.|
T Consensus         4 L~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~   83 (128)
T d2nxyd1           4 LVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLEL   83 (128)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeee
Confidence            445666778999999999999985433  46787631  111     0 000         1122221 11    25888


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          84 RNLRSDDTAVYFCAGV   99 (128)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeccccCceEEEEeEE
Confidence            8999999999999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.16  E-value=0.024  Score=50.69  Aligned_cols=71  Identities=17%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------CccceeccC-----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVAS-----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~~-----~sL~I  350 (902)
                      +.++....++.|++|.|.|.++|..  .-.+.|+|.-  +.+.      ...         ..+..+..+     ..|.|
T Consensus         4 L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~   83 (127)
T d1n0xh1           4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   83 (127)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEE
Confidence            3456667899999999999999844  2347787732  1110      000         011112111     24888


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|.-
T Consensus        84 ~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          84 RSLRSADTAVYYCAR   98 (127)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             EccCCCCceEEEEEe
Confidence            899999999999963

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.13  E-value=0.018  Score=49.99  Aligned_cols=29  Identities=17%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCc
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENK  331 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~  331 (902)
                      +..|+..+|.|.+.| .| ...|.|++++..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~   45 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVP   45 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCee
Confidence            346888899999999 55 467999997654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.11  E-value=0.025  Score=50.58  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=44.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|+++.|+|.++|..  .-.+.|.|.-  +.+.      ...         ..+..+.. +    -.|.|
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~   83 (127)
T d2fx7h1           4 LVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLEL   83 (127)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeee
Confidence            3345556788999999999999843  3457888632  1110      000         01111111 1    25889


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      ++++.+|++.|.|..
T Consensus        84 ~sL~~eDTavYYCAR   98 (127)
T d2fx7h1          84 NSLRPEDTAVYYCAR   98 (127)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCcccceEEEEee
Confidence            999999999999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.11  E-value=0.021  Score=50.85  Aligned_cols=71  Identities=18%  Similarity=0.381  Sum_probs=44.4

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceecc---C--CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAVA---S--STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~~---~--~sL~I  350 (902)
                      +.++....++.|++|+|.|.++|..  .-.+.|+|..  +.+     + ...         ..+..+..   .  ..|.|
T Consensus         4 L~esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i   83 (123)
T d1mqkh_           4 LQESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQM   83 (123)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccce
Confidence            3445556788999999999999854  3347787732  111     0 000         01111111   1  14889


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      ++++.+|++.|.|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (123)
T d1mqkh_          84 SSLKSEDTAMYYCVR   98 (123)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eeeccCcccceeEEe
Confidence            999999999999964

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.015  Score=48.77  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             eecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC-CCCeEEEEEEE
Q psy12803        381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFDTYRCISK  452 (902)
Q Consensus       381 v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~-~DsG~YtC~A~  452 (902)
                      -..|.+|+|+|...+.  -.|.|.+++..+.......                |.+.+.+. +|+|.|.|...
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~~----------------L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDKH----------------LVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECSCCCSE----------------EEEESCCTTTSCEEEEEECS
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCCCCCcE----------------EEEccccccccCcceEEecC
Confidence            3469999999986643  4699987776664332221                77777655 89999999643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.053  Score=43.94  Aligned_cols=59  Identities=12%  Similarity=0.121  Sum_probs=38.3

Q ss_pred             EEcCCeEEEEEecCCCC--CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATGHP--KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G~P--~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N  367 (902)
                      ...|..+.|.|..+...  .-.-+|.|++..+......    ...-.+.|.  ..+|+|.|.|+...
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~----~~~tey~V~--~~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVD--SDDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----CSEEEEEEC--GGGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC----CCceEEEEe--cCCCCceEEEEEcC
Confidence            45789999999987743  3346799977665432221    111234554  37899999998643

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.02  E-value=0.036  Score=49.85  Aligned_cols=72  Identities=15%  Similarity=0.267  Sum_probs=45.5

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------CccceeccC-----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVAS-----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~~-----~sL~I  350 (902)
                      +.++....++.|+++.|+|.++|..  .-.+.|+|.-  +.+.      ...         ..+..+..+     ..|.|
T Consensus         4 L~eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i   83 (135)
T d1ieha_           4 LQASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQM   83 (135)
T ss_dssp             EEEECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEE
T ss_pred             EeeECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecE
Confidence            3345556789999999999999843  3457888642  1111      000         012222111     25889


