Psyllid ID: psy12852
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1102 | 2.2.26 [Sep-21-2011] | |||||||
| Q4R3Y4 | 643 | Long-chain fatty acid tra | N/A | N/A | 0.490 | 0.841 | 0.433 | 1e-129 | |
| Q60714 | 646 | Long-chain fatty acid tra | yes | N/A | 0.475 | 0.811 | 0.427 | 1e-128 | |
| Q6P1M0 | 643 | Long-chain fatty acid tra | yes | N/A | 0.491 | 0.842 | 0.425 | 1e-127 | |
| P97849 | 646 | Long-chain fatty acid tra | yes | N/A | 0.460 | 0.784 | 0.433 | 1e-127 | |
| Q91VE0 | 643 | Long-chain fatty acid tra | no | N/A | 0.472 | 0.810 | 0.445 | 1e-127 | |
| Q5RDY4 | 643 | Long-chain fatty acid tra | yes | N/A | 0.490 | 0.841 | 0.424 | 1e-127 | |
| Q6PCB7 | 646 | Long-chain fatty acid tra | no | N/A | 0.474 | 0.809 | 0.428 | 1e-126 | |
| Q3ZKN0 | 646 | Long-chain fatty acid tra | no | N/A | 0.477 | 0.814 | 0.427 | 1e-124 | |
| O14975 | 620 | Very long-chain acyl-CoA | no | N/A | 0.467 | 0.830 | 0.413 | 1e-104 | |
| O35488 | 620 | Very long-chain acyl-CoA | no | N/A | 0.466 | 0.829 | 0.393 | 1e-100 |
| >sp|Q4R3Y4|S27A4_MACFA Long-chain fatty acid transport protein 4 OS=Macaca fascicularis GN=SLC27A4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/561 (43%), Positives = 349/561 (62%), Gaps = 20/561 (3%)
Query: 490 ASNARSTNDAAATTVKNLEA-----QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 544
AS R D A + + Q+DEYS+ +A LQ G GDV A+ ENR E+V
Sbjct: 81 ASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNEFV 140
Query: 545 GVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKL 603
G+WLG AKLGV +ALINTNL++ L+H ++T +++A++ + I I S+ P + L
Sbjct: 141 GLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAICEIHASLDPSLSL 200
Query: 604 FLLDETKPD-LP----NLSDLMKTTPASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIM 657
F +P+ +P +L L++ P PS P + +D L YIYTSGTTGLPKAAI+
Sbjct: 201 FCSGSWEPNAVPTSTEHLDPLLEDAPKH--LPSCPDKGFTDKLFYIYTSGTTGLPKAAIV 258
Query: 658 PNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717
+ + + + + D+IY+CLP+YHSAG ++G L+ G ++ IR KFSAS
Sbjct: 259 VHSRYYRMAALVYYGFRMRPNDIIYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASR 318
Query: 718 YFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ 777
++ DC KYKC YIGE+CRYLL EA+ HQV +G G+R IW F RFH+
Sbjct: 319 FWDDCIKYKCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIP 378
Query: 778 TIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
+ EFYGATE N +L N D+ GA G +L +F++P+ +++ + + IR P G+C
Sbjct: 379 QVAEFYGATECNCSLGNFDSQVGACGFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GIC 436
Query: 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
I C+ +PG ++G I Q DP R F GY ++ + KKI ++VFK GD+ +L+GD++VMDEL
Sbjct: 437 IPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDVFKKGDQAYLTGDVLVMDEL 496
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT 957
GYLYF+DRTGDT+RWKGENVST EVE T+S+ L + VYGV+V +GRAGM A+
Sbjct: 497 GYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLDMADVAVYGVEVPGTEGRAGMAAVASP 556
Query: 958 SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY 1017
+ DL+ Q L+ LP YARP+F+RI+ + TGT+K++K +L+ EGFDP+ + D L+
Sbjct: 557 TGNCDLERFAQDLEKELPLYARPIFLRILPELHKTGTYKLQKTELRKEGFDPAIVKDPLF 616
Query: 1018 ---VRQGSEFVRMTPNTYEKI 1035
R+G +V + Y +I
Sbjct: 617 YLDARKG-RYVPLDQEAYSRI 636
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Macaca fascicularis (taxid: 9541) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q60714|S27A1_MOUSE Long-chain fatty acid transport protein 1 OS=Mus musculus GN=Slc27a1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/536 (42%), Positives = 335/536 (62%), Gaps = 12/536 (2%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + + GF GDV+A+ E RPE+VG+WLG AK GV++AL+N NL+++P
Sbjct: 107 AQLDTYSNAVANLFRQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL------DETKPDLPNLSDLMKT 622
L + T +KA+I + + E + L + PD L ++
Sbjct: 167 LAFCLGTSAAKALIYGGEMAAAVAEVSEQLGKSLLKFCSGDLGPESILPDTQLLDPMLAE 226
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + + + D L YIYTSGTTGLPKAAI+ + + G H S+ + DV+Y
Sbjct: 227 APTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRAADVLY 286
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G +I G ++ +R KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 287 DCLPLYHSAGNIMGVGQCVIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLR 346
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
+ + H+V +G G+R IW +F +RF V I EFYGATE N ++ NMD G+
Sbjct: 347 QPVRDVEQRHRVRLAVGNGLRPAIWEEFTQRFGVPQIGEFYGATECNCSIANMDGKVGSC 406
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L T ++P+ +++ + +P+RD + GLCI C+ +PG+++G+I Q DP R F
Sbjct: 407 GFNSRIL-THVYPIRLVKVNEDTMEPLRDSE-GLCIPCQPGEPGLLVGQINQQDPLRRFD 464
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY + KKI +VF+ GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST EV
Sbjct: 465 GYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEV 524
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
EA +S+ L T+ VYGV V ++G+AGM AI D +Q+D + Q L L +YARP+F
Sbjct: 525 EAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPHSQLDPNSMYQELQKVLASYARPIF 584
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
+R++ ++ TGTFKI+K +LQ EGFDP Q SD L+ ++QG +V + + +I
Sbjct: 585 LRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQG-RYVPLDERVHARI 639
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FatP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q6P1M0|S27A4_HUMAN Long-chain fatty acid transport protein 4 OS=Homo sapiens GN=SLC27A4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/560 (42%), Positives = 341/560 (60%), Gaps = 18/560 (3%)
Query: 490 ASNARSTNDAAATTVKNLEA-----QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 544
AS R D A + + Q+DEYS+ +A LQ G GDV A+ ENR E+V
Sbjct: 81 ASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNEFV 140
Query: 545 GVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKL 603
G+WLG AKLGV +ALINTNL++ L+H ++T +++A++ + I + S+ P + L
Sbjct: 141 GLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAICEVHASLDPSLSL 200
Query: 604 FLLDE-----TKPDLPNLSDLMKTTPASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIM 657
F P +L L+K P PS P + +D L YIYTSGTTGLPKAAI+
Sbjct: 201 FCSGSWEPGAVPPSTEHLDPLLKDAPKH--LPSCPDKGFTDKLFYIYTSGTTGLPKAAIV 258
Query: 658 PNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717
+ + + + + D++Y+CLP+YHSAG ++G L+ G ++ IR KFSAS
Sbjct: 259 VHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASR 318
Query: 718 YFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ 777
++ DC KY C YIGE+CRYLL EA+ HQV +G G+R IW F RFH+
Sbjct: 319 FWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIP 378
Query: 778 TIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
+ EFYGATE N +L N D+ GA G +L +F++P+ +++ + + IR P G+C
Sbjct: 379 QVAEFYGATECNCSLGNFDSQVGACGFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GVC 436
Query: 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
I C+ +PG ++G I Q DP R F GY ++ + KKI ++VFK GD+ +L+GD++VMDEL
Sbjct: 437 IPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDVFKKGDQAYLTGDVLVMDEL 496
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT 957
GYLYF+DRTGDT+RWKGENVST EVE T+S+ L + VYGV+V +GRAGM A+
Sbjct: 497 GYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLDMADVAVYGVEVPGTEGRAGMAAVASP 556
Query: 958 SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY 1017
+ DL+ Q L+ LP YARP+F+R++ + TGT+K +K +L+ EGFDP+ + D L+
Sbjct: 557 TGNCDLERFAQVLEKELPLYARPIFLRLLPELHKTGTYKFQKTELRKEGFDPAIVKDPLF 616
Query: 1018 V--RQGSEFVRMTPNTYEKI 1035
Q +V + Y +I
Sbjct: 617 YLDAQKGRYVPLDQEAYSRI 636
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P97849|S27A1_RAT Long-chain fatty acid transport protein 1 OS=Rattus norvegicus GN=Slc27a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/515 (43%), Positives = 324/515 (62%), Gaps = 8/515 (1%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + GF GDV+A+ E RPE+VG+WLG AK GV++AL+N NL+++P
Sbjct: 107 AQLDTYSNAVANLFLQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL------DETKPDLPNLSDLMKT 622
L + T +KA+I + + E + L + PD L ++
Sbjct: 167 LAFCLGTSAAKALIYGGEMAAAVAEVSEQLGKSLLKFCSGDLGPESVLPDTQLLDPMLAE 226
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + + + D L YIYTSGTTGLPKAAI+ + + G H S+ + DV+Y
Sbjct: 227 APTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRANDVLY 286
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G +I G ++ +R KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 287 DCLPLYHSAGNIMGVGQCIIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLR 346
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
+ + H+V +G G+R IW +F + F V+ I EFYGATE N ++ NMD G+
Sbjct: 347 QPVRDVERRHRVRLAVGNGLRPAIWEEFTQGFGVRQIGEFYGATECNCSIANMDGKVGSC 406
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L T ++P+ +++ + +P+RD + GLCI C+ +PG+++G+I Q DP R F
Sbjct: 407 GFNSRIL-THVYPIRLVKVNEDTMEPLRDSQ-GLCIPCQPGEPGLLVGQINQQDPLRRFD 464
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY + KKI +VF+ GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST EV
Sbjct: 465 GYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEV 524
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
EA +S+ L T+ VYGV V ++G++GM AI D NQ+D + Q L L +YA+P+F
Sbjct: 525 EAVLSRLLGQTDVAVYGVAVPGVEGKSGMAAIADPHNQLDPNSMYQELQKVLASYAQPIF 584
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY 1017
+R++ ++ TGTFKI+K +LQ EGFDP Q SD L+
Sbjct: 585 LRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLF 619
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of Fatp1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q91VE0|S27A4_MOUSE Long-chain fatty acid transport protein 4 OS=Mus musculus GN=Slc27a4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/536 (44%), Positives = 335/536 (62%), Gaps = 15/536 (2%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+DEYS+ +A LQ G G+V+AL ENR E+VG+WLG AKLGV +ALINTNL++ L
Sbjct: 106 QLDEYSSSVANFLQARGLASGNVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPD-LP----NLSDLMKTT 623
H + T K++A+I + I I S+ P + LF +P +P +L L++
Sbjct: 166 RHCLDTSKARALIFGSEMASAICEIHASLEPTLSLFCSGSWEPSTVPVSTEHLDPLLEDA 225
Query: 624 PASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P PS P + +D L YIYTSGTTGLPKAAI+ + + + + + D++Y
Sbjct: 226 PKH--LPSHPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMASLVYYGFRMRPDDIVY 283
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G L+ G ++ IR KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 284 DCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLN 343
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
EA+ H+V +G G+R IW F RFH+ + EFYGATE N +L N D+ GA
Sbjct: 344 QPPREAESRHKVRMALGNGLRQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSRVGAC 403
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L +F++P+ +++ + + IR P G+CI C+ QPG ++G I Q DP R F
Sbjct: 404 GFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GVCIPCQPGQPGQLVGRIIQQDPLRRFD 461
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY ++ + KKI +VFK GD+ +L+GD++VMDELGYLYF+DRTGDT+RWKGENVST EV
Sbjct: 462 GYLNQGANNKKIANDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEV 521
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E T+S+ L + VYGV+V +GRAGM A+ + DL+ Q L LP YARP+F
Sbjct: 522 EGTLSRLLHMADVAVYGVEVPGTEGRAGMAAVASPISNCDLESFAQTLKKELPLYARPIF 581
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
+R + + TGTFK +K +L+ EGFDPS + D L+ R+G +V + Y +I
Sbjct: 582 LRFLPELHKTGTFKFQKTELRKEGFDPSVVKDPLFYLDARKGC-YVALDQEAYTRI 636
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RDY4|S27A4_PONAB Long-chain fatty acid transport protein 4 OS=Pongo abelii GN=SLC27A4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/561 (42%), Positives = 345/561 (61%), Gaps = 20/561 (3%)
Query: 490 ASNARSTNDAAATTVKNLEA-----QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 544
AS R D A + + Q+DEYS+ +A LQ G GDV A+ ENR E+V
Sbjct: 81 ASTVRRHPDKTALIFEGTDTLWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNEFV 140
Query: 545 GVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKL 603
G+WLG AKLGV +ALINTNL++ +H ++T +++A++ + I I S+ P + L
Sbjct: 141 GLWLGMAKLGVEAALINTNLRRDAQLHCLTTSRARALVFGSEMASAICEIHASLDPSLSL 200
Query: 604 FLLDETKPD-LP----NLSDLMKTTPAS-EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM 657
F +P+ +P +L L+K P + P + +D L YIYTSGTTGLPKAAI+
Sbjct: 201 FCSGSWEPNAVPTSTEHLDPLLKDAPKHLPICPDKGF--TDKLFYIYTSGTTGLPKAAIV 258
Query: 658 PNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717
+ + + + + D++Y+CLP+YHSAG ++G L+ G ++ IR KFSAS
Sbjct: 259 VHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASR 318
Query: 718 YFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ 777
++ DC KY C YIGE+CRYLL EA+ HQV +G G+R IW F RFH+
Sbjct: 319 FWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIP 378
Query: 778 TIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
+ EFYGATE N +L N D+ GA G +L +F++P+ +++ + + IR P G+C
Sbjct: 379 QVAEFYGATECNCSLGNFDSQVGACGFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GIC 436
Query: 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
I C+ +PG ++G I Q DP R F GY ++ + KKI ++VFK GD+ +L+GD++VMDEL
Sbjct: 437 IPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANDKKIAKDVFKKGDQAYLTGDVLVMDEL 496
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT 957
GYLYF+DRTGDT+RWKGENVST EVE T+S+ L + VYGV+V +GRAGM A+
Sbjct: 497 GYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLDMADVAVYGVEVPGTEGRAGMAAVASP 556
Query: 958 SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY 1017
+ DL+ Q L+ LP YARP+F+R++ + TGT+K +K +L+ EGFDP+ + D L+
Sbjct: 557 TGNCDLERFAQVLEKELPLYARPIFLRLLPELHKTGTYKFQKTELRKEGFDPAIVKDPLF 616
Query: 1018 ---VRQGSEFVRMTPNTYEKI 1035
R+G +V + Y +I
Sbjct: 617 YLDARKG-RYVPLDQEAYSRI 636
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q6PCB7|S27A1_HUMAN Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/541 (42%), Positives = 341/541 (63%), Gaps = 18/541 (3%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + + GF GDV+A+ E RPE+VG+WLG AK G+ +AL+N NL+++P
Sbjct: 107 AQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETKPD--LPN---LSDLMK- 621
L + T +KA+I + + + + F + P+ LP+ L L+K
Sbjct: 167 LAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKE 226
Query: 622 --TTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD 679
T P +++ PS+ + D L YIYTSGTTGLPKAAI+ + + G H + + D
Sbjct: 227 ASTAPLAQI-PSKGMD--DRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAAD 283
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
V+Y+CLP+YHSAG +IG LI G ++ +R KFSAS ++ DC KY C YIGE+CRY
Sbjct: 284 VLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRY 343
Query: 740 LLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE 799
LL EA+ H+V +G G+R IW +F +RF V+ I EFYGATE N ++ NMD
Sbjct: 344 LLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKV 403
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
G+ G +LP ++P+ +++ + + +RD + GLCI C+ +PG+++G+I Q DP R
Sbjct: 404 GSCGFNSRILP-HVYPIRLVKVNEDTMELLRDAQ-GLCIPCQAGEPGLLVGQINQQDPLR 461
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY + + KKI +VF GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST
Sbjct: 462 RFDGYVSESATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVST 521
Query: 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYAR 979
EVE +S+ L T+ VYGV V ++G+AGM A+ D + +D + Q L L YAR
Sbjct: 522 TEVEGVLSRLLGQTDVAVYGVAVPGVEGKAGMAAVADPHSLLDPNAIYQELQKVLAPYAR 581
Query: 980 PLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKIM 1036
P+F+R++ ++ TGTFKI+K +LQ EGFDP Q SD L+ ++QG ++ + Y +I
Sbjct: 582 PIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQG-HYLPLNEAVYTRIC 640
Query: 1037 N 1037
+
Sbjct: 641 S 641
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q3ZKN0|S27A1_BOVIN Long-chain fatty acid transport protein 1 OS=Bos taurus GN=SLC27A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/538 (42%), Positives = 335/538 (62%), Gaps = 12/538 (2%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + + GF GDV+A+ E RPE+VG+WLG AK GV +AL+N NL+++P
Sbjct: 107 AQLDAYSNAVANLFRRLGFAPGDVVAIFMEGRPEFVGLWLGLAKAGVEAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSA-LYYPEIEAIRESIPDVKLFLLDETKPD--LPN---LSDLMKT 622
L + T +KA++ L E E + F + PD P+ L L+K
Sbjct: 167 LAFCLGTSGAKALVFGGELAAAVAEMSGELGKSLVKFCSGDVGPDGVFPDTQLLDPLLKE 226
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
T + + D L YIYTSGTTGLPKAAI+ + + G + S+ + DV+Y
Sbjct: 227 TSTAPLAQPPGKGMDDRLFYIYTSGTTGLPKAAIIVHSRYYRIAAFGHYSYSMQAADVLY 286
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G LI G ++ +R KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 287 DCLPLYHSAGNIMGVGQCLIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLK 346
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
EA+ H+V +G G+R IW +F +RF V+ I EFYGATE N ++ NMD G+
Sbjct: 347 QPVREAEGRHRVRLAVGNGLRPSIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSR 406
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +LP ++P+ +++ + + +RD + GLCI C+ +PG+++G+I Q DP R F
Sbjct: 407 GFNSRILP-HVYPIRLVKVNEDTMELLRDAQ-GLCIPCQTGEPGLLVGQINQQDPLRRFD 464
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY + + KKI +VF+ GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST EV
Sbjct: 465 GYISESATSKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEV 524
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E +S+ L T+ VYGV V ++G+A M AI D ++ L + L L YARP+F
Sbjct: 525 EGVLSRLLGQTDVAVYGVAVPGVEGKACMAAIADPHGRLSPNALYEELQKVLAPYARPIF 584
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKIMN 1037
+R++ ++ TGTFKI+K +LQ+EGFDP Q SD L+ ++QG ++ + Y +I +
Sbjct: 585 LRLLPQVDTTGTFKIQKTRLQHEGFDPRQTSDRLFFLDLKQG-HYLPLDQGVYTRICS 641
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O14975|S27A2_HUMAN Very long-chain acyl-CoA synthetase OS=Homo sapiens GN=SLC27A2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 225/544 (41%), Positives = 321/544 (59%), Gaps = 29/544 (5%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
AQ+D SN++AR L D G ++GD +AL+ N P YV +WLG KLG A +N N++ +
Sbjct: 82 AQVDRRSNQVARALHDHLGLRQGDCVALLMGNEPAYVWLWLGLVKLGCAMACLNYNIRAK 141
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEA-IRESIP-----DVKLFLLDETK-----PDLPNL 616
L+H +K ++VS PE++A + E +P DV ++ + T +
Sbjct: 142 SLLHCFQCCGAKVLLVS----PELQAAVEEILPSLKKDDVSIYYVSRTSNTDGIDSFLDK 197
Query: 617 SDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-L 675
D + T P E SE + S LYIYTSGTTGLPKAA++ + ++ G G +S L
Sbjct: 198 VDEVSTEPIPESWRSE-VTFSTPALYIYTSGTTGLPKAAMITHQRIWYG--TGLTFVSGL 254
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
+ DVIY LP YHSA LIG ++ G+++A+RTKFSAS ++ DC KY YIGE
Sbjct: 255 KADDVIYITLPFYHSAALLIGIHGCIVAGATLALRTKFSASQFWDDCRKYNVTVIQYIGE 314
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
+ RYL S + D H+V +G G+RGD+W +FVKRF I EFY ATEGN +N
Sbjct: 315 LLRYLCNSPQKPNDRDHKVRLALGNGLRGDVWRQFVKRFGDICIYEFYAATEGNIGFMNY 374
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855
GAVG + L + +I++D+ +++P+RD + G C+R + G+++ +I Q
Sbjct: 375 ARKVGAVGRVNYLQKKII-TYDLIKYDVEKDEPVRD-ENGYCVRVPKGEVGLLVCKITQL 432
Query: 856 DPSRHFYGYAD-KKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
P F GYA K +++KK L +VFK GD YF SGD++++D ++YF DR GDT+RWKG
Sbjct: 433 TP---FNGYAGAKAQTEKKKLRDVFKKGDLYFNSGDLLMVDHENFIYFHDRVGDTFRWKG 489
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI-VDTSNQVDLKLLVQGLDAN 973
ENV+T EV T+ E VYGV V D +GR GM +I + +++ D K L Q +
Sbjct: 490 ENVATTEVADTVGLVDFVQEVNVYGVHVPDHEGRIGMASIKMKENHEFDGKKLFQHIADY 549
Query: 974 LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSE--FVRMTPNT 1031
LP+YARP F+RI IE+TGTFK +K+ L EGF+P+ I D LY + +V MT +
Sbjct: 550 LPSYARPRFLRIQDTIEITGTFKHRKMTLVEEGFNPAVIKDALYFLDDTAKMYVPMTEDI 609
Query: 1032 YEKI 1035
Y I
Sbjct: 610 YNAI 613
|
Acyl-CoA synthetase probably involved in bile acid metabolism. Proposed to activate C27 precurors of bile acids to their CoA thioesters derivatives before side chain cleavage via peroxisomal beta-oxidation occurs. In vitro, activates 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate (THCA), the C27 precursor of cholic acid deriving from the de novo synthesis from cholesterol. Does not utilize C24 bile acids as substrates. In vitro, also activates long- and branched-chain fatty acids and may have additional roles in fatty acid metabolism. May be involved in translocation of long-chain fatty acids (LFCA) across membranes. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O35488|S27A2_MOUSE Very long-chain acyl-CoA synthetase OS=Mus musculus GN=Slc27a2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/549 (39%), Positives = 320/549 (58%), Gaps = 35/549 (6%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
AQ+D SN++AR L D G ++GD +AL N P YV +WLG KLG A +N N++ +
Sbjct: 82 AQVDRRSNQVARALHDQLGLRQGDCVALFMGNEPAYVWIWLGLLKLGCPMACLNYNIRAK 141
Query: 568 PLVHSISTVKSKAIIVSALYYPEI-EAIRESIPDVK-----LFLLDETK-----PDLPNL 616
L+H +K ++ S P++ EA+ E +P +K +F + T + +
Sbjct: 142 SLLHCFQCCGAKVLLAS----PDLQEAVEEVLPTLKKDAVSVFYVSRTSNTNGVDTILDK 197
Query: 617 SDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG 676
D + P E SE T+ ++ YIYTSGTTGLPKAA + + ++ G L++
Sbjct: 198 VDGVSAEPTPESWRSEVTFTTPAV-YIYTSGTTGLPKAATINHHRLWYGTG-----LAMS 251
Query: 677 SG----DVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIY 732
SG DVIY +P+YHSA +IG +++G+++A+R+KFSAS ++ DC KY Y
Sbjct: 252 SGITAQDVIYTTMPLYHSAALMIGLHGCIVVGATLALRSKFSASQFWDDCRKYNVTVIQY 311
Query: 733 IGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792
IGE+ RYL + + D H+V K +G G+RGD+W +F+KRF + EFY +TEGN
Sbjct: 312 IGELLRYLCNTPQKPNDRDHKVKKALGNGLRGDVWREFIKRFGDIHVYEFYASTEGNIGF 371
Query: 793 VNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852
VN GAVG L + +I++D+ +++P+RD G CI+ + G+++ +I
Sbjct: 372 VNYPRKIGAVG-RANYLQRKVARYELIKYDVEKDEPVRD-ANGYCIKVPKGEVGLLVCKI 429
Query: 853 KQSDPSRHFYGYA-DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
Q P F GYA K +++KK L +VFK GD YF SGD++++D ++YF DR GDT+R
Sbjct: 430 TQLTP---FIGYAGGKTQTEKKKLRDVFKKGDIYFNSGDLLMIDRENFVYFHDRVGDTFR 486
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI-VDTSNQVDLKLLVQGL 970
WKGENV+T EV + E VYGV V +GR GM ++ + + + + K L Q +
Sbjct: 487 WKGENVATTEVADIVGLVDFVEEVNVYGVPVPGHEGRIGMASLKIKENYEFNGKKLFQHI 546
Query: 971 DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSE--FVRMT 1028
LP+YARP F+RI IE+TGTFK +K+ L EGF+P+ I D LY +E FV MT
Sbjct: 547 AEYLPSYARPRFLRIQDTIEITGTFKHRKVTLMEEGFNPTVIKDTLYFMDDAEKTFVPMT 606
Query: 1029 PNTYEKIMN 1037
N Y I++
Sbjct: 607 ENIYNAIID 615
|
Acyl-CoA synthetase probably involved in bile acid metabolism. Proposed to activate C27 precurors of bile acids to their CoA thioesters derivatives before side chain cleavage via peroxisomal beta-oxidation occurs. In vitro, activates 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate (THCA), the C27 precursor of cholic acid deriving from the de novo synthesis from cholesterol. Does not utilize C24 bile acids as substrates. In vitro, also activates long- and branched-chain fatty acids and may have additional roles in fatty acid metabolism (By similarity). May be involved in translocation of long-chain fatty acids (LFCA) across membranes. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1102 | ||||||
| 345493603 | 649 | PREDICTED: long-chain fatty acid transpo | 0.477 | 0.810 | 0.509 | 1e-154 | |
| 380012084 | 648 | PREDICTED: LOW QUALITY PROTEIN: long-cha | 0.480 | 0.816 | 0.495 | 1e-145 | |
| 328782992 | 648 | PREDICTED: long-chain fatty acid transpo | 0.480 | 0.816 | 0.491 | 1e-145 | |
| 340722519 | 649 | PREDICTED: long-chain fatty acid transpo | 0.478 | 0.812 | 0.494 | 1e-145 | |
| 350418493 | 649 | PREDICTED: long-chain fatty acid transpo | 0.474 | 0.805 | 0.494 | 1e-144 | |
| 170041869 | 627 | long-chain fatty acid transport protein | 0.472 | 0.830 | 0.489 | 1e-144 | |
| 91082889 | 695 | PREDICTED: similar to AMP dependent liga | 0.529 | 0.838 | 0.458 | 1e-143 | |
| 383858393 | 603 | PREDICTED: long-chain fatty acid transpo | 0.478 | 0.873 | 0.481 | 1e-143 | |
| 357613876 | 742 | hypothetical protein KGM_13632 [Danaus p | 0.476 | 0.707 | 0.494 | 1e-143 | |
| 194761936 | 626 | GF14087 [Drosophila ananassae] gi|190616 | 0.477 | 0.840 | 0.472 | 1e-142 |
| >gi|345493603|ref|XP_003427107.1| PREDICTED: long-chain fatty acid transport protein 4-like isoform 2 [Nasonia vitripennis] gi|345493605|ref|XP_001603871.2| PREDICTED: long-chain fatty acid transport protein 4-like isoform 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/536 (50%), Positives = 371/536 (69%), Gaps = 10/536 (1%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A ID+YSN+IA + ++ G+ KGD +AL+ N+PEY+ WLG KLGVI+ALINTNL+ Q
Sbjct: 112 ADIDKYSNRIAAVFKNAGYVKGDAVALIMPNKPEYIATWLGLGKLGVITALINTNLRMQS 171
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKP---DLPNLSDLMKTTPA 625
LVH ++ K KA+I + I+ + E +P+ + + P + NL +LM + A
Sbjct: 172 LVHCLAIAKVKAVIYADELESAIDDVIEQLPNFERYRQGSDAPCKDGVLNLEELM--SKA 229
Query: 626 SEVKP--SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSL-GSGDVIY 682
S+ +P E D+L+YIYTSGTTGLPKAA+ PN + LL H+L L D++Y
Sbjct: 230 SDEQPVVDEEPGYKDNLVYIYTSGTTGLPKAALFPNSRYLLVQTATHHMLGLRPKSDIVY 289
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
N +P+YH +GG++GT AL+ G +RTKFS + Y+ DC KY C YIGEMCRYLL+
Sbjct: 290 NPIPLYHMSGGIVGTGCALVKGIPSVLRTKFSVTAYWTDCIKYNCTISQYIGEMCRYLLS 349
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
+ D +H V M+G GMR IW FV RF ++ + E YG++EGNAN+VN+DNT GAV
Sbjct: 350 APPRPEDSTHPVRLMVGNGMRPQIWQNFVNRFKIEQVTEVYGSSEGNANIVNVDNTVGAV 409
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +P++LP LHPVA+I+ ++P+R P G CIR + N+PGM+IG IKQ + SR F
Sbjct: 410 GFVPSILPKSLHPVAVIRVHPETSEPVRGPD-GFCIRAETNEPGMLIGLIKQGNASREFN 468
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY DK+ S+KK +ENVF GDK FL+GD+MV DE GY YFKDRTGDT+RWKGENV+T EV
Sbjct: 469 GYLDKEASKKKTIENVFVKGDKAFLTGDIMVQDEYGYFYFKDRTGDTFRWKGENVATAEV 528
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E +S Y + TVYGV+V ++GRAGM AIVD + +D K L +GLD +LP+YARP+F
Sbjct: 529 EGVVSNVAGYRDTTVYGVQVPGMEGRAGMAAIVDPDSLLDFKALAEGLDKSLPSYARPIF 588
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMN 1037
+RI+K +E+T TFK+KKI LQ EGFDP++I D +Y R G+ E+V +TP YE+I++
Sbjct: 589 LRIVKELELTSTFKLKKINLQKEGFDPNKIQDKVYFRSGNKEYVEVTPELYEEIIS 644
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380012084|ref|XP_003690119.1| PREDICTED: LOW QUALITY PROTEIN: long-chain fatty acid transport protein 4-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1349), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/535 (49%), Positives = 365/535 (68%), Gaps = 6/535 (1%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +++YSN+IA + Q G+ KGD +ALM NRPE+V +WLG KLGVI+ALINTNL+ Q
Sbjct: 113 SDVNKYSNQIANVFQKAGYVKGDAVALMMSNRPEHVAIWLGLGKLGVITALINTNLRLQS 172
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLP--NLSDLMKTTPA 625
L+H + K K+II Y ++ I++SI VK + +++K + NL++L+
Sbjct: 173 LIHCLRIAKVKSIIYMEEYSSALDEIKDSIQGIVKYKICNKSKCEDGEYNLNELISEVGT 232
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
SE +P D L+YIYTSGTTGLPK AI+ N + LL K LL + D++YN
Sbjct: 233 SEPIVKDPPTYRDKLVYIYTSGTTGLPKVAIILNSRYLLTIMPFK-LLGMRQDDILYNPN 291
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE 745
P+YH+AGG+IG A++ G +RTKFS S Y+ DC KY C A YIGEMCRYLL++
Sbjct: 292 PLYHTAGGMIGAGFAIVKGVPNVLRTKFSVSAYWTDCIKYNCTAAQYIGEMCRYLLSAPP 351
Query: 746 SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGII 805
D +H++ M G GMR IW +FVKRF+++ + EFYG++E NAN+ N D GAVG +
Sbjct: 352 KPEDTAHRLRLMFGNGMRPQIWNEFVKRFNIKRVSEFYGSSEXNANISNFDGRIGAVGFV 411
Query: 806 PTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865
P ++P HP+AII+ + +P+RD GLCIR N+PGM IG IK+ D R F GY
Sbjct: 412 PLIVPRRFHPLAIIRVNNQTYEPVRD-SNGLCIRAGTNEPGMFIGLIKEGDALREFNGYL 470
Query: 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925
DK+ES+KKI+++VF GDK FL+GD++V DE GYLYFKDR GDTYRWKGENV+T EVE
Sbjct: 471 DKEESKKKIIQDVFAKGDKAFLTGDILVEDEFGYLYFKDRVGDTYRWKGENVATAEVEGV 530
Query: 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRI 985
IS TVYGV+V ++GRAGM AIVD + +D K L +GL+ LPAYARP+F+RI
Sbjct: 531 ISSIAGKRASTVYGVQVPGMEGRAGMAAIVDPDSLLDFKALAEGLEKALPAYARPIFLRI 590
Query: 986 MKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMNDQ 1039
+K +EMTGTFK++K+ LQ +GFDP+++ D +Y G+ E+V +TP Y++I++ +
Sbjct: 591 VKELEMTGTFKLQKMNLQKDGFDPNKVQDKMYFLAGNKEYVEITPELYQEIISGR 645
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328782992|ref|XP_392108.3| PREDICTED: long-chain fatty acid transport protein 4-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/535 (49%), Positives = 366/535 (68%), Gaps = 6/535 (1%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +++YSN+IA + Q G+ KGD +ALM NRPE+V +WLG KLGVI+ALINTNL+ Q
Sbjct: 113 SDVNKYSNQIANVFQKAGYVKGDAVALMMSNRPEHVAIWLGLGKLGVITALINTNLRLQS 172
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPDLP--NLSDLMKTTPA 625
L+H + K K+II Y ++ I++SI + K + +++K + +L++L+
Sbjct: 173 LIHCLRIAKVKSIIYMEEYSSALDEIKDSIQGIIKYKICNKSKCEDGEYDLNELISEAGT 232
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
SE +P D L+YIYTSGTTGLPK AI+ N + LL K LL + D++YN
Sbjct: 233 SEPIVKDPPTYRDKLVYIYTSGTTGLPKVAIILNSRYLLTIMPFK-LLGMRQDDILYNPN 291
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE 745
P+YH+AGG+IG A++ G +RTKFS S Y+ DC KY C A YIGEMCRYLL++
Sbjct: 292 PLYHTAGGMIGAGFAIVKGVPNVLRTKFSVSAYWTDCIKYNCTAAQYIGEMCRYLLSAPP 351
Query: 746 SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGII 805
D +H++ M G GMR IW +FVKRF+++ + EFYG++EGNAN+ N D GAVG +
Sbjct: 352 KPEDTAHRLRLMFGNGMRPQIWNEFVKRFNIKRVSEFYGSSEGNANISNFDGRIGAVGFV 411
Query: 806 PTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865
P ++P HP+AII+ + +P+RD GLCIR N+PGM IG IK+ + R F GY
Sbjct: 412 PLIVPRRFHPLAIIRVNNQTYEPVRD-SNGLCIRAGTNEPGMFIGLIKEGNALREFNGYL 470
Query: 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925
DK+ES+KKI+++VF GDK FL+GD++V DE GYLYFKDR GDTYRWKGENV+T EVE
Sbjct: 471 DKEESKKKIIQDVFVKGDKAFLTGDILVEDEFGYLYFKDRVGDTYRWKGENVATAEVEGV 530
Query: 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRI 985
IS TVYGV+V ++GRAGM AIVD + +D K L +GL+ LPAYARP+F+RI
Sbjct: 531 ISSIAGKRASTVYGVQVPGMEGRAGMAAIVDPDSLLDFKALAEGLEKALPAYARPIFLRI 590
Query: 986 MKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMNDQ 1039
+K +EMTGTFK++K+ LQ +GFDP+++ D +Y G+ E+V +TP Y++I++ +
Sbjct: 591 VKELEMTGTFKLQKMNLQKDGFDPNKVQDKMYFLAGNKEYVEITPELYQEIISGR 645
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722519|ref|XP_003399652.1| PREDICTED: long-chain fatty acid transport protein 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/534 (49%), Positives = 362/534 (67%), Gaps = 7/534 (1%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ I++YSN+IA I Q G+ KGD +ALM NRPEY +WLG KLGV++ALINTNL+ Q
Sbjct: 113 SDINKYSNQIAYIFQKAGYVKGDAVALMMPNRPEYAAIWLGLGKLGVVTALINTNLRLQS 172
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDV---KLFLLDET-KPDLPNLSDLMKTTP 624
L+H + + K+II Y ++ I +SI + K+ ET + + +L+ L+
Sbjct: 173 LIHCLRIAEVKSIIYVEEYSSAVDDIVDSIQGIVRYKVCFKSETCESGVCDLNKLISEAS 232
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
SE + D LLY YTSGTTGLPK AI+ N + LL + +L+ L SGD++YN
Sbjct: 233 TSEPVVKDEPNYRDKLLYFYTSGTTGLPKVAIVLNSRYLLV-VMPFNLVGLRSGDILYNP 291
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK 744
P+YH+AGG++G A++ G +RTKFS S Y+ DC KY C A Y+GEMCRYLL +
Sbjct: 292 NPLYHTAGGMLGVGFAILKGIPTVLRTKFSVSAYWTDCIKYNCTAAQYVGEMCRYLLNAP 351
Query: 745 ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804
D +H++ M G GMR IW +FVKRF+++ I EFYG++EGNAN+ N+D GAVG
Sbjct: 352 PKPEDNAHRLRLMFGNGMRPQIWGEFVKRFNIKRISEFYGSSEGNANIANLDGRTGAVGF 411
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+P ++P HPVAII+ + +P+R GLCIR + N+PGM IG IK D R F GY
Sbjct: 412 VPLIVPRVFHPVAIIRVNNQTYEPVRG-TNGLCIRAETNEPGMFIGLIKDGDALREFNGY 470
Query: 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
DK+ES++KI+++VF GDK FL+GD++V DE GY+YFKDR GDT+RWKGENV+T EVE
Sbjct: 471 LDKEESKRKIIQDVFVKGDKAFLTGDILVEDEYGYIYFKDRVGDTFRWKGENVATAEVEG 530
Query: 925 TISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVR 984
IS + TVYGV+V ++GRAGM AIVD + +D K L +GL+ LPAYARP+F+R
Sbjct: 531 VISNIAGKRDATVYGVQVPGMEGRAGMAAIVDPDSLLDFKALAEGLEKALPAYARPIFLR 590
Query: 985 IMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMN 1037
I+K +E+TGTFK+KK+ LQ EGFDPS+I D +Y G+ E+V +TP Y++I++
Sbjct: 591 IVKELEITGTFKLKKMDLQKEGFDPSKIQDKMYFLSGNKEYVEITPELYQEIIS 644
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418493|ref|XP_003491875.1| PREDICTED: long-chain fatty acid transport protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1340), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/538 (49%), Positives = 364/538 (67%), Gaps = 15/538 (2%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ I++YSN+IA I Q G+ KGD +ALM NRPEY +WLG KLGV++ALINTNL+ Q
Sbjct: 113 SDINKYSNQIAYIFQKAGYVKGDAVALMMPNRPEYAAIWLGLGKLGVVTALINTNLRLQS 172
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDV---KLFLLDETKPDLPNLSDLMKTTPA 625
L+H + + K+II Y ++ I +SI + K+ ET + + DL K
Sbjct: 173 LIHCLRIAEVKSIIYVEEYSSAVDDIMDSIQGIARYKVCFKSETCEN--GVYDLNKLI-- 228
Query: 626 SEVKPSEPL-----QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
SE +EP+ D LLY YTSGTTGLPK AI+ N + LL + +L+ L SGD+
Sbjct: 229 SEASTNEPVVKDEPNYRDKLLYFYTSGTTGLPKVAIVLNSRYLLV-VMPFNLVGLRSGDI 287
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL 740
+YN P+YH+AGG++G A++ G +RTKFS S Y+ DC KY C A Y+GEMCRYL
Sbjct: 288 LYNPNPLYHTAGGMLGVGFAILKGIPTVLRTKFSVSAYWTDCIKYNCTAAQYVGEMCRYL 347
Query: 741 LASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG 800
L + D +H++ M G GMR IW +FVKRF+++ I EFYG++EGNAN+ N+D G
Sbjct: 348 LNAPPKPEDNAHRLRLMFGNGMRPQIWGEFVKRFNIKRISEFYGSSEGNANIANLDGRTG 407
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
AVG +P ++P HP+AII+ + +P+R GLCIR + N+PGM IG IK+ D R
Sbjct: 408 AVGFVPLIVPRVFHPLAIIRVNNQTYEPVRG-TNGLCIRAETNEPGMFIGLIKEGDALRE 466
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY DK+ES++KI+++VF GDK FL+GD++V DE GY+YFKDR GDT+RWKGENV+T
Sbjct: 467 FNGYLDKEESKRKIIQDVFVKGDKAFLTGDILVEDECGYIYFKDRVGDTFRWKGENVATA 526
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARP 980
EVE IS + TVYGV+V ++GRAGM AIVD + +D K L +GL+ LPAYARP
Sbjct: 527 EVEGVISNIAGKRDATVYGVQVPGMEGRAGMAAIVDPDSLLDFKALAEGLEKALPAYARP 586
Query: 981 LFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMN 1037
+F+RI+K +E+TGTFK+KK+ LQ EGFDPS+I D +Y G+ E+V +TP Y++I++
Sbjct: 587 IFLRIVKELEITGTFKLKKMNLQKEGFDPSKIQDKMYFLSGNKEYVEITPELYQEIIS 644
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170041869|ref|XP_001848670.1| long-chain fatty acid transport protein 4 [Culex quinquefasciatus] gi|167865464|gb|EDS28847.1| long-chain fatty acid transport protein 4 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 263/537 (48%), Positives = 357/537 (66%), Gaps = 16/537 (2%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++ +YSN++A + G+K GDV+ L+ ENRPE+VG WLG +KLGVI LIN NL+K L
Sbjct: 89 EVSDYSNRVANVFHTHGYKHGDVVGLVMENRPEFVGTWLGLSKLGVIIPLINHNLRKNAL 148
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDET--KPDLPNLSDLM------ 620
+HSI+ K A++ S I I ES+P + L+ ++ + L N DL
Sbjct: 149 LHSITVAKCNALVYSEALCEAIGEITESLPSTMALYQFNDAIQQTVLANSKDLATLLQSA 208
Query: 621 -KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD 679
K P + VK + D LLYIYTSGTTGLPKAA++ + + L + D
Sbjct: 209 SKELPTTNVKKA---SHHDQLLYIYTSGTTGLPKAAVITHSRYLFITAAIHIVAGFSPND 265
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
V Y LP+YH+AGG++ ALI G+++AIR KFSAS YF DC KY C G YIGEMCRY
Sbjct: 266 VFYTPLPLYHTAGGMMSIGQALIFGATVAIRKKFSASQYFTDCQKYNCTVGQYIGEMCRY 325
Query: 740 LLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE 799
+LA+ ES D H+V + G G+R IW +FV+RF++ + EFYGATEGNAN+VN+DNT
Sbjct: 326 ILATPESGNDKDHKVRLIFGNGLRPQIWPQFVERFNIPRVAEFYGATEGNANIVNIDNTV 385
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
GA+G + ++P+ ++P++II+ D +PIR K GLC C+ N+PG+ IG+I ++PSR
Sbjct: 386 GAIGFVSRIIPS-VYPISIIRADPATGEPIRG-KDGLCQLCQPNEPGVFIGKILPNNPSR 443
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY DK S+KKI+ ++FK GD FLSGD++V DE G LYFKDRTGDT+RWKGENVST
Sbjct: 444 AFLGYVDKGASEKKIVRDIFKKGDSGFLSGDLLVADERGNLYFKDRTGDTFRWKGENVST 503
Query: 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYAR 979
EVEA +S Y + VYGV++ +L+GRAGM AI+D QVDL L L +LP+YAR
Sbjct: 504 SEVEAEVSNASGYRDTVVYGVEIPNLEGRAGMAAILDPEGQVDLVKLADTLKQSLPSYAR 563
Query: 980 PLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDL-YVRQGSEFVRMTPNTYEKI 1035
P+FVR++ ++MTGTFK+KK+ LQ EGFDP+ I D + Y+ + R+T YE+I
Sbjct: 564 PMFVRLLTKVDMTGTFKLKKLDLQKEGFDPNVIEDAVFYLSPKGAYERLTKEAYEQI 620
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91082889|ref|XP_971856.1| PREDICTED: similar to AMP dependent ligase [Tribolium castaneum] gi|270007071|gb|EFA03519.1| hypothetical protein TcasGA2_TC013521 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-143, Method: Compositional matrix adjust.