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~~L~~eDTAvYYCAr~   99 (135)
T d1ieha_          84 NSLKSEDTAVYYCAKY   99 (135)
T ss_dssp             ESCCSSSCEEEEEEEB
T ss_pred             eeeCcccceeeEEEEe
Confidence            9999999999999654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.97  E-value=0.03  Score=49.94  Aligned_cols=70  Identities=16%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC--CceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK--PSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~--p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++|.|.|.++|...  -.+.|+|..  +.+.      ...         ..+..+.. +    -.|.|
T Consensus         4 L~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~   83 (124)
T d2b1hh1           4 LEQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQW   83 (124)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEee
Confidence            44566678899999999999998542  347888732  1110      000         01111111 1    25888


Q ss_pred             EeeeeecCceeEEe
Q psy12803        351 TRINRINMGAYMCL  364 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~  364 (902)
                      .+++.+|++.|.|.
T Consensus        84 ~~L~~eDTA~YYCA   97 (124)
T d2b1hh1          84 SSLKPSDTALYYCA   97 (124)
T ss_dssp             SSCCGGGCEEEEEE
T ss_pred             eccccccceEEEEe
Confidence            89999999999995

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.96  E-value=0.055  Score=48.52  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             eeeeecCceEEEEEEeeccCCc--eEEEEecC--Cee-----eecC-C---------ceEEEeecCCCceeeEeEEEEec
Q psy12803        378 RVGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL-----IEHD-G---------VKYSISDVDKGSYQYIMQLNISN  438 (902)
Q Consensus       378 ~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l-----~~~~-~---------~~~~~~~~~~~s~~~~stL~I~~  438 (902)
                      ...+..|++++|+|.+.|+...  .+.|++..  ..+     +... +         .++.+..+....   +..|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~---t~yL~~~s   85 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTS---TAYMELSS   85 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccc---eEEeeeee
Confidence            3457889999999999987533  67887642  111     1111 1         123333322222   34599999


Q ss_pred             cCCCCCeEEEEEE
Q psy12803        439 VNISDFDTYRCIS  451 (902)
Q Consensus       439 V~~~DsG~YtC~A  451 (902)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtA~YYCAr   98 (130)
T d1rzga1          86 LRSEDTAVFYCAS   98 (130)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCccEEEEEEE
Confidence            9999999999965

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.95  E-value=0.035  Score=49.22  Aligned_cols=73  Identities=21%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             ceeeeecCceEEEEEEeeccCCc--eEEEEec--CCeee-----e---cC---------CceEEEeecCCCceeeEeEEE
Q psy12803        377 RRVGVPIGRTATLECEVEAFPLS--VRYWEFI--DGTLI-----E---HD---------GVKYSISDVDKGSYQYIMQLN  435 (902)
Q Consensus       377 ~~~~v~~G~~v~L~C~a~g~P~P--~v~W~k~--~~~l~-----~---~~---------~~~~~~~~~~~~s~~~~stL~  435 (902)
                      ....+..|++++|.|.+.|+...  .+.|.+.  +..+.     .   ..         ..++.+..+...   .+..|.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~---nt~yL~   84 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSR---NSIYLQ   84 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTT---SEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcccccc---ceeece
Confidence            34568899999999999987644  5678763  22211     0   01         012222222221   244599


Q ss_pred             EeccCCCCCeEEEEEEE
Q psy12803        436 ISNVNISDFDTYRCISK  452 (902)
Q Consensus       436 I~~V~~~DsG~YtC~A~  452 (902)
                      |.+++.+|++.|.|...
T Consensus        85 ~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EESCCGGGCEECEEEEE
T ss_pred             ecccCCCcceEEEEecc
Confidence            99999999999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.93  E-value=0.027  Score=50.10  Aligned_cols=71  Identities=18%  Similarity=0.357  Sum_probs=44.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----c-cC---------Cccceecc-C----CcEEEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----T-LG---------SWKDSAVA-S----STLNFT  351 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~-~~---------~~~~~~~~-~----~sL~I~  351 (902)
                      .++..-.++.|++|+|.|.++|..  .-.+.|+|..  +.+.     . ..         ..+..+.. +    ..|.|+
T Consensus         5 ~esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~   84 (121)
T d1ol0a_           5 VESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMN   84 (121)
T ss_dssp             EEEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeee
Confidence            344556788999999999999843  3347787632  1111     0 00         01111211 1    159999


Q ss_pred             eeeeecCceeEEeec
Q psy12803        352 RINRINMGAYMCLAD  366 (902)
Q Consensus       352 ~Vt~~DsG~YtC~A~  366 (902)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          85 SLRAEDTAVYYCARE   99 (121)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecccccceEEEEEEe
Confidence            999999999999654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.89  E-value=0.018  Score=51.73  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=45.1

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc--c---cc-----CC----------ccceecc-----CC
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP--I---TL-----GS----------WKDSAVA-----SS  346 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~--~---~~-----~~----------~~~~~~~-----~~  346 (902)
                      .++..-.++.|++|+|+|.++|..  .-.+.|+|..  +.+  +   ..     ..          .+..+..     .-
T Consensus         5 ~esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~   84 (127)
T d1i3ua_           5 QESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTV   84 (127)
T ss_dssp             EEESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEE
T ss_pred             EeECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEE
Confidence            345556688999999999999853  3457898742  111  1   00     00          1111111     12


Q ss_pred             cEEEEeeeeecCceeEEeec
Q psy12803        347 TLNFTRINRINMGAYMCLAD  366 (902)
Q Consensus       347 sL~I~~Vt~~DsG~YtC~A~  366 (902)
                      .|.|++++.+|++.|.|...
T Consensus        85 ~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          85 NLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EEeeecccccceeEEEEEEE
Confidence            58999999999999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.85  E-value=0.024  Score=50.75  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=43.5

Q ss_pred             cCCcEEEEcCCeEEEEEecCCCCC---CceEEecC--CCccc-----c-cC--------Cccceec-cC----CcEEEEe
Q psy12803        297 SSSPIVVREGDNVRLRCVATGHPK---PSIIWKTS--ENKPI-----T-LG--------SWKDSAV-AS----STLNFTR  352 (902)
Q Consensus       297 ~~~~v~v~eGe~v~L~C~a~G~P~---p~v~W~k~--~~~~~-----~-~~--------~~~~~~~-~~----~sL~I~~  352 (902)
                      ++..-.++.|+++.|.|.++|...   -.+.|+|.  ++.+.     . ..        ..+..+. ++    -.|.|.+
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~   85 (127)
T d3cx5j1           6 ESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNS   85 (127)
T ss_dssp             EEECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceec
Confidence            444456889999999999998543   35789873  22110     0 00        0111111 11    2589999


Q ss_pred             eeeecCceeEEee
Q psy12803        353 INRINMGAYMCLA  365 (902)
Q Consensus       353 Vt~~DsG~YtC~A  365 (902)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYyCAr   98 (127)
T d3cx5j1          86 VTTEDTATYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEEeee
Confidence            9999999999963

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.83  E-value=0.032  Score=49.63  Aligned_cols=72  Identities=18%  Similarity=0.307  Sum_probs=45.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++++|+|.++|..  .-.+.|+|..  +.+.      ...         ..+..+.. +    -.|.|
T Consensus         4 L~esG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m   83 (122)
T d1bz7b1           4 LVESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQM   83 (122)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EeeECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeee
Confidence            3455566788999999999999854  3347888731  1110      000         01111111 1    25888


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          84 TSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeecccCceEEEeecC
Confidence            9999999999999653

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.80  E-value=0.032  Score=49.84  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=44.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----c-ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----I-TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~-~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++..-.++.|++++|+|.++|..  .-.+.|+|..  +.+     + ...         ..+..+.. +    -.|.|
T Consensus         4 L~eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~   83 (126)
T d1dfbh1           4 LVESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQM   83 (126)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeee
Confidence            3455567789999999999999854  3357787732  111     0 000         01111211 1    15889


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDtavYYCAr   98 (126)
T d1dfbh1          84 NSLRAEDMALYYCVK   98 (126)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eeeccCcceEEEEEe
Confidence            999999999999964

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.73  E-value=0.031  Score=49.90  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++..-.++.|++++|+|.++|..  .-.+.|+|..  +.+.      ...         ..+..+.. +    -.|.|
T Consensus         4 L~eSG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm   83 (125)
T d1op3h1           4 LVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQM   83 (125)
T ss_dssp             EEEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeee
Confidence            3445556789999999999998843  3457888742  1110      000         01122211 1    25888


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          84 HKMRVEDTAIYYCARK   99 (125)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCCccceeEeEeec
Confidence            9999999999999753

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.68  E-value=0.03  Score=49.60  Aligned_cols=71  Identities=17%  Similarity=0.327  Sum_probs=45.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCCC--CceEEecCC--Ccc-----cc-cC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHPK--PSIIWKTSE--NKP-----IT-LG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P~--p~v~W~k~~--~~~-----~~-~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++..-.++.|++++|.|.++|...  -.+.|.|.-  +.+     +. ..         ..+..+. ++    -.|.|
T Consensus         4 L~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m   83 (120)
T d1ad9b1           4 LVQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMEL   83 (120)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccc
Confidence            44566677999999999999998442  347787632  111     00 00         0111111 11    25888