Identities = 275/600 (45%), Positives = 384/600 (64%), Gaps = 17/600 (2%)
Query: 450 YVIDEAALLDEEEMTEFVRQL-QSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLE 508
YV A D + + +++R L Q K Q E DVT + + N + + A ++ E
Sbjct: 97 YVALMTAPRDIKALYKYLRLLIQIKSWQRE-DVTLADIFRR--NVKRHPNKACILFEDQE 153
Query: 509 ---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565
AQ++EYSNK+A + + G+KKGDV+AL ENRPE++ +WLG +KLGVI+ LINTN +
Sbjct: 154 WSFAQLEEYSNKVANVFKSHGYKKGDVVALFLENRPEFIALWLGLSKLGVITPLINTNQR 213
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEI----EAIRESIPDVKLFLLDETKPD--LPNLSDL 619
LVHSI+ S+A+I + I E I + +L + D++ D +L L
Sbjct: 214 LDSLVHSITIAGSQAVIFGSDLSDAIIDVFEKIEAKVTFYQLCITDKSNVDQRFRDLRQL 273
Query: 620 MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD 679
+ P + SE L D L+YIYTSGTTGLPKAA++ + + + L S D
Sbjct: 274 INDAPPTPPSISEKLHHHDRLVYIYTSGTTGLPKAAVISSSRYIFIAAAIHWLSGFKSSD 333
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
Y LP+YH+AGG + LI G+++ IR KFSAS YF DC KYKC YIGEMCRY
Sbjct: 334 CFYTPLPLYHTAGGCMSVGQMLIYGATLVIRKKFSASAYFPDCEKYKCTIAQYIGEMCRY 393
Query: 740 LLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE 799
+LA +D H + + G G+R IW +FV+RF + + EFYGATEGNAN+VN+DNT
Sbjct: 394 ILAVPPKPSDTQHHLRMIYGNGLRPQIWCEFVERFKIPKVAEFYGATEGNANIVNVDNTV 453
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
GA+G + ++P+ ++P++II+ D +PIR+ GLC+ CK N+PG+ IG+I ++PSR
Sbjct: 454 GAIGFVSRIIPS-VYPISIIKVDPQTGEPIRNAH-GLCVPCKPNEPGVFIGKIIPNNPSR 511
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY D++ S+KK++ +VF GDK FLSGD++V DE GYL+FKDRTGDT+RWKGENVST
Sbjct: 512 AFLGYVDEEASKKKVVTDVFHRGDKAFLSGDILVADEFGYLFFKDRTGDTFRWKGENVST 571
Query: 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYAR 979
EVEA +S + Y + VYGV++ ++GRAGM AI D VDL L +G LP YAR
Sbjct: 572 SEVEAVLSNVISYKDVVVYGVEIRGVEGRAGMAAIFDPEGTVDLAQLAEGTKKALPFYAR 631
Query: 980 PLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDL-YVRQGSEFVRMTPNTYEKIMND 1038
P+F+RI+K ++MTGT+K+KK LQ EGFD S+ISDD+ Y+ + +TP Y++I ND
Sbjct: 632 PIFIRILKKLDMTGTYKLKKNDLQKEGFDVSKISDDIYYLDSKGTYSLVTPEVYQQI-ND 690
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858393|ref|XP_003704686.1| PREDICTED: long-chain fatty acid transport protein 4-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/534 (48%), Positives = 359/534 (67%), Gaps = 7/534 (1%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ I++YSN+IA + Q + KGD +ALM NRPEYV +WLG KLGV++ALINTNL++Q
Sbjct: 67 SDINKYSNQIAWVFQKANYVKGDAVALMMPNRPEYVAIWLGLGKLGVVTALINTNLRQQS 126
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK----LFLLDETKPDLPNLSDLMKTTP 624
L+H + K ++II Y + I++SI ++ F + + D+ +L+ L+
Sbjct: 127 LIHCLRIAKVRSIIYVEDYSSVLNDIKDSIQGIEKYKVCFKSETCENDVIDLNKLLSEAS 186
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
E + D LLYIYTSGTTGLPK AI+ N + LL ++ LL + S D++YN
Sbjct: 187 TEEPIVKDQPGYRDKLLYIYTSGTTGLPKVAIVLNSRYLLV-EMPFRLLGIKSNDILYNP 245
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK 744
P+YH+AGG+IG A++ G +R KFS S Y+ DC KY C YIGEMCRYLL +
Sbjct: 246 NPLYHTAGGMIGVGFAILKGIPNVLRAKFSVSAYWTDCIKYNCTTAQYIGEMCRYLLNAP 305
Query: 745 ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804
D +H++ M G GMR IW +FV RF+++ + EFYG++EGNAN+ N+D GA+G
Sbjct: 306 PKPQDRAHRLRLMFGNGMRPQIWDQFVTRFNIKRVAEFYGSSEGNANIANLDGKAGAIGF 365
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+P L+P HP+AII+ +PIR P GLCIR + N+PGM IG IK+ + R F GY
Sbjct: 366 VPLLIPRRFHPLAIIRVHSETYEPIRGP-NGLCIRAETNEPGMFIGLIKEGNALREFNGY 424
Query: 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
D++ S +KI+++VF GDK FL+GD++V DE GY+YFKDR GDT++WKGENV+T EVE
Sbjct: 425 LDQEASNRKIIQDVFVKGDKAFLTGDILVEDEYGYIYFKDRVGDTFKWKGENVATAEVEG 484
Query: 925 TISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVR 984
IS + + TVYGV+V ++GRAGM AIVD + +D K L +GL+ LPAYARP+F+R
Sbjct: 485 VISNIVGQRDATVYGVQVPGMEGRAGMAAIVDPDSLLDFKALAEGLEKALPAYARPIFLR 544
Query: 985 IMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMN 1037
I+K +EMTGTFK+KK+ LQ EGFDPS+I D +Y G+ E+V +TP Y++I++
Sbjct: 545 IVKELEMTGTFKLKKVNLQKEGFDPSKIQDKMYFLSGNKEYVEITPELYQEIIS 598
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357613876|gb|EHJ68761.1| hypothetical protein KGM_13632 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/534 (49%), Positives = 359/534 (67%), Gaps = 9/534 (1%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+I E SN+++R++Q+ G K+GDV+ + N EYV WLG AKLG +SALIN+NL+ +P
Sbjct: 211 EIAENSNQVSRVMQEHLGLKRGDVVCVFMPNCVEYVYTWLGMAKLGAVSALINSNLRHRP 270
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLF-LLDETKPDLPNL-SDLMKTTPA 625
L+H I K+KAI+ S I + + +P ++KLF L + P + +L +++ K P
Sbjct: 271 LLHCIQVAKAKAIVFSDSLAGAISELGDQLPPELKLFQLYGKCPPGVIDLRAEMDKQVPE 330
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
+ +P + D+LLYIYTSGTTG+PKAA++PN K LL H+L L S D +YN L
Sbjct: 331 YPIVTDKP-RYRDTLLYIYTSGTTGMPKAAVLPNSKYLLIVVATVHMLGLRSSDRLYNPL 389
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE 745
P+YH AGGL+GT AL+ G +R+KFSA++Y+ DC KY C YIGEMCRYLL +
Sbjct: 390 PLYHLAGGLVGTCAALVDGIPTVLRSKFSATHYWTDCIKYDCTVSQYIGEMCRYLLCAPS 449
Query: 746 SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGII 805
D H+V M+G GMR IW + V RF V I E YGATEGNAN++N+DNT GAVG +
Sbjct: 450 RPTDTQHRVRIMVGNGMRPAIWQQIVDRFKVPQINEIYGATEGNANIINVDNTVGAVGFL 509
Query: 806 PTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865
P L+PT+LHP+A+++ D + IR P GLCIRC+ N+PGM IG I Q + SR +YGY
Sbjct: 510 PKLVPTWLHPIALVRAD-DDGDLIRGPD-GLCIRCQPNEPGMFIGLIAQGNASREYYGYV 567
Query: 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925
+K +S KK++ +VF GD F+SGD++V DELGYLYF+DRTGDTY+WKGENV+T EVE
Sbjct: 568 EKSDSNKKLVRDVFCKGDAAFVSGDILVADELGYLYFRDRTGDTYKWKGENVATAEVEDA 627
Query: 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRI 985
+ + + VYGV + +GRAGM A+ ++ VD + L LD LP+YARPLF+R+
Sbjct: 628 VRAAIGQRDVVVYGVSIPQTEGRAGMAAV--SAASVDGRSLAVALDHALPSYARPLFLRL 685
Query: 986 MKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQ 1039
MK IE+T TFK+KK Q Q EGFDP I D L+ R G +FV +T ++ I N +
Sbjct: 686 MKDIEITSTFKLKKRQYQKEGFDPDVIQDPLFFRSGDDFVPLTSQLFDDICNGR 739
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194761936|ref|XP_001963147.1| GF14087 [Drosophila ananassae] gi|190616844|gb|EDV32368.1| GF14087 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/542 (47%), Positives = 361/542 (66%), Gaps = 16/542 (2%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q++E++NK+A +LQ G+KKGDV+AL+ ENR EYV WLG +K+GVI+ LINTNL+ L
Sbjct: 86 QVNEHANKVANVLQAQGYKKGDVVALLLENRAEYVATWLGLSKIGVITPLINTNLRGPSL 145
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLL---------DETKPDLPNLSDL 619
+HSI+ A+I + + + + +P ++ LF D+ P NL+ L
Sbjct: 146 LHSITVAHCSALIYGEDFIEAVSEVAKDLPAELTLFQYNNENNNSQADKDIPKAKNLNTL 205
Query: 620 MKTTPASEVKPSEP-LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSG 678
+ T AS+ KP++ + D L+YIYTSGTTGLPKAA++ + + L + +
Sbjct: 206 LAT--ASKEKPNKTEVNHHDKLVYIYTSGTTGLPKAAVISHSRYLFIAAGIHYTMGFQDE 263
Query: 679 DVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCR 738
DV Y LP+YH+AGG++ +++ GS+++IR KFSASNYF DCAKY G YIGEM R
Sbjct: 264 DVFYTPLPLYHTAGGIMCMGQSVLFGSTVSIRKKFSASNYFADCAKYNATIGQYIGEMAR 323
Query: 739 YLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT 798
Y+LA+K SE D H+V + G G+R IW +FV+RF++ + EFYGATEGNAN++N DNT
Sbjct: 324 YILATKPSEYDRKHRVRLVFGNGLRPQIWPQFVERFNIAKVGEFYGATEGNANIMNHDNT 383
Query: 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
GA+G + +LP ++P++II+ D +PIR+ K GLC C N+PG+ IG+I + +PS
Sbjct: 384 VGAIGFVSRILPK-IYPISIIRADPDSGEPIRN-KDGLCQLCAPNEPGVFIGKIVKGNPS 441
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
R F GY D K S KKI+++VFK GD FLSGD++V DE GYLYFKDRTGDT+RWKGENVS
Sbjct: 442 REFLGYVDAKASAKKIVKDVFKHGDMAFLSGDLLVADEKGYLYFKDRTGDTFRWKGENVS 501
Query: 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYA 978
T EVEA +S Y + VYGV + +GRAGM AI D ++DL + L LPAYA
Sbjct: 502 TSEVEAQVSNVAGYKDTVVYGVTIPHTEGRAGMAAIYDPQGELDLDVFAGNLAKVLPAYA 561
Query: 979 RPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQG-SEFVRMTPNTYEKIMN 1037
RP F+R++ +++TGTFK++K+ LQ EG+DPS I D LY + + +TP Y+++
Sbjct: 562 RPQFIRLLTKVDLTGTFKLRKVDLQKEGYDPSAIKDALYYQTAKGRYELLTPQVYDQVQR 621
Query: 1038 DQ 1039
++
Sbjct: 622 NE 623
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1102 | ||||||
| FB|FBgn0021953 | 705 | Fatp "Fatty acid (long chain) | 0.479 | 0.748 | 0.464 | 1.1e-155 | |
| ZFIN|ZDB-GENE-050417-248 | 643 | slc27a4 "solute carrier family | 0.475 | 0.814 | 0.437 | 2.6e-143 | |
| UNIPROTKB|Q0VCQ2 | 643 | SLC27A4 "Solute carrier family | 0.476 | 0.816 | 0.444 | 1.2e-140 | |
| UNIPROTKB|Q6P1M0 | 643 | SLC27A4 "Long-chain fatty acid | 0.473 | 0.811 | 0.437 | 1.7e-137 | |
| MGI|MGI:1347347 | 643 | Slc27a4 "solute carrier family | 0.472 | 0.810 | 0.445 | 2.5e-136 | |
| MGI|MGI:1347098 | 646 | Slc27a1 "solute carrier family | 0.475 | 0.811 | 0.430 | 6.6e-136 | |
| UNIPROTKB|G3V7V3 | 643 | Slc27a4 "Solute carrier family | 0.469 | 0.804 | 0.446 | 5.9e-135 | |
| UNIPROTKB|F1PAM6 | 642 | SLC27A4 "Uncharacterized prote | 0.471 | 0.809 | 0.432 | 1.2e-134 | |
| RGD|620927 | 646 | Slc27a1 "solute carrier family | 0.463 | 0.791 | 0.434 | 4.1e-134 | |
| UNIPROTKB|Q6PCB7 | 646 | SLC27A1 "Long-chain fatty acid | 0.472 | 0.806 | 0.430 | 1.4e-133 |
| FB|FBgn0021953 Fatp "Fatty acid (long chain) transport protein" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1293 (460.2 bits), Expect = 1.1e-155, Sum P(2) = 1.1e-155
Identities = 251/540 (46%), Positives = 361/540 (66%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q++E++NK+A +LQ G+KKGDV+AL+ ENR EYV WLG +K+GVI+ LINTNL+ L
Sbjct: 165 QVNEHANKVANVLQAQGYKKGDVVALLLENRAEYVATWLGLSKIGVITPLINTNLRGPSL 224
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLD------ETKPDLPNLSDLMKT 622
+HSI+ A+I + + + + +P ++ LF + ET+ ++P +L
Sbjct: 225 LHSITVAHCSALIYGEDFLEAVTDVAKDLPANLTLFQFNNENNNSETEKNIPQAKNLNAL 284
Query: 623 -TPASEVKPSEP-LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
T AS KP++ + D L+YIYTSGTTGLPKAA++ + + L + + D+
Sbjct: 285 LTTASYEKPNKTQVNHHDKLVYIYTSGTTGLPKAAVISHSRYLFIAAGIHYTMGFQEEDI 344
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL 740
Y LP+YH+AGG++ +++ GS+++IR KFSASNYF DCAKY G YIGEM RY+
Sbjct: 345 FYTPLPLYHTAGGIMCMGQSVLFGSTVSIRKKFSASNYFADCAKYNATIGQYIGEMARYI 404
Query: 741 LASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG 800
LA+K SE D H+V + G G+R IW +FV+RF++ + EFYGATEGNAN++N DNT G
Sbjct: 405 LATKPSEYDQKHRVRLVFGNGLRPQIWPQFVQRFNIAKVGEFYGATEGNANIMNHDNTVG 464
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
A+G + +LP ++P++II+ D +PIRD + GLC C N+PG+ IG+I + +PSR
Sbjct: 465 AIGFVSRILPK-IYPISIIRADPDTGEPIRD-RNGLCQLCAPNEPGVFIGKIVKGNPSRE 522
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY D+K S KKI+++VFK GD F+SGD++V DE GYLYFKDRTGDT+RWKGENVST
Sbjct: 523 FLGYVDEKASAKKIVKDVFKHGDMAFISGDLLVADEKGYLYFKDRTGDTFRWKGENVSTS 582
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARP 980
EVEA +S Y + VYGV + +GRAGM AI D ++DL + L LPAYARP
Sbjct: 583 EVEAQVSNVAGYKDTVVYGVTIPHTEGRAGMAAIYDPERELDLDVFAASLAKVLPAYARP 642
Query: 981 LFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGS-EFVRMTPNTYEKIMNDQ 1039
+R++ +++TGTFK++K+ LQ EG+DP+ I D LY + + +TP Y+++ ++
Sbjct: 643 QIIRLLTKVDLTGTFKLRKVDLQKEGYDPNAIKDALYYQTSKGRYELLTPQVYDQVQRNE 702
|
|
| ZFIN|ZDB-GENE-050417-248 slc27a4 "solute carrier family 27 (fatty acid transporter), member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.6e-143, Sum P(2) = 2.6e-143
Identities = 235/537 (43%), Positives = 344/537 (64%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++DEYSN++A L GF++GDV+AL ENR +YVG+WLG AK+GV +ALIN NL+ + L
Sbjct: 106 ELDEYSNRVANFLLQQGFREGDVVALFMENRHQYVGLWLGMAKIGVEAALINFNLRLEAL 165
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPD-LP----NLSDLMKTT 623
VH ++ +KA++ + + + S+ VKLF+ E P +P +L L++TT
Sbjct: 166 VHCVNISSAKAVVFGSELTEAMCEVHSSMGKTVKLFVSGEWDPKRVPVGTEHLDPLLETT 225
Query: 624 PASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
S ++P +P ++ +D L YIYTSGTTG+PKAAI+ + + + + + DV+Y
Sbjct: 226 --STIQPKQPDRSFTDRLFYIYTSGTTGMPKAAIVVHSRYYRMAALVYYGFRMKPEDVLY 283
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G LI G ++ IR KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 284 DCLPLYHSAGNIVGIGQGLIHGMTVVIRKKFSASKFWDDCIKYNCTIVQYIGEICRYLLN 343
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
+ + H+V +G G+R IW +F RF+V I EFYGATE N +L N DN GA
Sbjct: 344 QPRKDTERKHKVRMALGNGLRQSIWEEFTNRFNVPQIAEFYGATECNCSLGNFDNKTGAC 403
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +LP +++P+ +++ D + IR P G+CI C +PG ++G I Q+DP R F
Sbjct: 404 GFNSRILP-YVYPIRLVKVDEETMELIRGPD-GVCIPCGPGEPGQLVGRIIQNDPLRRFD 461
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY ++ + KKI ++VFK GD +LSGD++VMD+ GY+YF+DRTGDT+RWKGENVST EV
Sbjct: 462 GYVNQTATNKKIAQDVFKKGDSAYLSGDVLVMDDFGYMYFRDRTGDTFRWKGENVSTTEV 521
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E T+S+ L + VYGV+V +G+AGM AI D N DL + L+ LP YARP+F
Sbjct: 522 EGTLSRLLDMKDVVVYGVEVPGAEGKAGMAAIADPENNTDLAKFSRDLEKALPPYARPVF 581
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYV--RQGSEFVRMTPNTYEKIMN 1037
+R + ++ TGTFK +K ++ +GFDP+ +SD LY R ++V + + I++
Sbjct: 582 LRFLPEVDKTGTFKFQKTDMRRDGFDPNIVSDKLYFLDRTKGQYVELNAELHRNIVS 638
|
|
| UNIPROTKB|Q0VCQ2 SLC27A4 "Solute carrier family 27 (Fatty acid transporter), member 4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
Identities = 240/540 (44%), Positives = 339/540 (62%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+D YSN +A LQ G GDV+AL ENR E+VG+WLG AKLGV +ALINTNL++ L
Sbjct: 106 QLDNYSNSVANFLQAQGLASGDVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPD-LP----NLSDLMKTT 623
+H +++ +++A++ + P + I ++ P + F +P +P +L L++
Sbjct: 166 LHCLTSSQARALVFGSEMAPAVLEIHANLDPSLNFFCSGPWEPSTVPAGTKHLDPLLEDA 225
Query: 624 PASEVKPSEPLQTS-DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + PS P + D L YIYTSGTTGLPKAAI+ + + + + + D++Y
Sbjct: 226 PKHQ--PSRPNKGFVDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPDDIVY 283
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G LI G ++ IR KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 284 DCLPLYHSAGNIVGIGQCLIHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLN 343
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
EA+ H+V +G G+R IW F RFH+ + EFYGATE N +L N D GA
Sbjct: 344 QPPREAEGQHRVRMALGNGLRQCIWTDFCSRFHIPQVAEFYGATECNCSLGNFDGQVGAC 403
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L +F++P+ +++ + + IR P GLCI CK +PG ++G I Q DP R F
Sbjct: 404 GFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GLCIPCKPGEPGQLVGVIIQEDPLRRFD 461
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY ++ + KKI +VFK GD+ +LSGD++VMDELGY+YF+DRTGDT+RWKGENVST EV
Sbjct: 462 GYLNQGTNDKKIAGDVFKKGDQAYLSGDVLVMDELGYVYFRDRTGDTFRWKGENVSTTEV 521
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E T+S+ L + VYGV+V +GRAGM A+ +S DL+ L Q L LP YARP+F
Sbjct: 522 EGTLSRLLDMADVAVYGVEVPGTEGRAGMAAVASSSGSCDLEHLAQLLQKELPLYARPIF 581
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKIMNDQ 1039
+R + + TGTFK++K +LQ EGFDP+ + D L+ R+G +V + Y +I Q
Sbjct: 582 LRFLPELHKTGTFKLQKTELQKEGFDPTVVKDQLFYLDARKG-RYVPLDQEAYTRIQAGQ 640
|
|
| UNIPROTKB|Q6P1M0 SLC27A4 "Long-chain fatty acid transport protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 1.7e-137, Sum P(2) = 1.7e-137
Identities = 234/535 (43%), Positives = 337/535 (62%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+DEYS+ +A LQ G GDV A+ ENR E+VG+WLG AKLGV +ALINTNL++ L
Sbjct: 106 QLDEYSSSVANFLQARGLASGDVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPD-LP----NLSDLMKTT 623
+H ++T +++A++ + I + S+ P + LF +P +P +L L+K
Sbjct: 166 LHCLTTSRARALVFGSEMASAICEVHASLDPSLSLFCSGSWEPGAVPPSTEHLDPLLKDA 225
Query: 624 PASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P PS P + +D L YIYTSGTTGLPKAAI+ + + + + + D++Y
Sbjct: 226 PKH--LPSCPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVY 283
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G L+ G ++ IR KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 284 DCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLN 343
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
EA+ HQV +G G+R IW F RFH+ + EFYGATE N +L N D+ GA
Sbjct: 344 QPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGAC 403
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L +F++P+ +++ + + IR P G+CI C+ +PG ++G I Q DP R F
Sbjct: 404 GFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GVCIPCQPGEPGQLVGRIIQKDPLRRFD 461
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY ++ + KKI ++VFK GD+ +L+GD++VMDELGYLYF+DRTGDT+RWKGENVST EV
Sbjct: 462 GYLNQGANNKKIAKDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEV 521
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E T+S+ L + VYGV+V +GRAGM A+ + DL+ Q L+ LP YARP+F
Sbjct: 522 EGTLSRLLDMADVAVYGVEVPGTEGRAGMAAVASPTGNCDLERFAQVLEKELPLYARPIF 581
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYV--RQGSEFVRMTPNTYEKI 1035
+R++ + TGT+K +K +L+ EGFDP+ + D L+ Q +V + Y +I
Sbjct: 582 LRLLPELHKTGTYKFQKTELRKEGFDPAIVKDPLFYLDAQKGRYVPLDQEAYSRI 636
|
|
| MGI|MGI:1347347 Slc27a4 "solute carrier family 27 (fatty acid transporter), member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 239/536 (44%), Positives = 335/536 (62%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+DEYS+ +A LQ G G+V+AL ENR E+VG+WLG AKLGV +ALINTNL++ L
Sbjct: 106 QLDEYSSSVANFLQARGLASGNVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPD-LP----NLSDLMKTT 623
H + T K++A+I + I I S+ P + LF +P +P +L L++
Sbjct: 166 RHCLDTSKARALIFGSEMASAICEIHASLEPTLSLFCSGSWEPSTVPVSTEHLDPLLEDA 225
Query: 624 PASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P PS P + +D L YIYTSGTTGLPKAAI+ + + + + + D++Y
Sbjct: 226 PKH--LPSHPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMASLVYYGFRMRPDDIVY 283
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G L+ G ++ IR KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 284 DCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLN 343
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
EA+ H+V +G G+R IW F RFH+ + EFYGATE N +L N D+ GA
Sbjct: 344 QPPREAESRHKVRMALGNGLRQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSRVGAC 403
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L +F++P+ +++ + + IR P G+CI C+ QPG ++G I Q DP R F
Sbjct: 404 GFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GVCIPCQPGQPGQLVGRIIQQDPLRRFD 461
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY ++ + KKI +VFK GD+ +L+GD++VMDELGYLYF+DRTGDT+RWKGENVST EV
Sbjct: 462 GYLNQGANNKKIANDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEV 521
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E T+S+ L + VYGV+V +GRAGM A+ + DL+ Q L LP YARP+F
Sbjct: 522 EGTLSRLLHMADVAVYGVEVPGTEGRAGMAAVASPISNCDLESFAQTLKKELPLYARPIF 581
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
+R + + TGTFK +K +L+ EGFDPS + D L+ R+G +V + Y +I
Sbjct: 582 LRFLPELHKTGTFKFQKTELRKEGFDPSVVKDPLFYLDARKGC-YVALDQEAYTRI 636
|
|
| MGI|MGI:1347098 Slc27a1 "solute carrier family 27 (fatty acid transporter), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 231/536 (43%), Positives = 339/536 (63%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + + GF GDV+A+ E RPE+VG+WLG AK GV++AL+N NL+++P
Sbjct: 107 AQLDTYSNAVANLFRQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETKPD--LPN---LSDLMKT 622
L + T +KA+I + + E + L F + P+ LP+ L ++
Sbjct: 167 LAFCLGTSAAKALIYGGEMAAAVAEVSEQLGKSLLKFCSGDLGPESILPDTQLLDPMLAE 226
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + + + D L YIYTSGTTGLPKAAI+ + + G H S+ + DV+Y
Sbjct: 227 APTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRAADVLY 286
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G +I G ++ +R KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 287 DCLPLYHSAGNIMGVGQCVIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLR 346
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
+ + H+V +G G+R IW +F +RF V I EFYGATE N ++ NMD G+
Sbjct: 347 QPVRDVEQRHRVRLAVGNGLRPAIWEEFTQRFGVPQIGEFYGATECNCSIANMDGKVGSC 406
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L T ++P+ +++ + +P+RD + GLCI C+ +PG+++G+I Q DP R F
Sbjct: 407 GFNSRIL-THVYPIRLVKVNEDTMEPLRDSE-GLCIPCQPGEPGLLVGQINQQDPLRRFD 464
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY + KKI +VF+ GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST EV
Sbjct: 465 GYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEV 524
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
EA +S+ L T+ VYGV V ++G+AGM AI D +Q+D + Q L L +YARP+F
Sbjct: 525 EAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPHSQLDPNSMYQELQKVLASYARPIF 584
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
+R++ ++ TGTFKI+K +LQ EGFDP Q SD L+ ++QG +V + + +I
Sbjct: 585 LRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQG-RYVPLDERVHARI 639
|
|
| UNIPROTKB|G3V7V3 Slc27a4 "Solute carrier family 27 (Fatty acid transporter), member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1154 (411.3 bits), Expect = 5.9e-135, Sum P(2) = 5.9e-135
Identities = 241/540 (44%), Positives = 340/540 (62%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+D+YS+ +A LQ G G+V+AL ENR E+VG+WLG AKLGV +ALINTNL++ L
Sbjct: 106 QLDDYSSSVANFLQARGLVSGNVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165
Query: 570 VHSISTVKSKAII-----VSALYYPEIEAIRESIPDVKLFLLDETKPD-LP----NLSDL 619
H + T K++A+I SA+Y EI+AI + P + LF +P +P +L L
Sbjct: 166 RHCLDTSKARALIFGSEMASAVY--EIQAILD--PTLTLFCSGSWEPSTVPANTEHLDPL 221
Query: 620 MKTTPASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSG 678
++ P PS P + +D L YIYTSGTTGLPKAAI+ + + + + +
Sbjct: 222 LEDAPKH--LPSIPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPD 279
Query: 679 DVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCR 738
D++Y+CLP+YHSAG ++G ++ G ++ IR KFSAS ++ DC KY C YIGE+CR
Sbjct: 280 DIVYDCLPLYHSAGNIVGIGQCVLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCR 339
Query: 739 YLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT 798
YLL EA+ H+V +G G+R IW F RFH+ + EFYGATE N +L N D+
Sbjct: 340 YLLNQPPREAESRHKVRMALGNGLRQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSQ 399
Query: 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
GA G +L +F++P+ +++ + + IR P G+CI C+ QPG ++G I Q DP
Sbjct: 400 VGACGFNSRIL-SFVYPIRLVRVNEDTMELIRGPD-GVCIPCQPGQPGQLVGRIIQQDPL 457
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
R F GY ++ + KKI +VFK GD+ +L+GD++VMDELGYLYF+DRTGDT+RWKGENVS
Sbjct: 458 RRFDGYLNQGANNKKIASDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVS 517
Query: 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYA 978
T EVE T+S+ L + VYGV+V +GRAGM A+ ++ DL+ Q L LP YA
Sbjct: 518 TTEVEGTLSRLLQMADVAVYGVEVPGAEGRAGMAAVASPTSNCDLESFAQTLKKELPLYA 577
Query: 979 RPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
RP+F+R + + TGTFK +K +L+ EGFDPS + D L+ R G +V + Y +I
Sbjct: 578 RPIFLRFLPELHKTGTFKFQKTELRKEGFDPSVVKDPLFYLDARTGC-YVALDQEAYTRI 636
|
|
| UNIPROTKB|F1PAM6 SLC27A4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 232/536 (43%), Positives = 342/536 (63%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+D+YS+ +A LQ G GDV AL ENR E+VG+WLG AKLGV +ALINTNL++ L
Sbjct: 106 QLDDYSSSVANFLQARGLASGDVAALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPD-LP----NLSDLMKTT 623
H ++T +++ +I + P I I+ S+ P + LF +P LP +L L++
Sbjct: 166 CHCLTTSQARVLIFGSEMAPAIFEIQASLDPSLSLFCSGPWEPSTLPASTEHLDPLLEDA 225
Query: 624 PASEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P PS P + +D L YIYTSGTTGLPKAAI+ + + + + + D++Y
Sbjct: 226 PKH--LPSRPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPDDIVY 283
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G L+ G ++ IR KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 284 DCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLN 343
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
EA++ H+V +G G+R IW F RFH+ + EFYGATE N ++ N D+ GA
Sbjct: 344 QPPREAEHQHRVRMALGNGLRQSIWTDFSSRFHIPQVAEFYGATECNCSVGNFDSQVGAC 403
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L +F++P+ +++ + + IR P G+C+ C+ +PG ++G I Q DP R F
Sbjct: 404 GFNSRIL-SFVYPIRLVRVNEDTMELIRGPN-GVCLPCQPGEPGQLVGRIIQQDPLRRFD 461
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY ++ S KKI ++VF+ GD+ +L+GD++VMDELGYLYF+DRTGDT+RWKGENVST EV
Sbjct: 462 GYLNQGASNKKIAKDVFQKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEV 521
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
E T+S+ L T+ VYGV+V +GRAGM A+ +++ DL+ Q L+ LP YA+ L
Sbjct: 522 EGTLSRLLDMTDVAVYGVEVPGTEGRAGMAAVANSAGSCDLEHFAQLLEKELPLYAKTLL 581
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
+++ I +GTFK++K++L+ EGF+P+ + D L+ R+G +V + Y +I
Sbjct: 582 LKLFD-ISPSGTFKLQKMELRKEGFNPAVVRDPLFYLDARKG-RYVPLDQKAYARI 635
|
|
| RGD|620927 Slc27a1 "solute carrier family 27 (fatty acid transporter), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 4.1e-134, Sum P(2) = 4.1e-134
Identities = 227/522 (43%), Positives = 332/522 (63%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + GF GDV+A+ E RPE+VG+WLG AK GV++AL+N NL+++P
Sbjct: 107 AQLDTYSNAVANLFLQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETKPD--LPN---LSDLMKT 622
L + T +KA+I + + E + L F + P+ LP+ L ++
Sbjct: 167 LAFCLGTSAAKALIYGGEMAAAVAEVSEQLGKSLLKFCSGDLGPESVLPDTQLLDPMLAE 226
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + + + D L YIYTSGTTGLPKAAI+ + + G H S+ + DV+Y
Sbjct: 227 APTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRANDVLY 286
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+CLP+YHSAG ++G +I G ++ +R KFSAS ++ DC KY C YIGE+CRYLL
Sbjct: 287 DCLPLYHSAGNIMGVGQCIIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLR 346
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
+ + H+V +G G+R IW +F + F V+ I EFYGATE N ++ NMD G+
Sbjct: 347 QPVRDVERRHRVRLAVGNGLRPAIWEEFTQGFGVRQIGEFYGATECNCSIANMDGKVGSC 406
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862
G +L T ++P+ +++ + +P+RD + GLCI C+ +PG+++G+I Q DP R F
Sbjct: 407 GFNSRIL-THVYPIRLVKVNEDTMEPLRDSQ-GLCIPCQPGEPGLLVGQINQQDPLRRFD 464
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY + KKI +VF+ GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST EV
Sbjct: 465 GYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEV 524
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982
EA +S+ L T+ VYGV V ++G++GM AI D NQ+D + Q L L +YA+P+F
Sbjct: 525 EAVLSRLLGQTDVAVYGVAVPGVEGKSGMAAIADPHNQLDPNSMYQELQKVLASYAQPIF 584
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQG 1021
+R++ ++ TGTFKI+K +LQ EGFDP Q SD L+ ++QG
Sbjct: 585 LRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQG 626
|
|
| UNIPROTKB|Q6PCB7 SLC27A1 "Long-chain fatty acid transport protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1148 (409.2 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
Identities = 232/539 (43%), Positives = 340/539 (63%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+D YSN +A + + GF GDV+A+ E RPE+VG+WLG AK G+ +AL+N NL+++P
Sbjct: 107 AQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREP 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETKPD--LPN---LSDLMK- 621
L + T +KA+I + + + + F + P+ LP+ L L+K
Sbjct: 167 LAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKE 226
Query: 622 --TTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD 679
T P +++ PS+ + D L YIYTSGTTGLPKAAI+ + + G H + + D
Sbjct: 227 ASTAPLAQI-PSKGMD--DRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAAD 283
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
V+Y+CLP+YHSAG +IG LI G ++ +R KFSAS ++ DC KY C YIGE+CRY
Sbjct: 284 VLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRY 343
Query: 740 LLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE 799
LL EA+ H+V +G G+R IW +F +RF V+ I EFYGATE N ++ NMD
Sbjct: 344 LLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKV 403
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
G+ G +LP ++P+ +++ + + +RD + GLCI C+ +PG+++G+I Q DP R
Sbjct: 404 GSCGFNSRILP-HVYPIRLVKVNEDTMELLRDAQ-GLCIPCQAGEPGLLVGQINQQDPLR 461
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY + + KKI +VF GD +LSGD++VMDELGY+YF+DR+GDT+RW+GENVST
Sbjct: 462 RFDGYVSESATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVST 521
Query: 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYAR 979
EVE +S+ L T+ VYGV V ++G+AGM A+ D + +D + Q L L YAR
Sbjct: 522 TEVEGVLSRLLGQTDVAVYGVAVPGVEGKAGMAAVADPHSLLDPNAIYQELQKVLAPYAR 581
Query: 980 PLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLY---VRQGSEFVRMTPNTYEKI 1035
P+F+R++ ++ TGTFKI+K +LQ EGFDP Q SD L+ ++QG ++ + Y +I
Sbjct: 582 PIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQG-HYLPLNEAVYTRI 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1102 | |||
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 0.0 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 0.0 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-163 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 1e-163 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 1e-123 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-76 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 7e-69 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-64 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-63 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-49 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 6e-49 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 4e-44 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-35 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-32 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-32 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-31 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-28 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 4e-28 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-24 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-24 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-23 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 5e-23 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 6e-23 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 8e-23 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-22 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-22 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-22 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 4e-22 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 8e-22 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-21 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 3e-20 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-20 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 6e-20 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-20 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-19 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-19 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 7e-19 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-18 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-18 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-18 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 7e-18 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-17 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-16 | |
| PRK07868 | 994 | PRK07868, PRK07868, acyl-CoA synthetase; Validated | 1e-16 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-16 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 4e-16 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 8e-16 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 1e-15 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-15 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-15 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 5e-15 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 5e-15 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 5e-15 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 1e-14 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-14 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 3e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 6e-14 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-14 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 9e-14 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-13 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 3e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-13 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 6e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-12 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-12 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-12 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 4e-12 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-12 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 7e-12 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 7e-12 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-11 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 1e-11 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-11 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-11 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-11 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-11 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 3e-11 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-11 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 5e-11 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 7e-11 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 7e-11 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-10 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 2e-10 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 3e-10 | |
| pfam00567 | 118 | pfam00567, TUDOR, Tudor domain | 3e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 5e-10 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 6e-10 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 7e-10 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 7e-10 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 7e-10 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-09 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-09 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-09 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-09 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-08 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-08 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-08 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-08 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-08 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 6e-08 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 7e-08 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 7e-08 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-08 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-07 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 3e-07 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-07 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-07 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 4e-07 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 5e-07 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-07 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 6e-07 | |
| cd04508 | 48 | cd04508, TUDOR, Tudor domains are found in many eu | 6e-07 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 7e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 9e-07 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 9e-07 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-06 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-06 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-06 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 2e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-06 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 3e-06 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 3e-06 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 3e-06 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 4e-06 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 4e-06 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 4e-06 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 5e-06 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 6e-06 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 7e-06 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 7e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 8e-06 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 8e-06 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 9e-06 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 9e-06 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 9e-06 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-05 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-05 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-05 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-05 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-05 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-05 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-05 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-05 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-05 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-05 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 4e-05 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 4e-05 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 5e-05 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 6e-05 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-05 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 7e-05 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 7e-05 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 8e-05 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 9e-05 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 9e-05 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-04 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 1e-04 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-04 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 1e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-04 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-04 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-04 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-04 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-04 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-04 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 3e-04 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-04 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-04 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 4e-04 | |
| smart00333 | 57 | smart00333, TUDOR, Tudor domain | 4e-04 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 5e-04 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-04 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-04 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-04 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 6e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-04 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 8e-04 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 9e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 9e-04 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 9e-04 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 0.001 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 0.001 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 0.001 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 0.001 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 0.001 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 0.002 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.002 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 0.003 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 0.003 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 0.003 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 0.004 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.004 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 0.004 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 642 bits (1658), Expect = 0.0
Identities = 225/535 (42%), Positives = 311/535 (58%), Gaps = 15/535 (2%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ +N+ A G KGDV+AL+ ENRPEY+ WLG AKLG + AL+NT +
Sbjct: 66 AELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAV 125
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPDLP----NLSDLMKTT 623
L HS++ V +K +IV E R + +L++ D P +L+
Sbjct: 126 LAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGA 185
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
P + + D+ YIYTSGTTGLPKAA+M + + L LL L DV+Y
Sbjct: 186 PTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYC 245
Query: 684 CLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS 743
CLP+YH+ GG + L G+++A+R KFSAS ++ D +Y+ A YIGE+CRYLL
Sbjct: 246 CLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQ 305
Query: 744 KESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVG 803
D H++ MIG G+R DIW +F +RF + I+EFY A+EGN +N+ N +G VG
Sbjct: 306 PPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFDGTVG 365
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
+P L HP AI+++D+ +P+RD G CI+ K + G++IG I F G
Sbjct: 366 RVPLWLA---HPYAIVKYDVDTGEPVRDAD-GRCIKVKPGEVGLLIGRI---TDRGPFDG 418
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
Y D + S+KKIL +VFK GD +F +GD+M D G+ F DR GDT+RWKGENV+T EVE
Sbjct: 419 YTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVE 478
Query: 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLF 982
+S + E VYGV+V DGRAGM AIV + DL L L LPAYA PLF
Sbjct: 479 NALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLF 538
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSE--FVRMTPNTYEKI 1035
VR++ +E TGTFK +K+ L+ EGFDPS++ D LYV +V +T Y +I
Sbjct: 539 VRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGSGGYVPLTAELYAEI 593
|
Length = 600 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 605 bits (1561), Expect = 0.0
Identities = 236/501 (47%), Positives = 321/501 (64%), Gaps = 33/501 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++EYSNK+A Q G++ GDV+AL ENR E+V +WLG AK+GV +ALIN+NL+ +
Sbjct: 7 RELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRLES 66
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+H I+ K+KA+I NL D + T ++E
Sbjct: 67 LLHCITVSKAKALIF-------------------------------NLLDPLLTQSSTEP 95
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ + D L YIYTSGTTGLPKAA++ + + + + DV+Y+CLP+Y
Sbjct: 96 PSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLY 155
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
HSAGG++G AL+ GS++ IR KFSASN++ DC KY C YIGE+CRYLLA SE
Sbjct: 156 HSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIGEICRYLLAQPPSEE 215
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808
+ H V +G G+R IW +FV+RF + I EFYGATEGN++LVN+DN GA G +
Sbjct: 216 EQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRI 275
Query: 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868
LP ++P+ +I+ D + IRD GLCI C+ +PG+++G+I Q+DP R F GY ++
Sbjct: 276 LP-SVYPIRLIKVDEDTGELIRDSD-GLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEG 333
Query: 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK 928
+ KKI +VFK GD FLSGD++VMDELGYLYFKDRTGDT+RWKGENVST EVE +S
Sbjct: 334 ATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSN 393
Query: 929 YLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKA 988
L + VYGV+V ++GRAGM AIVD +VDL L +LP YARP F+R++
Sbjct: 394 VLGLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPE 453
Query: 989 IEMTGTFKIKKIQLQNEGFDP 1009
++ TGTFK++K LQ EG+DP
Sbjct: 454 VDKTGTFKLQKTDLQKEGYDP 474
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 491 bits (1267), Expect = e-163
Identities = 213/540 (39%), Positives = 316/540 (58%), Gaps = 27/540 (5%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
A++D+ SN++AR L G K GD +AL+ N P ++ +WLG AKLG +A +NTN++
Sbjct: 7 AEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSG 66
Query: 568 PLVHSISTVKSKAIIVSALYYPEI-EAIRESIPD-----VKLFLL--DETKPDLPNLSDL 619
L+H ++ ++ PE+ EA+ E +P V++F L + +L
Sbjct: 67 SLLHCFRCCGARVLVAD----PELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLLAK 122
Query: 620 MKTTPASEVKPS--EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS 677
+ V S + + LYIYTSGTTGLPKAA + + +VL + L + +
Sbjct: 123 VDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGM-LSLCGVTA 181
Query: 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMC 737
DV+Y LP+YHS+G L+G + + LG+++ ++ KFSAS ++ DC KY YIGE+
Sbjct: 182 DDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYIGELL 241
Query: 738 RYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN 797
RYL +S+ D H+V IG G+R D+W +F++RF + E Y +TEGN +N
Sbjct: 242 RYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEGNIGFINYTG 301
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
GAVG + L L P +I++D+ +++P+RD G CI +PG++I +I P
Sbjct: 302 RVGAVGRA-SCLYKLLSPFELIKYDVEKDEPVRDA-QGFCIPVGKGEPGLLISKITSQSP 359
Query: 858 SRHFYGYA-DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
F GYA ++ ++KK+L +VFK GD YF +GD++V D +LYF DRTGDT+RWKGEN
Sbjct: 360 ---FLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGEN 416
Query: 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV-DLKLLVQGLDANLP 975
V+T EV ++ E VYGV V +GRAGM A++ DL+ L Q + LP
Sbjct: 417 VATTEVADILTMVDFIQEVNVYGVTVPGHEGRAGMAAVILKPGTEFDLEKLYQHVREFLP 476
Query: 976 AYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYV---RQGSEFVRMTPNTY 1032
AYARP F+RI ++E+TGTFK +K++L EGF+PS ISD LY R+ S +V +T Y
Sbjct: 477 AYARPRFLRIQDSMEVTGTFKQQKVRLVEEGFNPSIISDPLYFLDNREKS-YVPLTQEIY 535
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 488 bits (1258), Expect = e-163
Identities = 178/373 (47%), Positives = 235/373 (63%), Gaps = 11/373 (2%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
D YIYTSGTTGLPKAAIM + + L G V L L DV+Y CLP+YHS +G
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGW 141
Query: 698 IPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKM 757
AL G+S+A+R KFSAS ++ D +Y A Y+GE+CRYLL E D H + K+
Sbjct: 142 SSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPLRKI 201
Query: 758 IGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVA 817
IG G+R DIW +F +RF V I+EFYG+TEGN +N+ N GAVG +P +A
Sbjct: 202 IGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKPGAVGRLPPA------AIA 255
Query: 818 IIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILEN 877
++++D+ +PIRD G CI+ + G+++GEI +D + F GY D + ++KKIL +
Sbjct: 256 VVKYDVETEEPIRDAN-GFCIKVPPGEVGLLLGEI--TDRNP-FDGYTDDEATEKKILRD 311
Query: 878 VFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937
VFK GD YF +GD++ D GY YF DR GDT+RWKGENVST EVE ++K+ E V
Sbjct: 312 VFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANV 371
Query: 938 YGVKVGDLDGRAGMIAIVDTSNQV-DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996
YGV+V +GRAGM A+ D + LD LPAYARPLF+R+ A+E TGTFK
Sbjct: 372 YGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFK 431
Query: 997 IKKIQLQNEGFDP 1009
+K L+ EGFDP
Sbjct: 432 YQKTDLRKEGFDP 444
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 386 bits (993), Expect = e-123
Identities = 172/511 (33%), Positives = 244/511 (47%), Gaps = 63/511 (12%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ + + A L D + GD +A+ N E+V +WL +G + A IN NL P
Sbjct: 10 ETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLSGDP 69
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+H + +K +IV D P
Sbjct: 70 LIHCLKISGAKFVIV-----------------------DPDDP----------------- 89
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ L IYTSGTTGLPK + + L+ H L+L D Y C+P+Y
Sbjct: 90 ----------AAL-IYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLY 138