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDTAvYYCAr   98 (120)
T d1ad9b1          84 SSLRSEDTAFYFCAR   98 (120)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEEE
Confidence            899999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.67  E-value=0.031  Score=49.98  Aligned_cols=71  Identities=15%  Similarity=0.336  Sum_probs=45.2

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc------cccC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP------ITLG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~------~~~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|+++.|.|.++|..  .-.+.|+|.-  +.+      ....         ..+..+. ++    -.|.|
T Consensus         3 L~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m   82 (126)
T d1lmka1           3 LQQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQL   82 (126)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eeeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeee
Confidence            4456667899999999999999854  3347787631  111      0000         1111121 11    25888


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        83 ~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          83 SSLTSEDSAVYYCAR   97 (126)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999953

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.66  E-value=0.032  Score=49.62  Aligned_cols=72  Identities=21%  Similarity=0.332  Sum_probs=46.0

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cc-cC---------Cccceec-cC----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----IT-LG---------SWKDSAV-AS----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~-~~----~sL~I  350 (902)
                      +.++....++.|+++.|+|.++|..  .-.+.|.|.-  +.+     +. ..         ..+..+. ++    -.|.|
T Consensus         4 L~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~   83 (124)
T d1yedb1           4 LQQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQL   83 (124)
T ss_dssp             EEECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EEeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecc
Confidence            4456667789999999999999854  3357787732  111     10 00         0111121 11    14889


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          84 SSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             ESCCGGGCEEEEEEEC
T ss_pred             cccCCCcceEEEeccc
Confidence            9999999999999653

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.63  E-value=0.024  Score=50.94  Aligned_cols=72  Identities=17%  Similarity=0.302  Sum_probs=45.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----ccC-C---------ccceec-cC--C--cEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----TLG-S---------WKDSAV-AS--S--TLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~~~-~---------~~~~~~-~~--~--sL~I  350 (902)
                      +.++....++.|++++|+|.++|..  ...+.|+|..  +.+.     ... .         .+..+. ++  +  .|.|
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~   83 (130)
T d1rzga1           4 LVQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMEL   83 (130)
T ss_dssp             CEECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeee
Confidence            3455667789999999999999853  3458888732  1110     000 0         111111 11  1  4888


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          84 SSLRSEDTAVFYCASP   99 (130)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             eecCCCccEEEEEEEe
Confidence            9999999999999753

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=93.62  E-value=0.031  Score=49.40  Aligned_cols=70  Identities=19%  Similarity=0.357  Sum_probs=43.8

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----ccC---------Cccceecc-C----CcEEEEe
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----TLG---------SWKDSAVA-S----STLNFTR  352 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~~~---------~~~~~~~~-~----~sL~I~~  352 (902)
                      .++....++.|+++.|.|.++|..  .-.+.|+|..  +.+.     ...         ..+..+.. +    ..|.|.+
T Consensus         5 ~eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~   84 (118)
T d1lo4h1           5 VETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSR   84 (118)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECS
T ss_pred             eeECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccc
Confidence            344556688999999999999843  3457788742  1110     000         01111211 1    1588899


Q ss_pred             eeeecCceeEEee
Q psy12803        353 INRINMGAYMCLA  365 (902)
Q Consensus       353 Vt~~DsG~YtC~A  365 (902)
                      ++.+|++.|.|..
T Consensus        85 l~~eDtA~YyCAr   97 (118)
T d1lo4h1          85 LRSEDTAIYYCAR   97 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEecc
Confidence            9999999999953

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.024  Score=46.93  Aligned_cols=61  Identities=18%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             ecCceEEEEEEeeccCCceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCC-CCCeEEEEEEEe
Q psy12803        382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNI-SDFDTYRCISKN  453 (902)
Q Consensus       382 ~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~-~DsG~YtC~A~N  453 (902)
                      ..|.+|+|+|.-.  ....|.|.+++..+...... .....  ..       .|.+.+.++ +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~--~~-------~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSD--ED-------HLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEE--TT-------EEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccc--cc-------eEEecccCccccCceEEEEcCC
Confidence            4699999999632  34679998888766443221 11111  11       288888776 799999999843

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.025  Score=48.00  Aligned_cols=28  Identities=25%  Similarity=0.615  Sum_probs=22.5

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCc
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENK  331 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~  331 (902)
                      ..|+.++|.|.+.| +| ...|+|++++..
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~   42 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEV   42 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEE
Confidence            35789999999999 55 458999997754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=93.55  E-value=0.025  Score=48.63  Aligned_cols=65  Identities=14%  Similarity=0.145  Sum_probs=37.9

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcccccC-CccceeccCCcEEE---EeeeeecCceeEEeecC
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKPITLG-SWKDSAVASSTLNF---TRINRINMGAYMCLADN  367 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~-~~~~~~~~~~sL~I---~~Vt~~DsG~YtC~A~N  367 (902)
                      +..|+.++|.|.+.| .| ...|+|++++..+.... ........+++..+   ..+..+|...|+|++..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H   86 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEH   86 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEEC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEe
Confidence            346788899999999 44 46799999876543211 11111223333222   23444556678887765

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.0099  Score=51.88  Aligned_cols=30  Identities=23%  Similarity=0.496  Sum_probs=23.4

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      +..++.++|.|.+.+ +| ...|+|++++..+
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~   48 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQEL   48 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEEC
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEc
Confidence            446889999999998 55 3489999976554

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.46  E-value=0.12  Score=46.39  Aligned_cols=71  Identities=21%  Similarity=0.369  Sum_probs=45.6

Q ss_pred             eeeecCceEEEEEEeeccCCc--eEEEEecC--Cee--e---e---cC---------CceEEEeecCCCceeeEeEEEEe
Q psy12803        379 VGVPIGRTATLECEVEAFPLS--VRYWEFID--GTL--I---E---HD---------GVKYSISDVDKGSYQYIMQLNIS  437 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P~P--~v~W~k~~--~~l--~---~---~~---------~~~~~~~~~~~~s~~~~stL~I~  437 (902)
                      ..+..|++++|.|.+.|+...  .+.|++..  ..+  +   .   ..         ..++.+.....   ..+..|.|.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s---~nt~~Lq~~   86 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDS---KNTLYLQMN   86 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGG---GTEEEEEEC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccc---cceeeccee
Confidence            457889999999999987643  67787542  111  0   0   00         11233333222   124559999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy12803        438 NVNISDFDTYRCISK  452 (902)
Q Consensus       438 ~V~~~DsG~YtC~A~  452 (902)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          87 SLKTEDTAVYSCTTD  101 (131)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCCceEEEEecc
Confidence            999999999999754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.40  E-value=0.021  Score=50.48  Aligned_cols=70  Identities=26%  Similarity=0.355  Sum_probs=43.6

Q ss_pred             eeecCceEEEEEEeeccCCc--eEEEEec--CCee--e---ecCC---------ceEEEeecCCCceeeEeEEEEeccCC
Q psy12803        380 GVPIGRTATLECEVEAFPLS--VRYWEFI--DGTL--I---EHDG---------VKYSISDVDKGSYQYIMQLNISNVNI  441 (902)
Q Consensus       380 ~v~~G~~v~L~C~a~g~P~P--~v~W~k~--~~~l--~---~~~~---------~~~~~~~~~~~s~~~~stL~I~~V~~  441 (902)
                      .+..|++++|+|.+.|+...  .+.|++.  +..+  +   ....         .++.+..+..   ..+..|.|.+++.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s---~~tv~L~~~~L~~   87 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS---KNQVFLKMNSLQT   87 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGG---GTEEECCEESCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccc---cchhhcceeccCC
Confidence            46789999999999987543  5778754  2211  1   1111         1122222111   1234599999999


Q ss_pred             CCCeEEEEEEE
Q psy12803        442 SDFDTYRCISK  452 (902)
Q Consensus       442 ~DsG~YtC~A~  452 (902)
                      +|++.|.|...
T Consensus        88 eDTAvYyCAr~   98 (116)
T d1fn4b1          88 DDTGTYYCTRD   98 (116)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCCEEEEEEee
Confidence            99999999653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.37  E-value=0.92  Score=46.16  Aligned_cols=150  Identities=12%  Similarity=0.113  Sum_probs=88.1

Q ss_pred             EEE--cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCc-cEEEEEcC-CCcEEEEeeC
Q psy12803        638 VVF--NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENG-LWVIYGLS-NNNTAVTKLD  713 (902)
Q Consensus       638 vvy--ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~G-LWviY~~~-~~~ivvskld  713 (902)
                      +++  +|.|||.-.....|.|+|..++.......-..           ..-..||+|..| |||..... .....|.+++
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~-----------~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK-----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS-----------SSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC-----------CCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            455  58899988777899999999886643321111           012357788775 55554332 3456677888