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
H +G L G ++ + KFSAS +++D + Y+GE+CRYLLA+ S
Sbjct: 139 HGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPPSPY 198
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM---DNTEGAVGII 805
D H+V G G+R DIW +F +RF+V I EFY ATEG N T GA+G
Sbjct: 199 DRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPFTAGAIGFS 258
Query: 806 PTLLPTFLH-PVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+ FL V +++ D + PIRDPKTG C+R +PG ++G ++ F GY
Sbjct: 259 GLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVR-FKNRELFQGY 317
Query: 865 -ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
++ ++ K+L +VF+ GD ++ +GD++ D G YF DR GDT+RWK ENVST EV
Sbjct: 318 LKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVA 377
Query: 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVD-----LKLLVQGLDANLPAYA 978
+ E VYGVKV DGRAG AI + LL + LP+YA
Sbjct: 378 DVLGAIPSVAEANVYGVKVPGYDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYA 437
Query: 979 RPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009
PLF+R+ + + TG K +K L+ EG DP
Sbjct: 438 VPLFLRLTEEVATTGNHKQQKGVLRKEGVDP 468
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 2e-76
Identities = 129/517 (24%), Positives = 221/517 (42%), Gaps = 48/517 (9%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D +N++A LQ G K GD +A++ N PE++ +L A + G ++ +N L +
Sbjct: 42 RELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRE 101
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP--NLSDLMKTTPAS 626
L + ++ +K +I SA + +EA+ E++P V + LL D L L P
Sbjct: 102 LAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGP 161
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS--LGSGDVIYNC 684
+ + P+ D +YTSGTTGLPK ++ + +L L L DV+ +
Sbjct: 162 DA-DARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSW 220
Query: 685 LPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
LP++H G ++G + L+ G ++ + F KYK + R LL
Sbjct: 221 LPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLD 280
Query: 743 SKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN----- 794
+ E + D ++++ G + ++ +F +RF I+E YG TE + +
Sbjct: 281 NPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD 340
Query: 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ 854
+ G+VG L V + I DP G + PG +GEI
Sbjct: 341 LLAKPGSVGRP-------LPGVEVR---------IVDPDGGEVL------PGE-VGEIWV 377
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
P+ GY ++ E+ + + D + +GD+ +DE GYLY R D G
Sbjct: 378 RGPNV-MKGYWNRPEATAEAFDE-----DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGG 431
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV---DTSNQVDLKLLVQGLD 971
EN+ E+EA ++++ E V GV G + +V ++ + L L
Sbjct: 432 ENIYPEEIEAVLAEHPAVAEAAVVGVPDERW-GERVVAVVVLKPGGDAELTAEELRAFLR 490
Query: 972 ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008
L Y P V + + T + KI + L+ E
Sbjct: 491 KRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527
|
Length = 534 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 7e-69
Identities = 120/498 (24%), Positives = 202/498 (40%), Gaps = 88/498 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E N++A L G + GD +ALM +N PE++ W KLG ++ INT L+ +
Sbjct: 7 AELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEE 66
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H + ++ I+V A+
Sbjct: 67 LAHILDHSGARLIVVD---------------------------------------TAA-- 85
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+LY TSGTTG PK ++ + ++L ++ LL L DV+ LP++
Sbjct: 86 -----------ILY--TSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLF 132
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
H AL++G+++ + +FSAS ++ K+ +G M L+ S
Sbjct: 133 HINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPD 192
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808
D H + + G + IW F +RF V+ ++E YG TE ++ + P
Sbjct: 193 DRDHPLRFVFGAPLPAAIWPAFEERFGVK-LVEGYGMTETGVPIIAPGD--------PAP 243
Query: 809 LPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865
+ P ++ +V + + + + G L +R + GY
Sbjct: 244 PGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFK--------------GYY 289
Query: 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925
E+ K N + F +GD DE G+LYF DR D R +GEN+S+ EVEA
Sbjct: 290 GMPEATAKAWRNGW------FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAA 343
Query: 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDL-KLLVQGLDANLPAYARPLFVR 984
I + E V V +L +V + + L++ LP + P ++
Sbjct: 344 ILAHPAVAEAAVVAVP-SELGEDEVKAVVVLRPGETLDPEALLEFCRDRLPYFMVPRYIE 402
Query: 985 IMKAIEMTGTFKIKKIQL 1002
+ + T T KI+K +L
Sbjct: 403 FVDELPKTPTEKIQKAEL 420
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 1e-64
Identities = 91/426 (21%), Positives = 172/426 (40%), Gaps = 29/426 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++DE +N++A L+ G GD +A++ N PE+V L K G ++ +L +
Sbjct: 3 RELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAER 62
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + + ++K +I P++ + + + ++ + +L D AS
Sbjct: 63 LAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAE 122
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
P+ P+ D IYTSGTTG PK ++ + +L L GD + LP
Sbjct: 123 PPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLP-L 181
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFS--ASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746
H G + L+ G ++ + KF+ + KYK + + R LL + E
Sbjct: 182 HFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEE 241
Query: 747 EADY--SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804
+ S ++V G + ++ + +RF ++ YG TE + V
Sbjct: 242 KKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKP 301
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
P+ ++ ++ D + P +GE+ P GY
Sbjct: 302 GSI-----GRPLPGVEVKVL------DEEGEPV-------PPGEVGELCIRGPGV-ARGY 342
Query: 865 -ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
D + + ++ +E+ + + +GD+ DE GYL R D + +GE + E+E
Sbjct: 343 LNDPELTAERFVEDGWGM----YRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIE 398
Query: 924 ATISKY 929
A + ++
Sbjct: 399 AVLLEH 404
|
Length = 412 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 1e-63
Identities = 137/504 (27%), Positives = 230/504 (45%), Gaps = 31/504 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ + A L G K+GD +ALMC NR E++ V+LG A LG I+ INT L+
Sbjct: 50 AEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQ 109
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRES-IPDVKLFLLDE-TKPDLPNLSDLMKTTPAS 626
L H + ++ ++V A +EA +P ++LLD +P P
Sbjct: 110 LEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLD 169
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
P+ +Q D+ +YTSGTTG K P+ + G+ L +G+ DV+Y LP
Sbjct: 170 APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLP 229
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746
++H+ L AL+ G++ + +FSAS ++ ++ +G M LL+
Sbjct: 230 LFHT-NALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR 288
Query: 747 EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIP 806
E+D +H+V +G G+ + A F +RF V +++ YG+TE N ++ + + G +
Sbjct: 289 ESDRAHRVRVALGPGVPAALHAAFRERFGVD-LLDGYGSTETNF-VIAVTHGSQRPGSMG 346
Query: 807 TLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866
L P F V D +Q + D +PG ++ ++ +P GY
Sbjct: 347 RLAPGFEARVV----D-EHDQELPD-----------GEPGELL--LRADEPFAFATGYFG 388
Query: 867 KKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI 926
E + N+ +F +GD +V D G+ F DR D R +GEN+S+ EVE +
Sbjct: 389 MPEKTVEAWRNL------WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL 442
Query: 927 SKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRI 985
+ V+ V +L M A+V ++ LV+ + L +A P +V
Sbjct: 443 LSHPAVAAAAVFPVP-SELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEF 501
Query: 986 MKAIEMTGTFKIKKIQLQNEGFDP 1009
+ A+ T K++K L+ +G
Sbjct: 502 VAALPKTENGKVQKFVLREQGVTA 525
|
Length = 542 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-49
Identities = 134/515 (26%), Positives = 222/515 (43%), Gaps = 68/515 (13%)
Query: 538 ENRPEYVGVWLGAAKLG--VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIR 595
N PE + WL AA LG V+ +NT + L I + ++ A + P ++ +
Sbjct: 60 GNTPEML-FWLAAAALGGYVLVG-LNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGL- 116
Query: 596 ESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAA 655
+P V++ +D P ++L+ A + P + D + I+TSGTTG PKA
Sbjct: 117 -DLPGVRVLDVDT-----PAYAELVA--AAGALTPHREVDAMDPFMLIFTSGTTGAPKAV 168
Query: 656 IMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715
+ ++ G+ L DV Y +P++HS + G PA+ G+++A+ KFSA
Sbjct: 169 RCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSA 228
Query: 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMR---GDIWAKFVK 772
S + D +Y Y+G+ Y+LA+ E D + + + G DI A+F +
Sbjct: 229 SGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLR--VAFGNEASPRDI-AEFSR 285
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNT-EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRD 831
RF Q + + YG++EG +V T G++G I +
Sbjct: 286 RFGCQ-VEDGYGSSEGAVIVVREPGTPPGSIG----------RG--------APGVAIYN 326
Query: 832 PKTG-LCIRCKYNQPGMI------IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDK 884
P+T C +++ G + IGE+ + + F GY + E+ + + + G
Sbjct: 327 PETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRH----GM- 381
Query: 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944
+ SGD+ D G++YF RT D R GEN+S +E + ++ VY V
Sbjct: 382 -YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVP--- 437
Query: 945 LDGRAG---MIAIV-DTSNQVDLKLLVQGLDA--NLPAYARPLFVRIMKAIEMTGTFKIK 998
D R G M A+V D L A +L A P +VRI + T T K+
Sbjct: 438 -DERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVL 496
Query: 999 KIQLQNEGFDPSQISDDLYV---RQGSEFVRMTPN 1030
K +L +G+ D + + R G + M+
Sbjct: 497 KRELIAQGWA---TGDPVTLWVRRGGPAYRLMSEP 528
|
Length = 540 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 6e-49
Identities = 139/486 (28%), Positives = 210/486 (43%), Gaps = 55/486 (11%)
Query: 538 ENRPEYVGVWLGAAKL-GVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRE 596
+N PE+ + LGAA L G++ +N + L I+ + ++ + E +
Sbjct: 62 DNTPEF-SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTES---AHAELLDG 117
Query: 597 SIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
P V++ +D P +D + +E D + I+TSGT+G PKA
Sbjct: 118 LDPGVRVINVDS-----PAWADELAAHRDAEPPFRVA-DPDDLFMLIFTSGTSGDPKAVR 171
Query: 657 MPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716
+ KV G + LG DV Y +P++HS + G AL G+SIA+R KFSAS
Sbjct: 172 CTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSAS 231
Query: 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGV-GMRGDIWAKFVKRFH 775
+ D +Y Y+G+ Y+LA+ E D + + + G G GDI A+F +RF
Sbjct: 232 GFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGDI-ARFARRFG 290
Query: 776 VQTIIEFYGATEGNANLVNMDNT-EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKT 834
+++ +G+TEG + +T GA+G L I DP T
Sbjct: 291 C-VVVDGFGSTEGGVAITRTPDTPPGALGP------------------LPPGVAIVDPDT 331
Query: 835 GL-CIRCKYNQPGMI-----IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLS 888
G C + ++ IGE+ + F GY + E+ + + + S
Sbjct: 332 GTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR------GGVYWS 385
Query: 889 GDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV---KVGDL 945
GD+ D GY YF R GD R GEN+ T +E + +Y TE VY V VGD
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGD- 444
Query: 946 DGRAGMIAIVDTSNQV-DLKLLVQGLDA--NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
M A+V D + L A +L P +VR+ + T TFK+ K QL
Sbjct: 445 ---QVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501
Query: 1003 QNEGFD 1008
EG D
Sbjct: 502 SAEGVD 507
|
Length = 529 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 4e-44
Identities = 84/368 (22%), Positives = 146/368 (39%), Gaps = 37/368 (10%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
D +YTSGTTG PK ++ + +L Q + L GDV+ + LP++H GG G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 698 IPALILGSSIAIRTKFS-ASNYFRDCAKYKCNAGIYIGEMCRYLLAS-KESEADYSHQVV 755
+ AL+ G ++ + F ++ +Y+ + + L + ++ D S +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSS--L 118
Query: 756 KMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNAN-LVNMDNTEGAVGIIPTLLPT 811
+++ G + ++ +F +R I+E YG TE + N D+ G + +P
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPG 177
Query: 812 FLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQ 871
V ++ D + P +GE+ P GY +
Sbjct: 178 V--EVRVV-----------DEEGKPL-------PPGEVGELVVRGPWV-MKGYWNNPPET 216
Query: 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931
D ++ +GD+ +DE GYLY R+ D + GENV EVE+ + ++
Sbjct: 217 -----TAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPA 271
Query: 932 YTEFTVYGVKVGDLDGRAGMIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIE 990
E V GV D G + +V + L L L Y P + + +
Sbjct: 272 VAEAAVVGVPDEDR-GERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFVDELP 330
Query: 991 MTGTFKIK 998
T + KI
Sbjct: 331 KTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-35
Identities = 109/526 (20%), Positives = 193/526 (36%), Gaps = 66/526 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ ++A L+D G KGD +A+ N PE V L A++G I A+++ L +
Sbjct: 44 GDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEA 103
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLD--ETKPDLPNLSDLMKTTPAS 626
+ I+ + K +I + + I + D L + ++
Sbjct: 104 VADRIADLGPKVLIADDGTFRNGKEI-ALLEDADAVLSSVVVVPRLGLWYDEAVEKASEK 162
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCL 685
EPL D L +YTSGTTG PK + + L+ K L GD +N
Sbjct: 163 F--EFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSS 220
Query: 686 PMYHSAGGLIGTIPALILGSSIAI---RTKFSASNYFRDCAKYK-----CNAGIYIGEMC 737
G L G++ + R +S + KYK +
Sbjct: 221 DPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFL----- 275
Query: 738 RYLLASKESEADYSHQVVKMIG-VG--MRGDIWAKFVKRFHVQTIIEFYGATE-GNANLV 793
L Y ++++G G + + + F V I++ YG TE G +
Sbjct: 276 -RRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGFIA 333
Query: 794 NM-DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGE 851
G+ G LP + V + + P G L +R + PGM +
Sbjct: 334 GRPPVKNGSSG-----LPLPGYAVRRV----DDEGNPVPPGVGELVVRLPW--PGMALT- 381
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
Y + D + ++ +++ +GD DE GY + R+ D +
Sbjct: 382 ----------Y-WNDPERYKEAYF-------GRWYRTGDWAERDEDGYFWLHGRSDDVIK 423
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLD 971
G+ + +E+E+ + + E V G V D ++A V + V+ L + +
Sbjct: 424 VSGKRIGPLEIESVLLAHPAVAEAAVVG--VPDPGKGQIVLAFVVLAAGVEPNELAEEIR 481
Query: 972 A----NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN---EGFDPS 1010
N+ +A P +R + + T + KI++ L+ +G D S
Sbjct: 482 RHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHKGEDLS 527
|
Length = 528 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 116/519 (22%), Positives = 202/519 (38%), Gaps = 65/519 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE N++A L+ G KKGD +A+ N EY+ + K+G + IN LK +
Sbjct: 35 AELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEE 94
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE------TKPDLPNLSDLMKT 622
+ + ++ + + ++V + + P + AI +P V+ +++ P++ +L+
Sbjct: 95 IAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAA 154
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
+ P + +D+ +YTSGTTG PK ++ + + L L L DV
Sbjct: 155 ASDTFDFP--DIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYL 212
Query: 683 NCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK-----CNAGIYIGEM 736
+PM+H GL AL+ G+ I +F N + I+
Sbjct: 213 VIVPMFHVHAWGL--PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIW---- 266
Query: 737 CRYLLASKES-EADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE----G 788
+ LL + + D+S ++++ G + + +F ++F + +++ YG TE
Sbjct: 267 -QMLLKAPRAYFVDFSS--LRLVIYGGAALPPALLREFKEKFGID-LVQGYGMTETSPVV 322
Query: 789 NANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMI 848
+ P I+ D E P D
Sbjct: 323 SVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDE-LP-PDGGE-------------- 366
Query: 849 IGEIKQSDPSRHFYGY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
+GEI P GY + + + I + +GD+ +DE GYLY DR
Sbjct: 367 VGEIIVRGPW-LMQGYWNRPEATAETID-------GGWLHTGDVGYIDEDGYLYITDRIK 418
Query: 908 DTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI--AIV--DTSNQVDL 963
D GEN+ E+E + + E V GV D + G A+V +D
Sbjct: 419 DVIISGGENIYPRELEDALYGHPAVAEVAVIGVP----DEKWGERPVAVVVLKPGATLDA 474
Query: 964 KLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
K L L L + P + + + T KI K L
Sbjct: 475 KELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVL 513
|
Length = 521 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 122/515 (23%), Positives = 214/515 (41%), Gaps = 58/515 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E N+ A + G +KGD +AL +N PE++ W G AK+G I IN L ++
Sbjct: 41 LELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREE 100
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRE--SIPDVKLFLLDETKPDLPNLSDL--MKTTP 624
+ ++ ++ SA +YP I++ + P + L P +S +K
Sbjct: 101 SAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQ 160
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+ + + PL T D+ ++TSGTT PK ++ ++ + G +L DV
Sbjct: 161 PATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTV 220
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK 744
+P +H + A G++ + K+SA ++ KY+ I M R L+
Sbjct: 221 MPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP 280
Query: 745 ESEADYSHQVVKM-----IGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE 799
S D H + ++ + + F +RF V+ ++ YG TE +V
Sbjct: 281 PSANDRQHCLREVMFYLNLSDQEKDA----FEERFGVR-LLTSYGMTE---TIV------ 326
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP---KTGLC----IRCKYNQ--PGMIIG 850
G +G P R P + G C IR +N+ P IG
Sbjct: 327 GIIGDRPG-------------------DKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIG 367
Query: 851 EIK-QSDPSRH-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGD 908
EI + P + F Y ++ K+LE D + +GD +DE G+ YF DR +
Sbjct: 368 EICIKGVPGKTIFKEYYLDPKATAKVLE-----ADGWLHTGDTGYVDEEGFFYFVDRRCN 422
Query: 909 TYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQ 968
+ GENVS +E+E I+ + + V G+K D +++ + +
Sbjct: 423 MIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFA 482
Query: 969 GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ N+ + P ++ I K + + KI K L+
Sbjct: 483 FCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 111/445 (24%), Positives = 191/445 (42%), Gaps = 53/445 (11%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A T + A + + + ++A+ L+ G K+GDV+AL+ N E+ V+LG G I +
Sbjct: 5 ADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSA 64
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEI-EAIRESIPDVKLFLLDETKPDLPNLSD 618
N + L H + K K I ++ EA +E P V++ +LD + + D
Sbjct: 65 ANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIED 124
Query: 619 LMKTTPASEVK--PSEPLQTSDSLLYI-YTSGTTGLPKAA------IMPNFKVLLGGQVG 669
L++ +E + P+ + D + Y+SGTTGLPK I+ N + G
Sbjct: 125 LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKG 184
Query: 670 KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA 729
S DV+ LP YH+ GL T+ +L+ G+++ I KF + + + KYK +
Sbjct: 185 NP---DSSNDVVLTFLPFYHAY-GLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 730 GIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRG---DIWAKFVKRFHVQTIIEFYG 784
+++ LA + D S +++I G ++ + KRF TI + YG
Sbjct: 241 -LFLVPPIAVALAKSPLVDKYDLSS--LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYG 297
Query: 785 ATEGNANLVNMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841
TE + G+VG L+P I+ D ++ + + LC++
Sbjct: 298 MTETGPATTLTPPGDEKPGSVGR---LVPNVE--AKIVDEDGGKSLG-PNERGELCVK-- 349
Query: 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901
I GY + E+ K+ ++ D + +GD+ DE G Y
Sbjct: 350 ---GPQI------------MKGYLNNPEATKETIDE-----DGWLHTGDIGYFDEDGNFY 389
Query: 902 FKDRTGDTYRWKGENVSTMEVEATI 926
DR + ++KG V E+EA +
Sbjct: 390 IVDRKKELIKYKGYQVPPAELEAVL 414
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-28
Identities = 111/525 (21%), Positives = 190/525 (36%), Gaps = 122/525 (23%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE S++ A LQ G KKGD +ALM N P++ + G K G + +N +
Sbjct: 28 AELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRE 87
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H ++ +K +IV+ + D + + +
Sbjct: 88 LEHQLNDSGAKVLIVAI-----------------------------SFEDALASGAPLPL 118
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAA-------------IMPNFKVLLGGQVGKHLLSL 675
L D + YT GTTG+PK A I K L G+
Sbjct: 119 PV--ELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGE-------- 168
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG- 734
D LP++H G + + L LG++ + F N ++ +Y+ I+ G
Sbjct: 169 ---DRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFT--IFPGV 223
Query: 735 -EMCRYLLASKE-SEADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789
+ LL E + D+S +++ G + ++ +F ++ ++E YG TE +
Sbjct: 224 PTLYNALLNHPEFKKYDFSS--LRLCISGGAPLPVEVAERFEEKTGA-PLVEGYGLTETS 280
Query: 790 ----ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCKY 842
N ++ + G++G+ P+ + +V E + + G L +R
Sbjct: 281 PVTTVNPLDGERKPGSIGL----------PLPGTEVKIVDDEGNELPPGEVGELVVR--- 327
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G + GY ++ E V G + +GD+ MDE GY Y
Sbjct: 328 ---GPQV-----------MKGYWNRPEET----AEVLTDG--WLRTGDIGYMDEDGYFYI 367
Query: 903 KDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK----VGDLDGRAGMI----AI 954
DR D G NV E+E + + V VG D G +
Sbjct: 368 VDRKKDMIIVGGFNVYPREIEEVLYSH--------PAVLEAAVVGVPDPYRGEAVKAFVV 419
Query: 955 VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
+ + + L+ L AY P V + + KI +
Sbjct: 420 LKEGASLTEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKILR 464
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-28
Identities = 114/505 (22%), Positives = 190/505 (37%), Gaps = 90/505 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E +++A +LQ+ G +KGD +AL +N P++V + + G + +N ++
Sbjct: 5 AELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAE 64
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H ++ ++ +IV E L D+
Sbjct: 65 LEHILNDSGARVLIV----------------------GSE-------LDDVA-------- 87
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ YTSGTTGLPK + + VL L V+ LP++
Sbjct: 88 ------------VIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLF 135
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SE 747
H AG + G+++ + T++ R +Y+ I M LLA ++
Sbjct: 136 HVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFAD 195
Query: 748 ADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIP 806
D S +VV G + + + + E YG TE T P
Sbjct: 196 YDLSSLKVVGGGGAALPPAVAERLKALTGLLY-EEGYGLTE----------THTCTHFNP 244
Query: 807 TLLP--TFLH-PVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
P L PV ++ DP+TG + PG GEI P F G
Sbjct: 245 PDRPKPQCLGIPVFGTDARVI------DPETG-----EELPPGE-EGEIVVRGPQV-FKG 291
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
Y ++ E+ + + G ++F +GD+ +DE GY +F DR G V EVE
Sbjct: 292 YWNRPEATAESF--IELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVE 349
Query: 924 ATISKYLPYTEFTVYGVKVGDLDGRAG--MIAIV----DTSNQVDLKLLVQGLDANLPAY 977
A + ++ E V G D R G + A V D +V + +++ + AY
Sbjct: 350 ALLYQHPAVLEVCVIGRP----DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAY 405
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQL 1002
P + + + T + K+ L
Sbjct: 406 KYPRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-24
Identities = 107/447 (23%), Positives = 172/447 (38%), Gaps = 66/447 (14%)
Query: 498 DAA---ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554
DAA A T LE + ++A L G +KGDV+ L+ N E+ V+L G
Sbjct: 26 DAATGRALTYAELERLV----RRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG 81
Query: 555 VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP 614
+ N + + +K I ++ ++ ++ + LLD D
Sbjct: 82 AVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALE----PVVLLDSA-DDGS 136
Query: 615 NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMP--NFKVLLGGQVGKHL 672
D + E P ++ D Y+SGTTG K ++ N + V
Sbjct: 137 AAIDDLLFADEPEP-PVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEG 195
Query: 673 LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-- 730
+ DV LPM+H G + + L LG+++ + +F + KYK
Sbjct: 196 PNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPV 255
Query: 731 ---IYIGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRF-HVQTIIEFY 783
I + L Y +K IG G + ++ F RF V+ + + Y
Sbjct: 256 VPPIVLA------LVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVE-LGQGY 308
Query: 784 GATEGNANLVNMDNTE-----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838
G TE + E G+VG L+P VE + I DP+TG +
Sbjct: 309 GMTESSPVTTMCPVPEKDPKPGSVG---RLVPN------------VEAK-IVDPETGESL 352
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
NQP GE+ P GY + + + + I + D + +GD+ DE
Sbjct: 353 --PPNQP----GELWVRGPQV-MKGYLNNPEATAETIDK------DGWLHTGDLGYFDED 399
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEA 924
GYL+ DR + ++KG V+ E+EA
Sbjct: 400 GYLFIVDRLKELIKYKGFQVAPAELEA 426
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ + ++N+ A L+ G KKGDV+AL+ ENRPEY+ WL AKLG ++ALINT + +
Sbjct: 7 AEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQRGEV 66
Query: 569 LVHSISTVKSKAIIVSALYY 588
L H I+ ++A+IV +Y
Sbjct: 67 LAHCINVSDARAVIVDPAFY 86
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-23
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 9/224 (4%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++D N++A L D G KKGD +A + N Y +WL A+ G + +N L +
Sbjct: 40 AELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEE 99
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP-----NLSDLMKTT 623
L + + ++A +V P EA +P L L + +D +
Sbjct: 100 LAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAG 159
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK-HLLSLGSGDVIY 682
+E P L D +YTSGT LPK A++ + + L+ V + + D+
Sbjct: 160 SVAE--PDVELADDDLAQILYTSGTESLPKGAMLTH-RALIAEYVSCIVAGDMSADDIPL 216
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
+ LP+YH A + P L +G++ I R +
Sbjct: 217 HALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAER 260
|
Length = 523 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 48/380 (12%)
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
D L ++TSGTTG PK + + +L + L D N +P++H G ++
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS 61
Query: 697 TIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVK 756
+ L+ G S+ KFSAS ++ D AKY+ + + + LL + + ++
Sbjct: 62 LLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLR 121
Query: 757 MI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL-VNMDNTE----GAVGIIPTL 808
I + + + KRF V ++E YG TE + N G+VG P
Sbjct: 122 FIRSASAPLPPAVLDRLEKRFGVP-VLEAYGMTEAAHQIASNPLPPLVRKPGSVG-RPA- 178
Query: 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868
V + I D P GEI P+ GY +
Sbjct: 179 ------GVEVA---------ILDDDGRP-------LPPGQEGEIVIRGPNV-TAGYLNNP 215
Query: 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK 928
E+ ++ D +F +GD+ +DE GYL+ R + GE +S EVE + +
Sbjct: 216 EANREAFR------DGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLR 269
Query: 929 YLPY-TEFTVYGV---KVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVR 984
P E V+GV G+ A ++ D+ V ++ L L A+ P +
Sbjct: 270 -HPAVAEAVVFGVPDELYGEEVA-AAVVLRADSK--VTIEELRDFARKRLAAFKVPKKIL 325
Query: 985 IMKAIEMTGTFKIKKIQLQN 1004
+ A+ T KI++ +L
Sbjct: 326 FVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-23
Identities = 121/518 (23%), Positives = 186/518 (35%), Gaps = 114/518 (22%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ + SN++A L++ G ++GD + + PE L KLG +S ++
Sbjct: 10 GQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGPDA 69
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ H + ++ ++ D PA
Sbjct: 70 VEHRLRDSGARVLVTDG-------------------------SD----------DPA--- 91
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG---GQVGKHLLSLGSGDVIYNCL 685
+ IYTSGTTG PK A+ + +VLLG G L+ GDV +
Sbjct: 92 ------------ILIYTSGTTGPPKGALHGH-RVLLGHLPGVELYFELAPRPGDVFWT-- 136
Query: 686 PM-YHSAGGLIGTI-PALILGSSI-AIR-TKFSASNYFRDCAKYKCNAGIYIGEMCRYLL 741
P + GGL+ + PAL G + A R +F F +Y + +
Sbjct: 137 PADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMR 196
Query: 742 ASKESEADY--SHQVVKMIG--VGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN--- 794
A Y + V G +G WA+ + T+ EFYG TE N + N
Sbjct: 197 RVGSERARYDLRLRAVASGGESLGEELLEWAR--DELGL-TVNEFYGQTEANLVVGNCAA 253
Query: 795 -MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI- 852
G++G P H VA++ D P +GEI
Sbjct: 254 LGPARPGSMG-----KPVPGHEVAVV-----------DDAGRP-------VPPGEVGEIA 290
Query: 853 -KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
K+ DP F GY + E+ K + L+GD+ D GYL+FK R D +
Sbjct: 291 VKRPDPVM-FLGYWNNPEATAA------KFAGDWLLTGDLGRRDADGYLWFKGRADDVIK 343
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA---IVDTSNQVDLKLLVQ 968
G + E+E + K+ E V GV D G I +V L
Sbjct: 344 SSGYRIGPAEIEECLLKHPAVLEAAVVGVP----DPERGEIVKAFVVLAEGVEPSDELAT 399
Query: 969 GLD----ANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L + L A+ P + + + MT T KI++ +L
Sbjct: 400 ELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRREL 437
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-23
Identities = 118/520 (22%), Positives = 200/520 (38%), Gaps = 63/520 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ + A L G KGD +A+ N P +V LGA K G + +NT
Sbjct: 34 AELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADE 93
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT-----T 623
+ ++ +KA+ V L+ + +P ++ ++ ET+ D P ++ MKT
Sbjct: 94 AAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP-HTEKMKTFTDFLA 152
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
+ + + D ++TSGTTG PK A++ + ++L L L GD
Sbjct: 153 AGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLA 212
Query: 684 CLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG--EMCRYLL 741
P +H G G L+ G++I F FR + + G M LL
Sbjct: 213 ANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETER--ITVLPGPPTMYNSLL 270
Query: 742 AS-KESEADYSHQVVKMIGVGMRG--DIWAKFVKRFH----VQTIIEFYGATEGNANLVN 794
S D S + + + G + ++RF V ++ YG +E + +
Sbjct: 271 QHPDRSAEDLSS-----LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASG-VTT 324
Query: 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVEN-------QPIRDPKTG-LCIRCKYNQPG 846
+ + + + T AI VEN + + + G L +R N
Sbjct: 325 FNRLDDDRKTVAGTIGT-----AI---AGVENKIVNELGEEVPVGEVGELLVR-GPNV-- 373
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
M GY D E+ ++ D + +GD+ +DE GYLY DR
Sbjct: 374 MK--------------GYYDDPEATAAAID-----ADGWLHTGDLGRLDEEGYLYIVDRK 414
Query: 907 GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKL 965
D + G NV EVE + ++ E V GV L G G +V ++ +
Sbjct: 415 KDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERL-GEVGKAYVVLKPGAELTEEE 473
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L+ +L Y P + + + T K+ K L+ +
Sbjct: 474 LIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 114/497 (22%), Positives = 178/497 (35%), Gaps = 125/497 (25%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D S ++A+ L G GD +A++ EYV ++L + G ++ +N +
Sbjct: 15 GELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPS----- 69
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
YP E I LSD
Sbjct: 70 -------------------YPAAEL--AYI-----------------LSD---------- 81
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMP------NFKVLLGGQVGKHLLSLGSGDVIY 682
S+P D L IYTSGTTG PK ++ N + L+ + DV+
Sbjct: 82 --SQPSLLVDPALIIYTSGTTGRPKGVVLTHGNLAANARALV------EAWRWTASDVLL 133
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY--L 740
+ LP++H G L G+S+ +F RD + +++G Y L
Sbjct: 134 HALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQE--RDALRLLPRITVFMGVPTIYTRL 191
Query: 741 LASKESEADYSHQVVKMIGVGMR----G------DIWAKFVKRFHVQTIIEFYGATEGNA 790
L E +R G + ++ +R T++E YG TE
Sbjct: 192 LEHYE-----FDDAAAAAARNLRLFVSGSAALPVPVLERWEERTG-HTLLERYGMTETGM 245
Query: 791 NLVNMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
L N + E G VG+ LP VE + I D G + + G
Sbjct: 246 ALSNPLDGERRPGTVGLP---LPG------------VEVR-IVDEDGGEPL--AAGEVGE 287
Query: 848 IIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
I +++ P+ F Y +K E+ + F D +F +GD+ V+DE GY R
Sbjct: 288 I--QVR--GPNV-FSEYWNKPEATAE----AFTE-DGWFKTGDVGVVDEDGYYRILGRKS 337
Query: 908 -DTYRWKGENVSTMEVEATISKYLPY-TEFTVYGVKVGDLDGRAGMIAIVDTSN--QVDL 963
D + G VS +E+E + + P E V GV D D ++A+V + L
Sbjct: 338 DDIIKSGGYKVSALEIEEALLE-HPGVAEVAVIGVP--DPDWGEAVVAVVVPEAGAALTL 394
Query: 964 KLLVQGLDANLPAYARP 980
L L Y P
Sbjct: 395 AELRAWAREKLAPYKIP 411
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 91/373 (24%), Positives = 143/373 (38%), Gaps = 37/373 (9%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
D L YTSGTTG PK A++ + VL G L L GD +P++H G ++G
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGV 62
Query: 698 IPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-ASKESEADYSHQVVK 756
+ +L G+++ + KF R + + A + M LL + D S
Sbjct: 63 LASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRTG 122
Query: 757 MIGVGMRGDIWAKFVK-RFHVQTIIEFYGATEGNANL---VNMDNTE---GAVGIIPTLL 809
+ G + ++ F + I YG TE + D E G VG
Sbjct: 123 ISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG------ 176
Query: 810 PTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE 869
P+ ++ I DP G PG +GEI S GY + E
Sbjct: 177 ----RPLPGVEVK------IVDPDGGEV------PPGE-VGEICVRGYSV-MKGYYNDPE 218
Query: 870 SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929
+ + ++ D + +GD+ MDE GYL R D GEN+ E+E + +
Sbjct: 219 ATAEAID-----ADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTH 273
Query: 930 LPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAI 989
E V GV L ++ + + L+ L + P +VR + +
Sbjct: 274 PAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPRYVRFVDEL 333
Query: 990 EMTGTFKIKKIQL 1002
T + KI+K +L
Sbjct: 334 PRTASGKIQKFKL 346
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 115/450 (25%), Positives = 182/450 (40%), Gaps = 62/450 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE SN +AR L G + GD +A++ N +V A K+G L+NT
Sbjct: 78 AELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQ 137
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFL-----LDETKPDLPNLSDLM-KT 622
L + KA++ + + A+ + ++ + + + L DL+ +
Sbjct: 138 LAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGS 197
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS---LGSGD 679
+ A KP +P + I TSGTTG PK A P L LLS +G+
Sbjct: 198 STAPLPKPPKP-----GGIVILTSGTTGTPKGAPRPEPSPL---APLAGLLSRVPFRAGE 249
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
PM+H+ G T+ A+ LGS++ +R +F D AK+K A + + M
Sbjct: 250 TTLLPAPMFHATGWAHLTL-AMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308
Query: 740 LLA-SKESEADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATE-GNANLVN 794
+L E A Y +K+I G + ++ + ++ F + YG+TE A +
Sbjct: 309 ILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATIAT 367
Query: 795 MDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVEN-QPIRDPKTGLCIRCKYNQPGMIIG 850
++ G VG P + V I D EN + P ++G
Sbjct: 368 PEDLAEAPGTVGRPPKGV-----TVKI--LD--ENGNEV---------------PRGVVG 403
Query: 851 EIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTY 910
I + F GY D + ++ I D SGD+ DE G L+ R D
Sbjct: 404 RIFVGN-GFPFEGYTDGR-DKQII--------DGLLSSGDVGYFDEDGLLFVDGRDDDMI 453
Query: 911 RWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GENV EVE ++ + E V GV
Sbjct: 454 VSGGENVFPAEVEDLLAGHPDVVEAAVIGV 483
|
Length = 549 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 96/447 (21%), Positives = 156/447 (34%), Gaps = 102/447 (22%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E S++ A L+D G +GD +A++ PE V LG KLG + T L +
Sbjct: 4 AELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPKD 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + + ++AI+ SA
Sbjct: 64 IRYRLERAGARAIVTSA------------------------------------------- 80
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVIYNCLP- 686
D L +TSGTTGLPK + + LG V G + L L D+ +
Sbjct: 81 --------DDPALLYFTSGTTGLPKMVLHTH-SYPLGHLVTGAYWLDLRPDDLHWTIADP 131
Query: 687 --MYHSAGGLIGTIPALILGSSIAIR--TKFSASNYFRDCAKYKCNAGIYIGEMC----- 737
+ L +LG+++ + +F A +Y + C
Sbjct: 132 GWAKGAWSSLFA---PWLLGAAVFVYHGRRFDAERTLELLERYG------VTTFCAPPTA 182
Query: 738 -RYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
R LL S D+SH + V G + ++ + + I + YG TE + N
Sbjct: 183 YRMLLQQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGL-PIRDGYGQTETGLLVANF 241
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855
E G + P + VAII + E + G I +K
Sbjct: 242 PGMEVKPGSMGRPAPG--YRVAIIDDEGNE--------------LPPGEEGDIAVRVKPR 285
Query: 856 DPS--RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
P R + +K E+ ++L+GD + DE GY +F R D +
Sbjct: 286 PPGLFRGYLKDPEKTEATI---------RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSS 336
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGV 940
G + EVE+ + ++ E V G
Sbjct: 337 GYRIGPFEVESALIEHPAVAEAAVVGS 363
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 8e-22
Identities = 73/302 (24%), Positives = 119/302 (39%), Gaps = 43/302 (14%)
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
D L +YTSGTTG PK ++ + +L + L GDV P+YH+AGGL
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGL-F 59
Query: 697 TIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSHQVV 755
+PAL G ++ + KF +++ + M + LL + + D S +
Sbjct: 60 LLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSS--L 117
Query: 756 KMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE-----GAVGIIPT 807
++I G M ++ ++ F ++ YG TE + + G+VG
Sbjct: 118 RLIIYGAAPMPAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLGSVGR--- 173
Query: 808 LLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867
P V I+ D PG +GEI P+ +
Sbjct: 174 --PVPGVEVRIV-----------DEDGREL------PPGE-VGEIVVRGPAVMAGYWNRP 213
Query: 868 KESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATIS 927
+ + + + G + +GD+ +DE GYLY DR D GEN+ EVE +
Sbjct: 214 EATAE-----ALRDG--WLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLL 266
Query: 928 KY 929
+
Sbjct: 267 AH 268
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 1e-21
Identities = 100/522 (19%), Positives = 170/522 (32%), Gaps = 110/522 (21%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D +++A L G GD + + N E+V ++ KLG I L +
Sbjct: 44 RELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHE 103
Query: 569 LVHSISTVKSKAIIV-----SALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
+ H ++KA I+ Y + E +PDV LF L
Sbjct: 104 IGHFARQSEAKAYIIADRFSGFDYAALARELLEELPDVALFQL----------------- 146
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPN------FKVLLGGQVGKHLLSLGS 677
+ GTTGLPK +P + + L
Sbjct: 147 ---------------------SGGTTGLPKL--IPRTHNDYLYSARASAEACG----LDP 179
Query: 678 GDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEM 736
G V LP H+ G + AL+ G ++ + S F + K + +
Sbjct: 180 GTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPAL 239
Query: 737 CRYLLASKE-SEADYSHQVVKMIGVGMRGDIWAKF----VKRFHVQ---TIIEFYGATEG 788
L + E +AD S +++I VG A +R + + + +G EG
Sbjct: 240 LNLWLEAAEWDQADLSS--LRVIQVGG-----APLSPELARRVEERLGCPLQQVFGMAEG 292
Query: 789 NANLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCK 841
N +D+ G P + +V + +P+ + G L R
Sbjct: 293 LVNYTRLDDPPDVIMRTQG-----RPISPA----DEIRIVDDQGEPVPPGEVGELLTRGP 343
Query: 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901
Y GY E + F D ++ +GD++ +D GY
Sbjct: 344 YT-----------------IRGYYRAPEHNAR----AFTD-DGFYRTGDLVRIDADGYYR 381
Query: 902 FKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV 961
R D GE +S E+E + + + V G+ L R +
Sbjct: 382 VVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAP 441
Query: 962 DLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L L L L + P + ++ ++ +T K+ K L
Sbjct: 442 TLAELRAFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 3e-20
Identities = 111/523 (21%), Positives = 195/523 (37%), Gaps = 64/523 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ +++A L G ++GD +A+ N E+V ++L A+LG +NT +
Sbjct: 39 AELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHE 98
Query: 569 LVHSISTVKSKAIIVSA----LYYPEI--EAIRESIPDVK-LFLLDETKPDLPN------ 615
+ H + +++ ++V + + I +++P ++ + ++D+ P
Sbjct: 99 VAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGAR 158
Query: 616 --LSDL--MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH 671
L L A+ + ++P L TSGTT PK + +L +
Sbjct: 159 VQLFALPDPAPPAAAGERAADP---DAGALLFTTSGTTSGPKLVLHRQATLLRHARAIAR 215
Query: 672 LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGI 731
G V+ LP G + AL G+ + F A+ R +++
Sbjct: 216 AYGYDPGAVLLAALPFC-GVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTF 274
Query: 732 YIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ--TIIEFYGATEGN 789
EM R +L + AD+ ++ G + + + YG++E
Sbjct: 275 GNDEMLRRILDTAGERADFPS--ARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQ 332
Query: 790 A--NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPG 846
A L + +V I P P A ++ RDP+ G L G
Sbjct: 333 ALVALQPATDPV-SVRIEGGGRP--ASPEARVR--------ARDPQDGALL------PDG 375
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
GEI+ PS GY D ++ + L + D YF +GD+ G ++ R
Sbjct: 376 E-SGEIEIRAPSL-MRGYLDNPDATARALTD-----DGYFRTGDLGYTRGDGQFVYQTRM 428
Query: 907 GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV--GDLDGRAGMIAIV--DTSNQVD 962
GD+ R G V+ E+E + + LP V +V DG+ +A V D
Sbjct: 429 GDSLRLGGFLVNPAEIEHAL-EALP----GVAAAQVVGATRDGKTVPVAFVIPTDGASPD 483
Query: 963 LKLLVQGLDANLPAY---ARPLFVRIMKAIEMTGTFKIKKIQL 1002
L+ L + AR V E KI+K +L
Sbjct: 484 EAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRL 526
|
Length = 540 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 4e-20
Identities = 107/441 (24%), Positives = 172/441 (39%), Gaps = 51/441 (11%)
Query: 514 YSNKIARI------LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
YS AR+ L G + +A++ N + V L +LG + AL+N LK
Sbjct: 31 YSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLKPA 90
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
+ I + A ++ A+ ++AI +S V++ L DL L + P E
Sbjct: 91 EIAELIKRGEMTAAVI-AVDAQVMDAIFQSGSGVRVLALG----DLVGLGEPESAGPPIE 145
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPN----FKVL-LGGQVGKHLLSLGSGDVIY 682
P EP Q + YTSGTTGLPK A++P +VL + Q G L G +V+
Sbjct: 146 DPPREPEQPA---FVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAG---LRHGRHNVVL 199
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+P+YH G + AL L + + +F ++ + + + + L A
Sbjct: 200 GLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAA 259
Query: 743 SKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG 800
+ E S + V G M D + V + + YG TE +L D G
Sbjct: 260 AAEGAPLKLDSLEHVTFAGATMP-DAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRTG 318
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
+ P F V I++ P L P GE+ +
Sbjct: 319 TE-----MRPGFFSEVRIVRI-------GGSPDEAL--------PNGEEGELVVAAADAT 358
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY ++ ++ + K D ++ + D+ V+D G + R D GEN+
Sbjct: 359 FTGYLNQPQATAE------KLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPS 412
Query: 921 EVEATISKYLPYTEFTVYGVK 941
EVE + + TE V G+
Sbjct: 413 EVERVLGRAPGVTEVVVIGLP 433
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 6e-20
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 95 ILLTLPRDVNIIYSLSRAILGTKRMAA-TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIK 153
+ LPR + + + R + T + + +L F+++ R P+ P F+D++ +
Sbjct: 7 LAARLPRRLPDLPGILRGLKRTALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYA 66
Query: 154 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLL 213
+++ +N+ A G KGDV+AL+ ENRPEY+ WLG AKLG + L N Q
Sbjct: 67 ELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNT----QQR 122
Query: 214 GKKMVH 219
G + H
Sbjct: 123 GAVLAH 128
|
Length = 600 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 8e-20
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 59/313 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++ SN++A L+ G ++GDV+A++ EN PE+ V+ A + G+ IN +L
Sbjct: 15 GELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAE 74
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLD-ETKP---DLPNLSDLMKTT 623
+ + + +K +IVSA + +P V L L+ P T
Sbjct: 75 IAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPDT 134
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV----GKHLLSLGSG- 678
P ++ + Y+SGTTG PK P L G G L LG G
Sbjct: 135 PIADETAGADML--------YSSGTTGRPKGIKRP----LPGLDPDEAPGMMLALLGFGM 182
Query: 679 ----DVIY-NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
D +Y + P+YH+A G AL LG ++ + KF A +Y+ +
Sbjct: 183 YGGPDSVYLSPAPLYHTAPLRFGMS-ALALGGTVVVMEKFDAEEALALIERYRVTHSQLV 241
Query: 734 GEMCRYLLA-SKESEADY---SHQVV-------------KMIGVGMRGDIWAKFVKRFHV 776
M +L +E A Y S +V MI D W
Sbjct: 242 PTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMI------DWWGP------- 288
Query: 777 QTIIEFYGATEGN 789
I E+Y ++EG
Sbjct: 289 -IIHEYYASSEGG 300
|
Length = 502 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-19
Identities = 104/514 (20%), Positives = 207/514 (40%), Gaps = 62/514 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E N+ L++ G ++ + + L+ + PE+ + GA K+G + INT L
Sbjct: 34 GELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDD 93
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLDETKPDLPNLSDLMKTTPASE 627
+ ++ +++ +++S + ++ + P ++ + ++ P + + L+ T A+E
Sbjct: 94 YRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIAT--AAE 151
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAI-----MPNFKVLLGGQVGKHLLSLGSGDVIY 682
+ D ++Y+SG+TG PK + M V L + DV++
Sbjct: 152 ELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNV----LGITEDDVVF 207
Query: 683 NCLPMYHSAG---GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
+ ++ + G GL P + +++ + + + F +YK ++ G Y
Sbjct: 208 SAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK--PTVFFGVPTLY 263
Query: 740 --LLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
+LA+ E + + G + +I ++ + F + I++ G+TE + +
Sbjct: 264 AAMLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGL-EILDGIGSTE--MLHIFL 320
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855
N GAV T PV + LV D IGE+
Sbjct: 321 SNRPGAVK-----YGTSGKPVPGYEVKLV------DEDGEEV-------ADGEIGELWVR 362
Query: 856 DPS--RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
S ++ +K +++ + + GDKY+ DE GY ++ R+ D +
Sbjct: 363 GDSSAAGYWNRREK--TRETFVGEWTRTGDKYY-------RDEDGYYWYCGRSDDMLKVS 413
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV--DTSNQVDLKL---LVQ 968
G VS EVE + ++ E V G + D DG A V Q +L L
Sbjct: 414 GIWVSPFEVEDALLQHPAVLEAAVVGAE--DEDGLTKPKAFVVLKDGYQPSPELETELKD 471
Query: 969 GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ L Y P ++ + + T T KI++ +L
Sbjct: 472 FVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKL 505
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-19
Identities = 77/333 (23%), Positives = 134/333 (40%), Gaps = 39/333 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++E +N++A L G GD + + NR EYV LGA K + +N +
Sbjct: 32 AELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLS---DLMKTT 623
L + + + A++ + P + + +P ++ ++ D + DL + +
Sbjct: 92 LRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAA 151
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM----PNFKVLLGGQV---GKHLLSL- 675
+ E E + D L +YT GTTG+PK +M F+VLLGG+ G+ +
Sbjct: 152 GSPERDFGER--SPDDLYLLYTGGTTGMPK-GVMWRQEDIFRVLLGGRDFATGEPIEDEE 208
Query: 676 --------GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRDCAKY 725
G G + P+ H G AL G ++ + +F A +R +
Sbjct: 209 ELAKRAAAGPGMRRFPAPPLMH-GAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIERE 267
Query: 726 KCNAGIYIGE-MCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK-RFHVQ----TI 779
K N +G+ M R LL + E+ Y + I G G +++ VK +
Sbjct: 268 KVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASG--GALFSPSVKEALLELLPNVVL 325