Q ss_pred             CCCcceeEEEEeccccccccc--eEEEecEEEEEeecCC--CcceEEEEEeCCCCceeee--eeeecCCCCCceeeecCC
Q psy12803        714 TATLQIQYTWNITLLHKKVGD--MFVVCGVLYVVDSVTD--RNTNIRFALDLYKNDLLEV--SLNFTNPFTNTTMITYNS  787 (902)
Q Consensus       714 ~~~l~v~~tw~t~~~k~~~~n--aFmvCGvLY~~~s~~~--~~~~I~y~~Dt~~~~~~~~--~i~f~~~~~~~~~l~YnP  787 (902)
                      +.+-.+.......- ....-|  +|-.=|-||+++....  ....-.|.+|........+  .+.++      .-|.++|
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p------nGia~s~  186 (319)
T d2dg1a1         114 ENGDNLQDIIEDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA------NGIALST  186 (319)
T ss_dssp             TTSCSCEEEECSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE------EEEEECT
T ss_pred             CCCceeeeeccCCC-cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee------eeeeecc
Confidence            87765544432211 111112  3444588999876332  2223456667665543332  23333      3688999


Q ss_pred             CCCeEEEEeC--CeEEEEEe
Q psy12803        788 RYKDLYTWDR--GNSLTYPI  805 (902)
Q Consensus       788 ~d~~LY~wd~--g~~~~Y~v  805 (902)
                      ..+.||+=|-  +.+..|++
T Consensus       187 dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEE
T ss_pred             ccceEEEecccCCceEEEEE
Confidence            9999999885  55555554

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.37  E-value=0.03  Score=50.14  Aligned_cols=72  Identities=21%  Similarity=0.367  Sum_probs=44.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|++++|.|.++|..  .-.+.|+|..  +.+.      ...         ..+..+.. +    ..|.|
T Consensus         4 L~esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~   83 (127)
T d2fb4h1           4 LVQSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQM   83 (127)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeee
Confidence            3345556788999999999999843  3357787732  1110      000         01111111 1    25889


Q ss_pred             EeeeeecCceeEEeec
Q psy12803        351 TRINRINMGAYMCLAD  366 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A~  366 (902)
                      ++++.+|++.|.|...
T Consensus        84 ~~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          84 DSLRPEDTGVYFCARD   99 (127)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeeeecceeEEEEEEe
Confidence            9999999999999754

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.31  E-value=0.043  Score=48.52  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=44.0

Q ss_pred             ecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------cc-C----------Cccceec-cC----CcEE
Q psy12803        296 FSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TL-G----------SWKDSAV-AS----STLN  349 (902)
Q Consensus       296 ~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~-~----------~~~~~~~-~~----~sL~  349 (902)
                      .++....++.|++++|.|.++|..  .-.+.|+|..  +.+.      .. .          ..+..+. ++    -.|.
T Consensus         5 ~esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~   84 (120)
T d1dlfh_           5 EESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQ   84 (120)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eeECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccc
Confidence            344556688999999999999743  3457888732  1110      00 0          0111221 11    1588


Q ss_pred             EEeeeeecCceeEEee
Q psy12803        350 FTRINRINMGAYMCLA  365 (902)
Q Consensus       350 I~~Vt~~DsG~YtC~A  365 (902)
                      |.+++.+|++.|.|..
T Consensus        85 ~~~L~~eDtAvYYCA~  100 (120)
T d1dlfh_          85 MNTLRAEDTGIYYCTG  100 (120)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             eeeccCCCceEEEeeE
Confidence            8999999999999965

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=93.12  E-value=0.031  Score=48.60  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             EEcCCeEEEEEecCC-CC-CCceEEecCCCccc
Q psy12803        303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKPI  333 (902)
Q Consensus       303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~  333 (902)
                      +....+++|.|.+.+ .| ...|+|++++..+.
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~   53 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTI   53 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCC
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEcc
Confidence            445778999999998 44 34699999876543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.09  E-value=0.072  Score=46.80  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             eeeecCceEEEEEEeeccC--CceEEEEecC--Ce------eeecCC---------ceEEEeecCCCceeeEeEEEEecc
Q psy12803        379 VGVPIGRTATLECEVEAFP--LSVRYWEFID--GT------LIEHDG---------VKYSISDVDKGSYQYIMQLNISNV  439 (902)
Q Consensus       379 ~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~--~~------l~~~~~---------~~~~~~~~~~~s~~~~stL~I~~V  439 (902)
                      ..+..|++++|+|.+.|+.  .-.+.|++.-  ..      +.....         .++.+..+....   +..|.|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~---t~~L~~~sL   86 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKN---TLYLQMNSL   86 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTT---EEEEEECSC
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccc---eEEeeeccc
Confidence            4578999999999999764  3356787642  11      101111         234444332222   445999999


Q ss_pred             CCCCCeEEEEEE
Q psy12803        440 NISDFDTYRCIS  451 (902)
Q Consensus       440 ~~~DsG~YtC~A  451 (902)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (117)
T d1b2wh1          87 RPEDTAVYYCAR   98 (117)
T ss_dssp             CGGGCEEEECCE
T ss_pred             cCCcceEEEEcc
Confidence            999999999953

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.07  E-value=0.049  Score=49.02  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=44.7

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC---------Cccceecc-C----CcEEE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG---------SWKDSAVA-S----STLNF  350 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~---------~~~~~~~~-~----~sL~I  350 (902)
                      +.++....++.|+++.|.|.++|..  .-.+.|+|.-  +.+.      ...         ..+..+.. +    ..|.|
T Consensus         3 L~esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~   82 (133)
T d1rzfh1           3 LVQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHL   82 (133)
T ss_dssp             EEECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eeeECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEee
Confidence            3455667789999999999999854  3347787732  1110      000         01111211 1    25888


Q ss_pred             EeeeeecCceeEEee
Q psy12803        351 TRINRINMGAYMCLA  365 (902)
Q Consensus       351 ~~Vt~~DsG~YtC~A  365 (902)
                      .+++.+|++.|.|..
T Consensus        83 ~~L~~eDtA~YYCAr   97 (133)
T d1rzfh1          83 RGLRSDDTAVYYCAS   97 (133)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             ccCCCCCCEEEEeee
Confidence            899999999999954

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.06  E-value=0.039  Score=48.98  Aligned_cols=73  Identities=16%  Similarity=0.316  Sum_probs=45.9

Q ss_pred             eecCCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc------ccC-----------Cccceecc-C----CcE
Q psy12803        295 IFSSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI------TLG-----------SWKDSAVA-S----STL  348 (902)
Q Consensus       295 i~~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~------~~~-----------~~~~~~~~-~----~sL  348 (902)
                      +.++..-.++.|++++|.|.++|..  .-.+.|+|..  +.+.      ...           ..+..+.. +    -.|
T Consensus         4 L~esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L   83 (122)
T d1q9rb1           4 LVESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYL   83 (122)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecc
Confidence            3345556788999999999999844  3357898642  1110      000           01111211 1    148


Q ss_pred             EEEeeeeecCceeEEeecC
Q psy12803        349 NFTRINRINMGAYMCLADN  367 (902)
Q Consensus       349 ~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .|.+++.+|++.|.|....
T Consensus        84 ~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          84 QMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             EECSCCGGGCEEEEEEECC
T ss_pred             ceeeeccCcceEEEEEecC
Confidence            8899999999999997644

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=92.91  E-value=0.034  Score=47.47  Aligned_cols=29  Identities=17%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             EcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803        304 REGDNVRLRCVATG-HP-KPSIIWKTSENKP  332 (902)
Q Consensus       304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~  332 (902)
                      ..++.++|.|.+.+ .| ...|+|.+++..+
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~   44 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEE   44 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEc
Confidence            34677899999999 44 5789999977543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.80  E-value=0.013  Score=51.83  Aligned_cols=68  Identities=22%  Similarity=0.407  Sum_probs=42.3

Q ss_pred             CCcEEEEcCCeEEEEEecCCCC--CCceEEecCC--Cccc-----ccCC---------ccceecc-C----CcEEEEeee
Q psy12803        298 SSPIVVREGDNVRLRCVATGHP--KPSIIWKTSE--NKPI-----TLGS---------WKDSAVA-S----STLNFTRIN  354 (902)
Q Consensus       298 ~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~~-----~~~~---------~~~~~~~-~----~sL~I~~Vt  354 (902)
                      +....++.|++++|+|.++|..  .-.+.|+|..  +.+.     ....         .+..+.. +    -.|.|++++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (116)
T d1fn4b1           7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (116)
T ss_dssp             ECCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCC
T ss_pred             ECCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccC
Confidence            3344578899999999999843  3357788731  1111     0000         1111111 1    158899999


Q ss_pred             eecCceeEEee
Q psy12803        355 RINMGAYMCLA  365 (902)
Q Consensus       355 ~~DsG~YtC~A  365 (902)
                      .+|++.|.|..
T Consensus        87 ~eDTAvYyCAr   97 (116)
T d1fn4b1          87 TDDTGTYYCTR   97 (116)
T ss_dssp             CCCCEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999964