Query: 780 IEFYGATEGNANLVNMDNTEGAVGIIPTLLPTF 812
+ G++E A G + T P F
Sbjct: 326 TDSIGSSETGFGGSGT----VAKGAVHTGGPRF 354
|
Length = 533 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 7e-19
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNV 206
D WT ++++EYSNK+A Q G++ GDV+AL ENR E+V +WLG AK+GV + L N
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALIN- 59
Query: 207 VWLAQLLGKKMVH------FKGIILELHRLMKLNKE 236
+ L + ++H K +I L +
Sbjct: 60 ---SNLRLESLLHCITVSKAKALIFNLLDPLLTQSS 92
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-18
Identities = 117/524 (22%), Positives = 202/524 (38%), Gaps = 98/524 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++D ++A +L+ G G+ LA++ N V + A++G I +N L
Sbjct: 26 AELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL---- 81
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET----KPDLPNLSDLMKTTP 624
SA E++A+ + + +L L D+ + D+ +L+ + +
Sbjct: 82 ---------------SA---SELDALLQD-AEPRLLLGDDAVAAGRTDVEDLAAFIASAD 122
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMP---------NFKVLLGGQVGKHLLSL 675
A E + + L ++TSGT+G PK ++ NF VL G+V H L
Sbjct: 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVL--GRVDAHSSFL 180
Query: 676 GSGDVIYNCLPMYHSAGGLIGTI-PALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG 734
PM+H GLI ++ P L +G SI + F Y
Sbjct: 181 CDA-------PMFHII-GLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFC 232
Query: 735 --EMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGN 789
+M + A +A + + G DI + ++ +G +E
Sbjct: 233 VPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPM---VDGFGMSEAG 289
Query: 790 ------ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843
+ + GA GI P +Q +V++Q D C
Sbjct: 290 TVFGMSVDCDVIRAKAGAAGI----------PTPTVQTRVVDDQG-ND--------CPAG 330
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
P GE+ P+ GY + ++ + GD +F +GD+ D G+ +
Sbjct: 331 VP----GELLLRGPNL-SPGYWRRPQATARAFT-----GDGWFRTGDIARRDADGFFWVV 380
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD---GRAGMIAIV-DTSN 959
DR D + GENV E+EA ++ + E V G+ D G G +AIV
Sbjct: 381 DRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMA----DAQWGEVGYLAIVPADGA 436
Query: 960 QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+DL+ + L L Y P +R++ A+ T + K++K +L+
Sbjct: 437 PLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480
|
Length = 488 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-18
Identities = 102/497 (20%), Positives = 204/497 (41%), Gaps = 55/497 (11%)
Query: 519 ARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKS 578
+R+++ K+G+ + +M + L G + ++N ++ L +
Sbjct: 21 SRLIKKLT-KEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGI 79
Query: 579 KAIIVSALYYP--EIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT------TPASEVKP 630
K +I S + ++E + + V++ L++ + + + +D +K PA
Sbjct: 80 KTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKI-SKADKLKAFLAAKLPPALLRLF 138
Query: 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHS 690
+ D + ++TSG+ GLPK ++ + +L ++ L + DV+ LP++H+
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHA 198
Query: 691 AGGLIGTIPALILGSSIAIRTKFSASNYFRDCAK--YKCNAGIYIGE--MCRYLLASKES 746
G + + L+ G + + + + A+ A I G R +
Sbjct: 199 FGLTVTLLLPLLTGLRVV--YYPNPLDA-KKIAELIRDYKATILCGTPTFLRGYARNAHP 255
Query: 747 EADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANL-VN--MDNTEG 800
E S ++++ G + F ++F ++ I+E YGATE + + VN M N G
Sbjct: 256 EDFSS---LRLVVAGAEKLPEATRELFEEKFGIR-ILEGYGATECSPVISVNTPMGNKPG 311
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
VG P+ I+ +V P+T + G+++ ++ P+
Sbjct: 312 TVG----------RPLPGIEVRIV------SPETH--EELPIGEGGLLL--VR--GPNV- 348
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
GY + +E + V GD ++ +GD+ +DE G+L R + GE VS
Sbjct: 349 MSGYLNNEEKTSE----VEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLT 404
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARP 980
VE +S+ LP + V+V D ++ + T + +L +A LP A P
Sbjct: 405 AVEELLSEILPE-DSLHAAVEVPDEKKGEKIVLLTTTEDLDPEELNAILREAGLPNLAVP 463
Query: 981 LFVRIMKAIEMTGTFKI 997
+ + I + G+ K
Sbjct: 464 RKILHVDEIPLLGSGKT 480
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 119/542 (21%), Positives = 212/542 (39%), Gaps = 90/542 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE S++ A +L+ G GD +A+ N P++ V+ G KLG + ++ ++
Sbjct: 62 AELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHE 121
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRE-----------------SIPDVKL-FLLDETK 610
L + ++ ++ ++ P +E +R + P + L L +
Sbjct: 122 LSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181
Query: 611 PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVG 669
DL+ A P D+L + YT GTTG+PK + ++
Sbjct: 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQ-RDMVYTAAA 240
Query: 670 KHLLSL--GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727
+ +++ G V + LP + AG G + L G+++ + ++ A + +Y+
Sbjct: 241 AYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRV 300
Query: 728 NAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK--------RFHVQT- 778
+ + + L+ A+Y ++ + V FVK R+ T
Sbjct: 301 TRTVMLVDNAVELMDHPRF-AEYDLSSLRQVRV-------VSFVKKLNPDYRQRWRALTG 352
Query: 779 --IIEF-YGATEGN-ANLVNMDNTEGAVGIIPTLL--PTFLH-PVA-----IIQFDLVEN 826
+ E +G TE + + T G LL P F+ PV I F+ E
Sbjct: 353 SVLAEAAWGMTETHTCDTF----TAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL 408
Query: 827 QPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYF 886
P+ GEI PS GY +K E+ + L D +
Sbjct: 409 LPLGAE-----------------GEIVVRTPSL-LKGYWNKPEATAEALR------DGWL 444
Query: 887 LSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV-GDL 945
+GD+ +DE G+L++ R + + G +V EVEA + ++ P V G V G
Sbjct: 445 HTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQH-P----AVLGSAVVGRP 499
Query: 946 DGRAGMIAI----VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001
D G + + + + L N+ Y P +RI+ A+ MT T K++K
Sbjct: 500 DPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQD 558
Query: 1002 LQ 1003
LQ
Sbjct: 559 LQ 560
|
Length = 567 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 7e-18
Identities = 110/507 (21%), Positives = 206/507 (40%), Gaps = 59/507 (11%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ EY +K+A L + KKG+ +A++ +N EY+ + AK+ I+ +N L +
Sbjct: 32 QLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+ + + + V + ++++ ++ + +L ++ + V
Sbjct: 92 LIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT-------SLKEIEDRKIDNFV 144
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ +E S S + YTSGTTG PK A++ + + L D LP++
Sbjct: 145 EKNE----SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLF 200
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-ASKESE 747
H G + P L G I + KF + K+K + + + + L+ SK
Sbjct: 201 HIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFET 260
Query: 748 ADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGA--- 801
+ V+ G ++ +F+ R + + +G TE + V M + E A
Sbjct: 261 TNLQS--VRWFYNGGAPCPEELMREFIDRGFL--FGQGFGMTE-TSPTVFMLSEEDARRK 315
Query: 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHF 861
VG I PV ++L+ D K +GE+ P+
Sbjct: 316 VGSIG-------KPVLFCDYELI------DENKN-----KVEVGE--VGELLIRGPNV-M 354
Query: 862 YGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTME 921
Y ++ ++ ++ ++ D + +GD+ +DE G++Y R + GEN+ +E
Sbjct: 355 KEYWNRPDATEETIQ------DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLE 408
Query: 922 VEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV----DTSNQVDLKLLVQGLDANLPAY 977
VE I+K E V G + + G I I +S+ + K +++ L Y
Sbjct: 409 VEQVINKLSDVYEVAVVGRQ----HVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKY 464
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
P + +K + T KI+K QL N
Sbjct: 465 KIPKEIVFLKELPKNATGKIQKAQLVN 491
|
Length = 496 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-17
Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 70/386 (18%)
Query: 643 IYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAG-GLIGTIPAL 701
IYTSG+TG PK ++ + + G + L L D I LP G + T A
Sbjct: 8 IYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLT--AF 65
Query: 702 ILGSSIAIRTKFS-ASNYFRDCAKYKCN--AG---IYIGEMCRYLLASKESEADYSHQVV 755
+G ++ + ++F+ + + AK + AG + L + A +
Sbjct: 66 RVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWA------QLLRLDPLAREDFPSL 119
Query: 756 KMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTF 812
+ + G + + + F + YG TE + T+
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRS-------------------TY 160
Query: 813 LHPVAIIQFDLVENQP-------------IRDPKTGLCIRCKYNQPGMII---GEIKQSD 856
L P + ++ +P + D RC + G ++ + +
Sbjct: 161 LPP------EELDRRPDSIGKAIPNVELWVVDEDGN---RCAPGEVGELVHRGANVMK-- 209
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
GY + E+ + L PG+ +GD++ MDE GYLYF R D + +G
Sbjct: 210 ------GYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYR 263
Query: 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPA 976
VS E+E I + E V GV L + + +D K L++ +LP
Sbjct: 264 VSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPN 323
Query: 977 YARPLFVRIMKAIEMTGTFKIKKIQL 1002
Y P + + ++ K+ + L
Sbjct: 324 YMVPAEIVFVDSLPKNANGKVDRSAL 349
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-16
Identities = 114/529 (21%), Positives = 194/529 (36%), Gaps = 77/529 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +YSNK A + G KGD + L + R E+ L K+G I+ L +
Sbjct: 51 GDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKD 110
Query: 569 LVHSISTVKSKAIIVSA--LYYPEIEAIRESIP-DVKLFLLDETKPD-LPNLSDLMKTTP 624
+V+ I K I+ I+ L L+ + P+ + ++
Sbjct: 111 IVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENAS 170
Query: 625 ASEVKPSEPLQTS--DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVI 681
+P+ T D LL +TSGTTG+PK + + LG V K+ ++ G +
Sbjct: 171 PDFERPTGNDATCNDDILLVYFTSGTTGMPKM-VEHDHTYPLGHIVTAKYWQNVKEGGLH 229
Query: 682 YN--------CLPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRDCAKYKCNAGI 731
+ G L G I G+++ + KF N KY
Sbjct: 230 LTVADTGWGKAV-----WGKLYGQ---WIAGAAVFVYDYDKFDPKNLLEKIEKYG----- 276
Query: 732 YIGEMC------RYLLASKESEADYS---HQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF 782
+ C R+L+ S+ D S + G + +++ F K ++E
Sbjct: 277 -VTTFCAPPTIYRFLIKEDLSKYDLSSLRYCTTA--GEPLNPEVFNTF-KEKTGIKLMEG 332
Query: 783 YGATEGN---ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839
+G TE A M+ G++G P+ + + II D
Sbjct: 333 FGQTETTLTIATFPWMEPKPGSMG-----KPSPGYDIDIIDPDGKS-------------- 373
Query: 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
C+ + G I+ P F GY E ++ D Y+ +GD MDE GY
Sbjct: 374 CEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH------DGYYHTGDTAWMDEDGY 427
Query: 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN 959
L+F R D + G + EVE+ + ++ E V GV + G+ IV T
Sbjct: 428 LWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVP-DPIRGQVVKATIVLTKG 486
Query: 960 QVDLKLLVQGLD----ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
+ L + L Y P + + + T + KI++++++
Sbjct: 487 YEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-16
Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 26/372 (6%)
Query: 674 SLGSGDVIYNCL-PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIY 732
+L D +Y CL P++H +G L+ A++ GS IA+ + ++ +Y Y
Sbjct: 642 ALDRRDTVY-CLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSY 700
Query: 733 IGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792
M R ++ +H V IG GM +W + V+ F ++EF+ T+G A L
Sbjct: 701 TWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVL 760
Query: 793 VNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852
N+ + +G LP V + +D + I + G R + N+ G+++
Sbjct: 761 ANVSGAK--IGSKGRPLPG-AGRVELAAYDPEHDL-ILEDDRGFVRRAEVNEVGVLLARA 816
Query: 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
+ G D S K+ VF P D + + + D+ G + DR G R
Sbjct: 817 R---------GPIDPTASVKR---GVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRT 864
Query: 913 KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD--TSNQVDLKLLVQGL 970
V T V + + YGV+VG GR +A V + L + L
Sbjct: 865 ARGPVYTEPVTDALGRIGGVDLAVTYGVEVG---GRQLAVAAVTLRPGAAITAADLTEAL 921
Query: 971 DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYV-RQGSEFVRMTP 1029
A+LP P V ++ I ++ T++ L+ G P Y + + + R+TP
Sbjct: 922 -ASLPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI-PKPGRQAWYFDPETNRYRRLTP 979
Query: 1030 NTYEKIMNDQPG 1041
++
Sbjct: 980 AVRAELTGGHRR 991
|
Length = 994 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-16
Identities = 110/516 (21%), Positives = 198/516 (38%), Gaps = 99/516 (19%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E S ++A +L D G K GD +A + PE V L ++G I + T +
Sbjct: 4 AELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGPKA 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + + +K ++ +A A R + D
Sbjct: 64 IEYRLGHSGAKVVVTNA-------ANRGKLDD---------------------------- 88
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
D +YTSGTTGLPK +P + ++ + L DV +N
Sbjct: 89 ---------DLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIADPG 139
Query: 689 HSAGGLIGTIPALILG-SSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
+ G L +G +++ + F+A N + + R L+A+
Sbjct: 140 WAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADA 199
Query: 748 ADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATE-----GNANLVNMDNTE 799
A +++ G + ++ F V TI + YG TE GN + + +
Sbjct: 200 AARIKLKLRVASSAGEPLNPEVVRWFQANLGV-TIHDHYGQTETGMPVGNHHALAHEVRA 258
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
G++G LP + +A++ D QP+ D +PG + ++ S
Sbjct: 259 GSMG-----LPLPGYRIAVLDDD---GQPLAD-----------GEPGQLAIDVASSPL-L 298
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY D E +++ +++++GD++ DE GY +F R D G +
Sbjct: 299 WFSGYWDDPEKTAELIA------GRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGP 352
Query: 920 MEVEATISKYLPYTEFTVYGVK-----------VGDLDGRAGMIAIVDTSNQVDLKLLVQ 968
+VE+ + ++ E V GV V +G AG + + +L+L V+
Sbjct: 353 FDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAE-----ELQLFVK 407
Query: 969 GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
L A+A P V + A+ T + KI++ L+
Sbjct: 408 ---KRLSAHAYPREVEFVPALPKTPSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 4e-16
Identities = 122/534 (22%), Positives = 201/534 (37%), Gaps = 91/534 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ID + +A L G +KGD + + N + A +LG + + TN ++ P
Sbjct: 36 REIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV--WVPTNFRQTP 93
Query: 569 --LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
+ + ++A+I A + A+R + PD+ + + L+ +
Sbjct: 94 DEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGA 153
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG----KHLLSLGSG---- 678
V + + D + +TSGTTG PKAA VL GQ+ HL L G
Sbjct: 154 RVANAA-VDHDDPCWFFFTSGTTGRPKAA------VLTHGQMAFVITNHLADLMPGTTEQ 206
Query: 679 DVIYNCLPMYHSAG--GLIGTI--PALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG 734
D P+ H AG L A +L S +F + + +++ +
Sbjct: 207 DASLVVAPLSHGAGIHQLCQVARGAATVLLPS----ERFDPAEVWALVERHRVTNLFTVP 262
Query: 735 EMCRYLLASKESEADYSHQVVKMI---GVGM-RGDIWAKFVKRFHVQTIIEFYGATEGNA 790
+ + +L + Y H ++ + G M R D K V +++++G E
Sbjct: 263 TILK-MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKV--LVQYFGLGEVTG 319
Query: 791 NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMII- 849
N+ T+LP LH E+ P D + G C + + GM +
Sbjct: 320 NI--------------TVLPPALHD--------AEDGP--DARIG---TCGFERTGMEVQ 352
Query: 850 --------------GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMD 895
GEI P+ F GY + E+ K F+ G +F +GD+ +D
Sbjct: 353 IQDDEGRELPPGETGEICVIGPAV-FAGYYNNPEANAK----AFRDG--WFRTGDLGHLD 405
Query: 896 ELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG----M 951
G+LY R D Y G NV E+E + + +E V GV D G
Sbjct: 406 ARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVP----DPVWGEVGVA 461
Query: 952 IAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
+ + VD L+ LD + Y P A+ +G KI K ++ E
Sbjct: 462 VCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREE 515
|
Length = 528 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-16
Identities = 97/510 (19%), Positives = 189/510 (37%), Gaps = 95/510 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D+ ++++A L + G + GDV+A N E+V V+L A++G + I +++
Sbjct: 5 GELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRERE 64
Query: 569 LVHSISTVKSKAIIVSALY----YPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTP 624
L + +++ + V + Y + PD + LL
Sbjct: 65 LGFILRQARARVLFVPDEFRGFDYAAM-------PD-DVALL------------------ 98
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+YTSGTTG PK + + +L + L L DV+
Sbjct: 99 ------------------LYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMP 140
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGI----YIGEMCRYL 740
P+ H G L G L+LG+++ ++ ++ + ++ + ++ ++
Sbjct: 141 SPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLA-- 198
Query: 741 LASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFH---VQTIIEFYGATEGNANLVNMD 796
A+ + D +V G + + +R ++ YG TE V
Sbjct: 199 -AADAAGPDLPSLRVFLCGG----APVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTP 253
Query: 797 NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG---LCIRCKYNQPGMIIGEIK 853
+ T PV ++ +V++ P L +R P + +G
Sbjct: 254 DDPDDK-----RAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVR----GPQLFLG--- 301
Query: 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
Y D ++ + + D +F +GD+ +D GYL R D
Sbjct: 302 ----------YLDPPDNTEAFTD------DGWFRTGDLGRLDADGYLRITGRKKDIIIRG 345
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA- 972
GEN+S E+E + ++ E V + L R + + + L L + L A
Sbjct: 346 GENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ 405
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L P + ++ A+ T + K++K +L
Sbjct: 406 GLAKQKWPERLEVVDALPRTPSGKVQKFEL 435
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-15
Identities = 114/507 (22%), Positives = 183/507 (36%), Gaps = 57/507 (11%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++DE S+ +A LQ + V+ +MC N +V L A ++G L+NT+ L
Sbjct: 73 ELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPAL 132
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
++ +I + ++ P ++ T D +++ A +
Sbjct: 133 AEVVTREGVDTVIYDEEFSATVDRALADCPQATR-IVAWTDEDHDLTVEVLIAAHAGQRP 191
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS---LGSGDVIYNCLP 686
+ LL TSGTTG PK A G K +L + + P
Sbjct: 192 EPTGRKGRVILL---TSGTTGTPKGARRSGPG---GIGTLKAILDRTPWRAEEPTVIVAP 245
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-ASKE 745
M+H A G + A L +I R +F +++ + M ++ E
Sbjct: 246 MFH-AWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE 304
Query: 746 SEADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
YS + ++ G MR D+ F+ +F I Y ATE
Sbjct: 305 VRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATE--------------A 349
Query: 803 GIIPTLLPTFL--HPVAIIQFDLVENQPIRDPKTGLCIRC---KYNQ-PGMIIGEIKQSD 856
G+I T P L P + R P G IR + + P +G I +
Sbjct: 350 GMIATATPADLRAAP----------DTAGR-PAEGTEIRILDQDFREVPTGEVGTIFVRN 398
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
F GY S K D + SGD+ +DE G L+ R + GEN
Sbjct: 399 -DTQFDGYTSG--STKDFH-------DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGEN 448
Query: 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPA 976
V +EVE T++ + E V GV R ++ + L Q + NL
Sbjct: 449 VYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLAN 508
Query: 977 YARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
Y P + ++ + T KI + +LQ
Sbjct: 509 YKVPRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-15
Identities = 100/448 (22%), Positives = 157/448 (35%), Gaps = 87/448 (19%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++DE SN++A + + G K+GD +A+ EN Y+ V A + G+ +N++L
Sbjct: 28 RELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAE 87
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL---DETKPDLPNLSDLMKTTPA 625
+ + ++A+I SA A+ + P V+ L+ D ++ + PA
Sbjct: 88 AAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPA 147
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ-----VGKHLLSLGSGDV 680
+ + E L T +Y+SGTTG PK P + + L S V
Sbjct: 148 TPI-ADESLGT----DMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMV 202
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEM-CRY 739
+ P+YHSA + + LG ++ + F A Y +Y + M R
Sbjct: 203 YLSPAPLYHSA-PQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRM 261
Query: 740 LLASKESEADYSHQVVK----------------MIGVGMRGDIWAKFVKRFHVQTIIEFY 783
L +E Y ++ MI D W I E+Y
Sbjct: 262 LKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMI------DWWGP--------IIHEYY 307
Query: 784 GATEGNANLVNMDNTE------GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
ATEG ++E G VG + LH I D
Sbjct: 308 AATEG--LGFTACDSEEWLAHPGTVG---RAMFGDLH--------------ILDDDGAEL 348
Query: 838 IRCKYNQPGMIIGEI--KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMD 895
P G I + P + A E++ P + GD+ +D
Sbjct: 349 -------PPGEPGTIWFEGGRPFEYLNDPAKTAEAR--------HPDGTWSTVGDIGYVD 393
Query: 896 ELGYLYFKDRTGDTYRWKGENVSTMEVE 923
E GYLY DR G N+ E E
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAE 421
|
Length = 511 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 3e-15
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 8/226 (3%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +D ++++A L G + GD +A E+ ++L K+G +S + + ++
Sbjct: 53 SALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAE 112
Query: 569 LVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVK-LFLLDETKPDLPNLSDLMKT 622
LV ++ ++K L+ I ++ +P ++ + +D+ P +LS L +
Sbjct: 113 LVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLS-LSQI 171
Query: 623 TPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVI 681
E + D L + +TSGT GLPK ++ + +L + L+L DV
Sbjct: 172 IADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVF 231
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727
P+ H+ G L G ++G+ + F+ + +C
Sbjct: 232 MMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRC 277
|
Length = 547 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-15
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
D + + + ++N+ A L+ G KKGDV+AL+ ENRPEY+ WL AKLG ++ L N
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-15
Identities = 100/438 (22%), Positives = 182/438 (41%), Gaps = 60/438 (13%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ S K A +L G ++GD +A++ PE+ V + + G++ L +
Sbjct: 46 ELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKD 105
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPAS 626
+++ + K+K I+ S P +++I P +K LL + ++ N +L+K AS
Sbjct: 106 ILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLVSEHSRDGWLNFKELLKE--AS 163
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVIYNCL 685
++ + + +TSGTTG PK A + + LG +V G++ L L D+++N
Sbjct: 164 TEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNM- 222
Query: 686 PMYHSAGGLIGTIPAL----ILGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGEMCR- 738
G + I +L I G+ + + +F + +KY I C
Sbjct: 223 ---SDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYP------ITTFCSA 273
Query: 739 ---YLLASKESEADYSHQVVKMIGVGMRGD-IWAKFVKRFHVQT---IIEFYGATEGN-- 789
Y + ++ Y + ++ G G+ + + ++++ QT + E YG TE
Sbjct: 274 PTVYRMLVQQDLTSYKFKSLRHCVTG--GEPLNPEVLEQWKAQTGLDLYEGYGQTETGLI 331
Query: 790 -ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMI 848
AN M G++G + + V II +N + P G I
Sbjct: 332 CANFKGMKIKPGSMG-----KASPPYDVQIID----DNGNVLPP----------GTEGDI 372
Query: 849 IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGD 908
+K + P F Y D E + GD ++++GD +MDE GY +F R D
Sbjct: 373 GIRVKPTRPFCLFSCYVDNPEKTAATIR-----GD-FYITGDRGIMDEDGYFWFVGRADD 426
Query: 909 TYRWKGENVSTMEVEATI 926
G + EVE+ +
Sbjct: 427 VINSSGYRIGPFEVESAL 444
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-15
Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 19/234 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E +A L G GD +A+ NRPE+ L LG +S I + +
Sbjct: 49 RELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQ 108
Query: 569 LVHSISTVKSKAIIVSALYYP----EIEAIRESIP------DVKLFLLDETKPDLPNLSD 618
L + ++ +SK I V + + D+ ++ L D
Sbjct: 109 LAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168
Query: 619 L--MKTTPASEVKPSEPLQTS-DSL-LYIYTSGTTGLPKAAIMPNFKVLL--GGQVGKHL 672
S D L IYTSGTTG PK ++ + LL + + L
Sbjct: 169 EGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVML-THRNLLAQVAGIDEVL 227
Query: 673 LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
+G GD + + LP+ H L L + + K D + +
Sbjct: 228 PPIGPGDRVLSFLPLAHI-FERAFEGG-LALYGGVTVLFKEDPRTLLEDLKEVR 279
|
Length = 613 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 92/442 (20%), Positives = 155/442 (35%), Gaps = 123/442 (27%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+ + SN++A L+ G ++GD + LM N PE L A KLG + T L
Sbjct: 4 AQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLTPAD 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L S K KAI+ DET+ D
Sbjct: 64 LRDRFSRGKPKAIVA-----------------------DETRAD---------------- 84
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
D +L +TSGTTGLPK + + +G + + L GD+ N
Sbjct: 85 ---------DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNI---- 131
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFR----DCAKY-----KCNAGIYIGEMCRY 739
S+ G K + S++F + + +A Y+G + ++
Sbjct: 132 -SSPGW----------------AKHAWSSFFAPWNAGATVFGINYPRFDARRYLGALEKF 174
Query: 740 LLAS------------KESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGA 785
+ + ++ A Y ++ + + G + ++ + K + + TI + YG
Sbjct: 175 GVTTFCAPPTVWRMFIQQDLAQYDVRLREAVSAGEPLNPEVIERVKKAWGL-TIRDGYGQ 233
Query: 786 TEGNANLVNM---DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842
TE A + N G++G P + V ++ E + I + + +
Sbjct: 234 TETTAMIGNSPGQKVKPGSMG-----RPLPGYRVVLLD---DEGKEIPVTEGEIALDLGD 285
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G+ GY E Y+ +GD DE GYL+F
Sbjct: 286 RPIGL-------------MLGYMGDPEKTAAA------FRGGYYRTGDKAYRDEDGYLWF 326
Query: 903 KDRTGDTYRWKGENVSTMEVEA 924
R D ++ +S EVE+
Sbjct: 327 VGRADDVFKSSDYRISPFEVES 348
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-14
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 126 LVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRP 185
L +++ +R P+ P F T ++DE S++ A LQ G KKGD +ALM N P
Sbjct: 1 LADLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCP 60
Query: 186 EYVGVWLGAAKLGVI 200
++ + G K G +
Sbjct: 61 QFPIAYFGILKAGAV 75
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-14
Identities = 122/536 (22%), Positives = 197/536 (36%), Gaps = 94/536 (17%)
Query: 510 QIDEYSNKIARI---LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566
DE + + AR L G + GD +AL+ N + A +LG + +N + K
Sbjct: 13 SFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKP 72
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP---NLSDLMKTT 623
+ + + + ++ +I A + + ++P L T P++ +S + T
Sbjct: 73 EEIAYILEDSGARVLIAHA---DLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTP 129
Query: 624 PASEV---------KPSEPLQTSDSLLYIYTSGTTGLPK----AAIMPNFKVLLGGQVGK 670
PA + +P + IYTSGTTG PK AA P + Q+
Sbjct: 130 PAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPE-QAAAAEQMRA 188
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG 730
+ L G P+YHSA G + A LG + ++ +F + +++
Sbjct: 189 LIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQPRFDPEELLQLIERHRITHM 247
Query: 731 IYIGEM-CRYLLASKESEADY-----SHQV---------VK--MIGVGMRGDIWAKFVKR 773
+ M R L +E A Y H + VK MI + W
Sbjct: 248 HMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMI------EWWGP---- 297
Query: 774 FHVQTIIEFYGATEGNANLVNMDNTE------GAVGIIPTLLPTFLHPVAIIQFDLVENQ 827
I E+YG+TE A V +E G VG P A ++F + +
Sbjct: 298 ----VIYEYYGSTESGA--VTFATSEDALSHPGTVGKAA--------PGAELRFVDEDGR 343
Query: 828 PIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 887
P+ P IGEI + Y +K E + +I +
Sbjct: 344 PL---------------PQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDR------GGFIT 382
Query: 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947
SGD+ +D GYL+ DR D G N+ E+EA + + V+G+ + G
Sbjct: 383 SGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEF-G 441
Query: 948 RAGMIAI-VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
A M + +D + L A L Y P + IM + + KI K +L
Sbjct: 442 EALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRL 497
|
Length = 509 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 6e-14
Identities = 103/514 (20%), Positives = 192/514 (37%), Gaps = 54/514 (10%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++D ++IA L G +GDV++ NR E+ ++L A++G + + +++ L
Sbjct: 58 ELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFREREL 117
Query: 570 VHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVK-LFLLDETKPD----LPNLSDL 619
++ SK +V +++ ++ +P ++ + ++D D + +
Sbjct: 118 SFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPER 177
Query: 620 MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGSG 678
T A+ + D IYTSGTTG PK +M L L LG G
Sbjct: 178 DDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPK-GVMHTANTLFSNIHPYAERLELGGG 236
Query: 679 DVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFR----DCAKYKCNAGIYIG 734
DVI PM H G + G + LIL ++ ++ ++ + + + ++
Sbjct: 237 DVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLT 296
Query: 735 EMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE-GNANLV 793
++CR A KES A + I + I+ +G TE G +
Sbjct: 297 DLCR---AVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVT 353
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP--KTG-LCIRCKYNQPGMIIG 850
D+ P+ ++ +++ + +TG L +R N
Sbjct: 354 EPDDALEKASTTDGR------PLPGVEVKVIDANGAKLSQGETGRLLVRGCSN------- 400
Query: 851 EIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTY 910
F GY + E F GD F + GY+ R+ D
Sbjct: 401 ----------FGGYLKRPHLNSTDAEGWFDTGDLAFQDAE-------GYIRINGRSKDVI 443
Query: 911 RWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGL 970
GEN+ +E+E + ++ + + L RA + + +D +V L
Sbjct: 444 IRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFL 503
Query: 971 DANLPAYAR-PLFVRIMKAIEMTGTFKIKKIQLQ 1003
A A P + ++ A+ T KI+K +L+
Sbjct: 504 KAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 6e-14
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGD-VLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
++D+ +A L G GD VL LM NR E+V L A LG I+ +N L
Sbjct: 46 RELDDRVAALAGALSRRGVGFGDRVLILML-NRTEFVESVLAANMLGAIAVPVNFRLTPP 104
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPA 625
+ +S + ++ A P A+R+ +P + ++ + + DL+ A
Sbjct: 105 EIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLL----A 160
Query: 626 SEVKPSEPLQTSDS--LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG---SGDV 680
P+ + L +YTSGTTG PK A++ + L GQ L + G + DV
Sbjct: 161 EAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHAN--LTGQAMTCLRTNGADINSDV 218
Query: 681 IYNCLPMYHSAGGLIGTI-PALILGSSIAI 709
+ +P++H AG IG++ P L+LG+ I
Sbjct: 219 GFVGVPLFHIAG--IGSMLPGLLLGAPTVI 246
|
Length = 542 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-14
Identities = 120/545 (22%), Positives = 210/545 (38%), Gaps = 93/545 (17%)
Query: 510 QIDEYSNKIAR-ILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ D+ + A +L + KKGD +ALM N +Y G + G+ +N +
Sbjct: 55 EADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRE 114
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLF------LLDETKPDLPN--LSDLM 620
L H + + ++V + ++ + P ++ +L K L N + +
Sbjct: 115 LKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVK 174
Query: 621 KTTPASEVK-----------------PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL 663
K P + P+ ++ D YT GTTG+ K A++ + ++
Sbjct: 175 KLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLV 234
Query: 664 LGGQVGKHLLSLGSG------DVIYNCLPMYH----SAGGLIGTIPALILGSSIAIRTKF 713
Q L+ G+G +V+ LP+YH +A GL+ I G + I
Sbjct: 235 ANMQQAHQWLA-GTGKLEEGCEVVITALPLYHIFALTANGLVFM---KIGGCNHLISNPR 290
Query: 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSHQVVKM-IGVGMR-----GDI 766
+ ++ K + A + + LL + + D+S +KM +G GM +
Sbjct: 291 DMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSS--LKMTLGGGMAVQRSVAER 348
Query: 767 WAKFVKRFHVQTIIEFYGATEGNA----NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFD 822
W K+ T++E YG TE + N + + G++G+
Sbjct: 349 W----KQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGL------------------ 386
Query: 823 LVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ---SDPSRHFYGYADKKESQKKILENVF 879
PI P T CI+ + IGEI + P + GY + E K+++
Sbjct: 387 -----PI--PSTDACIKDDAGT-VLAIGEIGELCIKGP-QVMKGYWKRPEETAKVMD--- 434
Query: 880 KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYG 939
D + +GD+ MDE G++Y DR D G NV E+E I+ E G
Sbjct: 435 --ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVG 492
Query: 940 VKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
V + G + IV + + + ANL Y +P + K + T KI +
Sbjct: 493 VP-DEKSGEIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILR 551
Query: 1000 IQLQN 1004
+L++
Sbjct: 552 RELRD 556
|
Length = 560 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN-----TN 563
A ++ S ++A L G ++GDV+ L+ N PE+V +LGA++ G ++ N
Sbjct: 54 ADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAE 113
Query: 564 LKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
+ KQ +K II + Y +++ + E V + +D+ + S+L T
Sbjct: 114 IAKQ-----AKASGAKLIITQSCYVDKLKGLAED-DGVTVVTIDDPPEGCLHFSEL--TQ 165
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG---QV-GKHL-LSLGSG 678
P + D + Y+SGTTGLPK +M K L+ QV G++ L S
Sbjct: 166 ADENELPEVEISPDDVVALPYSSGTTGLPK-GVMLTHKGLVTSVAQQVDGENPNLYFHSD 224
Query: 679 DVIYNCLPMYHSAGGLIGTIPALIL-----GSSIAIRTKF 713
DVI LPM+H I ++ +++L G++I I KF
Sbjct: 225 DVILCVLPMFH-----IYSLNSVLLCGLRVGAAILIMPKF 259
|
Length = 537 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 3e-13
Identities = 103/506 (20%), Positives = 169/506 (33%), Gaps = 84/506 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+D + +A+ L+ G + G +AL+ +N E V + LG A++NT L +
Sbjct: 3 QDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTEN- 61
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLF---LLDETKPDLPNLSDLMKTTPA 625
E E + L LL+E +L +
Sbjct: 62 ---------------------ERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGR- 99
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGSGDVIYNC 684
E S ++TSGTTG PKA F+ VG K L D
Sbjct: 100 YETSLSASFNMDQIATLMFTSGTTGKPKAVPH-TFRNHYASAVGSKENLGFTEDDNWLLS 158
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK 744
LP+YH GL LI G+++ I KF+ A + + LL
Sbjct: 159 LPLYH-ISGLSILFRWLIEGATLRIVDKFNQ--LLEMIANERVTHISLVPTQLNRLL--D 213
Query: 745 ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF--YGATEGNANLVN----MDNT 798
E + + + + + G I A ++ + + YG TE + + M +
Sbjct: 214 EGGHNENLRKILLGG----SAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHA 269
Query: 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
VG P + I + + I M+ G
Sbjct: 270 RPDVGR-----PLAGREIKIKVDNKEGHGEI-----------------MVKGANL----- 302
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
GY + E + G +F +GD+ +D G+LY R D GEN+
Sbjct: 303 --MKGYLYQGELT----PAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLIISGGENIY 354
Query: 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM--IAIVDTSNQVDLKLLVQGLDANLPA 976
E+E + ++ E V D G +A + + + + L+ L L
Sbjct: 355 PEEIETVLYQHPGIQEAVVVPKP----DAEWGQVPVAYIVSESDISQAKLIAYLTEKLAK 410
Query: 977 YARPLFVRIMKAIEMTGTFKIKKIQL 1002
Y P+ + + + KI + QL
Sbjct: 411 YKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 126/582 (21%), Positives = 217/582 (37%), Gaps = 124/582 (21%)
Query: 489 EASNARSTNDAA------ATTVKNLEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRP 541
E S R + A A + + L + ++A LQ + G +KGD + L +N P
Sbjct: 17 EVSARRYPDKTAIVFYGRAISYRELLEEA----ERLAGYLQQECGVRKGDRVLLYMQNSP 72
Query: 542 EYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIE------AIR 595
++V + + + +N +++ L H ++ ++ IV + P++ +R
Sbjct: 73 QFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLR 132
Query: 596 ESI-----------PDVKLFLLDETKPDLPNLSD----LMKTTPASEVKPSEPLQTSDSL 640
I P++ + +P L L+ K A+ + P D L
Sbjct: 133 HVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDL 192
Query: 641 LYI-YTSGTTGLPKAAIMPNFKVL---LGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
+ YTSGTTG+PK + + V+ +G + V+ LP++H G +
Sbjct: 193 AVLPYTSGTTGVPKGCMHTHRTVMANAVGSV---LWSNSTPESVVLAVLPLFHVTGMVHS 249
Query: 697 TIPALILGSSIAIRTKFSASNYFRDCA-----KYKCNAGIYIGEMCRYLLAS-KESEADY 750
+ G+++ + ++ R+ A +Y+ I M LAS +E D
Sbjct: 250 MNAPIYAGATVVLMPRWD-----REAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDL 304
Query: 751 SHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPT 807
S ++ IG G M + + + + +E YG TE T
Sbjct: 305 SS--LRYIGGGGAAMPEAVAERLKELTGL-DYVEGYGLTE-------------------T 342
Query: 808 LLPTFLHPVA--------IIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
+ T +P I F V+ + I DP+T + PG +GEI P
Sbjct: 343 MAQTHSNPPDRPKLQCLGIPTFG-VDARVI-DPETL-----EELPPGE-VGEIVVHGPQV 394
Query: 860 HFYGYADKKESQKKILENVFKP--GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
F GY ++ E+ F G ++F +GD+ MDE GY + DR G V
Sbjct: 395 -FKGYWNRPEAT----AEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKV 449
Query: 918 STMEVEAT------------ISKYLPYTEFTVYGVKVGDLDGRAGMIA--IVDTSNQVDL 963
EVE I+ P TV V V + R I+ + +
Sbjct: 450 WPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWARE--- 506
Query: 964 KLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
++ AY P V + ++ +G+ KI QLQ +
Sbjct: 507 ---------HMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ 539
|
Length = 546 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-13
Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 9/210 (4%)
Query: 492 NARSTNDAAATTVKN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
A DA A + A + E +A L+ G +G+ +A+ + R E V
Sbjct: 9 AAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMF 68
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLD 607
GAA G + IN LK + + H ++ + ++ S+ + D+ L ++
Sbjct: 69 GAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVG 128
Query: 608 ETKPDLPNLSDLM-----KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKV 662
+ K + P P+ SD +YTSG+TG PK ++ + +
Sbjct: 129 DPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNL 188
Query: 663 LLGGQVGKHLLSLGSGDVIYNCLPMYHSAG 692
+ G Q L D + LP+ G
Sbjct: 189 VAGAQSVATYLENRPDDRLLAVLPLSFDYG 218
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 493 ARSTNDAAATTVKNLE---------AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 543
S D A T L ++ +++A L G +GDV++ N E+
Sbjct: 34 VASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEF 93
Query: 544 VGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY----YPEI-EAIRESI 598
++L +++G + + +++ L + +SK ++V + + + +R +
Sbjct: 94 TVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPEL 153
Query: 599 PDVK-LFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSL--------LYIYTSGTT 649
P ++ + ++ D + + + TPA E +P P L IYTSGTT
Sbjct: 154 PALRHVVVVGG---DGADSFEALLITPAWEQEPDAP-AILARLRPGPDDVTQLIYTSGTT 209
Query: 650 GLPKAAIMPNFKVLLGGQVG-KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706
G PK M L+ V L LG+ DVI PM H G + G + ++LG++
Sbjct: 210 GEPKGV-MHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGAT 266
|
Length = 547 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-12
Identities = 108/527 (20%), Positives = 193/527 (36%), Gaps = 67/527 (12%)
Query: 522 LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAI 581
L G + GDV+A+ N Y+ L A G I A +N + ++ V+ +
Sbjct: 49 LLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVML 108
Query: 582 IV--SALYYPEIEAIRESIPDVKL-FLLDETKPDL-PNLSDLMKTTPASEVKPSEPLQT- 636
+ + + E + +P + L+ + L+ + T +
Sbjct: 109 VTDETCSSWY-EELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDY 167
Query: 637 ----SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAG 692
D++L +TSGTTG PK + + +++ ++ G DV + P+ H G
Sbjct: 168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH-IG 226
Query: 693 GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA-SKESEADYS 751
GL + L++G+ + KF A + ++ + I + M L++ +++S
Sbjct: 227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV 286
Query: 752 HQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808
V+ I G + + K F + YG TE ++L M
Sbjct: 287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFM----------TLH 336
Query: 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR--------- 859
PT P +Q G+C+ + +I + SR
Sbjct: 337 DPTLESPKQTLQTVNQTKSSSVHQPQGVCVG---KPAPHVELKIGLDESSRVGRILTRGP 393
Query: 860 H-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
H GY + +L N D + +GD+ +D+ G L+ R+ D + GENV
Sbjct: 394 HVMLGYWGQNSETASVLSN-----DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVY 448
Query: 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI-------------AIVDTSNQVDLKL 965
EVEA +S++ V GV D R + + + N
Sbjct: 449 PEEVEAVLSQHPGVASVVVVGVP----DSRLTEMVVACVRLRDGWIWSDNEKENAKKNLT 504
Query: 966 LVQGL------DANLPAYARP-LFVRIMKAIEMTGTFKIKKIQLQNE 1005
L + NL + P LFV+ K +T T KI++ +++ E
Sbjct: 505 LSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRRE 551
|
Length = 563 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-12
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDE--TWTIKQIDEYSNKIARILQDDGFKKGDV 176
TL S +++ +R P+ P F T +++D +N++A LQ G K GD
Sbjct: 6 RMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDR 65
Query: 177 LALMCENRPEYVGVWLGAAKLGVI 200
+A++ N PE++ +L A + G +
Sbjct: 66 VAILLPNSPEFLIAFLAALRAGAV 89
|
Length = 534 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKKQ 567
++ E SNK A +L++ G +KGD + + PE Y + LGA K G I + ++
Sbjct: 77 KELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL-LGALKNGAIVGPLFEAFMEE 135
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL----DETKPDLPNLSDLMKTT 623
+ + ++K +I + + +P +K LL E P + + LM+
Sbjct: 136 AVRDRLEDSEAKVLITTPALLERK--PADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQ- 192
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
AS+ E D + YTSG+TG PK + + +L Q GK++L L D +Y
Sbjct: 193 -ASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDD-VYW 250
Query: 684 C 684
C
Sbjct: 251 C 251
|
Length = 570 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 89/387 (22%), Positives = 147/387 (37%), Gaps = 56/387 (14%)
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH-----LLSLGSGDVIYNCLPMYHSA 691
D Y +T GTTG PK A + +V L LG GDV+ N LP++H
Sbjct: 2 DDLAAYFHTGGTTGAPKLA-----RHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVG 56
Query: 692 GGLIGTIPAL------ILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE 745
G ++ + L +L + R +N+++ +Y+ + + LL
Sbjct: 57 GAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPL 116
Query: 746 SEADYSHQVVKMIGVG-MRGDIWAKFVKRFHVQTIIEFYGATEGNA----NLVNMDNTEG 800
+AD S + G + ++ +F V ++E YG TEG N G
Sbjct: 117 GDADISSLRYALTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPG 175
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
+VG+ LP V + + D RD C + G++ P+
Sbjct: 176 SVGL---RLP--YTRVRVAKLDA-GGALGRD--------CAPGEVGVLA----IRGPNV- 216
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY + + + D + +GD+ +D GYL+ R D G N+
Sbjct: 217 FPGYLNDAHNAG------ARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQ 270
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGM--IAIVDTSNQVDLKL--LVQGLDANLP- 975
+E + ++ P VG D AG +A V + L+ + A +P
Sbjct: 271 MIEEALLRH-PAVAL---AAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPE 326
Query: 976 AYARPLFVRIMKAIEMTGTFKIKKIQL 1002
A P + I+ A+ +T KI K +L
Sbjct: 327 RAAVPKAIYIIDALPLTAVGKIFKPRL 353
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-12
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 21/209 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E +A L G KKGD +AL+ +N E + V +LG ++ L+NT L ++
Sbjct: 31 MELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREE 90
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+ + + K +I + ++ ++LM P E
Sbjct: 91 LLWQLDDAEVKCLITDDDFEAKLIPGISVK-----------------FAELMN-GPKEEA 132
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-LSLGSGDVIYNCLPM 687
+ E + +YTSGTTG PK ++ + VG L L L D +P+
Sbjct: 133 EIQEEFDLDEVATIMYTSGTTGKPK-GVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPI 191
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSAS 716
+H GL + ++I G + + KF A
Sbjct: 192 FH-ISGLSILMRSVIYGMRVVLVEKFDAE 219
|
Length = 483 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 7e-12
Identities = 107/462 (23%), Positives = 178/462 (38%), Gaps = 73/462 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A LQ G +KGD +A+M N P+ V + G G I N ++ L + +
Sbjct: 61 RFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDS 120
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM-------KTTPASEVK 629
+K I+ L +P + + +S ++ ++ LP +L+ ++ +V
Sbjct: 121 GAKVILCLDLVFPRVTNV-QSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179
Query: 630 PSEPLQTSDSL-------------------LYIYTSGTTGLPKAAIMPNFKVLLGGQVGK 670
SE + +S+ L YT GTTG PK ++ + ++ +G
Sbjct: 180 ESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGV 239
Query: 671 HLL--SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728
L +V+ LP +H G +++ G + + KF F K+K
Sbjct: 240 QWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVT 299
Query: 729 -----AGIYIGEMCRYLLASKESEADYSHQVVKMIGVG-MRGDIWAKFVKRFHVQTIIEF 782
IYI + LL E D S + G + ++ KF + ++E
Sbjct: 300 LFPGAPTIYIALLNSPLL----KEYDISSIRACISGSAPLPVEVQEKF-ETVTGGKLVEG 354
Query: 783 YGATEGN----ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838
YG TE + +N + G++G+ P I+ + TG +
Sbjct: 355 YGLTESSPVTHSNFLWEKRVPGSIGV-----PWPDTEAMIMSLE-----------TGEAL 398
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
PG I GEI P + GY +K E +L+ D + +GD+ MDE G
Sbjct: 399 P-----PGEI-GEIVVKGP-QIMKGYWNKPEETAAVLQ------DGWLHTGDVGYMDEDG 445
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
+ Y KDR D G NV EVE + ++ E GV
Sbjct: 446 FFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGV 487
|
Length = 563 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 103/423 (24%), Positives = 170/423 (40%), Gaps = 60/423 (14%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN-----TNLKKQPLVHSIS---TVK 577
G ++GDV+ L+ N + ++L LG I +N +KK+ + S+ T
Sbjct: 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSP 147
Query: 578 SKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637
+S L P I +P+ F D + + P +L+K KP ++
Sbjct: 148 ENVEKLSPLGVPVI-----GVPENYDF--DSKRIEFPKFYELIKEDFDFVPKP--VIKQD 198
Query: 638 DSLLYIYTSGTTGLPKAAIMP--NFKVLLGGQV---GKHLLSLGSGDVIYNCLPMYHSAG 692
D +Y+SGTTG K ++ N ++ V GS +V LPM+H G
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYG 258
Query: 693 GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSH 752
+ + L LGS+I + +F AS+ + ++K + + L +
Sbjct: 259 LSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVL 318
Query: 753 QVVKMIGVG---MRGDIWAKFVKRF-HVQTIIEFYGATEGNANLVNMDNTE-----GAVG 803
+ +K + G + G FV+ HV I+ YG TE A NTE +VG
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVD-FIQGYGMTESTAVGTRGFNTEKLSKYSSVG 377
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
+ L P +Q +V D TG + PG GE+ P
Sbjct: 378 L---LAPN-------MQAKVV------DWSTGCLL-----PPGN-CGELWIQGPGVMKGY 415
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
+ K +Q I + D + +GD+ DE GYLY DR + ++KG ++ ++E
Sbjct: 416 LNNPKATQSTIDK------DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLE 469
Query: 924 ATI 926
A +
Sbjct: 470 AVL 472
|
Length = 560 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-11
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 54/181 (29%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++ + +N+ A +L+ G GD + L+ + PE V +L K G ++ +N L Q L
Sbjct: 15 ELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTPQDL 74
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
H + + ++ A
Sbjct: 75 EHILDDSGAALLVTEA-------------------------------------------- 90
Query: 630 PSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQ-VGKHLLSLGSGDVIYNCLPM 687
D + Y YTSGTTG PK + + L + + LL L GD I++ +
Sbjct: 91 --------DDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKL 142
Query: 688 Y 688
+
Sbjct: 143 F 143
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 49/201 (24%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E ++A L G K GD +A++ ENRPE+V L G + I +
Sbjct: 9 AELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSPEE 68
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++ ++ + V E KPD
Sbjct: 69 VAYILNDSGARVVFV------------------------EDKPD---------------- 88
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
D IYTSGTTG PK ++ + +L ++ L GD + + LP+
Sbjct: 89 ---------DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLA 139
Query: 689 HSAGGLIGTIPALILGSSIAI 709
H +G L G+ +
Sbjct: 140 HVFEQRLGEYLPLSSGARVNF 160
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV----GVWLGAAKLGVISALINTNL 564
AQ+ + + +IA LQ G + GD +A++ +N E++ +W+ G +S + L
Sbjct: 10 AQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMA----GHVSVPLYPTL 65
Query: 565 KKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPDLPNLSDLMK 621
+ + + + +KA+ V L + +A++ +P+ + T D DL+
Sbjct: 66 TAETIRYVLEHSDAKALFVGKL--DDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLA 123
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGD 679
T + PL + L I YTSGTTG PK M +F Q ++ L D
Sbjct: 124 ATEPLQ---GRPLPEPEDLATIVYTSGTTGQPKGV-MLSFGAFAFAAQGTIEIIGLTPND 179
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIA 708
+ + LP+ H A +I +L G+ +
Sbjct: 180 RLLSYLPLAHIAERVIVEGGSLYSGAEVF 208
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 1039 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLS 1083
+PG+++G+I Q+DP R F GY ++ + KKI +VFK GD FLS
Sbjct: 309 EPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLS 353
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-11
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
TL + + +R P+ P F WT + + A L G K+GD +ALMC NR
Sbjct: 22 TLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNR 81
Query: 185 PEYVGVWLGAAKLGVI 200
E++ V+LG A LG I
Sbjct: 82 IEFLDVFLGCAWLGAI 97
|
Length = 542 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 117/559 (20%), Positives = 209/559 (37%), Gaps = 91/559 (16%)
Query: 494 RSTNDAAATTV--KNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551
+ T L A + +N + + G GDV+A + N PE G
Sbjct: 49 DADPLDRPETWTYAELLADVTRTANLLHSL----GVGPGDVVAFLLPNLPETHFALWGGE 104
Query: 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY-----YPEIEAIRESIPDVKLFLL 606
G I+ IN L+ + + + +K ++ + + ++ + ++P+++ +
Sbjct: 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 607 DETKPDLP-------------------NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647
+ LP + + P + P+ D Y +T G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPA------- 700
TTG+PK A + + +G LL LG GD ++ LP++H L+ T A
Sbjct: 224 TTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFH-VNALLVTGLAPLARGAH 282
Query: 701 LILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGV 760
++L + R +N+++ +Y+ N + + LL D S ++
Sbjct: 283 VVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISS--LRYALC 340
Query: 761 G---MRGDIWAKFVKRFHVQTIIEFYGATEGNA----NLVNMDNTEGAVGIIPTLLPTFL 813
G + +++ +F V I+E YG TE N + + G+VG+ LP
Sbjct: 341 GAAPLPVEVFRRFEAATGV-RIVEGYGLTEATCVSSVNPPDGERRIGSVGL---RLP--Y 394
Query: 814 HPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKK 873
V ++ I D C ++ +G + + P+ F GY + ++
Sbjct: 395 QRVRVV---------ILDDAGRYLRDCAVDE----VGVLCIAGPNV-FSGYLEAAHNKGL 440
Query: 874 ILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT 933
LE D + +GD+ +D GY + R D G N+ +E + L +
Sbjct: 441 WLE------DGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEAL---LRHP 491
Query: 934 EFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYAR---------PLFVR 984
+ VG D AG + + V LK +A L A+AR P VR
Sbjct: 492 AVALAAA-VGRPDAHAGELPVA----YVQLKPGASATEAELLAFARDHIAERAAVPKHVR 546
Query: 985 IMKAIEMTGTFKIKKIQLQ 1003
I+ A+ T KI K L+
Sbjct: 547 ILDALPKTAVGKIFKPALR 565
|
Length = 632 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-11
Identities = 92/428 (21%), Positives = 156/428 (36%), Gaps = 57/428 (13%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVW--LGAAKLGVISALINTNLKKQPL----- 569
+ + + G GD +AL+ NRPE V +GAA+L + L T L PL
Sbjct: 49 RYIQAFEALGLGTGDAVALLSLNRPE---VLMAIGAAQL---AGLRRTAL--HPLGSLDD 100
Query: 570 -VHSISTVKSKAIIVSALYYPE-IEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
+ + +IV + E A+ +P +K L T +P+ DL+
Sbjct: 101 HAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVL---TLGPVPDGVDLLAAAAKFG 157
Query: 628 VKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG-SGDVIY-NC 684
P + + YT GTTG PK + + + L D + C
Sbjct: 158 PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRS--IATMAQIQLAEWEWPADPRFLMC 215
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-AS 743
P+ H+ G +P L+ G ++ + KF + R + + A + M LL
Sbjct: 216 TPLSHAGGAFF--LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHP 273
Query: 744 KESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
D S + V M A+ ++RF ++YG TE + +
Sbjct: 274 DLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQYYGQTEAPMVITYLR-KRDHD 331
Query: 803 GIIPTLLPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQSDPSR 859
P L + P ++ L+ + + + + G +C+R P ++ G + +
Sbjct: 332 PDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVR----GPLVMDGYWNRPE--- 384
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F+ G + +GD+ DE G+ Y DR D G NV
Sbjct: 385 --------------ETAEAFRDG--WLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFP 428
Query: 920 MEVEATIS 927
EVE ++
Sbjct: 429 REVEDVLA 436
|
Length = 524 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-11
Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQI + + K+++ L DG K GD +A + N ++ W G +G I +N L +
Sbjct: 43 AQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQ 102
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL---DETKPD--LPNL---SDLM 620
+ I+ + + +I + P +E I + +P V+ +++ P L N + +
Sbjct: 103 IAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWI 162
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV--GKHLLSLGSG 678
+ T+ + YTSGTTG PK + + +L + L +
Sbjct: 163 AEADGDFAWKTFDENTAAGM--CYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAA 220
Query: 679 DVIYNCLPMYHS-AGGLIGTIPA 700
D + +P++H+ + G+ + P+
Sbjct: 221 DTMLPVVPLFHANSWGIAFSAPS 243
|
Length = 542 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 7e-11
Identities = 109/528 (20%), Positives = 217/528 (41%), Gaps = 68/528 (12%)
Query: 497 NDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556
+D ++ + LEAQ+ + R+ G K+ + + L+ + ++ +LGA + G++
Sbjct: 26 DDISSLSYGELEAQVRRLGAALRRL----GVKREERVLLLMLDGVDFPIAFLGAIRAGIV 81
Query: 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLPN 615
+NT L + + +++ + VS P I+A P ++ +
Sbjct: 82 PVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQ 141
Query: 616 LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLS 674
L++L+ T SE Q D ++Y+SG+TG+PK + + ++ ++ L
Sbjct: 142 LAELLAT--ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG 199
Query: 675 LGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
+ DV+++ ++ + G G T P + +++ + + + F ++ I+
Sbjct: 200 IREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRH--QPTIFY 257
Query: 734 GEMCRY--LLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE-G 788
G Y +LA +E ++ G + ++ ++ RF V I++ G+TE
Sbjct: 258 GVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVD-IVDGIGSTEML 316
Query: 789 NANLVNM--DNTEGAVGIIPTLLPTFLHPVAIIQFDLVEN--QPIRDPKTGLCIRCKYNQ 844
+ L N+ D G G PV + LV + Q + +
Sbjct: 317 HIFLSNLPGDVRYGTSGK----------PVPGYRLRLVGDGGQDVAAGE----------- 355
Query: 845 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVF-KPGDKYFLSGDMMVMDELGYLYFK 903
GE+ S PS Y + + + + + + GDKY V ++ G +
Sbjct: 356 ----PGELLISGPSSA-TMYWNNRAKTRDTFQGEWTRSGDKY-------VRNDDGSYTYA 403
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-------- 955
RT D + G VS E+E+ + ++ E V GV+ D DG A +
Sbjct: 404 GRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVE--DEDGLIKPKAFIVLRPGQDI 461
Query: 956 DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
DT+ + +LK V+ L Y P ++ + + T T KI++ +L+
Sbjct: 462 DTALETELKEHVKDR---LAPYKYPRWIVFVDDLPKTATGKIQRFKLR 506
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-11
Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 25/246 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ + +++AR L G + GD + + N E++ A++G I IN +
Sbjct: 49 RQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASE 108
Query: 569 LVHSISTVKSKAIIVSALYYPE--IEAIRESIPDVKLFLLDETKP-DLPNLSDLMKTTPA 625
L +++ + +I + + ++E +P + LP L ++ PA
Sbjct: 109 LEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA 168
Query: 626 --------SEVKP-------------SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL 664
E++ L D + YTSGTTG PK A + + +L
Sbjct: 169 PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILN 228
Query: 665 GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI-RTKFSASNYFRDCA 723
G L L D + +P+YH G ++ + + +G+ + F +
Sbjct: 229 NGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVE 288
Query: 724 KYKCNA 729
+ +C A
Sbjct: 289 EERCTA 294
|
Length = 558 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-10
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 134 VKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193
++ P+ YF T ++DE N++A L+ G KKGD +A+ N EY+ +
Sbjct: 16 ARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFA 75
Query: 194 AAKLGVI 200
K+G +
Sbjct: 76 VPKIGAV 82
|
Length = 521 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 22/252 (8%)
Query: 490 ASNARSTNDAAATTVKNLEAQI-----DEYSNKIARILQDDGFKKGDVLALMCENRPEYV 544
++A+ D A V Q+ D+ S +AR+L D G + GDV+AL+ +N PE +
Sbjct: 4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL 63
Query: 545 GVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLF 604
V A + G+ IN +L + + ++ ++ SA + +P ++L
Sbjct: 64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLP-LRLS 122
Query: 605 LLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKA--AIMPNFKV 662
E + + + +E Q +++ +Y+SGTTG PK +P V
Sbjct: 123 FGGE----IDGFGSFEAALAGAGPRLTE--QPCGAVM-LYSSGTTGFPKGIQPDLPGRDV 175
Query: 663 LLGGQ----VGKHLLSLGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASN 717
G + + + D+ Y+ P+YH+A + A LG ++ + +F A
Sbjct: 176 DAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA--LGGTVVLAKRFDAQA 233
Query: 718 YFRDCAKYKCNA 729
+Y+
Sbjct: 234 TLGHVERYRITV 245
|
Length = 501 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 3e-10
Identities = 115/534 (21%), Positives = 203/534 (38%), Gaps = 66/534 (12%)
Query: 490 ASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
A +AR T D AA ++ E A+ + + A +L G +GDV+AL+ +N ++ +
Sbjct: 9 AFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLEL 68
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
A+ LG + IN L + + + +K ++V E +AI + ++
Sbjct: 69 AFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDE----EFDAI--VALETPKIVI 122
Query: 607 DE-TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMP--NFK-- 661
D + D L+ E+ P + +D + +YTSGTT PK + N
Sbjct: 123 DAAAQADSRRLA-----QGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWK 177
Query: 662 -----VLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716
+ LG + LL +G P+YH + I L +G ++ I +F
Sbjct: 178 SIDHVIALGLTASERLLVVG---------PLYHVGAFDLPGIAVLWVGGTLRIHREFDPE 228
Query: 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGD---IWAKFVKR 773
+++ M +L + + + IG G + I F +
Sbjct: 229 AVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRD-FTRV 287
Query: 774 FHVQTIIEFYGATE--GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRD 831
F I+ YG TE L+ +G L H VE + I D
Sbjct: 288 FTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALA---H---------VEIR-IAD 334
Query: 832 PKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDM 891
P + GEI P + D +++ + + F+ GD +
Sbjct: 335 GAGRWL-------PPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGY----- 382
Query: 892 MVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951
+DE G+LY DR D GEN+++ EVE I + E V GV R
Sbjct: 383 --LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITA 440
Query: 952 IAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
+ +++ + L+ L + L ++ P +++ + + K+ K L++E
Sbjct: 441 VVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDE 494
|
Length = 497 |
| >gnl|CDD|215998 pfam00567, TUDOR, Tudor domain | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 218 VHFKGIILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDT 277
+ K +L +L + +E + S G + D K + R ++ +
Sbjct: 19 IQPKSDDKKLEKLTEELQEYYLSKPPESLPPKVG---DGCVAAFSEDGK--WYRAKILVS 73
Query: 278 SDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAG 324
D L + F+DY + + +P DL P+ P ++LP QAI+C LAG
Sbjct: 74 LDDGLVEVFFIDYGNTETVPLSDLRPL--PSEFASLPPQAIKCSLAG 118
|
Length = 118 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-10
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
+T ++ E N++A L G + GD +ALM +N PE++ W KLG ++
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVA 55
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-10
Identities = 85/385 (22%), Positives = 157/385 (40%), Gaps = 70/385 (18%)
Query: 643 IYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
I++SG+ G PK I+ N + + + +L + DVI + LP +HS G +
Sbjct: 788 IFSSGSEGEPKGVMLSHHNILSNIEQI------SDVFNLRNDDVILSSLPFFHSFGLTVT 841
Query: 697 TIPALILG-SSIAIRTKFSASNYFRDCAKYKCNAGIYIGE--MCR-YLLASKESEADYSH 752
L+ G + A + AK+ A I +G R YL K +
Sbjct: 842 LWLPLLEGIKVVYHPDPTDALGIAKLVAKH--RATILLGTPTFLRLYLRNKKLHPLMF-- 897
Query: 753 QVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE-------------GNANLVNMD 796
++++ G ++ ++ F ++F + I+E YGATE
Sbjct: 898 ASLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGATETSPVASVNLPDVLAADFKRQTG 956
Query: 797 NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856
+ EG+VG P+ + +V DP+T + G+I+ I
Sbjct: 957 SKEGSVG----------MPLPGVAVRIV------DPETFE--ELPPGEDGLIL--IGGPQ 996
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
+ GY E ++++++ G ++++GD +DE G+L DR + GE
Sbjct: 997 VMK---GYLGDPEKTAEVIKDI--DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEM 1051
Query: 917 VSTMEVEATISKYLPYTE--FTVYGVKVGDLDGRAG-MIAIVDTSNQVDLKLLVQGL-DA 972
V VE ++K L E F V V D + G + ++ T D++ L + + ++
Sbjct: 1052 VPLGAVEEELAKALGGEEVVFAVTAVP----DEKKGEKLVVLHTCGAEDVEELKRAIKES 1107
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKI 997
LP +P ++A+ + G+ K+
Sbjct: 1108 GLPNLWKPSRYFKVEALPLLGSGKL 1132
|
Length = 1146 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
GY + E ++ L D + +GD D G+ ++ R D + G+ VS +
Sbjct: 297 APGYWNLPEKTQRTL------RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKL---LVQGLDANLPAY 977
EVEA + ++ E V V D R + + L L + L L Y
Sbjct: 351 EVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPY 410
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
P + + + T T K+++ +L+
Sbjct: 411 KCPRQIEFLDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
++A L+ G K GD +A + N ++ ++ +G + +N L + + + I+
Sbjct: 36 RRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINH 95
Query: 576 VKSKAIIVSALYYPEIEAIRESIPDVKLFLL----DETKPDLPNL---SDLMK-TTPASE 627
+ K I V + P +EAI +P VK ++ D + LPN+ +L++ +P E
Sbjct: 96 AEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYE 155
Query: 628 VKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLL----GGQVGKHLLSLGSGDVIY 682
P ++ + YTSGTTG PK + + ++L L L D +
Sbjct: 156 ----WPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPD--SLGLSESDTVL 209
Query: 683 NCLPMYH 689
+PM+H
Sbjct: 210 PVVPMFH 216
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-10
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 8/183 (4%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
++A L G KGDV+A++ N P + G G + +NT L + ++
Sbjct: 41 RLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHS 100
Query: 577 KSKAIIVSALYYP---EIEAIRESIPDVKLFLLDETKPDLPNLS----DLMKTTPASEVK 629
++K + V + E A+ + + ++ + + DL+ +
Sbjct: 101 EAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGD-PDPL 159
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYH 689
P P D + YTSGTTG PK + + L + V LPM+H
Sbjct: 160 PIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFH 219
Query: 690 SAG 692
G
Sbjct: 220 CNG 222
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 135 KRRPNAPCYYFQDE-----TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 189
RP+ F E T + ++A L+D G KGD +A+ N PE V
Sbjct: 21 ADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVI 80
Query: 190 VWLGAAKLGVI 200
L A++G I
Sbjct: 81 ALLATARIGAI 91
|
Length = 528 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 41/202 (20%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E + I L+ G K GD + + ENRPE++ ++ + L ++
Sbjct: 9 KEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEA 68
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++ + + A VK++ +E L + ++V
Sbjct: 69 IEYILNETEISIVFCDA---------------VKVYSFEE----------LEELGKKNKV 103
Query: 629 KPSEPLQTSDSLLYI-YTSGTTGLPKAAIMP--NFKVLLGGQVGKHLLSLGSGDVIYNCL 685
P+ P + L I YTSGTTG PK ++ N + G +G DV + L
Sbjct: 104 PPTPP--KPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYL 161
Query: 686 PMYH-----------SAGGLIG 696
P+ H GG IG
Sbjct: 162 PLAHIFERVVENVCLYIGGRIG 183
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 30/201 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN--TNLKK 566
A++D + IA LQ G GD + L+ ++V + G G I+ L +
Sbjct: 27 AELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGR 85
Query: 567 QP--LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTP 624
L ++ ++A++ ++ + A + + L L+ D +
Sbjct: 86 HLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAA---------DDLAALA 136
Query: 625 ASEVKPSEPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLSLGS 677
A++ P D + ++ YTSG+TG PK ++ N + + L
Sbjct: 137 AAD--WRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI------ARAFGLDP 188
Query: 678 GDVIYNCLPMYHSAGGLIGTI 698
DV + LP+YH GLIG +
Sbjct: 189 DDVGVSWLPLYHDM-GLIGGL 208
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 33/163 (20%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++E +N++AR L+ G GDV+AL+ E PE V L K G +A + P
Sbjct: 16 AELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAG--AAYV-------P 66
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDETKP-----DLPNLSDLMK 621
L + YP E + + D ++ L DE+ D L L +
Sbjct: 67 LDPA---------------YPA-ERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEE 110
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVL 663
A + P P +D L Y+ YTSG+TG PK +P+ V+
Sbjct: 111 ELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 30/226 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +E + +A+ L G +KGD + + N PE+V AK+G I IN +
Sbjct: 47 REFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSE 106
Query: 569 LVHSISTVKSKAIIVSALY----YPEIEAIRESIPDVK------------------LFLL 606
L ++++ KA+I + + Y + + E P++ +FL
Sbjct: 107 LEYALNQSGCKALIAADGFKDSDYVAM--LYELAPELATCEPGQLQSARLPELRRVIFLG 164
Query: 607 DETKPDLPNLSDLM---KTTPASEVKP-SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKV 662
DE P + N +L+ + +E+ L D + YTSGTTG PK A + + +
Sbjct: 165 DEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNI 224
Query: 663 LLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707
L G +G+ + L D + +P+YH G ++G + + G+++
Sbjct: 225 LNNGYFIGEA-MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATM 269
|
Length = 559 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-09
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 117 KRMAATNTTLVSEF-KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGD 175
+R + + ++S +R P+ F D +WT ++D N++A L D G KKGD
Sbjct: 3 ERSTRARRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGD 62
Query: 176 VLALMCENRPEYVGVWLGAAKLGVI 200
+A + N Y +WL A+ G +
Sbjct: 63 RVAALGHNSDAYALLWLACARAGAV 87
|
Length = 523 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 59/208 (28%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D+ +++A L G ++GD +AL+ +N E++ ++L +LG + +N L ++
Sbjct: 5 QELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQE- 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
E++ L + +PDL + ++
Sbjct: 64 ---------------------ELQQ-----------QLADLQPDLDRPATII-------- 83
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGSGDVIYNCLPM 687
+TSG+TG PKA + + L G L L D LP+
Sbjct: 84 ---------------FTSGSTGKPKAVVH-TWGNHLASARGSAENLGLTPDDNWLLSLPL 127
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSA 715
+H GL + +L+ G ++ + KF A
Sbjct: 128 FH-VSGLAIVMRSLLAGGALVLPDKFDA 154
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 93/483 (19%), Positives = 171/483 (35%), Gaps = 59/483 (12%)
Query: 528 KKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY 587
K +A++ ENR E++ ++ GAA G ++ K+ L ++ + I+
Sbjct: 48 SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYK 107
Query: 588 YPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYI-YTS 646
++ + ++ +DE K + + P Y+ +TS
Sbjct: 108 LNDL-----PDEEGRVIEIDEWKRMIEKYLPTYAPIENVQNAP----------FYMGFTS 152
Query: 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706
G+TG PKA + L H + D + + HS L G I L +G +
Sbjct: 153 GSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSL-FLYGAISTLYVGQT 211
Query: 707 IAIRTKFSASNYFRDCAKYKCNAGIY-IGEMCRYLLASKESEADYSHQVVKMIGVGMRGD 765
+ + KF N D + + + +Y + M L +K+I G + +
Sbjct: 212 VHLMRKFI-PNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWE 266
Query: 766 IWAK--FVKRFHVQTIIEFYGATEGN--ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQF 821
AK F + EFYGA+E + LV+ ++ P + H V +
Sbjct: 267 AEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERR-----PNSVGRPFHNVQV--- 318
Query: 822 DLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP 881
I + Q G IG + P F GY +++
Sbjct: 319 ------RICNEAGEEV------QKGE-IGTVYVKSPQF-FMGYIIGGVLAREL------N 358
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
D + D+ DE G++Y R + + G N+ E+E+ + ++ E V GV
Sbjct: 359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVP 418
Query: 942 VGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001
D G + + L L ++ P + I T + KI +++
Sbjct: 419 ----DSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARME 474
Query: 1002 LQN 1004
++
Sbjct: 475 AKS 477
|
Length = 487 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T+ +++DE +N++A L+ G GD +A++ N PE+V L K G
Sbjct: 1 TY--RELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAA 50
|
Length = 412 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 4e-08
Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 5/178 (2%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
++ L+ G GD +A + N ++ + +G + N L + + + ++
Sbjct: 36 RLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHA 95
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQT 636
+ K ++ P +EAIR + V+ F++ + K E +
Sbjct: 96 EDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--EGYLAY-EEALGEEADPVRVPE 152
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV-IYNC-LPMYHSAG 692
+ YT+GTTGLPK + + ++L + + + +PM+H
Sbjct: 153 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 210
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 46/177 (25%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKKQ 567
++ E S + A +L G KG+ + + PE YV LG KLG + + + +
Sbjct: 4 QELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAA-LGTLKLGAVYGPLFSAFGPE 62
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
P+ + ++K +I + PE L + T P+ P
Sbjct: 63 PIRDRLELGEAKVLITT----PE--------------LYERTDPEDP------------- 91
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+LL+ +TSGTTG PK + + V+ +++L L DV Y C
Sbjct: 92 -----------ALLH-FTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDV-YWC 135
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 6e-08
Identities = 53/352 (15%), Positives = 111/352 (31%), Gaps = 32/352 (9%)
Query: 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVK 505
+ LL E + +L + + + +A +
Sbjct: 196 DAPRTSLSALPLLLPSEREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLT- 254
Query: 506 NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565
A++D +N++AR+L G G+ +A++ + E V L K G ++
Sbjct: 255 --YAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYP 312
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625
+ L + + + ++ A L LP L+ +
Sbjct: 313 AERLAYILEDSRPTLLLTQAH-------------------LRVDDVGLPGLALDDALSEI 353
Query: 626 SEVKPSEPLQTSDSLLY-IYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+ P D+L Y IYTSG+TG PK + + + L + D +
Sbjct: 354 PDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLAL 413
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKYKCNAGIYIGEMCRYLL 741
+ A AL+ G+ + + + + + + R LL
Sbjct: 414 ASLSFDASVF-EIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLL 472
Query: 742 ASKESEADYSHQV-VKMIGVG---MRGDIWAKFVKRFHVQTIIE-FYGATEG 788
+ + S ++ + G + + + ++ + + YG TE
Sbjct: 473 LAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA 524
|
Length = 642 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-08
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 1039 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYF 1081
+ G++IG I F GY D + S+KKIL +VFK GD +F
Sbjct: 402 EVGLLIGRI---TDRGPFDGYTDPEASEKKILRDVFKKGDAWF 441
|
Length = 600 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 7e-08
Identities = 124/501 (24%), Positives = 194/501 (38%), Gaps = 76/501 (15%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+D S ++A +L G K GD +A+ E PE + ++L + G + +NT
Sbjct: 32 GDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS-E 627
L + I + ++ + + I + + LD +L + P E
Sbjct: 92 LDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTG--SLLEAAAAAPDDFE 149
Query: 628 VKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
P D L I YTSGTTG K A++ + +L DV+ + LP
Sbjct: 150 TVPRGA----DDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALP 205
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY--LLASK 744
++H+ G + T AL+ G+S+ KF + A + +G Y LL
Sbjct: 206 IFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMPR----ATVMMGVPTFYTRLLQ-- 259
Query: 745 ESEADYSHQVVKMIGVGMR----------GDIWAKFVKRF-HVQTIIEFYGATEGNANLV 793
E + + MR + +F +R H I+E YG TE N N
Sbjct: 260 --EPRLTREAAA----HMRLFISGSAPLLAETHREFQERTGH--AILERYGMTETNMNTS 311
Query: 794 NMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850
N + E G VG P L V++ + DP+TG + GMI
Sbjct: 312 NPYDGERRAGTVG-----FP--LPGVSLR---------VTDPETGA--ELPPGEIGMI-- 351
Query: 851 EIKQSDPSRHFYGY---ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
E+K P+ F GY +K + F+ D +F++GD+ +DE GY++ R
Sbjct: 352 EVK--GPNV-FKGYWRMPEKTAEE-------FRA-DGFFITGDLGKIDERGYVHIVGRGK 400
Query: 908 DTYRWKGENVSTMEVEATISKYLP-YTEFTVYGVKVGDLDGRAGMIAIVDTSNQ-VDLKL 965
D G NV EVE I + LP E V GV D G +V +D
Sbjct: 401 DLIISGGYNVYPKEVEGEIDE-LPGVVESAVIGVPHPDF-GEGVTAVVVPKPGAALDEAA 458
Query: 966 LVQGLDANLPAYARPLFVRIM 986
++ L L + +P V +
Sbjct: 459 ILAALKGRLARFKQPKRVFFV 479
|
Length = 504 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-08
Identities = 115/522 (22%), Positives = 191/522 (36%), Gaps = 111/522 (21%)
Query: 519 ARILQD---DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN-----TNLKKQPLV 570
A +L G+ + +M N + G + A+IN N+
Sbjct: 668 AFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKA 727
Query: 571 HSISTV-KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSD-----LMKTTP 624
+ TV S+A I A P IEA+ I ++ L++ + + L+D L P
Sbjct: 728 AQVKTVLTSRAFIEKARLGPLIEALEFGI---RIIYLEDVRAQI-GLADKIKGLLAGRFP 783
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG-GQVGKHLLSLGSGDVIYN 683
+P D + ++TSG+ G PK ++ + +L QV + D ++N
Sbjct: 784 LVYFCNRDP---DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFN 839
Query: 684 CLPMYHSAGGLIGT---------------------IPALI--LGSSIAIRTKFSASNYFR 720
LP++HS G G IP LI ++I T + Y
Sbjct: 840 ALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGY-- 897
Query: 721 DCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780
A+Y A Y RY+ A E + + Q W + +F ++ I+
Sbjct: 898 --ARY---AHPYDFRSLRYVFAGAEKVKEETRQT------------WME---KFGIR-IL 936
Query: 781 EFYGATEGNANL-VN--MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
E YG TE + +N M N G VG + + L PV I D L
Sbjct: 937 EGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGI-----------DEGGRLF 985
Query: 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
+R P +++G ++ +P +LE P D ++ +GD++ +DE
Sbjct: 986 VR----GPNVMLGYLRAENPG---------------VLE---PPADGWYDTGDIVTIDEE 1023
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG-MIAIVD 956
G++ K R + GE +S VE ++ P + D R G I ++
Sbjct: 1024 GFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIP----DARKGERIILLT 1079
Query: 957 TSNQVDLK-LLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997
T++ L A P + + I + GT KI
Sbjct: 1080 TASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKI 1121
|
Length = 1140 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 145 FQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
F+ +TWT + + + A L D + GD +A+ N E+V +WL +G +
Sbjct: 1 FEGKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAF 60
Query: 204 SNVVWLAQLLGKKMVH 219
N L G ++H
Sbjct: 61 INY----NLSGDPLIH 72
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 21/208 (10%)
Query: 518 IARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA-------LINTNLKKQPLV 570
+A+ L D G G + ++ N E+ + L A + GV +A L++ + K L
Sbjct: 93 LAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAK--LK 150
Query: 571 HSISTVKSKAIIV--SALYYPEIEAIRESIPDVKLFLLDETKPDLPNLS--DLMKTTPAS 626
H VK + + A + + A+ DV + + + +++ DL T P +
Sbjct: 151 HLFDLVKPRVVFAQSGAPFARALAALDLL--DVTVVHVTGPGEGIASIAFADLAATPPTA 208
Query: 627 EVKPSEPLQTSDSLL-YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD----VI 681
V + T D++ Y++TSG+TG+PKA I +++ + L D V
Sbjct: 209 AVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ-RMMCANIAMQEQLRPREPDPPPPVS 267
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAI 709
+ +P H+ GG L G ++ I
Sbjct: 268 LDWMPWNHTMGGNANFNGLLWGGGTLYI 295
|
Length = 624 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 147 DETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
ET T ++D+ SN++AR L G K GD +AL+ N P ++ +WLG AKLG + N
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 3e-07
Identities = 107/443 (24%), Positives = 184/443 (41%), Gaps = 60/443 (13%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVS- 584
G+ K +AL N P++ + GA K G ++ ++ L H +S ++ +I S
Sbjct: 67 GYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSD 126
Query: 585 --ALYYPEIEAIRESIPDVKLFLLDET-----KPDLPNLSDLMKTTPASEVKPSEP---- 633
AL ++ + + + D + D+ P P +D T A VK +
Sbjct: 127 LAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEW 186
Query: 634 --LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV----GKHLLSLGSGDV--IYNCL 685
+ D L YT GTTGLPK A++ + + + GK + GDV + L
Sbjct: 187 PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRA-TRGDVERVICVL 245
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL-LASK 744
P++H + + +L G I++ +F + FRD + + A ++ G ++ LA+
Sbjct: 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKR--ATVFPGVPTMWIALAND 303
Query: 745 ESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE----GNANLVNMDN 797
S + IG G + ++ A F +R + +G TE G + +
Sbjct: 304 PSLEKRDLSSLATIGSGGAPLPVEV-ANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPD 362
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
G++G+ +LP I+ D+V + DP L PG +GE++ P
Sbjct: 363 KPGSIGL---MLPG-------IELDVVS---LDDPTKVL-------PPGE-VGELRIRGP 401
Query: 858 SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
+ GY ++ E + GD+ FL+GD+ MD GY + DR D G NV
Sbjct: 402 NVT-RGYWNRPEESAEAF-----VGDR-FLTGDIGYMDTDGYFFLVDRKKDMIISGGFNV 454
Query: 918 STMEVEATISKYLPYTEFTVYGV 940
+E I ++ E V G+
Sbjct: 455 YPQMIEQAIYEHPGVQEVIVIGI 477
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 3e-07
Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 19/237 (8%)
Query: 477 LEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALM 536
L+ +R + EA R + +A + L A++ A L+ +G + ++
Sbjct: 17 LDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGL----AADLRAQSVSRGSRVLVI 72
Query: 537 CENRPE-YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIR 595
+N PE Y+ V L AKLG I+ + + NL + A +V+ P +
Sbjct: 73 SDNGPETYLSV-LACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVA----PGSKMAS 127
Query: 596 ESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP-LQTSDSLLYIYTSGTTGLPKA 654
++P+ L + D+ ++ + + + + D L I+TSGTTG PKA
Sbjct: 128 SAVPEA-LHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKA 186
Query: 655 AIMPN---FKV--LLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706
++ N F V +L + G + ++ G+ Y+ LP H GGL + L+ G
Sbjct: 187 VLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPLPATH-IGGLWWILTCLMHGGL 241
|
Length = 540 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-07
Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 496 TNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555
T D A + ++L +D+ + ++ R G GD +AL + E+V L A++ +
Sbjct: 38 TADRIAISYRDLARLVDDLAGQLTR----SGLLPGDRVALRMGSNAEFVVALLAASRADL 93
Query: 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN 615
+ ++ L ++ +++ A + + + + ++ P
Sbjct: 94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGT 153
Query: 616 LSDLMKTTPASEVKPSEP--LQTSDSLLYIYTSGTTGLPK------AAIMPNFKVLLGGQ 667
LS + S P L+ D+++ ++T GTTGLPK A I + + ++ G
Sbjct: 154 LSVHLDAATEPTPATSTPEGLRPDDAMI-MFTGGTTGLPKMVPWTHANIASSVRAIITG- 211
Query: 668 VGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRD 721
L D +P+YH G + + L G ++ + R +FSA ++ D
Sbjct: 212 -----YRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDD 262
|
Length = 534 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 141 PCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
+Y +++ T +++ + +N+ A +L+ G GD + L+ + PE V +L K G +
Sbjct: 2 TAFYCGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAV 61
Query: 201 SKLSNV 206
+ N
Sbjct: 62 AVALNP 67
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 47/204 (23%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++ N++A L G KGD + + PE V L AK+G I+ I +
Sbjct: 11 SELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGPDA 70
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++K +I + + + + DL +
Sbjct: 71 VATRLQDAEAKVLITADGFLRRGKRV-----------------DLKD------------- 100
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGDVIYNCLPM 687
D + IYTSGTTG PK + + + + L GD + M
Sbjct: 101 ---------DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM 151
Query: 688 YHSAGGLIG---TIPALILGSSIA 708
G ++G + L+LG++I
Sbjct: 152 ----GWMMGPWLVLGGLLLGATIV 171
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-07
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKK 566
++DE +N++AR L+ G GD +A++ E E V + L K G ++
Sbjct: 3 RELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAI-LAVLKAGAAYVPLDPAYPA 61
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
+ L + ++ ++ A+ + + L ++ +L L D A
Sbjct: 62 ERLAFILEDAGARLLLTD-------SALASRLAGLVLPVILLDPLELAALDD------AP 108
Query: 627 EVKPSEPLQTSDSLLY-IYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
P + D L Y IYTSG+TG PK ++ + ++ L D +
Sbjct: 109 APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFA 168
Query: 686 P 686
Sbjct: 169 S 169
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-07
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVP 303
G LCLA+ D + R ++T + FVDY + + +P DL P
Sbjct: 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48
|
For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal. Length = 48 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-07
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+ D T +++E +N++A L G GD + + NR EYV LGA K
Sbjct: 17 PDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKA 76
Query: 198 GVI 200
+
Sbjct: 77 RAV 79
|
Length = 533 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1023 EFVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 1082
E +R K+ + G+++GEI +D + F GY D + ++KKIL +VFK GD YF
Sbjct: 265 EPIRDANGFCIKVPPGEVGLLLGEI--TDRNP-FDGYTDDEATEKKILRDVFKKGDAYFN 321
Query: 1083 S 1083
+
Sbjct: 322 T 322
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 27/190 (14%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL-GVISAL---------INTNLKK 566
+I L+ G K GD + L E ++V A L G + N + K
Sbjct: 51 RILAGLRALGLKPGDSVILQLERNEDFV-TAFWACVLGGFVPVPVAVPPTYDEPNAAVAK 109
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
L + + S I+ A + +R L+ + + + +L P +
Sbjct: 110 --LRNIWELLGSPVILTDAALVAALAGLRT------RAGLEALR--VLAIEELRSAPPDA 159
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-LGSGDVIYNCL 685
+ P+ P D L + TSG+TG+PK ++ + +L G ++ DV N +
Sbjct: 160 PLHPARPD---DPALLLLTSGSTGVPK-CVVLTHRNILARSAGTVQVNGFTPDDVSLNWM 215
Query: 686 PMYHSAGGLI 695
P+ H GG++
Sbjct: 216 PLDH-VGGIV 224
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
WT ++ E S++ A L+D G +GD +A++ PE V LG KLG +
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAV 51
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 32/118 (27%), Positives = 47/118 (39%)
Query: 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947
SGD + DE G+LYF R + + G VS EVE E +GV L
Sbjct: 400 SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQ 459
Query: 948 RAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
++ ++D L+ A LP Y P + + +A+ KI + L E
Sbjct: 460 AIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAKE 517
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 116/534 (21%), Positives = 197/534 (36%), Gaps = 68/534 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ + ++A L G +A++ N P G G + +N L
Sbjct: 49 AQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPT 108
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK--------LFLLDETKPDLPNLSD-- 618
+ + KS+ ++V ++ E + + + K L ++ + D +L
Sbjct: 109 IAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYAL 168
Query: 619 ----------LMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV 668
L P KP P S+ YTSGTT PK ++ + L
Sbjct: 169 GKGAIEYEKFLETGDPEFAWKP--PADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALS 226
Query: 669 GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK-- 726
+ + G V LPM+H G A + G++I +R + +A + A Y
Sbjct: 227 NALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLR-QVTAKAIYSAIANYGVT 285
Query: 727 --CNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGD---IWAKFVKRF---HVQT 778
C A + + + A K +VV ++ G ++A K F H
Sbjct: 286 HFCAAPVVLNTIVN---APKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYG 342
Query: 779 IIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838
+ E YG + A D+ +P L+ +++ +E + D KT +
Sbjct: 343 LSETYGPSTVCAWKPEWDS-------LPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPV 395
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
G +GEI + GY ++ ++ N +F SGD+ V G
Sbjct: 396 PAD----GKTMGEIVMRG-NMVMKGYLKNPKANEEAFAN------GWFHSGDLGVKHPDG 444
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG-----MIA 953
Y+ KDR+ D GEN+S++EVE + + E +V V D R G +
Sbjct: 445 YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASV----VARPDERWGESPCAFVT 500
Query: 954 IVDTSNQVDLKLLVQGL----DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ ++ D L + + LPAY P V + + T T KI+K L+
Sbjct: 501 LKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSV-VFGPLPKTATGKIQKHVLR 553
|
Length = 567 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 19/206 (9%)
Query: 518 IARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA-------LINTNLKKQPLV 570
IA+ L D G L ++ N E+ + L A GV A L++ + K L
Sbjct: 38 IAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSLLSKDFAK--LR 95
Query: 571 HSISTVKSKAIIVS--ALYYPEIEAIRESIPDVKLFLLD-ETKPDLPNLSDLMKTTPASE 627
H + A+ A + + A+ V + + + L+ T P +
Sbjct: 96 HIFDLLTPGAVFAEDGAAFARALAALGL--AGVPVVAVRGAPGGPAIAFAALLATPPTAA 153
Query: 628 VKPSEPLQTSDSLL-YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL---SLGSGDVIYN 683
V + D++ Y++TSG+TGLPKA I + ++L Q V+ +
Sbjct: 154 VDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH-RMLCANQAMIAQCWPFLTEEPPVLVD 212
Query: 684 CLPMYHSAGGLIGTIPALILGSSIAI 709
LP H+ GG L G ++ I
Sbjct: 213 WLPWNHTFGGNHNFNMVLYNGGTLYI 238
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 33/204 (16%)
Query: 503 TVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562
+ L +Q+ ++A L+D G K GD +A N PE V L A +G I + +
Sbjct: 88 SWAELRSQVA----RLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP 143
Query: 563 NLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDVKLFLL------- 606
+ + ++ ++ K + Y +I I + +P ++ ++
Sbjct: 144 DFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSD 203
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTS-DSLLYI-YTSGTTGLPKAAIMPNFKVLL 664
+ + L+ + P E + D L+I Y+SGTTGLPK +
Sbjct: 204 AQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGA----- 258
Query: 665 GGQVGKHL------LSLGSGDVIY 682
GG + +HL L GD ++
Sbjct: 259 GGTLLQHLKEHGLHCDLRPGDRLF 282
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 1038 DQPGMIIGEIKQSDPSRHFYGYA-DKKESQKKILENVFKPGDKYF 1081
+PG++I +I P F GYA ++ ++KK+L +VFK GD YF
Sbjct: 345 GEPGLLISKITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYF 386
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 88/392 (22%), Positives = 143/392 (36%), Gaps = 66/392 (16%)
Query: 636 TSDSLLYIYTSGTTGLPKAAIMPN---FKVLLGGQ-VGKHLLSL----------GSGDVI 681
++D L +YT GTTG+PK + F+VLLGG +L G+G
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGE-MCR 738
P+ H A G + AL G ++ + KF +R K++ N + +G+ R
Sbjct: 62 LPACPLMHGA-GQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFAR 120
Query: 739 YLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKR-----FHVQTIIEFYGATEGNANLV 793
LL + E+ Y ++ I G +W+ VK+ +++ GA+E
Sbjct: 121 PLLEALEAAGRYDLSSLRAISSS--GAMWSPEVKQGLLELLPNLALVDALGASETGGGGS 178
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
++ GA T ++ D E P + G I
Sbjct: 179 SVSRAGGAS---ATGKFELGPDTVVLDEDGSEVPPGSG------------EVGWI----- 218
Query: 854 QSDPSRHFY---GY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDT 909
+R GY D +++ K E G +Y + GD ++ G + R
Sbjct: 219 ----ARGGRVPLGYYKDPEKTAKTFRE---IDGVRYAVPGDFARVEADGTITLLGRGSVC 271
Query: 910 YRWKGENVSTMEVEATISKYLPYTEFTVYGVKV-GDLDGRAG--MIAIV--DTSNQVDLK 964
GE V EVE + K P V V G D R G ++A+V +DL
Sbjct: 272 INTGGEKVFPEEVEEAL-KAHP----DVADALVVGVPDERWGQRVVAVVQLRAGAGLDLA 326
Query: 965 LLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996
L +L Y P + ++ + + K
Sbjct: 327 ELRDHCRQHLAGYKLPRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 39/240 (16%)
Query: 496 TNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555
T++ A T L Q+ +A L+ G + GD ++ N P+ V L A +G
Sbjct: 109 THEPAPVTWAELRRQV----ASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGA 164
Query: 556 ISALINTNLKKQPLVHSISTVKSKAII-VSALYY--------PEIEAIRESIPDVKL--- 603
I + + + + ++ ++ K + V Y ++ +R+ +P ++
Sbjct: 165 IWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVH 224
Query: 604 --FLLDETK--PDLPNLSDLMKTTPASEVKPS--EPLQTSDSLLYIYTSGTTGLPKAAIM 657
+L P + DL T A++ E L L +++SGTTGLPK +
Sbjct: 225 IPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVH 284
Query: 658 PNFKVLLGGQVGKHL------LSLGSGDVIYNCLPMYHSAGGLIGT--IPALILGSSIAI 709
GG + +HL LG GD ++ Y + G ++ + L G+++ +
Sbjct: 285 SA-----GGTLVQHLKEHGLHCDLGPGDRLF----YYTTTGWMMWNWLVSGLATGATLVL 335
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY +++++ ++ + D +F +GD+ +DE G+LY DR D GEN+ E+
Sbjct: 345 GYLNREDATRETFQ------DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEI 398
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMI--AIVDTSNQVDLKLLVQGLDANLPAYARP 980
E + + E V GV D + G + A V S +V + L + L Y P
Sbjct: 399 EEVLLSHPGVAEAGVVGVP----DDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVP 454
Query: 981 LFVRIMKAIEMTGTFKIKKIQLQNE 1005
++ + + K+ + +L+
Sbjct: 455 KRFYFVEELPRNASGKLLRHELKQL 479
|
Length = 483 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ V+DE GY+ DR D + GE +S++E+E + + E V GV
Sbjct: 396 DGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVP- 454
Query: 943 GDLDGRAGM--IAIV--DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998
+ G +A+V +V + L++ L + + P V + I T K
Sbjct: 455 ---HEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFD 511
Query: 999 KIQL 1002
K L
Sbjct: 512 KKAL 515
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
D + ++GD+ DE GY ++ R+ D G N++ EVE + + E V GV
Sbjct: 363 RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVP 422
Query: 942 VGDLDGRAGMIA---IVDTSNQVDLKLLVQGLD----ANLPAYARPLFVRIMKAIEMTGT 994
D G I IV +LL + L A + Y P + + A+ T T
Sbjct: 423 ----DEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQT 478
Query: 995 FKIKKIQLQ 1003
KI++ +L+
Sbjct: 479 GKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-06
Identities = 21/89 (23%), Positives = 34/89 (38%)
Query: 111 RAILGTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDG 170
L + +R P+ + T T ++DE SN +AR L G
Sbjct: 36 DNGLRLAADIRRYGPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALG 95
Query: 171 FKKGDVLALMCENRPEYVGVWLGAAKLGV 199
+ GD +A++ N +V A K+G
Sbjct: 96 VRAGDGVAVLARNHRGFVLALYAAGKVGA 124
|
Length = 549 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 137 RPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196
R + Y+ D + T ++ E N+ L++ G ++ + + L+ + PE+ + GA K
Sbjct: 18 RGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIK 77
Query: 197 LGVISKLSN 205
+G + N
Sbjct: 78 IGAVPVPIN 86
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY E+ ++ F G +F SGD+ V+ GY+ KDR+ D GEN+S++EV
Sbjct: 386 GYYKNPEATEE----AFAGG--WFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEV 439
Query: 923 EATISKY 929
E + K+
Sbjct: 440 EGVLYKH 446
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 133 SVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVW 191
+ P+A F D + T ++D +NK+A L G + GD++AL E P YV +
Sbjct: 1 RAQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAI- 59
Query: 192 LGAAKLG 198
L K G
Sbjct: 60 LAVLKAG 66
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 129/568 (22%), Positives = 205/568 (36%), Gaps = 135/568 (23%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY-VGVWLGAAKLGVISALINTNLKKQ 567
++DE S +A LQ G KG +A+M N +Y V + AA L ++N N
Sbjct: 52 GELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI---AAVLRAGYVVVNVNPLYT 108
Query: 568 P--LVHSISTVKSKAIIVSALYYPEIEAI--RESIPDVKL---------------FLLDE 608
P L H + ++AI+V + ++ + + ++ V + F++
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRR 168
Query: 609 TKPDLPNLS--------DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNF 660
K +P S D + KP L D YT GTTG+ K A + +
Sbjct: 169 VKKMVPAWSLPGHVRFNDALAEGARQTFKP-VKLGPDDVAFLQYTGGTTGVSKGATLLHR 227
Query: 661 KVLLGGQVGKHLLSLGSG--------DVIYNC-LPMYHSAGGLIGTIPALILGSSIAIRT 711
++ V + L + + C LP+YH I AL + + +RT
Sbjct: 228 NIV--ANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYH--------IFALTVCGLLGMRT 277
Query: 712 KFSASNYF----RDCA-------KYKCNAGIYIGEMCRYLLASKE-SEADYSHQVVKMIG 759
N RD KY+ + + + LL + + + D+S +V G
Sbjct: 278 --GGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVA-NG 334
Query: 760 VGMRGDIWAKFVKRFHVQT---IIEFYGATE----GNANLVNMDNTEGAVGIIPTLLPTF 812
GM + +R+ T I E YG +E N V+ G +G+
Sbjct: 335 GGMA--VQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGL-------- 384
Query: 813 LHPVAIIQFDLVENQPIRDPKTGLCIRCK--YNQPGMIIGEIKQSDPSRHFYGYADKKES 870
P+ P T + IR + P GEI P + GY ++ +
Sbjct: 385 ---------------PL--PSTEVSIRDDDGNDLPLGEPGEICIRGP-QVMAGYWNRPDE 426
Query: 871 QKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930
K++ D +F +GD+ VMDE GY DR D G NV E+E ++ +
Sbjct: 427 TAKVMT-----ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHP 481
Query: 931 PYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLD-------------ANLPAY 977
E GV D +G +KL V D L Y
Sbjct: 482 GVLEVAAVGVP----DEHSGEA----------VKLFVVKKDPALTEEDVKAFCKERLTNY 527