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.72  E-value=0.063  Score=46.29  Aligned_cols=61  Identities=20%  Similarity=0.396  Sum_probs=35.1

Q ss_pred             cCCeEEEEEecCCCC--CCceEEecCC--Ccc-----cc-cC---------CccceeccC-----CcEEEEeeeeecCce
Q psy12803        305 EGDNVRLRCVATGHP--KPSIIWKTSE--NKP-----IT-LG---------SWKDSAVAS-----STLNFTRINRINMGA  360 (902)
Q Consensus       305 eGe~v~L~C~a~G~P--~p~v~W~k~~--~~~-----~~-~~---------~~~~~~~~~-----~sL~I~~Vt~~DsG~  360 (902)
                      .|++|+|+|.++|..  .--+.|+|..  +.+     +. ..         ..+..+..+     ..|.|++++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            389999999999854  3358898642  111     00 00         112222211     259999999999999


Q ss_pred             eEEee
Q psy12803        361 YMCLA  365 (902)
Q Consensus       361 YtC~A  365 (902)
                      |.|..
T Consensus        81 YYCAr   85 (103)
T d1oari_          81 YYCAR   85 (103)
T ss_dssp             EEEEE
T ss_pred             EEeEE
Confidence            99964

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.51  E-value=0.038  Score=48.35  Aligned_cols=70  Identities=14%  Similarity=0.212  Sum_probs=44.1

Q ss_pred             cCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803        383 IGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD  456 (902)
Q Consensus       383 ~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G  456 (902)
                      .+..++|.|.+.++ | ...|.|.+++...    ..........++.|...+.|.|..-.....-.|+|.|.....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~----~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   97 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSD----YKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEAL   97 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTT----EEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETTT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCC----cEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            45679999999986 4 3479997665321    112222334566777777777654432224479999988643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.48  E-value=0.045  Score=47.08  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             cCCeEEEEEecCC-CCC---CceEEecCCCcccccCCccceeccCCcEEEE---eeeee--cCc-eeEEeecC
Q psy12803        305 EGDNVRLRCVATG-HPK---PSIIWKTSENKPITLGSWKDSAVASSTLNFT---RINRI--NMG-AYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P~---p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~---~Vt~~--DsG-~YtC~A~N  367 (902)
                      .+.+++|.|.+.+ .|.   ..|+|++++...............+++..+.   .|..+  +.| .|+|++.+
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H   87 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNS   87 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEe
Confidence            4678899999987 453   5788999887654322222222334432222   34443  355 59999887

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.0068  Score=52.37  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             cCceeeeecCceEEEEEEeecc--CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803        375 RNRRVGVPIGRTATLECEVEAF--PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS  451 (902)
Q Consensus       375 ~p~~~~v~~G~~v~L~C~a~g~--P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A  451 (902)
                      .|....+..+..++|.|.+.++  |. ..|+|++++........    .....++.+...+.|.|..-.....-.|+|.|
T Consensus         9 ~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~----~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V   84 (101)
T d1ow0a1           9 RPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGP----PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA   84 (101)
T ss_dssp             CCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECC----CCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred             CCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecc----eEECCCCCEEEEEEEEEcHHHcCCCCeEEEEE
Confidence            3444446678899999999985  43 37999877754322211    12344556666666665443333356999999


Q ss_pred             EeCC
Q psy12803        452 KNEV  455 (902)
Q Consensus       452 ~N~~  455 (902)
                      ....
T Consensus        85 ~H~~   88 (101)
T d1ow0a1          85 AYPE   88 (101)
T ss_dssp             CCSS
T ss_pred             EeCC
Confidence            8754

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.095  Score=44.30  Aligned_cols=63  Identities=16%  Similarity=0.308  Sum_probs=34.6

Q ss_pred             cCCeEEEEEecCC-CC-CCceEEecCCCcccccCCc-cceeccCCc---EEEEeeeeecCceeEEeecC
Q psy12803        305 EGDNVRLRCVATG-HP-KPSIIWKTSENKPITLGSW-KDSAVASST---LNFTRINRINMGAYMCLADN  367 (902)
Q Consensus       305 eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~~~~~~~-~~~~~~~~s---L~I~~Vt~~DsG~YtC~A~N  367 (902)
                      .+..++|.|.+.| .| ...|+|++++..+...... ......+++   .....+..++...|+|++..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H   82 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQH   82 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEE
Confidence            4568999999999 34 4568999977654322110 111112221   12223344444567777765