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
RP FV + T KI + +L++
Sbjct: 528 KRPKFVEFRTELPKTNVGKILRRELRDG 555
|
Length = 557 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 8e-06
Identities = 103/510 (20%), Positives = 184/510 (36%), Gaps = 77/510 (15%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++ + +AR L DG G + +MC N +V LG I+T + L
Sbjct: 65 ELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDAL 124
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
++ ++ + I +++ ++D T +E
Sbjct: 125 AAALRAHHISTVVADNEFAERIAGADDAV-----AVID-------------PATAGAEES 166
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAI-MPNFKVLLGGQVGKHLLS---LGSGDVIYNCL 685
P + + + TSGTTG PK P + +G V +L L +G I +
Sbjct: 167 GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVG--VWVTILDRTRLRTGSRISVAM 224
Query: 686 PMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEM-CRYL-LA 742
PM+H G G++ + + LG ++ F A + ++ +A + + R L L
Sbjct: 225 PMFHGLGLGML--MLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRF---HVQTIIEFYGATE-------GNANL 792
+ + Q+ ++ G R D +RF + + YG+TE A+L
Sbjct: 283 PRVRARNPLPQLRVVMSSGDRLD--PTLGQRFMDTYGDILYNGYGSTEVGIGALATPADL 340
Query: 793 VNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852
+ T G P PV I+ + N+P+ TG + GE+
Sbjct: 341 RDAPETVGK--------PVAGCPVRILDRN---NRPVGPRVTGRI---------FVGGEL 380
Query: 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
+ Y D K +++ + GD M +D G L+ R D
Sbjct: 381 AGT-------RYTDG--GGKAVVDGMTSTGD-------MGYLDNAGRLFIVGREDDMIIS 424
Query: 913 KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA 972
GENV VE ++ + + V GV R ++ + VD L L
Sbjct: 425 GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKD 484
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ + +P + I+ +I T K+ + +L
Sbjct: 485 RVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 9e-06
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 144 YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
E T +++ SN++A L+ G ++GDV+A++ EN PE+ V+ A
Sbjct: 6 APSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAA 56
|
Length = 502 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-06
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944
+F SGD++ DE GY++ DR D GEN+ EVE ++ + E V +G
Sbjct: 400 WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAV----IGR 455
Query: 945 LDGRAG-----MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
D + G + A+ + + L+ L + L L Y P + I+ A+ K+ K
Sbjct: 456 ADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLK 515
Query: 1000 IQLQ 1003
+L+
Sbjct: 516 TELR 519
|
Length = 542 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 9e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A + D + T +++E +N++AR L+ G GDV+AL+ E PE V L K
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 198 G 198
G
Sbjct: 61 G 61
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585
G K + +A+ + R E++ G + + I +L ++ L HS++ + +I +
Sbjct: 127 GHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDS 186
Query: 586 LYYPEIEAIRESIPDVK-LFLLDETKPDLPN------------LSDLMKTTPASEVKPSE 632
++ I + VK + +D+ D + S++ K + V P
Sbjct: 187 KQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDL 246
Query: 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL-LGGQVGKHLLSLGSGDVIYNCLPMYH-- 689
P +D + +YTSG+TGLPK +M + ++ V + LG DV LP+ H
Sbjct: 247 PSP-NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHIL 305
Query: 690 ---------SAGGLIGTIPALIL 703
+ G IG L L
Sbjct: 306 ELAAESVMAAVGAAIGYGSPLTL 328
|
Length = 696 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 60/237 (25%), Positives = 92/237 (38%), Gaps = 39/237 (16%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A TT L Q+ + A L+ G + GD +A++ N P+++ + +LG +
Sbjct: 56 ATTTYAELGKQVR----RAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVE 111
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK--P------ 611
N L H ++ IV P +E +R + P + ++ P
Sbjct: 112 HNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 612 -DLPNLSDLMK-----TTPASEVKPSEPLQTS-----------------DSLLYIYTSGT 648
LP + L K T PA P E L + D L +YTSGT
Sbjct: 172 LRLP-IPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGT 230
Query: 649 TGLPKAAIMPNFKVLLGGQVGKHLLS-LGSGD-VIYNCLPMYHSAG-GLIGTIPALI 702
TG PK A + + + GK + LG G + LPM+H+ G L T+ I
Sbjct: 231 TGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSI 287
|
Length = 573 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY D E F+ G +F SGD+ VMDE GY+ DR D + GENV++ EV
Sbjct: 380 GYWDDPEKT----AEAFRGG--WFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREV 433
Query: 923 EATI 926
E +
Sbjct: 434 EEAL 437
|
Length = 523 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ TL + R P+ T +++D +++A L G GD + +
Sbjct: 13 GDQTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQL 72
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+V ++ KLG I
Sbjct: 73 PNVAEFVILYFALFKLGAI 91
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY D+ E + L+ + ++ SGD+ MDE GY+ R D GEN+S+
Sbjct: 392 FMGYLDEPELTARALDE-----EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSR 446
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAG-----MIAIVDTSNQVDLKLLVQGL-DANL 974
EVE + ++ + V V D R G + + + + L+ +V +
Sbjct: 447 EVEDILLQHPKIHDACV----VAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRV 502
Query: 975 PAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
Y P + ++ + T + KI+K L+ +
Sbjct: 503 AKYKYPEHIVVIDKLPRTASGKIQKFLLRKD 533
|
Length = 547 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 20/146 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ +N IA L+ G GD++A++ E + LG G I+ + +
Sbjct: 16 GELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPAER 75
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
++ ++A++ + L + D+ P V
Sbjct: 76 RAAILARAGARAVLTDP------GLAQPEEAPDLLVVADDAAAAES------PAPPPPRV 123
Query: 629 KPSEPLQTSDSLLY-IYTSGTTGLPK 653
P D L Y I+TSG+TG PK
Sbjct: 124 DP-------DDLAYVIFTSGSTGEPK 142
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 87/423 (20%), Positives = 174/423 (41%), Gaps = 39/423 (9%)
Query: 515 SNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIS 574
+ + A+ L+ G +KG V+ ++ N EY V LG G + + N + +
Sbjct: 65 TRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAE 124
Query: 575 TVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK-PDLPNLSDLMKTTP-ASEVKPSE 632
+K I+ + Y +++ + + + +L E K N +L++ A + +E
Sbjct: 125 AAGAKLIVTNDTNYGKVKGL-----GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNE 179
Query: 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS---GDVI-YNCLPMY 688
+ +D ++SGTTG+ K ++ + ++ + L S+G G V+ +P +
Sbjct: 180 EILQTDLCALPFSSGTTGISKGVMLTHRNLV--ANLCSSLFSVGPEMIGQVVTLGLIPFF 237
Query: 689 HSAGGLIGTIPALILGS-SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK-ES 746
H G+ G A + + + ++F + + + + + L+ +
Sbjct: 238 HIY-GITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE 296
Query: 747 EADYSH---QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVG 803
E D S Q + + ++ F +F + E YG TE + + + E G
Sbjct: 297 EFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHG 356
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
I F+ P ++F DP TG + N PG + +S Y
Sbjct: 357 IAKKNSVGFILPNLEVKF--------IDPDTGRSL--PKNTPGEL---CVRSQCVMQGY- 402
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
Y +K+E+ + I E D + +GD+ +D+ G ++ DR + ++KG V+ E+E
Sbjct: 403 YNNKEETDRTIDE------DGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELE 456
Query: 924 ATI 926
A +
Sbjct: 457 AIL 459
|
Length = 546 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 123/502 (24%), Positives = 195/502 (38%), Gaps = 115/502 (22%)
Query: 497 NDAAATTVKNLEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGV 555
N T + LE E S A LQ+ G KKGD +ALM N +Y G + G+
Sbjct: 44 NMGEVMTFRKLE----ERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGM 99
Query: 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET------ 609
I +N + L H ++ +KAI++ + + +E + P VK +L
Sbjct: 100 IVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTP-VKHVILTRMGDQLST 158
Query: 610 ------------------KPDLPNL----SDLMKTTPASEVKPSEPLQTSDSLLYI-YTS 646
K LP+ S L K VKP + L ++ YT
Sbjct: 159 AKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPE---LVPEDLAFLQYTG 215
Query: 647 GTTGLPKAAIMPNFKVLLGGQVGKH----LLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702
GTTG+ K A++ + +L + K LL G V+ LP+YH I AL
Sbjct: 216 GTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV-TALPLYH--------IFALT 266
Query: 703 L---------GSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSH 752
+ G ++ I + ++ KY A + + LL ++E E D+S
Sbjct: 267 VNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSS 326
Query: 753 QVVKM-IGVGMR-----GDIWAKFVKRFHVQTIIEFYGATEGN----ANLVNMDNTEGAV 802
+K+ +G GM + W K Q ++E YG TE + N ++D G++
Sbjct: 327 --LKLSVGGGMAVQQAVAERWVKLTG----QYLLEGYGLTECSPLVSVNPYDLDYYSGSI 380
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQ----PIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
G+ PV + LV++ P +P GE+ P
Sbjct: 381 GL----------PVPSTEIKLVDDDGNEVPPGEP-----------------GELWVKGP- 412
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
+ GY + E+ ++++ D + +GD+ VMDE G+L DR D G NV
Sbjct: 413 QVMLGYWQRPEATDEVIK------DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVY 466
Query: 919 TMEVEATISKYLPYTEFTVYGV 940
E+E + + E GV
Sbjct: 467 PNEIEDVVMLHPKVLEVAAVGV 488
|
Length = 560 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 113/552 (20%), Positives = 207/552 (37%), Gaps = 100/552 (18%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTN--LK 565
A+++ +S A LQ GD +A+ N +Y GA + G+I ++NTN
Sbjct: 53 AELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI--VVNTNPLYT 110
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK--------------- 610
+ + H ++A++ ++ ++ E +PD + L E K
Sbjct: 111 AREMRHQFKDSGARALVYLNMFGKLVQ---EVLPDTGIEYLIEAKMGDLLPAAKGWLVNT 167
Query: 611 ---------PD--LPN---LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
P LP ++ +KP P+ D + YT GTTGL K A+
Sbjct: 168 VVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAM 226
Query: 657 ---------MPNFKVLLG--GQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705
M + L G G+ L+ G +V+ LP+YH + ++ G+
Sbjct: 227 LTHGNLVANMLQVRACLSQLGPDGQPLMKEGQ-EVMIAPLPLYHIYAFTANCMCMMVSGN 285
Query: 706 -SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSHQVVKMIG---- 759
++ I + ++ K++ +A + + + L+ + D+S + G
Sbjct: 286 HNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTAL 345
Query: 760 VGMRGDIWAKFVKRFHVQTIIEFYGATE----GNANLVNMDNTEGAVGIIPTLLPTFLHP 815
V + W + TI+E YG TE + N G VGI P
Sbjct: 346 VKATAERWEQLTG----CTIVEGYGLTETSPVASTNPYGELARLGTVGI----------P 391
Query: 816 VAIIQFDLVENQPIRDP---KTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQK 872
V ++++ P + LCI+ P ++ GY + E+
Sbjct: 392 VPGTALKVIDDDGNELPLGERGELCIK----GPQVM-------------KGYWQQPEATA 434
Query: 873 KILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPY 932
+ L+ + +F +GD+ V+D G++ DR D G NV E+E + +
Sbjct: 435 EALD-----AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKV 489
Query: 933 TEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMT 992
GV + G A + +V + ++ L N Y P + + ++ MT
Sbjct: 490 ANCAAIGVP-DERSGEAVKLFVVARDPGLSVEELKAYCKENFTGYKVPKHIVLRDSLPMT 548
Query: 993 GTFKIKKIQLQN 1004
KI + +L++
Sbjct: 549 PVGKILRRELRD 560
|
Length = 562 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
+++A +L+ G KGD + + PE V L A++G I +++ + L I
Sbjct: 84 SRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRIDD 143
Query: 576 VKSKAIIVSALY---------YPEI--EAIRESI-PDVKLFLLDETKPDLP--------- 614
K K +IV+A + Y + +A+ S K+ +L+ + +P
Sbjct: 144 AKPK-LIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILN--RGQVPAPLKPGRDL 200
Query: 615 NLSDLMKTTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLL 673
+ ++LM + P E S LYI YTSGTTG PK + G + +
Sbjct: 201 DWAELMAKARPVDCVPVE----STDPLYILYTSGTTGKPKGVVRDT---------GGYAV 247
Query: 674 SLG-SGDVIYNCLP 686
+L S IY P
Sbjct: 248 ALKWSMRNIYGIKP 261
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
TWT ++ N++A L G KGD + + PE V L AK+G I
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 33/237 (13%)
Query: 768 AKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQ 827
+RF II YG TE AV + P + + + +
Sbjct: 232 KALRRRFPNARIINLYGPTE----------ATVAVTAYE------VTPEPLSRNEPL--- 272
Query: 828 PIRDPKTGLCIRCKYN------QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP 881
PI PK GL R P GE+ + P GY + E K
Sbjct: 273 PIGYPKPGL--RALILDEDGRPVPPGEEGELVIAGPQV-SPGYLNNPEKTAKAFF--QDE 327
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
G +++ +GD++ +++ G L + R + G + E+EA + LP E V +
Sbjct: 328 GQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRA-LPGVEEAVV-LP 385
Query: 942 VGDLDGRAGMIAIVDT-SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997
V + ++A V +D K L + L LP Y P + ++ + KI
Sbjct: 386 VPKGEKVVRLVAFVVGKEGALDTKALKKELKKRLPPYMIPRRFVYLDSLPLNANGKI 442
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 17/155 (10%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+A L+ G GD +A N PE V L A LG I + + + Q ++ +
Sbjct: 126 ALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQI 185
Query: 577 KSKAIIVSALYY---------PEIEAIRESIPDVKLFLL------DETKPDLPNLSDLMK 621
+ K +I Y ++ +R ++P ++ ++ LP
Sbjct: 186 EPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWED 245
Query: 622 TTPASEVKPSEPLQTS-DSLLYI-YTSGTTGLPKA 654
+E E D L+I Y+SGTTGLPK
Sbjct: 246 FLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKC 280
|
Length = 655 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
+ A +L+ G KKGD +A+ PE L A++G I +++ + L I+
Sbjct: 89 CRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSAEALADRIND 148
Query: 576 VKSKAIIVSALYY---------PEIEAIRESIPDVKLFL-LDETKPDLPN-------LSD 618
KSK +I + Y ++ E P V+ + + T ++P D
Sbjct: 149 AKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPMVEGRDVWWHD 208
Query: 619 LMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
LM +P EP+ D L +YTSG+TG PK
Sbjct: 209 LMAKASP-YCEP-EPMDAEDPLFILYTSGSTGKPK 241
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 605 LLDETKPDLPNLSDL-MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL 663
L D L + ++ S + EP + +L+ +YTSGTTG PK ++
Sbjct: 96 WLGPAPDDPAGLPHVPVRLHARSWHRYPEPDPDAPALI-VYTSGTTGPPKGVVLSR---- 150
Query: 664 LGGQVGKHLLSLG------SGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717
+ L +L + DV+ + LP++H G ++G + L +G+ + +
Sbjct: 151 --RAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA 208
Query: 718 YFRDCA 723
Y + +
Sbjct: 209 YAQALS 214
|
Length = 471 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 139 NAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198
+ + T ++D S ++A+ L G GD +A++ EYV ++L + G
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60
Query: 199 VI 200
+
Sbjct: 61 GV 62
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 131 KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190
K+ P+ F+++ T ++ E +A L G KKGD +AL+ +N E + V
Sbjct: 9 KQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILV 68
Query: 191 WLGAAKLGVISKLSNV 206
+LG ++ L N
Sbjct: 69 IHALQQLGAVAVLLNT 84
|
Length = 483 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 94/439 (21%), Positives = 161/439 (36%), Gaps = 58/439 (13%)
Query: 529 KGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYY 588
K DV++++ N P + G + INT L + + K K + V +
Sbjct: 63 KNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE 122
Query: 589 PEIEAIRESIPDVKLFLLDETKPDLP----NLSDLMKTTPASE------VKPSEPLQTSD 638
P + + +++ +LP + D K + E ++ EP +
Sbjct: 123 PLAREVLHLLSS------EDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPSLV 176
Query: 639 SLLYI-----------YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPM 687
+ ++ YTSGTT PK ++ + L +G+ V LPM
Sbjct: 177 ARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPM 236
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
+H G A G+S+ +R +A +++ + + + LL K +
Sbjct: 237 FHCNGWTFTWGTAARGGTSVCMR-HVTAPEIYKNIEMHNVTHMCCVPTVFNILL--KGNS 293
Query: 748 ADYSHQ---VVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804
D S + V + G K V+R Q ++ YG TE ++ + +
Sbjct: 294 LDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQ-VMHAYGLTEATGPVLFCEWQDEW--- 349
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPK-TGLCIRCKYNQP-----GMIIGEIKQSDPS 858
LP Q +L Q + + ++ K Q G +GEI S
Sbjct: 350 --NRLPENQ------QMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSS 401
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
GY K FK G + +GD+ V+ G++ KDR+ D GEN+S
Sbjct: 402 I-MKGYL----KNPKATSEAFKHG--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENIS 454
Query: 919 TMEVEATISKYLPYTEFTV 937
++EVE + KY E V
Sbjct: 455 SVEVENVLYKYPKVLETAV 473
|
Length = 579 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 112/543 (20%), Positives = 211/543 (38%), Gaps = 87/543 (16%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTN--LK 565
++ + S A LQ K GD +A+ N +Y GA + G+I ++NTN
Sbjct: 53 GELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI--VVNTNPLYT 110
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEIE------AIRESI--------PDVKLFLLDETK- 610
+ + H + +KA++ A E ++ I P +K L++
Sbjct: 111 AREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVK 170
Query: 611 -----------PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI--- 656
P +D + V + P Q D + YT GTTG+ K A+
Sbjct: 171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANP-QADDVAVLQYTGGTTGVAKGAMLTH 229
Query: 657 ------MPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS-SIAI 709
M + L+G + + +++ LP+YH + +++G+ +I I
Sbjct: 230 RNLVANMLQCRALMGSNLNE------GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILI 283
Query: 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA-DYSHQVVKMIGVGMRGDI-W 767
++ K+K + + + + L ++ D+S + + G GM +
Sbjct: 284 SNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSG-GMALQLAT 342
Query: 768 AKFVKRFHVQTIIEFYGATEGN--ANLVNMDNTE-GAVGI-IPTLLPTFLHPVAIIQFDL 823
A+ K I E YG TE + ++ + G +GI +P+ L +I D
Sbjct: 343 AERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL------CKVID-DD 395
Query: 824 VENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGD 883
P+ + LC++ P ++ GY + E+ +IL++ D
Sbjct: 396 GNELPLGEVGE-LCVK----GPQVM-------------KGYWQRPEATDEILDS-----D 432
Query: 884 KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVG 943
+ +GD+ ++ E GY+ DR D G NV E+E ++ + GV
Sbjct: 433 GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVP-D 491
Query: 944 DLDGRAGMIAIVDTSNQ-VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ G A + +V + + + +++ + ANL Y P V + T KI + +L
Sbjct: 492 EKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRREL 551
Query: 1003 QNE 1005
++E
Sbjct: 552 RDE 554
|
Length = 562 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++ Q+ + SN++A L+ G ++GD + LM N PE L A KLG +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAV 51
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 886 FLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945
+ S D + DE GY + RT D G + T E+E ++S + E V GV +L
Sbjct: 474 YSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVH-DEL 532
Query: 946 DGRAGMI-AIVDTSNQVD--------LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996
G+ ++ AI+ S+ ++ + L A ARP V + A+ T + K
Sbjct: 533 KGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGK 592
Query: 997 I--KKIQLQNEGFDPSQIS 1013
+ + IQ EG DP ++
Sbjct: 593 LLRRSIQALAEGRDPGDLT 611
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T + + + ++A+ L+ G K+GDV+AL+ N E+ V+LG G I
Sbjct: 12 TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGI 61
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
E +T Q+ + SN++A L++ G ++GD + + PE L KLG +S
Sbjct: 5 EEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVS 58
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
TL ++ +R + Y F D+ T +++ + A L G KGD +A+ N
Sbjct: 6 TLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNS 65
Query: 185 PEYVGVWLGAAKLG 198
P +V LGA K G
Sbjct: 66 PHWVIAALGALKAG 79
|
Length = 513 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199
E + +Q+D+ S +AR+L D G + GDV+AL+ +N PE + V A + G+
Sbjct: 23 EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGL 74
|
Length = 501 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 137 RPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAA 195
R N PC+ +ETWT + + + +N+IA +L +D G G+ + L N P V WL
Sbjct: 48 RGNRPCFRTFEETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVL 107
Query: 196 KLGVI 200
K G I
Sbjct: 108 KAGAI 112
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV----IS---ALINTNLKKQPL 569
IA+ L D G L ++ N E+ + L A GV +S +L++ + K L
Sbjct: 81 AIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGK--L 138
Query: 570 VHSISTVKSKAIIVS--ALYYPEIEAIRESIPDVKLFLLDETKPDLPNLS--DLMKTTPA 625
H + + + A + + A+ DV++ + P L+ T P
Sbjct: 139 RHVLELLTPGLVFADDGAAFARALAAVVP--ADVEVVAVRGAVPGRAATPFAALLATPPT 196
Query: 626 SEVKPSEPLQTSDSLL-YIYTSGTTGLPKAAI 656
+ V + D++ +++TSG+TGLPKA I
Sbjct: 197 AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVI 228
|
Length = 614 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 20/156 (12%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
+ A +L+ G KKGD +A+ PE L A++G I +++ + L I+
Sbjct: 99 CRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRIND 158
Query: 576 VKSKAII----------VSALYYPEIEAIRESIPDVKLFL-LDETKPDLP-------NLS 617
+K +I V L EA+ + V+ L + T +P
Sbjct: 159 AGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWH 218
Query: 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
DLM A +P EP+ + D L +YTSG+TG PK
Sbjct: 219 DLMAKASA-YCEP-EPMDSEDPLFILYTSGSTGKPK 252
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 33/152 (21%)
Query: 507 LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566
L A+ID+ A G +G +AL +N PE + +L + G +N L +
Sbjct: 34 LCARIDQL----AAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ 89
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
P +E + S+ + L+ E + L+ L
Sbjct: 90 ----------------------PLLEELLPSL-TLDFALVLEGENTFSALTSLH----LQ 122
Query: 627 EVKPSEPLQTSDSLLY--IYTSGTTGLPKAAI 656
V+ + + L TSG+TGLPKAA+
Sbjct: 123 LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAV 154
|
Length = 458 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 130 FKKSVKRRPNAPC--YYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 187
F +V R P+ Q +T +Q+ + +++AR L G + GD + + N E+
Sbjct: 24 FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83
Query: 188 VGVWLGAAKLGVI 200
+ A++G I
Sbjct: 84 LLTQFATARIGAI 96
|
Length = 558 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVIS 201
++ +++ E S + A +L G KG+ + + PE YV LG KLG +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAA-LGTLKLGAVY 52
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWK-------GENVSTMEVEATISKYLPYTEF 935
D ++ +GD+ +DE GYLY R K G NVS VE+ + + +
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRK------KNLIITSFGRNVSPEWVESELQQAPAIAQA 378
Query: 936 TVYGVKVGDLDGRAGMIAIVDTSNQV---DLKLLVQGLDANLPAYAR 979
V+G D + ++A++ + + L+ VQ ++A LP YAR
Sbjct: 379 VVFG------DAQPFLVALIVPAPNISDDQLEAAVQQINAQLPDYAR 419
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 33/271 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ ++A L G +GD +A++ N P V G G + +NT L
Sbjct: 47 AETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAAS 106
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN---LSDLMKTTPA 625
+ + ++K +IV + +P K ++D P+ P + L
Sbjct: 107 IAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFL 166
Query: 626 SEVKPSEPLQTS----DSLLYIYTSGTTGLPK--------AAIMPNFKVLLGGQVGKHLL 673
+ P D++ YTSGTTG PK A + +L G + KH +
Sbjct: 167 ASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWG-MPKHPV 225
Query: 674 SLGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK----CN 728
L + LPM+H G T+ A G+++ +R K F ++ C
Sbjct: 226 YLWT-------LPMFHCNGWCFPWTVAARA-GTNVCLR-KVDPKLIFDLIREHGVTHYCG 276
Query: 729 AGIYIGEMCRYLLASKESEADYSHQVVKMIG 759
A I + + A E A H V M+
Sbjct: 277 APIVLSALIN---APAEWRAGIDHPVHAMVA 304
|
Length = 545 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 146 QDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++E T KQ+ EY +K+A L + KKG+ +A++ +N EY+ + AK+ I
Sbjct: 24 EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECI 79
|
Length = 496 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 849 IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGD 908
GEI PS F GY Q + + + G +F +GD+ +D GYLY R D
Sbjct: 260 DGEILVRGPSL-FLGYLP----QGGLTPPLDEDG--WFHTGDLGYLDAEGYLYVLGRRDD 312
Query: 909 TYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM--IAIVDTSN-QVDLKL 965
GEN+ E+EA + ++ E V GV D G +A V ++ V ++
Sbjct: 313 LIISGGENIYPEEIEAVLLQHPAVEEAAVVGVP----DDEWGQRPVAFVVPNDDPVSVEE 368
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
L L L Y RP + + + KI + L+
Sbjct: 369 LQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 98 TLPRDVNIIYSLSRAILGTKRMAA-TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQID 156
T + ++ R + T+ F++ P+A + T ++D
Sbjct: 200 TSLSALPLLLPSEREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELD 259
Query: 157 EYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198
+N++AR+L G G+ +A++ + E V L K G
Sbjct: 260 ARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAG 301
|
Length = 642 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A D T + ++DE SN++A L+ G GD + ++ E + V L K
Sbjct: 1 PDAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60
Query: 198 G 198
G
Sbjct: 61 G 61
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 135 KRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
+ RP P F T ++DE S++ A +L+ G GD +A+ N P++ V+ G
Sbjct: 44 RERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI 103
Query: 195 AKLGVI 200
KLG +
Sbjct: 104 LKLGAV 109
|
Length = 567 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
+T ++ S ++A L G ++GDV+ L+ N PE+V +LGA++ G ++ +N
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTAN 106
|
Length = 537 |
| >gnl|CDD|197660 smart00333, TUDOR, Tudor domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308
G AR +D Y R ++ +L + F+DY +++ +P DL +
Sbjct: 6 GDKVAARWEDGEWY-RARIVKVDGEQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57
|
Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished). Length = 57 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 879 FKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVY 938
Y+ +GD DE GYL+ RT D G +ST E+E ++ K+ E V
Sbjct: 456 LNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVV 515
Query: 939 GVKVGDLDGRA--GMIAIVDTSNQVDLKL---LVQGLDANLPAYARPLFVRIMKAIEMTG 993
GV+ +L G+ G++ + D +L +V + + A V +K + T
Sbjct: 516 GVR-DELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTR 574
Query: 994 TFKI-----KKIQLQNEGFDPSQISDD 1015
+ KI +KI + DPS I D
Sbjct: 575 SGKILRRTLRKIADGEDYKDPSTIEDP 601
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E R L + G KG +A+ E R E++ G +++A + NL +
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184
Query: 569 LVHSISTVKSKAIIVSALYYPE-IEAIRES-IPDVKLFLLDETKPD-------LPNLSDL 619
L +++ + KAI+ + P + ++ +P+ + LD L +D+
Sbjct: 185 LAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPASVDTEGCRLVAWTDV 244
Query: 620 MKT--TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
+ + S + P D L +YTSGTTG PK +
Sbjct: 245 VAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVM 283
|
Length = 700 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 116 TKRMAATNTTLVSEFKKSVKRRPNAPCYY------FQDETWTIKQIDEYSNKIARILQDD 169
A TL + VK RP+ ++ T+ +++ E +A L
Sbjct: 8 AWEDVAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITY--RELYERVRALASGLLSL 65
Query: 170 GFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
G GD +A+ NRPE+ L LG +S
Sbjct: 66 GIPAGDRVAIFAANRPEWAIADLAILALGAVS 97
|
Length = 613 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 RPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGD-VLALMCENRPEYVGVWLGAA 195
+P+AP F T T +++D+ +A L G GD VL LM NR E+V L A
Sbjct: 30 QPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILML-NRTEFVESVLAAN 88
Query: 196 KLGVIS 201
LG I+
Sbjct: 89 MLGAIA 94
|
Length = 542 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 54/151 (35%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKKQ 567
A++D +NK+A L G + GD++AL E P YV + L K G I+ + +
Sbjct: 21 AELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAI-LAVLKAGAAYVPIDPSAPVE 79
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
L I + ++ S
Sbjct: 80 RLQFIIEDSGATVVLTS------------------------------------------- 96
Query: 628 VKPSEPLQTSDSLLY-IYTSGTTGLPKAAIM 657
+ D Y IYTSG+TG PK ++
Sbjct: 97 --------SPDDPAYVIYTSGSTGKPKGVVI 119
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-04
Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 25/216 (11%)
Query: 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDV-TYSRFKQEASNARSTNDAAATTV 504
+D + + E ALLD E + E + R A A +A A
Sbjct: 1968 EDAQAALGELALLDAGERQRILADWDRTPEAYPRGPGVHQRI---AEQAARAPEAIAVVF 2024
Query: 505 KNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561
+ A++D +N++A L+ G +A+ E E V L K G ++
Sbjct: 2025 GDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLD 2084
Query: 562 TNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETKPDLPNLSDLM 620
N + L + + + ++ + E +P + L + +D
Sbjct: 2085 PNYPAERLAYMLEDSGAALLLTQ-------RHLLERLPLPAGVARLPLDRDA--EWADYP 2135
Query: 621 KTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPKAA 655
T PA ++ ++L Y IYTSG+TGLPK
Sbjct: 2136 DTAPAVQLAG-------ENLAYVIYTSGSTGLPKGV 2164
|
Length = 5163 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 133 SVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW- 191
++KR P+ P D T Q+ + ++ + + G GD +AL+ NRPE V
Sbjct: 21 ALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPE---VLM 77
Query: 192 -LGAAKL 197
+GAA+L
Sbjct: 78 AIGAAQL 84
|
Length = 524 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
+F +GD+ V+ GY+ KDR+ D GEN+S++EVE
Sbjct: 417 WFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVE 455
|
Length = 545 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-04
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A F D++ T ++++E +N++A L+ G GD++A+ E PE V L K
Sbjct: 1 PDAVAVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60
Query: 198 G 198
G
Sbjct: 61 G 61
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 9e-04
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 23/150 (15%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
QI + + ++ +L++ G GD + L + P+ V + L GV++ L N L +
Sbjct: 35 QIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDH 94
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKP-DLPNLSDLMKTTPASEV 628
+ + ++ S L D +P + ++LM + A+ V
Sbjct: 95 ALAARNTEPALVVTSDA------------------LRDRFQPSRVAEAAELM--SEAARV 134
Query: 629 KPS--EPLQTSDSLLYIYTSGTTGLPKAAI 656
P EP+ YTSGTTG PKAAI
Sbjct: 135 APGGYEPMGGDALAYATYTSGTTGPPKAAI 164
|
Length = 705 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
A TL S + RP+A +D + ++ +++A L G ++GD +A
Sbjct: 5 AAPRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVA 64
Query: 179 LMCENRPEYVGVWLGAAKLGVISKLSNVVW----LAQLLGKK----MV---HFKGI 223
+ N E+V ++L A+LG N + +A +LG+ +V FKGI
Sbjct: 65 VWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGI 120
|
Length = 540 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 134 VKRRPNAPCY--YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191
+ P+ P E T +++DE SN++A + + G K+GD +A+ EN Y+ V
Sbjct: 7 AQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVC 66
Query: 192 LGAAKLG 198
A + G
Sbjct: 67 WAAERSG 73
|
Length = 511 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVI 200
E +T K++ E SNK A +L++ G +KGD + + PE Y + LGA K G I
Sbjct: 71 KEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL-LGALKNGAI 124
|
Length = 570 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCEN 183
+LV F+++V R + P + E T ++++E S A LQ+ G KKGD +ALM N
Sbjct: 24 SLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPN 83
Query: 184 RPEYVGVWLGAAKLGVI 200
+Y G + G+I
Sbjct: 84 LLQYPIALFGILRAGMI 100
|
Length = 560 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 11/182 (6%)
Query: 480 DVTYSRFKQEASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALM 536
D T + + A D A A++D+ ++++A L+ G K GD + +
Sbjct: 27 DRTLTDILTDH--AARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQ 84
Query: 537 CENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEI--EAI 594
N E+ + +LGV L + + L S +++ +IV+ +
Sbjct: 85 LPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFA 144
Query: 595 RE---SIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGL 651
RE P ++ ++ + + P++ + PA P+ P + + + GTTG
Sbjct: 145 RELVAKHPTLRHVIVA-GEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGT 203
Query: 652 PK 653
PK
Sbjct: 204 PK 205
|
Length = 542 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 32/121 (26%), Positives = 56/121 (46%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ +D GY+ DR+ D + GE +S++++E + E V GV
Sbjct: 409 DGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYH 468
Query: 943 GDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
D R +I + + +++ +D + + P V + AI T T KI K L
Sbjct: 469 PKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTAL 528
Query: 1003 Q 1003
+
Sbjct: 529 R 529
|
Length = 542 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 518 IARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+A L D+ G + M N E++ V A +G + +N L +VH I+
Sbjct: 51 LAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHA 110
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLL------DETKPDLP------NLSDLMKTTP 624
+ + I+ ++ I + P V+ + D +P + L+
Sbjct: 111 EDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRS 170
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ--VGKHLLSLGSGDVIY 682
P T+ ++ Y++GTTG PK + + + L L++ G+
Sbjct: 171 TVYDWPELDETTAAAI--CYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFL 228
Query: 683 NCLPMYH 689
C+P+YH
Sbjct: 229 CCVPIYH 235
|
Length = 576 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ +N++ L+ G +AL+ E + +G+ +G+ K G ++ L Q
Sbjct: 3749 AELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQR 3808
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE-TKPDLPNLSDLMKTTPASE 627
L I ++ ++ SA A RE LLDE + P L + + A E
Sbjct: 3809 LQRIIELSRTPVLVCSA-------ACREQARA----LLDELGCANRPRLL-VWEEVQAGE 3856
Query: 628 VKPSEP--LQTSDSLLY-IYTSGTTGLPKAAIMPNFKVLLGGQVGK-HLLSLGSGDVI 681
V P D+L Y IYTSG+TGLPK +M + +L Q+ K L+L DVI
Sbjct: 3857 VASHNPGIYSGPDNLAYVIYTSGSTGLPK-GVMVEQRGMLNNQLSKVPYLALSEADVI 3913
|
Length = 4334 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
+T T ++ E ++A L G K GD +A++ ENRPE+V L G +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP 57
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 890 DMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRA 949
D + D GY + RT D G + T E+E +IS + E V GVK L G+
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVK-DALKGQV 537
Query: 950 GM-IAIVDTSNQVD-----LKL---LVQGLDANLPAYARPLFVRIMKAIEMTGTFKI--K 998
+ + S+ + L L ++ +D+ L A ARP V + A+ T + K+ +
Sbjct: 538 AVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRR 597
Query: 999 KIQLQNEGFDPSQIS 1013
IQ EG DP ++
Sbjct: 598 AIQAIAEGRDPGDLT 612
|
Length = 629 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 41/163 (25%)
Query: 509 AQIDEYSNKIARILQDDGFKKGD---VLALM-CENRPEYVGVWLGAAKLGVISALINTNL 564
++ E + +IA L G GD VLA E P G+W+ A L T L
Sbjct: 33 GEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASL--------TML 84
Query: 565 KKQP-----LVH-------SISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPD 612
QP L I + +KA++V + + E V
Sbjct: 85 H-QPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLT--------- 134
Query: 613 LPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAA 655
++DL+ P V+ E D L TSG+TG PKA
Sbjct: 135 ---VADLLAADPIDPVETGE----DDLALMQLTSGSTGSPKAV 170
|
Length = 545 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
+ ++ E S ++A +L D G K GD +A + PE V L ++G I
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAI 51
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 803 GIIPTLLPTFLHPVAIIQFDLVEN--QPIRDPKTG--LCIRCKYNQPGMIIGEIKQSDPS 858
G PT + P I+ +V+ P+ P G L I+ + PGM+ D
Sbjct: 408 GATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPW--PGMLRTIYG--DHE 463
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
R Y F P Y+ +GD D+ GY++ R D G +
Sbjct: 464 RFVDTY--------------FSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLG 509
Query: 919 TMEVEATI 926
T E+E+ +
Sbjct: 510 TAEIESAL 517
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 494 RSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553
R D T ++ E + + ++A+ L G + GD + + N ++ + G +
Sbjct: 32 RVEGDIHRYTYRDCERR----AKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87
Query: 554 GVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDL 613
G + IN L + + + ++ + + ++ + P ++A+ P+VK ++ L
Sbjct: 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHL 147
Query: 614 PNLS-------DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG- 665
P S L+ P + SL YTSGTTG PK A+ + +L
Sbjct: 148 PAGSTPLLCYETLVGAQDGDYDWPRFDENQASSL--CYTSGTTGNPKGALYSHRSTVLHA 205
Query: 666 -GQVGKHLLSLGSGDVIYNCLPMYH-SAGGL 694
G + L + D + +PM+H +A GL
Sbjct: 206 YGAALPDAMGLSARDAVLPVVPMFHVNAWGL 236
|
Length = 539 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1102 | |||
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179|consensus | 649 | 100.0 | ||
| KOG1176|consensus | 537 | 100.0 | ||
| KOG1177|consensus | 596 | 100.0 | ||
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175|consensus | 626 | 100.0 | ||
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1256|consensus | 691 | 100.0 | ||
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| KOG1180|consensus | 678 | 100.0 | ||
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| KOG1178|consensus | 1032 | 100.0 | ||
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.89 | |
| KOG3628|consensus | 1363 | 99.88 | ||
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.87 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.8 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.64 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 99.62 | |
| KOG1179|consensus | 649 | 99.59 | ||
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 99.55 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.52 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 99.46 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 99.44 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 99.38 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 99.38 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.38 | |
| PLN02654 | 666 | acetate-CoA ligase | 99.37 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 99.36 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 99.35 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 99.34 | |
| KOG1177|consensus | 596 | 99.34 | ||
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 99.34 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.33 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.32 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.32 | |
| KOG2039|consensus | 875 | 99.31 | ||
| PF00567 | 121 | TUDOR: Tudor domain; InterPro: IPR008191 There are | 99.3 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.3 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.29 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 99.28 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 99.27 | |
| PRK09274 | 552 | peptide synthase; Provisional | 99.26 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.26 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 99.26 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.25 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.25 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.24 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 99.23 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.23 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.23 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.21 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.21 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.21 | |
| KOG3628|consensus | 1363 | 99.2 | ||
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.2 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.2 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.2 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.2 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.19 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.19 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.19 | |
| KOG1256|consensus | 691 | 99.19 | ||
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.19 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.19 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 99.18 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.18 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.18 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.18 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.18 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.17 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.17 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.17 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.16 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.16 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.16 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.15 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 99.15 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.15 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.15 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.14 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.14 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.14 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.14 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.14 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.14 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.14 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.14 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.12 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.12 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.11 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.11 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.11 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.11 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.11 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.1 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.1 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.1 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.1 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.1 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.09 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.08 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.08 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.08 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.08 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.07 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.06 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 99.06 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.06 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.06 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.06 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.06 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 99.05 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.05 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.04 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.03 | |
| KOG1175|consensus | 626 | 99.01 | ||
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 98.99 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 98.99 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 98.98 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 98.97 | |
| KOG1176|consensus | 537 | 98.96 | ||
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 98.95 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 98.89 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 98.89 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 98.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.81 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 98.8 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.78 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 98.72 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 98.7 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 98.68 | |
| KOG1180|consensus | 678 | 98.63 | ||
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 98.62 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 98.59 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 98.59 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 98.5 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 98.47 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.43 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.42 | |
| KOG2279|consensus | 608 | 98.22 | ||
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 98.09 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.74 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.73 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.66 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 97.64 | |
| COG3433 | 74 | Aryl carrier domain [Secondary metabolites biosynt | 97.36 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 96.47 | |
| CHL00124 | 82 | acpP acyl carrier protein; Validated | 96.4 | |
| PRK00982 | 78 | acpP acyl carrier protein; Provisional | 96.31 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 96.02 | |
| PRK09184 | 89 | acyl carrier protein; Provisional | 95.88 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 95.83 | |
| PRK05883 | 91 | acyl carrier protein; Validated | 95.43 | |
| PRK12449 | 80 | acyl carrier protein; Provisional | 95.37 | |
| PRK07081 | 83 | acyl carrier protein; Provisional | 95.12 | |
| TIGR00517 | 77 | acyl_carrier acyl carrier protein. S (Ser) at posi | 95.03 | |
| PRK05350 | 82 | acyl carrier protein; Provisional | 94.97 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 94.78 | |
| smart00318 | 138 | SNc Staphylococcal nuclease homologues. | 94.3 | |
| PRK07117 | 79 | acyl carrier protein; Validated | 94.03 | |
| PRK05828 | 84 | acyl carrier protein; Validated | 93.32 | |
| KOG1178|consensus | 1032 | 92.91 | ||
| PF00565 | 108 | SNase: Staphylococcal nuclease homologue; InterPro | 92.5 | |
| COG0236 | 80 | AcpP Acyl carrier protein [Lipid metabolism / Seco | 92.41 | |
| PF05641 | 68 | Agenet: Agenet domain; InterPro: IPR008395 This do | 91.77 | |
| PRK07639 | 86 | acyl carrier protein; Provisional | 91.23 | |
| KOG4327|consensus | 218 | 91.14 | ||
| PRK05087 | 78 | D-alanine--poly(phosphoribitol) ligase subunit 2; | 90.95 | |
| KOG2279|consensus | 608 | 89.97 | ||
| PTZ00171 | 148 | acyl carrier protein; Provisional | 89.76 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 88.88 | |
| cd00175 | 129 | SNc Staphylococcal nuclease homologues. SNase homo | 87.3 | |
| PRK08172 | 82 | putative acyl carrier protein IacP; Validated | 85.78 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 84.86 | |
| KOG3026|consensus | 262 | 83.46 | ||
| KOG2452|consensus | 881 | 82.98 |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-84 Score=927.16 Aligned_cols=634 Identities=16% Similarity=0.207 Sum_probs=525.8
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|+++.|+.++ +++|.++|.++|++++. +|+.+++++++++++++++++..||.+...++...+++.+++.
T Consensus 3656 ~l~y~~~~~~~~~-~~~l~~~f~~~L~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 3728 (4334)
T PRK05691 3656 HLSYDQRYFDAPT-VERLLGEFKRLLLALVQ-----GFHGDLSELPLLGEQERDFLLDGCNRSERDYPLEQSYVRLFEA- 3728 (4334)
T ss_pred EEEEchhhCCHHH-HHHHHHHHHHHHHHHHh-----CcCCChhhcCCCCHHHHHHHHHhhCCccCCCccccCHHHHHHH-
Confidence 4567788888888 99999999999999999 8999999999999999999999999887777776566666665
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+.+++. |+||+++++++|++|.+.|+++|++|+|++++++++++++|||+|+|++||||||++|.+
T Consensus 3729 -~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~ 3807 (4334)
T PRK05691 3729 -QVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQ 3807 (4334)
T ss_pred -HHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHH
Confidence 6999999999998876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCC---ceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEE
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIY 644 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~ 644 (1102)
|+.+|+++++++++|++.........+...+.. ..++..+. .... ......+.....++++|||+|
T Consensus 3808 r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~ayvi~ 3876 (4334)
T PRK05691 3808 RLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------VQAG-EVASHNPGIYSGPDNLAYVIY 3876 (4334)
T ss_pred HHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc----------cccc-cccccCCCCCCCCCceEEEEE
Confidence 999999999999999998776554444332221 11222111 0000 001111123467899999999
Q ss_pred CCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHH
Q psy12852 645 TSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRD 721 (1102)
Q Consensus 645 TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~ 721 (1102)
||||||+||||+++|+++++.+.+....++++++|+++++.|++|+.+ ++++|.+|+.|+++++++. .++..+.+.
T Consensus 3877 TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~ 3955 (4334)
T PRK05691 3877 TSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVPNAIAHDPQGLLAH 3955 (4334)
T ss_pred CCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 9999999999999999875 678999999
Q ss_pred HhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCc
Q psy12852 722 CAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGA 801 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 801 (1102)
++++++|++.++|++++.++.... ....+++.+++|||+++++++++|.+.+++++++|.||+|||++.++........
T Consensus 3956 ~~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691 3956 VQAQGITVLESVPSLIQGMLAEDR-QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred HHHcCCeEEEeCHHHHHHHHhhcc-ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence 999999999999999998876432 2345788999999999999999999998888999999999999887654322211
Q ss_pred -ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc
Q psy12852 802 -VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF 879 (1102)
Q Consensus 802 -~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~ 879 (1102)
.+...+++.+. .+..++++|+. .+++|.|++|||+ +.|+ .+++||+|+| .|.++|+++|+
T Consensus 4035 ~~~~~~~iG~p~-~~~~~~v~d~~------------~~~~p~g~~GEL~----i~G~-~v~~GY~~~~~~t~~~f~~~p~ 4096 (4334)
T PRK05691 4035 TRGSYLPIGSPT-DNNRLYLLDEA------------LELVPLGAVGELC----VAGT-GVGRGYVGDPLRTALAFVPHPF 4096 (4334)
T ss_pred ccCCcCCCCCcc-CCCEEEEECCC------------CCCCCCCCceEEE----Eecc-cccccccCCcccchhhcccCCC
Confidence 12222233333 45566666644 2456889988876 5588 5889999987 89999999998
Q ss_pred C-CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC
Q psy12852 880 K-PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS 958 (1102)
Q Consensus 880 ~-~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~ 958 (1102)
. +|+|||||||+|+|++||+|+|+||+|+|||+||+||+|+|||++|.++|+|.+|+|+.. .+..+ ..+++|+...
T Consensus 4097 ~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~--~~~~~-~~l~a~~~~~ 4173 (4334)
T PRK05691 4097 GAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQ--EGVNG-KHLVGYLVPH 4173 (4334)
T ss_pred CCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEe--cCCCC-cEEEEEEeCC
Confidence 5 578999999999999999999999999999999999999999999999999999988753 23233 4566665432
Q ss_pred Cc-----cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHH
Q psy12852 959 NQ-----VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYE 1033 (1102)
Q Consensus 959 ~~-----~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1102)
.. ...++++++|+++||+||+|+.|+.+++||+|+||||||++|+++...... ...+. .+.+..|
T Consensus 4174 ~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~--~~~~~--------~p~~~~e 4243 (4334)
T PRK05691 4174 QTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPALDIGQLQ--SQAYL--------APRNELE 4243 (4334)
T ss_pred cccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCCcccccc--ccccC--------CCCCHHH
Confidence 21 224779999999999999999999999999999999999999876432111 11111 1233468
Q ss_pred hhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1034 KIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1034 ~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+.|..+|+++|+. ++|+++||||++|||||+||||++++++. |+.+++.+||++|||++||+.
T Consensus 4244 ~~l~~iw~~vL~~-~~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~ 4307 (4334)
T PRK05691 4244 QTLATIWADVLKV-ERVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEY 4307 (4334)
T ss_pred HHHHHHHHHHhCC-CcCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHH
Confidence 8899999999998 88999999999999999999999999876 999999999999999999864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-83 Score=916.57 Aligned_cols=629 Identities=15% Similarity=0.171 Sum_probs=530.0
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+..+ +++|+.+|.++|++++. +|+.+++++++++++++++++..||.+...++...+++.+++.
T Consensus 3031 ~~~y~~~~~~~~~-~~~~~~~~~~~l~~~~~-----~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 3103 (3956)
T PRK12467 3031 EFSYDRQHFDAAA-IERLAESFDRLLQAMLN-----NPAARLGELPTLAAHERRQVLHAWNATAAAYPSERLVHQLIEA- 3103 (3956)
T ss_pred EEEechhhCCHHH-HHHHHHHHHHHHHHHHh-----CcCCchhhccCCCHHHHHHHHHhhccCCCCCCccccHHHHHHH-
Confidence 5568889999999 99999999999999999 9999999999999999999989999887777766667666665
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|++||||||.+|.+
T Consensus 3104 -~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~ 3182 (3956)
T PRK12467 3104 -QVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRE 3182 (3956)
T ss_pred -HHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHH
Confidence 6999999999998876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
|+.+++++++++++|++....+.+.. ......+.++... .... ....+.....++++|||+||||
T Consensus 3183 rl~~il~~~~~~~vlt~~~~~~~~~~----~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~a~ii~TSG 3247 (3956)
T PRK12467 3183 RLAYMIEDSGVKLLLTQAHLLEQLPA----PAGDTALTLDRLD---------LNGY--SENNPSTRVMGENLAYVIYTSG 3247 (3956)
T ss_pred HHHHHHhCCCCcEEEechhhhhhccc----ccCCceeeecchh---------hccc--CCCCCcccCCCCceEEEEEccC
Confidence 99999999999999998765443221 1122333333210 0001 1111223567899999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC--CCHhHHHHHHhhc
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK--FSASNYFRDCAKY 725 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~--~~~~~l~~~i~~~ 725 (1102)
|||+||||+++|+++.+.+.+....++++++|++++++|++|+.+ ++++|.+|..|+++++.+. +++..+++.|+++
T Consensus 3248 STG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~ 3326 (3956)
T PRK12467 3248 STGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAH 3326 (3956)
T ss_pred CCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987 9999999999999999886 7899999999999
Q ss_pred ccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCc--cc
Q psy12852 726 KCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGA--VG 803 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~--~g 803 (1102)
++|++.++|++++.|++........+++.+++|||+++++++++|.+.++..+++|.||+||+++.++........ ..
T Consensus 3327 ~vt~~~~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 3406 (3956)
T PRK12467 3327 RISIACFPPAYLQQFAEDAGGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEA 3406 (3956)
T ss_pred CCEEEEcCHHHHHHHHhcccccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCC
Confidence 9999999999999998765555566789999999999999999999988877899999999999877644321111 01
Q ss_pred ccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc-CC
Q psy12852 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF-KP 881 (1102)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~-~~ 881 (1102)
...+++.+. .+..++++|++ + +++|.|++||++ ++|+ .+++||+|++ +|+++|+.+|| .+
T Consensus 3407 ~~~~iG~p~-~~~~~~v~d~~-~-----------~~vp~G~~GEL~----i~G~-~v~~GY~~~~~~T~~~F~~~p~~~~ 3468 (3956)
T PRK12467 3407 PYAPIGRPV-AGRSIYVLDGQ-L-----------NPVPVGVAGELY----IGGV-GLARGYHQRPSLTAERFVADPFSGS 3468 (3956)
T ss_pred CCCCCcccc-CCCEEEEECCC-C-----------CCCCCCCCceEE----Ecch-hhhhhccCCcccchhhccCCCCCCC
Confidence 111222222 45566666644 3 356889999876 5688 5899999986 89999999998 56
Q ss_pred CCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC--C
Q psy12852 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS--N 959 (1102)
Q Consensus 882 g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~--~ 959 (1102)
|+|||||||+|++++||+|+|+||+|+|||+||+||+|+|||++|.++|+|.+|+|++.. +..+ ..+++|+... .
T Consensus 3469 g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~--~~~~-~~lva~v~~~~~~ 3545 (3956)
T PRK12467 3469 GGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD--GAGG-KQLVAYVVPADPQ 3545 (3956)
T ss_pred CceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec--CCCC-cEEEEEEeCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999843 2233 4556666443 3
Q ss_pred ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCC
Q psy12852 960 QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQ 1039 (1102)
Q Consensus 960 ~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1039 (1102)
....++++++++++||.||+|..|+++++||+|+||||||++|++...... ..+.. ..+..|+.+..+
T Consensus 3546 ~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~----~~~~~--------p~~~~e~~l~~i 3613 (3956)
T PRK12467 3546 GDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAKGS----REYVA--------PRSEVEQQLAAI 3613 (3956)
T ss_pred cccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcccc----ccccC--------CCCHHHHHHHHH
Confidence 466789999999999999999999999999999999999999997653321 11111 223467888899
Q ss_pred CcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1040 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1040 ~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
|+++|+. +.|++++|||++|||||+||+|++++++. |+.+++.+||++||+++||+.
T Consensus 3614 ~~~vL~~-~~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~ 3671 (3956)
T PRK12467 3614 WADVLGV-EQVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGY 3671 (3956)
T ss_pred HHHHhCC-CCCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHH
Confidence 9999998 78999999999999999999999999987 999999999999999999864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-83 Score=911.15 Aligned_cols=631 Identities=16% Similarity=0.199 Sum_probs=524.6
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+..+ +++|+.+|.++|++++. +|+.++++++++++.++++++..||.+...++...+++.+++.
T Consensus 1510 ~~~y~~~lf~~~~-i~~l~~~~~~lL~~l~~-----~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1582 (3956)
T PRK12467 1510 SLTYATDLFEAST-IERLAGHWLNLLQGLVA-----DPERRLGELDLLDEAERRQILEGWNATHTGYPLARLVHQLIED- 1582 (3956)
T ss_pred EEEEeCCcCCHHH-HHHHHHHHHHHHHHHhh-----CccCceeeccccchHHhhhhHHhhcCCccCCCccccHHHHHHH-
Confidence 5789999999999 99999999999999999 9999999999999999999999999888777766666666665
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+++++. |+||+++++++|++|.+.|+++|++|+++++|++++++++|||+|+|++|+||||.+|.+
T Consensus 1583 -~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~ 1661 (3956)
T PRK12467 1583 -QAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRE 1661 (3956)
T ss_pred -HHHhCCCCeEEEeCCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHH
Confidence 6999999999998765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
|+.+++++++++++|++......+. ......++.++... ........ ..+.....++++|||+||||
T Consensus 1662 rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~ayiiyTSG 1728 (3956)
T PRK12467 1662 RLAYMIEDSGIELLLTQSHLQARLP----LPDGLRSLVLDQED-------DWLEGYSD--SNPAVNLAPQNLAYVIYTSG 1728 (3956)
T ss_pred HHHHHHHhCCCCEEEeChhhhhhCc----cccCCcEEEecccc-------chhccCCC--CCCCCCCCCcCcEEEEECCC
Confidence 9999999999999999876543321 11123444444211 11111111 11123457889999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAK 724 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~ 724 (1102)
|||+||||+++|+++.+.+.+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.++ .++..+.+.|++
T Consensus 1729 STG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~ 1807 (3956)
T PRK12467 1729 STGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVS-VWELFWPLINGARLVIAPPGAHRDPEQLIQLIER 1807 (3956)
T ss_pred cCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHH-HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8999999999999999875 579999999999
Q ss_pred cccccccccHHHHHHHHhcc-CCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCC-cc
Q psy12852 725 YKCNAGIYIGEMCRYLLASK-ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG-AV 802 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~-~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-~~ 802 (1102)
+++|++.++|++++.|+... ......+++.+++|||+++++++++|.+.++..+++|.||+||+++.++....... ..
T Consensus 1808 ~~vt~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~ 1887 (3956)
T PRK12467 1808 QQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887 (3956)
T ss_pred cCCeEEECCHHHHHHHHhhccccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccc
Confidence 99999999999999998742 22334578889999999999999999999887789999999999988765433210 11
Q ss_pred c-ccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccC
Q psy12852 803 G-IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFK 880 (1102)
Q Consensus 803 g-~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~ 880 (1102)
+ ...+++.+. .+..++++|++ + +++|.|++||++ +.|+ .+++||+|++ .|.++|+.+|+.
T Consensus 1888 ~~~~~~iG~p~-~~~~~~vld~~-~-----------~~vp~G~~GEl~----i~G~-~v~~GYl~~p~~t~~~f~~~p~~ 1949 (3956)
T PRK12467 1888 GRDSVPIGQPI-ANLSTYILDAS-L-----------NPVPIGVAGELY----LGGV-GLARGYLNRPALTAERFVADPFG 1949 (3956)
T ss_pred cCCCCCccccc-CCCEEEEECCC-C-----------CCCCCCCceEEE----eccc-cccccccCChhhhhhhCcCCCCC
Confidence 1 111222222 44556666643 3 456889888866 5688 4899999986 899999999986
Q ss_pred -CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC
Q psy12852 881 -PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN 959 (1102)
Q Consensus 881 -~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~ 959 (1102)
+|++||||||+|++++||.|+|+||+|+|||++|+||+|+|||++|.++|+|.+|+|++.+ + .+...+++|+....
T Consensus 1950 ~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~--~-~~~~~lva~vv~~~ 2026 (3956)
T PRK12467 1950 TVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD--G-ANGKQLVAYVVPTD 2026 (3956)
T ss_pred CCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec--C-CCCcEEEEEEEecC
Confidence 4789999999999999999999999999999999999999999999999999999999854 3 23345555553322
Q ss_pred c----------cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCH
Q psy12852 960 Q----------VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTP 1029 (1102)
Q Consensus 960 ~----------~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1102)
. ...++++++++++||.||+|+.|+++++||+|+||||||++|++....... ..+. .+.
T Consensus 2027 ~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~~~~~~---~~~~--------~p~ 2095 (3956)
T PRK12467 2027 PGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDASELQ---QAYV--------APQ 2095 (3956)
T ss_pred cccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCcccccc---cccc--------CCC
Confidence 1 135689999999999999999999999999999999999999875432111 1111 122
Q ss_pred HHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa 1096 (1102)
+..|+.+..+|+++|+. +.|+++||||++|||||+||+|++++++.|+.+++.+||++|||++||+
T Consensus 2096 ~~~e~~l~~iw~~vL~~-~~i~~~d~Ff~lGGdSl~a~~l~~~~~~~g~~l~~~~if~~~ti~~la~ 2161 (3956)
T PRK12467 2096 SELEQRLAAIWQDVLGL-EQVGLHDNFFELGGDSIISIQVVSRARQAGIRFTPKDLFQHQTVQSLAA 2161 (3956)
T ss_pred CHHHHHHHHHHHHHhCC-CccCCCCChhhcCCchHHHHHHHHHHHHcCCCCCHHHHhcCCCHHHHHH
Confidence 33678888899999998 8999999999999999999999999998899999999999999999986
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-82 Score=913.56 Aligned_cols=619 Identities=16% Similarity=0.190 Sum_probs=523.4
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+.++ +++|+++|.++|++++. +|+.++++++++++.++++++..||.+..+++...+++.+++.
T Consensus 2993 ~~~y~~~~~~~~~-i~~l~~~f~~lL~~l~~-----~p~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 3065 (5163)
T PRK12316 2993 SLTYATDLFDART-VERLARHWQNLLRGMVE-----NPQRSVDELAMLDAEERGQLLEAWNATAAEYPLERGVHRLFEE- 3065 (5163)
T ss_pred EEEECcCCCCHHH-HHHHHHHHHHHHHHHHh-----CCCCchhhccCCCHHHHHHHHHHhCCCCcCCCCcCCHHHHHHH-
Confidence 5678899999999 99999999999999999 8999999999999999999999999888777766666666666
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+.+++. |+||+++++++|++|.+.|+++|++|+|++++++++++++|||+|+|++||||||++|.+
T Consensus 3066 -~~~~~p~~~Av~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~lail~aGa~~vpld~~~p~~ 3144 (5163)
T PRK12316 3066 -QVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEE 3144 (5163)
T ss_pred -HHHhCCCCeeEeeCCeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHHHHhCceeeecCCCCcHH
Confidence 7999999999998776 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
|+++++++++++++|++... . ........++.++... .. .....+.....++++|||+||||
T Consensus 3145 rl~~il~~~~~~~~l~~~~~-----~-~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~ayii~TSG 3206 (5163)
T PRK12316 3145 RLAYMLEDSGAQLLLSQSHL-----R-LPLAQGVQVLDLDRGD----------EN--YAEANPAIRTMPENLAYVIYTSG 3206 (5163)
T ss_pred HHHHHHHhcCCCEEEeCccc-----c-CCccCCccEEEecccc----------cc--ccccCCCCCCCCCCeEEEEeCCC
Confidence 99999999999999998654 1 1111223444444311 00 01111123567889999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAK 724 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~ 724 (1102)
|||+||||+++|+++.+.+.+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .++..+.+.+++
T Consensus 3207 STG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~ 3285 (5163)
T PRK12316 3207 STGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVF-VEELFWPLMSGARVVLAGPEDWRDPALLVELINS 3285 (5163)
T ss_pred CCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHH-HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 9999999999999999875 578999999999
Q ss_pred cccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccc
Q psy12852 725 YKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~ 804 (1102)
+++|++.++|++++.++..........++.+++|||++++++.++|.. +.+++|.||||||+++++.........+.
T Consensus 3286 ~~v~~~~~~ps~~~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 3362 (5163)
T PRK12316 3286 EGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDA 3362 (5163)
T ss_pred cCCcEEEcCHHHHHHHHhccccccCCcceEEEEccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCC
Confidence 999999999999999987655555567899999999999999999983 33799999999999988755432221122
Q ss_pred cCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCC
Q psy12852 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGD 883 (1102)
Q Consensus 805 ~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~ 883 (1102)
.++| .+. .+..++++|++ + +++|.|++||++ +.|+ .+++||+|+| +|+++|+.+|+.+|+
T Consensus 3363 ~~iG-~p~-~~~~~~i~d~~-~-----------~~~p~G~~GEl~----i~G~-~v~~GY~~~~~~t~~~f~~~p~~~~~ 3423 (5163)
T PRK12316 3363 VPIG-RPI-ANRACYILDGS-L-----------EPVPVGALGELY----LGGE-GLARGYHNRPGLTAERFVPDPFVPGE 3423 (5163)
T ss_pred Cccc-eec-CCCEEEEECCC-C-----------CCCCCCCCceEE----eccc-ccchhcCCChhhchhhCCCCCCCCCC
Confidence 2222 222 45556666644 3 456999999876 5688 4899999986 899999999998889
Q ss_pred eEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC--cc
Q psy12852 884 KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN--QV 961 (1102)
Q Consensus 884 ~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~--~~ 961 (1102)
+||||||+|++++||.|+|+||+|+|||++|+||+|+|||++|.++|+|.+|+|++.. + ..+++|++... ..
T Consensus 3424 ~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~~~~~V~~a~v~~~~-----~-~~l~a~vv~~~~~~~ 3497 (5163)
T PRK12316 3424 RLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD-----G-RQLVAYVVPEDEAGD 3497 (5163)
T ss_pred eeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHHhCCCcceEEEEEcc-----C-CeEEEEEEcCCcCcc
Confidence 9999999999999999999999999999999999999999999999999999998732 2 34556554332 45
Q ss_pred CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCc
Q psy12852 962 DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPG 1041 (1102)
Q Consensus 962 ~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1041 (1102)
..++++++|+++||.||+|..|+++++||+|+||||||++|++....... ..+ ....+..|+.+..+|+
T Consensus 3498 ~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKvdr~~L~~~~~~~~~---~~~--------~~p~~~~e~~l~~iw~ 3566 (5163)
T PRK12316 3498 LREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALLQ---QDY--------VAPVNELERRLAAIWA 3566 (5163)
T ss_pred cHHHHHHHHHhhCCcccCcceeeeHhhcCCCCCcchhHHhcCCCcccccc---ccc--------cCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999875432211 001 1223447888899999
Q ss_pred chhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccC
Q psy12852 1042 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1042 ~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa 1096 (1102)
++|+. +.|+++||||++|||||+||++++++|+.|+.+++.+||++|||++||+
T Consensus 3567 ~vL~~-~~i~~~d~Ff~lGGdSl~a~~l~~~~~~~g~~~~~~~~f~~~ti~~la~ 3620 (5163)
T PRK12316 3567 DVLKL-EQVGLTDNFFELGGDSIISLQVVSRARQAGIRFTPKDLFQHQTIQGLAR 3620 (5163)
T ss_pred HHhCC-CCCCCCCCchhcCCccHHHHHHHHHHHHcCCCCCHHHHhcCCCHHHHHH
Confidence 99998 7899999999999999999999999998899999999999999999987
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=831.44 Aligned_cols=627 Identities=14% Similarity=0.189 Sum_probs=516.1
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+.++ +++++++|..+|++++. +|+.++++++++++.+.++ +..+|.+..+.+..+..+.|.+
T Consensus 396 ~~~y~~~~f~~~~-i~~l~~~~~~ll~~~~~-----~p~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-- 466 (1296)
T PRK10252 396 EILANPQRYDEAT-LIAHAERLKALIAQFAA-----DPALLCGDVDILLPGEYAQ-LAQVNATAVEIPETTLSALVAQ-- 466 (1296)
T ss_pred EEEEChhhCCHHH-HHHHHHHHHHHHHHHHh-----CCCCChhhcCCCCHHHHHH-HHHhcCCCCCCCcCCHHHHHHH--
Confidence 6889999999999 99999999999999999 9999999999999999887 6778877777766555555554
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+++++|+++|+++.+. |+||.++++++|+.|.+.|+++|++|+|+++++.++++++|||+++|++|+|+||.+|.+
T Consensus 467 -~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~ 545 (1296)
T PRK10252 467 -QAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDD 545 (1296)
T ss_pred -HHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHH
Confidence 5889999999998765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
++.+++++++++++|++......+.. .+.......+. ...... ........++++|||+||||
T Consensus 546 ~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~a~i~~TSG 608 (1296)
T PRK10252 546 RLKMMLEDARPSLLITTADQLPRFAD----VPDLTSLCYNA----------PLAPQG---AAPLQLSQPHHTAYIIFTSG 608 (1296)
T ss_pred HHHHHHHhCCCCEEEECcchhhhccc----CCCceeeeccc----------cccccc---CCCCCCCCCCCeEEEEECCC
Confidence 99999999999999998765543322 11222222211 000000 01112346789999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAK 724 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~ 724 (1102)
|||+||||+++|+++.+++.+....++++++|++++.+|++|+.+ ++++|.+|+.|+++++.++ .++..+.+.|++
T Consensus 609 STG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~ 687 (1296)
T PRK10252 609 STGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVS-VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAE 687 (1296)
T ss_pred CCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhh-HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8999999999999999874 689999999999
Q ss_pred cccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCC
Q psy12852 725 YKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG 800 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 800 (1102)
+++|++.++|++++.++...... ...+++.+++|||++++++.++|.+.++. +++|.||+||+++.++.......
T Consensus 688 ~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~-~l~n~YG~TE~~~~~~~~~~~~~ 766 (1296)
T PRK10252 688 YGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGA-PLHNLYGPTEAAVDVSWYPAFGE 766 (1296)
T ss_pred cCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCC-EEEeCCCcchhhheeeeeecccc
Confidence 99999999999999887753322 23577888999999999999999987754 89999999999987765433221
Q ss_pred c----ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHh
Q psy12852 801 A----VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKIL 875 (1102)
Q Consensus 801 ~----~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~ 875 (1102)
. .+...+++.+. .+..+.++|++ + +++|.|++||++ +.|+ .++.||++++ .|.++|+
T Consensus 767 ~~~~~~~~~~~iG~p~-~~~~~~i~d~~-~-----------~~~~~g~~Gel~----i~g~-~~~~GY~~~~~~t~~~f~ 828 (1296)
T PRK10252 767 ELAAVRGSSVPIGYPV-WNTGLRILDAR-M-----------RPVPPGVAGDLY----LTGI-QLAQGYLGRPDLTASRFI 828 (1296)
T ss_pred cccccCCCCCCccccc-CCCEEEEECCC-C-----------CCCCCCCceEEE----eccc-ccchhhCCCcccchhhcc
Confidence 1 12222222222 34455666644 3 455888888866 6688 4889999986 7899999
Q ss_pred hcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcC----CCCCceeE
Q psy12852 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVG----DLDGRAGM 951 (1102)
Q Consensus 876 ~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~----~~~~~~~l 951 (1102)
.+++.++++||+|||+|++++||+++|+||+|+|||++|+||+|.|||++|.++|+|.+++|+++... ...+...+
T Consensus 829 ~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~l 908 (1296)
T PRK10252 829 ADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQL 908 (1296)
T ss_pred cCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEE
Confidence 99998889999999999999999999999999999999999999999999999999999988764321 11222345
Q ss_pred EEEEcCC--CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCH
Q psy12852 952 IAIVDTS--NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTP 1029 (1102)
Q Consensus 952 ~~~v~~~--~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1102)
++|+... ...+.++|+++++++||.||+|..++.+++||+|+||||||++|++....... . .....
T Consensus 909 va~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~----------~--~~~~~ 976 (1296)
T PRK10252 909 VGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLPELKAQV----------P--GRAPK 976 (1296)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCCcccccc----------c--CCCCC
Confidence 5555432 24578899999999999999999999999999999999999999865321110 0 01122
Q ss_pred HHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1030 NTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
...++.+..+|+++|+. +.++.++|||++|||||+|++|+++|++. |..+++.++|++|||++||+.
T Consensus 977 ~~~e~~l~~~~~~~l~~-~~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~ 1044 (1296)
T PRK10252 977 TGTETIIAAAFSSLLGC-DVVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATL 1044 (1296)
T ss_pred CHHHHHHHHHHHHHhCC-CCCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHH
Confidence 33577788899999998 78999999999999999999999999876 999999999999999999864
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=900.50 Aligned_cols=628 Identities=15% Similarity=0.189 Sum_probs=526.3
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+.++ +++++++|.++|++++. +|++++++++++++.++.+++..|+.+...++...+++.+++.
T Consensus 447 ~~~y~~~lf~~~~-i~~l~~~~~~lL~~i~~-----~p~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 519 (5163)
T PRK12316 447 ALTYATDLFEART-VERMARHWQNLLRGMVE-----NPQARVDELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEE- 519 (5163)
T ss_pred EEEEchhhCCHHH-HHHHHHHHHHHHHHHHh-----ccccccccCCCCCHHHHHHHHHHhcCccccCCCCCCHHHHHHH-
Confidence 7899999999999 99999999999999998 9999999999999999999888899887777755556665555
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+.+++. |+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|++|+|+||.+|.+
T Consensus 520 -~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~ 598 (5163)
T PRK12316 520 -QVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAE 598 (5163)
T ss_pred -HHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHH
Confidence 6999999999998765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
++.+++++++++++|++......+. ......++.++... ........ ..+.....++++|||+||||
T Consensus 599 rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~a~ii~TSG 665 (5163)
T PRK12316 599 RLAYMLEDSGVQLLLSQSHLGRKLP----LAAGVQVLDLDRPA-------AWLEGYSE--ENPGTELNPENLAYVIYTSG 665 (5163)
T ss_pred HHHHHHHhCCCCEEEEChhhhhhCC----cccCceEEEecCcc-------hhhccCCC--CCCCCCCCCCCeEEEEECCC
Confidence 9999999999999999876543221 11123444443211 01111111 11123457889999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAK 724 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~ 724 (1102)
|||+||||+++|+++.+.+.+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.++ +++..+.+.|++
T Consensus 666 STG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~-~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~ 744 (5163)
T PRK12316 666 STGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVS-VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINR 744 (5163)
T ss_pred cCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHH-HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8899999999999999863 789999999999
Q ss_pred cccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccc
Q psy12852 725 YKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~ 804 (1102)
+++|++.++|++++.|+.........+++.+++|||+++++++++|.+.++..+++|.||+||+++.++......... .
T Consensus 745 ~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~-~ 823 (5163)
T PRK12316 745 EGVDTLHFVPSMLQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGG-D 823 (5163)
T ss_pred cCCeEEEeCHHHHHHHHhccccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccC-C
Confidence 999999999999999987655555667899999999999999999999888779999999999997665433211111 1
Q ss_pred cCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCC
Q psy12852 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGD 883 (1102)
Q Consensus 805 ~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~ 883 (1102)
..+++.+. .++.+.++|++ + +++|.|++||++ ++|+ .++.||+|++ .|.++|+.+++.+|+
T Consensus 824 ~~~iG~p~-~~~~~~i~d~~-~-----------~~~p~G~~GEl~----i~G~-~v~~GYl~~~~~t~~~f~~~~~~~~~ 885 (5163)
T PRK12316 824 SVPIGRPI-ANLACYILDAN-L-----------EPVPVGVLGELY----LAGR-GLARGYHGRPGLTAERFVPSPFVAGE 885 (5163)
T ss_pred CCCCcccc-CCCEEEEECCC-C-----------CCCCCCCceEEE----eccc-ccChhhCCChhhhhhhCCCCCCCCCC
Confidence 11222222 45566667654 3 356888888866 5688 4889999986 788999999988889
Q ss_pred eEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcC--CCcc
Q psy12852 884 KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT--SNQV 961 (1102)
Q Consensus 884 ~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~--~~~~ 961 (1102)
|||+|||+|++++||.|+|+||+|+|||++|+||+|+|||++|.+||+|.+|+|++.+ ++. +++|+.. +...
T Consensus 886 ~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-----~~~-lva~vv~~~~~~~ 959 (5163)
T PRK12316 886 RMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD-----GKQ-LVGYVVLESEGGD 959 (5163)
T ss_pred eeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC-----CCe-EEEEEEccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999843 343 4444433 2356
Q ss_pred CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCc
Q psy12852 962 DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPG 1041 (1102)
Q Consensus 962 ~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1041 (1102)
..++++++++++||.||+|+.|+++++||+|+||||||++|++....... ..+ ....+..|+.+..+|+
T Consensus 960 ~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~---~~~--------~~~~~~~e~~l~~iw~ 1028 (5163)
T PRK12316 960 WREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEASVAQ---QGY--------VAPRNALERTLAAIWQ 1028 (5163)
T ss_pred CHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCccccccc---ccc--------CCCCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999875432110 111 1123336788889999
Q ss_pred chhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1042 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1042 ~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++|+. +.+++++|||++|||||+||++++++++.|+.+++.+||++|||++||+.
T Consensus 1029 ~vL~~-~~i~~~~~Ff~lGgdSl~a~~l~~~~~~~g~~l~~~~~~~~~ti~~la~~ 1083 (5163)
T PRK12316 1029 DVLGV-ERVGLDDNFFELGGDSIVSIQVVSRARQAGIQLSPRDLFQHQTIRSLALV 1083 (5163)
T ss_pred HHhCC-CCCCCCCChhhcCCcHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHH
Confidence 99998 88999999999999999999999999988999999999999999999763
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-79 Score=878.72 Aligned_cols=626 Identities=15% Similarity=0.165 Sum_probs=515.6
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++.+|+.++ +++|+++|.++|++++. +|+.++++++++++.+++++ ..||.........+.++.|.+
T Consensus 1069 ~~~y~~~~~~~~~-i~~l~~~~~~~l~~~~~-----~p~~~~~~l~l~~~~~~~~l-~~~~~~~~~~~~~~l~~~~~~-- 1139 (4334)
T PRK05691 1069 SFDYAAELFDAAT-IERLAEHFLALLEQVCE-----DPQRALGDVQLLDAAERAQL-AQWGQAPCAPAQAWLPELLNE-- 1139 (4334)
T ss_pred EEEEchhhCCHHH-HHHHHHHHHHHHHHHHh-----CcccchhhhcCCCHHHHHHH-HhccCCCCCCccCCHHHHHHH--
Confidence 5678888999999 99999999999999998 99999999999999998884 467766544444444444444
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+.+++. |+||+++++++|++|++.|+++|++|+|+++++.++++++|||+|+|++|+|+||.+|.+
T Consensus 1140 -~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~ 1218 (4334)
T PRK05691 1140 -QARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAE 1218 (4334)
T ss_pred -HHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHH
Confidence 5899999999998765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
|+.+++++++++++|++......+.. ......+.++... . ..... ..+.....++++||++||||
T Consensus 1219 rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~-----~----~~~~~--~~~~~~~~~~~~a~ii~TSG 1283 (4334)
T PRK05691 1219 RLAYMLADSGVELLLTQSHLLERLPQ----AEGVSAIALDSLH-----L----DSWPS--QAPGLHLHGDNLAYVIYTSG 1283 (4334)
T ss_pred HHHHHHHhcCCCEEEecchhhhhccc----ccCceEEeecccc-----c----cccCC--CCCCCCCCCCCeEEEEEcCC
Confidence 99999999999999998765443321 1122233222210 0 00011 11112456789999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAK 724 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~ 724 (1102)
|||+||||+++|+++.+.+.+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.++ .++..+.+.|++
T Consensus 1284 STG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s-~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~ 1362 (4334)
T PRK05691 1284 STGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVS-VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQ 1362 (4334)
T ss_pred CCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHH-HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8999999999999999864 689999999999
Q ss_pred cccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccc
Q psy12852 725 YKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~ 804 (1102)
+++|++.++|++++.|..........+++.+++|||++++++.++|.+.+++.+++|.||+||+++.++......... .
T Consensus 1363 ~~vt~~~~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~-~ 1441 (4334)
T PRK05691 1363 YGVTTLHFVPPLLQLFIDEPLAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDG-E 1441 (4334)
T ss_pred cCCeEEECcHHHHHHHHhCcccccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccC-C
Confidence 999999999999999987655455668899999999999999999999998889999999999998776543211111 1
Q ss_pred cCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCC-C
Q psy12852 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKP-G 882 (1102)
Q Consensus 805 ~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~-g 882 (1102)
..+++.+. .+..+.++|++ + +++|.|++||++ +.|+ .++.||+|++ .|.++|+.+|+.. +
T Consensus 1442 ~~~iG~p~-~~~~~~i~d~~-~-----------~~vp~G~~GEL~----i~G~-~v~~GYl~~p~~t~~~f~~~p~~~~~ 1503 (4334)
T PRK05691 1442 RSPIGRPL-GNVLCRVLDAE-L-----------NLLPPGVAGELC----IGGA-GLARGYLGRPALTAERFVPDPLGEDG 1503 (4334)
T ss_pred CCccccee-CCCEEEEECCC-C-----------CCCCCCCceEEE----ecCc-ccchhhcCCccccHhhCCCCCCCCCC
Confidence 11222222 34455666644 3 356888888866 5688 5899999986 7899999988864 6
Q ss_pred CeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEc-CCCcc
Q psy12852 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD-TSNQV 961 (1102)
Q Consensus 883 ~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~-~~~~~ 961 (1102)
.+||||||+|++++||.++|+||+|+|||++|+||+|+|||++|.++|+|.+|+|++.. +..+...+++++. .+...
T Consensus 1504 ~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~--~~~~~~lva~~~~~~~~~~ 1581 (4334)
T PRK05691 1504 ARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVRE--GAAGAQLVGYYTGEAGQEA 1581 (4334)
T ss_pred ceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEee--CCCCCEEEEEEEeCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999998633 2234443444432 23345
Q ss_pred CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCc
Q psy12852 962 DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPG 1041 (1102)
Q Consensus 962 ~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1041 (1102)
+.++++++|+++||.||+|+.|+++++||+|+||||||++|++...... .. ..+.+..++.+..+|+
T Consensus 1582 ~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~-----------~~--~~p~~~~e~~l~~iw~ 1648 (4334)
T PRK05691 1582 EAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPVWQQR-----------EH--VEPRTELQQQIAAIWR 1648 (4334)
T ss_pred CHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCccccccc-----------cc--CCCCCHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999986532210 01 1122346788899999
Q ss_pred chhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1042 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1042 ~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++|+. +.|++++|||++|||||+||+|++++++. |+.+++.+||++|||++||+.
T Consensus 1649 ~vL~~-~~i~~~d~Ff~lGGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~ 1704 (4334)
T PRK05691 1649 EVLGL-PRVGLRDDFFALGGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQ 1704 (4334)
T ss_pred HHhCC-CCCCCCCchHHhcccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHH
Confidence 99998 78999999999999999999999999976 999999999999999999864
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=815.20 Aligned_cols=653 Identities=15% Similarity=0.154 Sum_probs=498.9
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccc-hhhhHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLE-VDVTYSRFKQE 489 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 489 (1102)
.+.|+..+|+.++ +++++.+|.++|++++. +|++++++++++++.+++.+..... ....+ ...+++.+++.
T Consensus 173 ~~~y~~~lf~~~~-i~~l~~~f~~lL~~~~~-----~p~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 244 (1389)
T TIGR03443 173 SIYYNSLLFSSDR-ITIVADQLAQLLSAASS-----NPDEPIGKVSLITPSQKSLLPDPTK--DLDWSGFRGAIHDIFAD 244 (1389)
T ss_pred EEEEchhcCCHHH-HHHHHHHHHHHHHHHHh-----CcCCceecccCCCHHHHhhhhcccc--ccCcCcccCcHHHHHHH
Confidence 6789999999999 99999999999999998 9999999999999998765432111 11111 12344455544
Q ss_pred HhhcccCCcccchhhc---------c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 490 ASNARSTNDAAATTVK---------N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 490 ~~~a~~~P~~~Av~~~---------~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
+|+++|+++|+++. + +|+||.++++++|++|++.|+++|++|+|++++++++++++|||+++|++|
T Consensus 245 --~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~ 322 (1389)
T TIGR03443 245 --NAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATF 322 (1389)
T ss_pred --HHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEE
Confidence 68999999999741 1 399999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcch---hHHHHHHhc-C---CCceEEEecCCC---CCCCCh--hHhhccCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYY---PEIEAIRES-I---PDVKLFLLDETK---PDLPNL--SDLMKTTPA 625 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~---~~~~~~~~~-~---~~~~~~~~~~~~---~~~~~~--~~~~~~~~~ 625 (1102)
+|+||.+|.+++.+++++++++++++..... ..+...... . .....+.+.... ...... .+.......
T Consensus 323 vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1389)
T TIGR03443 323 SVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLAPYQA 402 (1389)
T ss_pred eccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccccccccccccccc
Confidence 9999999999999999999999999876421 111111110 0 011111111100 000000 000000000
Q ss_pred -CCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 626 -SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 626 -~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
..........+++++||+|||||||+||||+++|+++.+++.+....++++++|++++++|++|+.+ ++++|.+|+.|
T Consensus 403 ~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~-~~~i~~~L~~G 481 (1389)
T TIGR03443 403 LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPI-QRDMFTPLFLG 481 (1389)
T ss_pred cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecch-HHHHHHHHhCC
Confidence 0001112356789999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred ceEEEeCC---CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhh
Q psy12852 705 SSIAIRTK---FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIE 781 (1102)
Q Consensus 705 ~~lv~~~~---~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n 781 (1102)
+++++++. .++..+.+.|+++++|+++++|++++.|..... ....+++.+++|||++++...+++.+.+++++++|
T Consensus 482 ~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n 560 (1389)
T TIGR03443 482 AQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT-TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVN 560 (1389)
T ss_pred CEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc-ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEE
Confidence 99999875 468899999999999999999999999875432 33567888899999999999999998888789999
Q ss_pred ccccccCCcccccCCCCCCc--------ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe
Q psy12852 782 FYGATEGNANLVNMDNTEGA--------VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853 (1102)
Q Consensus 782 ~YG~TE~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~ 853 (1102)
.||+||++++++........ .....+++.+. .+..+.++|++.. ..++|.|++|||+
T Consensus 561 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~ivd~~~~----------~~~~~~G~~GEL~---- 625 (1389)
T TIGR03443 561 MYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGM-KNVQLLVVNRNDR----------TQTCGVGEVGEIY---- 625 (1389)
T ss_pred CccCCccceeEEEEEccccccccchhhcccCcCcCCCcc-CCCEEEEECCccC----------CCcCCCCCceEEE----
Confidence 99999999876643221110 00111222222 3455666665421 2356888888866
Q ss_pred ecCCcccccccCCch-HHHHHHhhcccC----------------------CCCeEEEecceeEEecCccEEEEccCCCeE
Q psy12852 854 QSDPSRHFYGYADKK-ESQKKILENVFK----------------------PGDKYFLSGDMMVMDELGYLYFKDRTGDTY 910 (1102)
Q Consensus 854 ~~G~~~~~~gY~~~~-~t~~~f~~~~~~----------------------~g~~~yrTGDl~~~~~dG~l~~~GR~dd~I 910 (1102)
++|| .++.||+|+| .|.++|+.++|. ++++||+|||+|++++||.|+|+||+||||
T Consensus 626 i~G~-~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~I 704 (1389)
T TIGR03443 626 VRAG-GLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQV 704 (1389)
T ss_pred eccc-ccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEE
Confidence 5688 5899999986 788999876542 347899999999999999999999999999
Q ss_pred EeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC-C--c-------------------------cC
Q psy12852 911 RWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS-N--Q-------------------------VD 962 (1102)
Q Consensus 911 ki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~-~--~-------------------------~~ 962 (1102)
|++|+||+|.|||++|.+||+|.+++|++.+.. .+...+++|+++. . . ..
T Consensus 705 ki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~--~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1389)
T TIGR03443 705 KIRGFRIELGEIDTHLSQHPLVRENVTLVRRDK--DEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKL 782 (1389)
T ss_pred EeCcEEecHHHHHHHHHhCcchheeEEEEeeCC--CCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhh
Confidence 999999999999999999999999999875544 3444555555332 1 1 01
Q ss_pred HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCcc
Q psy12852 963 LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPGM 1042 (1102)
Q Consensus 963 ~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1042 (1102)
.++++++++++||.||+|..|+++++||+|+||||||++|+......... ... ..............++.+..+|.+
T Consensus 783 ~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 859 (1389)
T TIGR03443 783 IKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAA--VAK-NRSASAADEEFTETEREIRDLWLE 859 (1389)
T ss_pred HHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhhh--hhc-cccccccCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999998643221100 000 000001111223357778888999
Q ss_pred hhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1043 IIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1043 ~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+|+. .+.++.+++||++|||||+|++|+++|++. |+.+++.++|++|||++||+
T Consensus 860 vl~~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~ 915 (1389)
T TIGR03443 860 LLPNRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAK 915 (1389)
T ss_pred HhCCCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHH
Confidence 9986 356999999999999999999999999875 99999999999999999987
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=696.80 Aligned_cols=550 Identities=19% Similarity=0.191 Sum_probs=429.0
Q ss_pred CCcccchhhcch--HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhh
Q psy12852 496 TNDAAATTVKNL--EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSI 573 (1102)
Q Consensus 496 ~P~~~Av~~~~~--Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il 573 (1102)
+|+++|+.+... |+||+++++++|++|.+.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus 19 ~pd~~a~~~~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l 98 (705)
T PRK06060 19 WYDRPAFYAADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAA 98 (705)
T ss_pred CCCceEEEecCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHH
Confidence 799999986543 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCc
Q psy12852 574 STVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653 (1102)
Q Consensus 574 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PK 653 (1102)
++++++++|++......+.. ..++. ............+.......+++++|++|||||||+||
T Consensus 99 ~~~~~~~vi~~~~~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PK 161 (705)
T PRK06060 99 RNTEPALVVTSDALRDRFQP-------SRVAE----------AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPK 161 (705)
T ss_pred hcCCCcEEEEchHHhhhhcc-------cccch----------hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCc
Confidence 99999999998754432211 01110 01111111111111112346789999999999999999
Q ss_pred eEEeccHHHHHhhhhhh-hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC-CCHhHHHHHHhhccccccc
Q psy12852 654 AAIMPNFKVLLGGQVGK-HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK-FSASNYFRDCAKYKCNAGI 731 (1102)
Q Consensus 654 gV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~-~~~~~l~~~i~~~~vt~~~ 731 (1102)
||+++|+++.+++.+.. ..++++++|++++..|++|..++...++.+|..|+++++.+. +++..+...++++++|+++
T Consensus 162 gV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 241 (705)
T PRK06060 162 AAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLY 241 (705)
T ss_pred EEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEe
Confidence 99999999988876654 467889999999999999998866788999999999999874 7888899999999999999
Q ss_pred ccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccccCCC
Q psy12852 732 YIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGIIPTL 808 (1102)
Q Consensus 732 ~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~ 808 (1102)
++|+++..++.........+++.+++|||++++++.++|.+.+++.+++|.||+||++.++..... ...++|.+.
T Consensus 242 ~~P~~l~~l~~~~~~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~-- 319 (705)
T PRK06060 242 GVPNFFARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVL-- 319 (705)
T ss_pred eHHHHHHHHHHhcccccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccC--
Confidence 999999998876544445678889999999999999999999986799999999999865543321 222334332
Q ss_pred CCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEe
Q psy12852 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLS 888 (1102)
Q Consensus 809 ~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrT 888 (1102)
.++.+.++|++ |. +++.|+.||++ ++|+ .++.||+|++.. ++ .+++||+|
T Consensus 320 -----~~~~v~i~d~~-g~-----------~~~~g~~GEl~----i~g~-~v~~GY~~~~~~---~~-----~~~~~~~T 369 (705)
T PRK06060 320 -----PPYEIRVVAPD-GT-----------TAGPGVEGDLW----VRGP-AIAKGYWNRPDS---PV-----ANEGWLDT 369 (705)
T ss_pred -----CCcEEEEECCC-CC-----------CCCCCCceEEE----Eccc-hhhhhhhCCCcc---cc-----cCCCcEEC
Confidence 34455666654 33 34778877765 5688 488999998742 11 24789999
Q ss_pred cceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcC--CCccC---H
Q psy12852 889 GDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT--SNQVD---L 963 (1102)
Q Consensus 889 GDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~--~~~~~---~ 963 (1102)
||+|++++||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|+++++.. +...+++++.. +...+ .
T Consensus 370 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~--~~~~~~a~vv~~~~~~~~~~~~ 447 (705)
T PRK06060 370 RDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVREST--GASTLQAFLVATSGATIDGSVM 447 (705)
T ss_pred CeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCcc--CCeeEEEEEEeccccCcChHHH
Confidence 99999999999999999999999999999999999999999999999999866543 33344454432 22233 3
Q ss_pred HHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCC-------CCCCceE--EEc--CC---------c
Q psy12852 964 KLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPS-------QISDDLY--VRQ--GS---------E 1023 (1102)
Q Consensus 964 ~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~-------~~~~~~~--~~~--~~---------~ 1023 (1102)
.+++++|+++||.||+|..|+++++||+|+||||||++|++...... ....... ... .. .
T Consensus 448 ~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (705)
T PRK06060 448 RDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQSPTKPIWELSLTEPGSGVRAQRDDLSASNMTIAGGNDG 527 (705)
T ss_pred HHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhccchhhhhhhccCcccCchhhhccccCCCcccCCCCCc
Confidence 57889999999999999999999999999999999999987643110 0000000 000 00 0
Q ss_pred -------e---eecCHHHHHhhhcCCCcchhhh--hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccc
Q psy12852 1024 -------F---VRMTPNTYEKIMNDQPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFS 1090 (1102)
Q Consensus 1024 -------~---~~~~~~~~~~~l~~~~~~~l~~--~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pt 1090 (1102)
. .........+.+...|+.+|+. .+.++.+++||++|||||+|++|.++|++. |+.+++..+|+|||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt 607 (705)
T PRK06060 528 GATLRERLVALRQERQRLVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGS 607 (705)
T ss_pred cHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCC
Confidence 0 0001112234566677888876 346999999999999999999999999876 99999999999999
Q ss_pred cccccC
Q psy12852 1091 LDVMAP 1096 (1102)
Q Consensus 1091 i~~laa 1096 (1102)
+++||+
T Consensus 608 ~~~la~ 613 (705)
T PRK06060 608 ISGLAQ 613 (705)
T ss_pred HHHHHH
Confidence 998874
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-67 Score=643.35 Aligned_cols=550 Identities=41% Similarity=0.704 Sum_probs=446.5
Q ss_pred hhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 480 DVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 480 ~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
.+..+.|.+ +++++|+++|+++++. |+||.++++++|+.|.+.|+++|++|+|+++|+.++++++|||+++|++
T Consensus 37 ~tl~~~l~~---~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~ 113 (600)
T PRK08279 37 RSLGDVFEE---AAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAV 113 (600)
T ss_pred ccHHHHHHH---HHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence 344455554 4889999999988664 9999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCC--CCCChhHhhc---cCCCCCCCCC
Q psy12852 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKP--DLPNLSDLMK---TTPASEVKPS 631 (1102)
Q Consensus 557 ~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~ 631 (1102)
++|+++.++.+++.+++++++++++|++.+..+.+............+....... ....+.++.. ..+.......
T Consensus 114 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (600)
T PRK08279 114 VALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR 193 (600)
T ss_pred EeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCCcc
Confidence 9999999999999999999999999999887776666544433322222221110 0111222221 1111111122
Q ss_pred CCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 632 EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 632 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
....++++++|+|||||||.||||++||+++.+++.+....++++++|++++.+|++|..++...++.++..|+++++.+
T Consensus 194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 273 (600)
T PRK08279 194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR 273 (600)
T ss_pred cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC
Confidence 34567899999999999999999999999999999988888999999999999999999997777888899999999998
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
.+++..+++.++++++|++.++|++++.++...........++++++|++++++++++|.+.++...++|.||+||+++.
T Consensus 274 ~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~ 353 (600)
T PRK08279 274 KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVG 353 (600)
T ss_pred CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEEecCCCCHHHHHHHHHHhCcceeeeeeccccccee
Confidence 89999999999999999999999999998876544333345666778999999999999999987679999999999876
Q ss_pred cccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHH
Q psy12852 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQ 871 (1102)
Q Consensus 792 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~ 871 (1102)
++......+++|.++.... .+..+..++.++|.++.+. ++.+..++.|+.||++++ +.|+ .++.||.++..+.
T Consensus 354 ~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~i~~~-~~~~~~~~~g~~Gel~~~--i~~~-~~~~GY~~~~~t~ 426 (600)
T PRK08279 354 FINVFNFDGTVGRVPLWLA---HPYAIVKYDVDTGEPVRDA-DGRCIKVKPGEVGLLIGR--ITDR-GPFDGYTDPEASE 426 (600)
T ss_pred ecccCCCCccccccccccc---ccceeeeeccCcCceeeCC-CCccccCCCCCceeEEEE--ecCc-ccccccCCchhhH
Confidence 5544444555665432111 1455667777778887765 445567899999999855 4566 4788995555788
Q ss_pred HHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeE
Q psy12852 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951 (1102)
Q Consensus 872 ~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l 951 (1102)
++|+.+++.++++||+|||+|++++||.++|+||.||+||++|+||+|.|||++|.++|+|.+|+|++++.+...+...+
T Consensus 427 ~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~ 506 (600)
T PRK08279 427 KKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGM 506 (600)
T ss_pred HHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccce
Confidence 88888777777899999999999999999999999999999999999999999999999999999999887665555555
Q ss_pred EEEEcC-CCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcC--CceeecC
Q psy12852 952 IAIVDT-SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQG--SEFVRMT 1028 (1102)
Q Consensus 952 ~~~v~~-~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~ 1028 (1102)
++++.. +...+.++++++|+++||.||+|..|+++++||+|+|||+||++|+++........+..|..+. ..+.++.
T Consensus 507 ~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (600)
T PRK08279 507 AAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGSGGYVPLT 586 (600)
T ss_pred eEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecCCCceEecC
Confidence 555533 4567889999999999999999999999999999999999999999999888767778888776 5677888
Q ss_pred HHHHHhhhcCC
Q psy12852 1029 PNTYEKIMNDQ 1039 (1102)
Q Consensus 1029 ~~~~~~~l~~~ 1039 (1102)
.+.+.++-...
T Consensus 587 ~~~~~~~~~~~ 597 (600)
T PRK08279 587 AELYAEIAAGK 597 (600)
T ss_pred HHHHHHHhcCc
Confidence 88877766543
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=565.52 Aligned_cols=555 Identities=46% Similarity=0.780 Sum_probs=502.9
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch-----HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL-----EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~-----Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+.+..|.. +|+++|+++|+++.+. |+|+++.++++|+.|...|++.||.|+++|+|+++++..+||..|+|+
T Consensus 78 ti~~~F~~---~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv 154 (649)
T KOG1179|consen 78 TIAELFLS---QVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGV 154 (649)
T ss_pred cHHHHHHH---HHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCc
Confidence 34444444 6999999999999873 999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC--ceEEEecCC--CCCCCChhHhhccCCCCC-C-C
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDET--KPDLPNLSDLMKTTPASE-V-K 629 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~-~ 629 (1102)
+...|+++...+-+.|.++.++++++|++++..+.+.++...+.. +..+..+.. .++..++...++..+..+ + .
T Consensus 155 ~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp~~ 234 (649)
T KOG1179|consen 155 ITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVPVS 234 (649)
T ss_pred eeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCCcc
Confidence 999999999999999999999999999999998887776433322 444444322 233344444444433333 1 2
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
.....+-.++++.||||||||.||..+++|.-...........++++++|+++..+|++|.++.+..+..++..|+|+++
T Consensus 235 ~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl 314 (649)
T KOG1179|consen 235 TRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL 314 (649)
T ss_pred cCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence 23456667899999999999999999999999988888788899999999999999999999999999999999999999
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
-.+|+...+|+.+.++++|+......+.+.|++.+..+....+++++..|..+.++.++.|.++|+..++.+.||+||..
T Consensus 315 rkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn 394 (649)
T KOG1179|consen 315 RKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGN 394 (649)
T ss_pred ecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCc
Confidence 99999999999999999999999999999999999998889999999999999999999999999988899999999999
Q ss_pred cccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc-h
Q psy12852 790 ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK-K 868 (1102)
Q Consensus 790 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~-~ 868 (1102)
+..++++...+.+|..+...+.. .|..++.+|+++|++++|+ .|.|.+|++|+||.+++.|.-..|..-|.||.++ .
T Consensus 395 ~~~~N~d~~vGA~G~~~~~~~~l-~p~~LIk~D~~t~E~iRd~-~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~ 472 (649)
T KOG1179|consen 395 SNLVNYDGRVGACGFMSRLLKLL-YPFRLIKVDPETGEPIRDS-QGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKK 472 (649)
T ss_pred ceeeeecCccccccchhhhhhhc-cceEEEEecCCCCceeecC-CceEEECCCCCCceEEEEeccCCchhhhccccCchh
Confidence 99999999999999988877777 9999999999999999888 8999999999999999999888887789999995 5
Q ss_pred HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCc
Q psy12852 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGR 948 (1102)
Q Consensus 869 ~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~ 948 (1102)
+|.++.++|.|..|+-||.|||+-.+|+.|++||..|.-|.+.-.|++|+..|||.+|..+.+++|+.|.|+..++.+|+
T Consensus 473 ~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGR 552 (649)
T KOG1179|consen 473 ATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGR 552 (649)
T ss_pred hhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcC--Ccee
Q psy12852 949 AGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQG--SEFV 1025 (1102)
Q Consensus 949 ~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~--~~~~ 1025 (1102)
..+++++ .++.+.+.+.+-+++++.||+|.+|.++.+.+++++|.+-|..+..|.+..+++...+|+.|+.++ ..+.
T Consensus 553 aGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~egf~p~~~~dply~~~~~~~~y~ 632 (649)
T KOG1179|consen 553 AGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKEGFNPAIISDPLYYLDNAGKSYV 632 (649)
T ss_pred cceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHccCCccccCCceEEEeccCCccc
Confidence 9999999 777789999999999999999999999999999999999999999999999999999999999988 4479
Q ss_pred ecCHHHHHhhhcCCC
Q psy12852 1026 RMTPNTYEKIMNDQP 1040 (1102)
Q Consensus 1026 ~~~~~~~~~~l~~~~ 1040 (1102)
+++.+.++++....+
T Consensus 633 Plt~~~y~~i~~g~~ 647 (649)
T KOG1179|consen 633 PLTQEMYSAISAGEL 647 (649)
T ss_pred cCCHHHHHHHhcCcc
Confidence 999999998877655
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=596.82 Aligned_cols=473 Identities=25% Similarity=0.337 Sum_probs=390.2
Q ss_pred cchhhcc------hHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhh
Q psy12852 500 AATTVKN------LEAQIDEYSNKIARILQDDG--FKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVH 571 (1102)
Q Consensus 500 ~Av~~~~------~Y~eL~~~a~~lA~~L~~~g--v~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~ 571 (1102)
+++++.. +|+|+.+++.++|.+|.+.| +++||+|++++||+++++..++||+.+|+++.|++|.+....+.+
T Consensus 34 ~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~ 113 (537)
T KOG1176|consen 34 TSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAK 113 (537)
T ss_pred ceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHH
Confidence 5555444 39999999999999999876 899999999999999999999999999999999999999999999
Q ss_pred hhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCC----------hhHhhccCCCCCCCCCCCCCCCCeEE
Q psy12852 572 SISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN----------LSDLMKTTPASEVKPSEPLQTSDSLL 641 (1102)
Q Consensus 572 il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~a~ 641 (1102)
.++++++++++++....+.+......+. .+++++.... +... +........... ......+|++.
T Consensus 114 ~~~~s~~kiif~d~~~~~~i~~~~~~~~-~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dd~~~ 188 (537)
T KOG1176|consen 114 QLKDSKPKLIFVDEDFYDKISEATSKLA-LKIIVLTGDE-GVISISDLVEDLDAFEDLMPEGLPDG---IRPVSEDDTAA 188 (537)
T ss_pred HHHhcCCeEEEEcCchHHHHHHHHhhcC-CceEEEeccc-CccccccccccccchhhccccCCCcc---cccCCCCCeEE
Confidence 9999999999999999998887766554 4444444321 1111 111111111111 35667799999
Q ss_pred EEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHH
Q psy12852 642 YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRD 721 (1102)
Q Consensus 642 ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~ 721 (1102)
|+|||||||.||||++||+++..+.........++..|+.++.+|++|..|+...+...+..|+++++.+.+++..+++.
T Consensus 189 il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~ 268 (537)
T KOG1176|consen 189 ILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL 268 (537)
T ss_pred EecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH
Confidence 99999999999999999999999888777777788899999999999999944444446666666666677899999999
Q ss_pred HhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC--C
Q psy12852 722 CAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD--N 797 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~ 797 (1102)
|++|++|+++++|.++..|++.+.. ....+++.+.+||.++++++++++.+++|...+.++||+||++..++... .
T Consensus 269 i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~ 348 (537)
T KOG1176|consen 269 IEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP 348 (537)
T ss_pred HHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc
Confidence 9999999999999999999997633 34456666778999999999999999999779999999999996554332 2
Q ss_pred --CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchH-HHHHH
Q psy12852 798 --TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE-SQKKI 874 (1102)
Q Consensus 798 --~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~-t~~~f 874 (1102)
.++++|.+.+ ..-.++++++|..+ +++..||++ ++|+ +++.||+++|+ |.+.|
T Consensus 349 e~k~~svG~~~~--------g~~~~v~~e~g~~l-----------~~~~~GEI~----vrg~-~imkGY~~NpeaT~~~~ 404 (537)
T KOG1176|consen 349 ERKPGSVGRLLP--------GVRVKVLDETGVSL-----------GPNQTGEIC----VRGP-QVMKGYLKNPEATKEAF 404 (537)
T ss_pred cCcccccCcccc--------ceEEEeeCCCCCCC-----------CCCCceEEE----EECc-ccchhhcCChHHHHhhc
Confidence 4566666532 33445566666544 777777755 5688 58999999885 44455
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
- .+|||+|||+|++|+||+|++++|++|+||.+|+.|.|.|||++|..||.|.||+|++++++. .|+...+++
T Consensus 405 ~------~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~-~Ge~p~A~V 477 (537)
T KOG1176|consen 405 D------DDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEV-WGETPAAFV 477 (537)
T ss_pred c------cCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccc-cCCcceEEE
Confidence 3 259999999999999999999999999999999999999999999999999999999988776 677777777
Q ss_pred Ec-CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 955 VD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 955 v~-~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+. .+..+++++|+++++++||+|++|..++++++||+|+||||.|+.|++.+..
T Consensus 478 V~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~ 532 (537)
T KOG1176|consen 478 VLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKK 532 (537)
T ss_pred EecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHh
Confidence 74 4678999999999999999999999999999999999999999999987654
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=543.18 Aligned_cols=498 Identities=21% Similarity=0.268 Sum_probs=403.4
Q ss_pred cchhhhHHHHHHHHhhcccCCcccchhhcch-----HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHH
Q psy12852 477 LEVDVTYSRFKQEASNARSTNDAAATTVKNL-----EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551 (1102)
Q Consensus 477 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~-----Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l 551 (1102)
....+.-+.+.. .+++.||+.|.++... |+|+.+.+.++|..|.+.|+++||+|+|..||+.+|+..+|||.
T Consensus 47 l~~~Tigq~l~~---~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A 123 (596)
T KOG1177|consen 47 LDSETIGQLLET---TTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACA 123 (596)
T ss_pred cccccHHHHHHH---HhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHH
Confidence 333444455544 4888999999886542 99999999999999999999999999999999999999999999
Q ss_pred HcCceEeecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhc-------------CCCce-EEEecCC--C
Q psy12852 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRES-------------IPDVK-LFLLDET--K 610 (1102)
Q Consensus 552 ~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~~~~~-~~~~~~~--~ 610 (1102)
++|.+.++++|.|+.+++++.|+..+++++++...+. +.+.++..+ +|... ++..+++ -
T Consensus 124 ~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~ 203 (596)
T KOG1177|consen 124 RAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPL 203 (596)
T ss_pred HhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcC
Confidence 9999999999999999999999999999999976543 333333322 23333 3333322 2
Q ss_pred CCCCChhHhhccCCCCC----CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecC
Q psy12852 611 PDLPNLSDLMKTTPASE----VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686 (1102)
Q Consensus 611 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p 686 (1102)
++...+++.+....... ........|+|++.|.|||||||.|||+.+||.|++|+......++++++++|++...|
T Consensus 204 ~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~P 283 (596)
T KOG1177|consen 204 PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNP 283 (596)
T ss_pred CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCc
Confidence 56667777776555432 12235678899999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhHhhcCceEEEeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccCCcccc--ccceeeeeccCCC
Q psy12852 687 MYHSAGGLIGTIPALILGSSIAIRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADY--SHQVVKMIGVGMR 763 (1102)
Q Consensus 687 l~~~~~~~~~i~~~l~~G~~lv~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~--~l~~~~~~Ge~l~ 763 (1102)
++|.+|++..++.+|..|+|++++.+ +++.+.++.|.++++|.++.+|+++..|++.+...... +++-.++||++++
T Consensus 284 l~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s 363 (596)
T KOG1177|consen 284 LYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVS 363 (596)
T ss_pred hHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCC
Confidence 99999999999999999999999765 99999999999999999999999999999887765544 4555688999999
Q ss_pred HHHHHHHHHHhCcchhhhccccccCCcccccCCCC------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccc
Q psy12852 764 GDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837 (1102)
Q Consensus 764 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~ 837 (1102)
+++++.+.+......+...||+||++...+..... ..++|... ......++|.. |.
T Consensus 364 ~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m-------~h~Ea~iv~~~-g~---------- 425 (596)
T KOG1177|consen 364 PELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLM-------DHYEAAIVDKD-GS---------- 425 (596)
T ss_pred HHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcc-------cccccccccCC-CC----------
Confidence 99999999877655688999999999766533211 12344432 23333344422 33
Q ss_pred ccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceee
Q psy12852 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917 (1102)
Q Consensus 838 ~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri 917 (1102)
.+|.|.+||++.+ |. ..+.|||+++..++..+. .++||+|||+|++|++|.++++||.+|+|+.+|.+|
T Consensus 426 -~v~~~~~Gel~iR----GY-~tMl~Ywg~~~kT~eti~-----~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENV 494 (596)
T KOG1177|consen 426 -EVPLGTKGELLIR----GY-STMLGYWGEEEKTKETIG-----NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENV 494 (596)
T ss_pred -ccccCCCceEEEE----ec-hhheeecCCcccchhhcc-----cccceecCceEEEcCCCcEEEEEcccCeEEeCCccc
Confidence 4478888887755 66 478899998744443333 389999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEc-CC--CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCC
Q psy12852 918 STMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD-TS--NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGT 994 (1102)
Q Consensus 918 ~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~-~~--~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~ 994 (1102)
+|.|||+.|-+||.|.++.|+++++.. -|+..++++-. .+ .....++|+.+|+.+|..|++|++|+++++||+|.+
T Consensus 495 yP~ElE~fL~~hp~V~~a~VVGV~D~R-~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~t 573 (596)
T KOG1177|consen 495 YPTELEDFLNKHPLVKEAHVVGVPDER-LGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTT 573 (596)
T ss_pred ChHHHHHHHhhCCCeeeEEEEccCCCc-ccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCccccc
Confidence 999999999999999999999976654 44444444432 11 126899999999999999999999999999999999
Q ss_pred ccchhhhhhhcCC
Q psy12852 995 FKIKKIQLQNEGF 1007 (1102)
Q Consensus 995 GKidr~~L~~~~~ 1007 (1102)
|||.|-+++++..
T Consensus 574 GKIqKFeir~~~k 586 (596)
T KOG1177|consen 574 GKIQKFEIREMSK 586 (596)
T ss_pred ccchhHHHHHHHH
Confidence 9999999998754
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-64 Score=603.32 Aligned_cols=493 Identities=26% Similarity=0.361 Sum_probs=402.1
Q ss_pred hHHHHHHHHhhcccCCcccchhhc-----chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVK-----NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~-----~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
++..+... +++.+|+++|+.+. -+|+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|++
T Consensus 12 ~~~~~l~~--~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav 89 (534)
T COG0318 12 TLASLLER--AARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAV 89 (534)
T ss_pred cHHHHHHH--HHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEE
Confidence 34444444 58999999999863 349999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCC--CChhHhhccCCCCCCCCCCCC
Q psy12852 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDL--PNLSDLMKTTPASEVKPSEPL 634 (1102)
Q Consensus 557 ~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 634 (1102)
++|++|.+...++.++++++++++++++....+....+....+....+......... ..+.............. ...
T Consensus 90 ~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (534)
T COG0318 90 AVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADA-RPV 168 (534)
T ss_pred EeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCccccc-CCC
Confidence 999999999999999999999999999988666666555444333322222211111 23444433222222221 226
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC--CCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC-
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS--LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT- 711 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~- 711 (1102)
+++|+|+++|||||||.||||++||+|+..+.......++ ++++|+++.++|++|..|+...++.++..|+++++.+
T Consensus 169 ~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~ 248 (534)
T COG0318 169 DPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP 248 (534)
T ss_pred CCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCC
Confidence 7999999999999999999999999999999888888888 8999999999999999997777777799999999998
Q ss_pred -CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcccc---ccceeeeeccCCCHHHHHHHHHHhCcchhhhcccccc
Q psy12852 712 -KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADY---SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787 (1102)
Q Consensus 712 -~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~---~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 787 (1102)
.+++..++..+.++++|++.++|+++..|+.++...... .+|+++.||++++++++++|.++++...+++.||+||
T Consensus 249 ~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE 328 (534)
T COG0318 249 EPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTE 328 (534)
T ss_pred CCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccc
Confidence 599999999999999999999999999999887664433 3888899999999999999999998658999999999
Q ss_pred CCcccccCCCC-----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccc
Q psy12852 788 GNANLVNMDNT-----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862 (1102)
Q Consensus 788 ~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~ 862 (1102)
++..++..... .+..|.+. ..+.+.++|++++.++ | |.+|| |+++|| .++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~G~~~-------pg~~v~Ivd~~~~~~~-----------p-g~vGe----i~irgp-~v~~ 384 (534)
T COG0318 329 TSPVVTINPPDDLLAKPGSVGRPL-------PGVEVRIVDPDGGEVL-----------P-GEVGE----IWVRGP-NVMK 384 (534)
T ss_pred cCceeecCCCchhhhcCCcccccC-------CCcEEEEEeCCCCccC-----------C-CCceE----EEEECc-hhhh
Confidence 99766544322 23333332 3467777887755322 3 55454 667799 5899
Q ss_pred ccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEE
Q psy12852 863 GYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941 (1102)
Q Consensus 863 gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~ 941 (1102)
||+|+| .|.+.| .+ ++||+|||+|++|+||.++|+||.+|+||++|++|+|.|||.++.+||.|.+++|++++
T Consensus 385 GY~~~pe~t~~~f-~~-----~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvp 458 (534)
T COG0318 385 GYWNRPEATAEAF-DE-----DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVP 458 (534)
T ss_pred hhcCChHHHHHhh-cc-----CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCC
Confidence 999996 555534 32 59999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCCceeEEEEEcCC---CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 942 VGDLDGRAGMIAIVDTS---NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 942 ~~~~~~~~~l~~~v~~~---~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++. .|+..+++++..+ ...+.++|+++|+++++.|++|+.+++++++|+|++||++|+.|++....
T Consensus 459 d~~-~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 459 DER-WGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CCc-cCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 654 5566665655433 23489999999999999999999999999999999999999999986543
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=574.66 Aligned_cols=472 Identities=21% Similarity=0.274 Sum_probs=378.1
Q ss_pred CCcccchhhcc--------hHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 496 TNDAAATTVKN--------LEAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 496 ~P~~~Av~~~~--------~Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
.++++|+++.+ +|++|.+.++++|+.|++ .|+ +||+|+|++|+.++.++++|||+|+||+++|+.+.+++
T Consensus 23 ~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~ 101 (528)
T COG0365 23 RPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSA 101 (528)
T ss_pred CCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCH
Confidence 38899988763 299999999999999987 568 99999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHH------HhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeE
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAI------RESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSL 640 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 640 (1102)
+.+++.+++++++++|+.+......+.. ...+.. +++..... ..+.+........... .+...+|++
T Consensus 102 ~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~--~iv~~r~~---~~~~~~~~~~~~~~~~--~~~~~~dpl 174 (528)
T COG0365 102 EAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS--VVVVPRLG---LWYDEAVEKASEKFEF--EPLPADDPL 174 (528)
T ss_pred HHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc--eEEecccc---ccHHHHhhccCCCCCc--cccCCCCeE
Confidence 9999999999999999988765433221 111111 33333322 5555555544333222 348899999
Q ss_pred EEEECCCCCCCCceEEeccHHHHHhh-hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC--C-CHh
Q psy12852 641 LYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK--F-SAS 716 (1102)
Q Consensus 641 ~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~--~-~~~ 716 (1102)
+|+|||||||+||||+++|+++.... ......+.+.++|++++.+++.|..|....++.+|.+|+++++.+. + +++
T Consensus 175 ~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~ 254 (528)
T COG0365 175 FLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPE 254 (528)
T ss_pred EEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHH
Confidence 99999999999999999999776654 4445678888999999999999999988889999999999999875 3 399
Q ss_pred HHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc
Q psy12852 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN 794 (1102)
Q Consensus 717 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 794 (1102)
.+++.|+++++|++++.|+.+++|.+... .....++|.+...||+++++.++.+.+.++. .+.+.||.||++.+...
T Consensus 255 ~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~-~i~d~~gqTEtg~~~~~ 333 (528)
T COG0365 255 RLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGFIA 333 (528)
T ss_pred HHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHhCC-CEeccccccccCccccC
Confidence 99999999999999999999999998874 2334467777777999999999999999984 99999999999954443
Q ss_pred CCC--CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHH
Q psy12852 795 MDN--TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQ 871 (1102)
Q Consensus 795 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~ 871 (1102)
... .+++.|.+. ..+.+.++|++ |+++ ++|+ |+|+.+ ..-| .++.||++++ ...
T Consensus 334 ~~~~~~~g~~g~p~-------pG~~~~vvdd~-g~~~-----------~~~~-G~Lvi~--~~~p-~~~~~~w~d~er~~ 390 (528)
T COG0365 334 GRPPVKNGSSGLPL-------PGYAVRRVDDE-GNPV-----------PPGV-GELVVR--LPWP-GMALTYWNDPERYK 390 (528)
T ss_pred CCCCcCCCCCCCCC-------CCceeEEECCC-CCcC-----------CCCc-eEEEEe--CCCc-hhhhhhhCCHHHHH
Confidence 322 344445553 34456677776 6544 7777 888743 4445 5788999997 334
Q ss_pred HHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeE
Q psy12852 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951 (1102)
Q Consensus 872 ~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l 951 (1102)
+.+. ++||.|||.+++|+||+++|+||.||+||+.|+||.+.|||++|.+||+|.||+||+++++. .|+...
T Consensus 391 ~~y~-------~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~-kg~~v~ 462 (528)
T COG0365 391 EAYF-------GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPG-KGQIVL 462 (528)
T ss_pred HHHh-------hceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCC-CCcEEE
Confidence 4343 23999999999999999999999999999999999999999999999999999999977764 556544
Q ss_pred EEEEcCCC-c--cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 952 IAIVDTSN-Q--VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 952 ~~~v~~~~-~--~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
++++..+. . .-.++|++++++.+.+|+.|+.|+++++||+|.||||.|+.|++...
T Consensus 463 afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 463 AFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred EEEEecCCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 44442221 1 23566777787777779999999999999999999999999998754
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=603.86 Aligned_cols=482 Identities=24% Similarity=0.292 Sum_probs=392.3
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +|+++|+++|+++++. |+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 50 ~~~~~~~~--~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 127 (549)
T PRK07788 50 PFAGLVAH--AARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII 127 (549)
T ss_pred hHHHHHHH--HHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEE
Confidence 34444444 6899999999998664 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC-----CCCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK-----PDLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
|+++.++.+++.+++++++++++|++++....+..+....+.+..+...... .....++++........ .+
T Consensus 128 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 203 (549)
T PRK07788 128 LLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAP----LP 203 (549)
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCC----CC
Confidence 9999999999999999999999999988777665554444444444332111 23345555544322111 22
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKF 713 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~ 713 (1102)
..+++.++++|||||||+||||+++|+++.+.+......+++.++|+++...|++|..+ +..++.++..|+++++...+
T Consensus 204 ~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g-~~~~~~~l~~G~~~v~~~~~ 282 (549)
T PRK07788 204 KPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATG-WAHLTLAMALGSTVVLRRRF 282 (549)
T ss_pred CCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHH-HHHHHHHHHhCCEEEECCCC
Confidence 34568899999999999999999999999998888888889999999999999999998 66788899999999999889
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
++..+++.++++++|++.++|++++.|+..... ....+++.+++||+++++++.++|.+.++. .++|.||+||++
T Consensus 283 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~~ 361 (549)
T PRK07788 283 DPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGP-VLYNLYGSTEVA 361 (549)
T ss_pred CHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCc-cceeccCcchhc
Confidence 999999999999999999999999999876432 234577888999999999999999999876 799999999998
Q ss_pred cccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 790 ANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 790 ~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
..++.... .++++|.+. .++.+.++|++ +. +++.|++||++ +.|+ .++.||+
T Consensus 362 ~~~~~~~~~~~~~~~~vG~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~g~-~~~~gY~ 417 (549)
T PRK07788 362 FATIATPEDLAEAPGTVGRPP-------KGVTVKILDEN-GN-----------EVPRGVVGRIF----VGNG-FPFEGYT 417 (549)
T ss_pred hhhccChhhhhhcCCCcccCC-------CCcEEEEECCC-cC-----------CCCCCCeEEEE----EeCC-Ccccccc
Confidence 66543221 223444432 33455556654 43 34667777766 5577 4788999
Q ss_pred CchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 866 ~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
+++.. .+ .++||+|||+|++++||+++|.||+||+||++|+||+|.|||++|.++|+|.+++|++++++.
T Consensus 418 ~~~~~--~~-------~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~- 487 (549)
T PRK07788 418 DGRDK--QI-------IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEE- 487 (549)
T ss_pred CCCcc--cc-------cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcc-
Confidence 88643 11 267999999999999999999999999999999999999999999999999999999865543
Q ss_pred CCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 946 DGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 946 ~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
.++...++++ ..+...+.++++++++++||.|++|..|+++++||+|+||||||++|+++
T Consensus 488 ~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 488 FGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred cccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 3333333333 33445788999999999999999999999999999999999999999864
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=603.14 Aligned_cols=495 Identities=21% Similarity=0.317 Sum_probs=393.6
Q ss_pred hhHHHHHHHHhhcccCCcccchhhc-----------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVK-----------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~-----------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
++.+.|.+ +|+++|+++|+.+. -+|+||.++++++|+.|++.|+++|++|+++++|++++++++||
T Consensus 26 t~~~~l~~---~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA 102 (632)
T PRK07529 26 STYELLSR---AAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG 102 (632)
T ss_pred CHHHHHHH---HHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 44555544 48899999999752 12999999999999999999999999999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcc-----hhHHHHHHhcCCCce-EEEecCCC-------------
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY-----YPEIEAIRESIPDVK-LFLLDETK------------- 610 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~------------- 610 (1102)
|+++| +++|+++.++.+++.+++++++++++|++... .+.+.......+..+ ++.++...
T Consensus 103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 181 (632)
T PRK07529 103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLI 181 (632)
T ss_pred HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccccc
Confidence 99999 56999999999999999999999999997653 233333334444433 33333211
Q ss_pred -----CCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEec
Q psy12852 611 -----PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685 (1102)
Q Consensus 611 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~ 685 (1102)
.+...+.+.+...+...........++++++|+|||||||.||||++||+++.++.......+++.++|++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 261 (632)
T PRK07529 182 RRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGL 261 (632)
T ss_pred ccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 112344444433322221112344679999999999999999999999999998887777788889999999999
Q ss_pred CchhhhhHHHHHHhHhhcCceEEEeCC--C-C---HhHHHHHHhhcccccccccHHHHHHHHhccCCc-cccccceeeee
Q psy12852 686 PMYHSAGGLIGTIPALILGSSIAIRTK--F-S---ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE-ADYSHQVVKMI 758 (1102)
Q Consensus 686 pl~~~~~~~~~i~~~l~~G~~lv~~~~--~-~---~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-~~~~l~~~~~~ 758 (1102)
|++|..+.+..++.+|..|+++++.++ + + ...+++.++++++|++.++|+++..|+..+... ...+++.+++|
T Consensus 262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~slr~v~~g 341 (632)
T PRK07529 262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISSLRYALCG 341 (632)
T ss_pred CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccCCCccceEEEEEc
Confidence 999999978889999999999999864 1 2 367889999999999999999999998765432 44578888999
Q ss_pred ccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCC
Q psy12852 759 GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKT 834 (1102)
Q Consensus 759 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~ 834 (1102)
|+++++++.++|.+.++. +++|.||+||++.+++.... ..+++|.+.+ +..+.++.+|++ |..
T Consensus 342 g~~l~~~l~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p-----~~~v~i~~~d~~-g~~------ 408 (632)
T PRK07529 342 AAPLPVEVFRRFEAATGV-RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLP-----YQRVRVVILDDA-GRY------ 408 (632)
T ss_pred CCCCCHHHHHHHHHHhCC-cEeeeecccccCcccccCCccccccCCCcccccC-----CceEEEEEcCCC-Ccc------
Confidence 999999999999998865 89999999999877654432 2334444432 244555555654 321
Q ss_pred cccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCc
Q psy12852 835 GLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914 (1102)
Q Consensus 835 ~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G 914 (1102)
.++++.|+.||++ ++|| .++.||++++.+...|. +++||+|||+|++++||.+++.||+||+||++|
T Consensus 409 --~~~~~~g~~Gel~----v~gp-~v~~GY~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G 475 (632)
T PRK07529 409 --LRDCAVDEVGVLC----IAGP-NVFSGYLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGG 475 (632)
T ss_pred --cccCCCCCceEEE----EECC-CccccccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCC
Confidence 2456888888766 5588 58899999876665554 378999999999999999999999999999999
Q ss_pred eeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCC-CCCcceEEEEecCccCC
Q psy12852 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLP-AYARPLFVRIMKAIEMT 992 (1102)
Q Consensus 915 ~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp-~~~~P~~i~~l~~lP~t 992 (1102)
++|+|.|||++|.+||+|.+|+|++.+++. .++..+++++ .++...+.++++++++++|+ .+++|..|+++++||+|
T Consensus 476 ~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~-~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t 554 (632)
T PRK07529 476 HNIDPAAIEEALLRHPAVALAAAVGRPDAH-AGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKT 554 (632)
T ss_pred EEECHHHHHHHHHhCCCeeEEEEEeccCCC-CCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCC
Confidence 999999999999999999999999966554 3444444443 34456778999999999997 58999999999999999
Q ss_pred CCccchhhhhhhcC
Q psy12852 993 GTFKIKKIQLQNEG 1006 (1102)
Q Consensus 993 ~~GKidr~~L~~~~ 1006 (1102)
++|||+|++|++..
T Consensus 555 ~~GKi~r~~Lr~~~ 568 (632)
T PRK07529 555 AVGKIFKPALRRDA 568 (632)
T ss_pred CCCcccHHHHHHHH
Confidence 99999999998764
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=602.37 Aligned_cols=495 Identities=18% Similarity=0.173 Sum_probs=382.8
Q ss_pred HHHHHHHHhhcccCCcccchhhc------c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHc
Q psy12852 483 YSRFKQEASNARSTNDAAATTVK------N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~------~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~a 553 (1102)
...+.+ ++..+|+++|+++. . +|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 55 ~~~l~~---~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~ 131 (628)
T TIGR02316 55 HNALDR---HLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARI 131 (628)
T ss_pred HHHHHH---HhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 444444 47789999999862 1 39999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCCchhhhhhhhccCceEEEEcCcc---------hhHHHHHHhcC--CCceEEEecCCCC-------CCCC
Q psy12852 554 GVISALINTNLKKQPLVHSISTVKSKAIIVSALY---------YPEIEAIRESI--PDVKLFLLDETKP-------DLPN 615 (1102)
Q Consensus 554 G~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~ 615 (1102)
|++++|+++.++.+++.+++++++++++|+++.. .+.+....... ....++.++.... ....
T Consensus 132 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 211 (628)
T TIGR02316 132 GAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVD 211 (628)
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCcccc
Confidence 9999999999999999999999999999997643 12222222211 1234555543210 1123
Q ss_pred hhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHH-hhhhhhhccCCCCCcEEEEecCchhhhhHH
Q psy12852 616 LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGDVIYNCLPMYHSAGGL 694 (1102)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 694 (1102)
+.++...... ...+.....+++++||+|||||||.||||+++|+++.. ........++++++|++++.+|++|+.+..
T Consensus 212 ~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~ 290 (628)
T TIGR02316 212 YAALRTQHED-AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHS 290 (628)
T ss_pred HHHHhhcccc-CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhh
Confidence 3333332111 11111235678999999999999999999999999754 445556678899999999999999999877
Q ss_pred HHHHhHhhcCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHH
Q psy12852 695 IGTIPALILGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDI 766 (1102)
Q Consensus 695 ~~i~~~l~~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~ 766 (1102)
+.++.+|+.|+++++.+. .++..+++.|+++++|+++++|++++.|.+.... ....++|.+++|||++++++
T Consensus 291 ~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~ 370 (628)
T TIGR02316 291 YIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPT 370 (628)
T ss_pred HHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHH
Confidence 889999999999999873 5789999999999999999999999998775421 23457888899999999999
Q ss_pred HHHHHHHhCcchhhhccccccCCcccccCC-------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccc
Q psy12852 767 WAKFVKRFHVQTIIEFYGATEGNANLVNMD-------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839 (1102)
Q Consensus 767 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~ 839 (1102)
.+.+.+.++. .+++.||+||++..++... ...+++|.+. ..+.+.++|+++|+++
T Consensus 371 ~~~~~~~~~~-~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~-------~g~~v~i~d~~~g~~~---------- 432 (628)
T TIGR02316 371 AHWITDGLGK-PVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPM-------YGYHLRVLDEATGRPC---------- 432 (628)
T ss_pred HHHHHHHhCC-CEEecccccccCceeecCCCCCCcCCCCCCCcccCc-------CCceEEEEECCCCCCC----------
Confidence 9999888875 8999999999985443221 1123333332 3455666776556544
Q ss_pred ccCCCCcceEEEEeecCCc--ccccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCcee
Q psy12852 840 CKYNQPGMIIGEIKQSDPS--RHFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916 (1102)
Q Consensus 840 ~~~g~~Gel~gei~~~G~~--~~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~r 916 (1102)
+.|+.||++ +.||. ..+.||++++. +.+.++.. .+++||+|||+|++|+||+++|+||+||+||++|+|
T Consensus 433 -~~g~~Gel~----v~gp~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~r 504 (628)
T TIGR02316 433 -GPNEKGVLT----VVPPLPPGCLSTVWGDDARFLKTYWSH---FKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHR 504 (628)
T ss_pred -CCCCcEEEE----EecCCCccccccccCChHHHHHhhhhc---CCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEE
Confidence 677888776 44652 46778888763 33333211 136899999999999999999999999999999999
Q ss_pred echHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC-Cc--------cCHHHHHHHHHccCCCCCcceEEEEec
Q psy12852 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS-NQ--------VDLKLLVQGLDANLPAYARPLFVRIMK 987 (1102)
Q Consensus 917 i~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~-~~--------~~~~~l~~~l~~~Lp~~~~P~~i~~l~ 987 (1102)
|+|.|||++|.+||+|.+|+|++++++. .++..+++++... .. ...++|+++++++||+|++|+.|++++
T Consensus 505 v~~~eIE~~l~~~p~V~ea~Vvg~~d~~-~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~ 583 (628)
T TIGR02316 505 LGTREIEESVSSHPSVAEVAVVGVHDEL-KGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVA 583 (628)
T ss_pred eCHHHHHHHHHhCCCcceEEEEeeecCC-CCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcC
Confidence 9999999999999999999999987765 3454444444221 11 235789999999999999999999999
Q ss_pred CccCCCCccchhhhhhhcCCC
Q psy12852 988 AIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 988 ~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+||+|+||||+|+.|++....
T Consensus 584 ~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 584 ALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred CCCCCCchHHHHHHHHHHHcC
Confidence 999999999999999987643
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=605.03 Aligned_cols=487 Identities=17% Similarity=0.192 Sum_probs=379.9
Q ss_pred hcccCCcccchhhc---------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCC
Q psy12852 492 NARSTNDAAATTVK---------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~---------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~ 562 (1102)
+++++|+++|+++. -+|+||.++++++|+.|++.|+++|++|+++++|++++++++|||+++|++++|++|
T Consensus 76 ~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~ 155 (637)
T PRK00174 76 HLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFG 155 (637)
T ss_pred hhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCC
Confidence 47789999999852 239999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhccCceEEEEcCcch---------hHHHHHHhcCCCce-EEEecCCCC-------CCCChhHhhccCCC
Q psy12852 563 NLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDVK-LFLLDETKP-------DLPNLSDLMKTTPA 625 (1102)
Q Consensus 563 ~~p~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~ 625 (1102)
.++.+++.+++++++++++|+++... +.+.......+... ++.++.... ....+.++......
T Consensus 156 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (637)
T PRK00174 156 GFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVAGASD 235 (637)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHHHhhcCC
Confidence 99999999999999999999986532 22333333333332 333322110 11223333332211
Q ss_pred CCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh-hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 626 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
........+++++||+|||||||+||||+++|+++..+. ......+++.++|++++.+|++|..+..+.++.+|..|
T Consensus 236 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G 313 (637)
T PRK00174 236 --ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANG 313 (637)
T ss_pred --CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcC
Confidence 111234567899999999999999999999999987544 34455678899999999999999998778899999999
Q ss_pred ceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCc
Q psy12852 705 SSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHV 776 (1102)
Q Consensus 705 ~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~ 776 (1102)
+++++.+. .++..+++.|+++++|++.++|++++.|++.... ....+++.++++||++++++++.+.+.++.
T Consensus 314 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~ 393 (637)
T PRK00174 314 ATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGG 393 (637)
T ss_pred CEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCC
Confidence 99999763 5799999999999999999999999998876432 223567888899999999999999988863
Q ss_pred --chhhhccccccCCcccccCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceE
Q psy12852 777 --QTIIEFYGATEGNANLVNMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMII 849 (1102)
Q Consensus 777 --~~l~n~YG~TE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~ 849 (1102)
+.++|.||+||++..++... ...+++|.+. .++.+.++|++ |. +++.|+.||++
T Consensus 394 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~-------~g~~~~i~d~~-g~-----------~~~~g~~Gel~ 454 (637)
T PRK00174 394 ERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPL-------PGIQPAVVDEE-GN-----------PLEGGEGGNLV 454 (637)
T ss_pred CCCceEecccccccCCceEecCCCCCCcCCCcccCCC-------CCceEEEECCC-CC-----------CCCCCCcEEEE
Confidence 58999999999987654321 1233444432 23445556644 43 34677777766
Q ss_pred EEEeecCC-cccccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHH
Q psy12852 850 GEIKQSDP-SRHFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATIS 927 (1102)
Q Consensus 850 gei~~~G~-~~~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~ 927 (1102)
+.|| ..++.||++++. +.+.|+ ...++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.
T Consensus 455 ----v~g~~p~~~~gy~~~~~~~~~~~~----~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 526 (637)
T PRK00174 455 ----IKDPWPGMMRTIYGDHERFVKTYF----STFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 526 (637)
T ss_pred ----EcCCCCcccccccCCHHHHHHhhh----cCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH
Confidence 4574 257889999873 333333 334689999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEEEcCCCCCceeEEEEEcC-CCccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 928 KYLPYTEFTVYGVKVGDLDGRAGMIAIVDT-SNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 928 ~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~-~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
++|+|.+++|++++++. .++..+++++.. +...+ .++|+++++++||.|++|..|+++++||+|+|||++|++|+
T Consensus 527 ~~~~V~~~~Vvg~~~~~-~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~ 605 (637)
T PRK00174 527 AHPKVAEAAVVGRPDDI-KGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILR 605 (637)
T ss_pred hCCCcceEEEEeeEcCC-CCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHH
Confidence 99999999999976654 344444333322 22222 57899999999999999999999999999999999999999
Q ss_pred hcCCC
Q psy12852 1004 NEGFD 1008 (1102)
Q Consensus 1004 ~~~~~ 1008 (1102)
+....
T Consensus 606 ~~~~~ 610 (637)
T PRK00174 606 KIAEG 610 (637)
T ss_pred HHHcC
Confidence 87543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=597.33 Aligned_cols=485 Identities=16% Similarity=0.202 Sum_probs=380.8
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
+....|.+ .++++|+++|+.+.. +|+||.++++++|+.|.+. +|++|+|+++|++++++++|||+++|++
T Consensus 20 ~~~~~~~~---~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v 93 (539)
T PRK06334 20 TVLESFLK---LCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKI 93 (539)
T ss_pred cHHHHHHH---HHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence 34555555 488999999998654 3999999999999999873 8999999999999999999999999999
Q ss_pred EeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhc---CCCceEEEecCCCCCCCChhHhhcc-----CCCC--
Q psy12852 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRES---IPDVKLFLLDETKPDLPNLSDLMKT-----TPAS-- 626 (1102)
Q Consensus 557 ~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-- 626 (1102)
++|+++.++.+++.+++++++++++|++.+....+...... .+ ..++.++.... ...+.+.... .+..
T Consensus 94 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (539)
T PRK06334 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYP-FSLIYMEEVRK-ELSFWEKCRIGIYMSIPFEWL 171 (539)
T ss_pred eEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhcccccc-ccEEEEehhhh-hccHHHhhhhhhhhcCCchhh
Confidence 99999999999999999999999999987766555443221 11 12333332110 0011111000 0000
Q ss_pred -CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCc
Q psy12852 627 -EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705 (1102)
Q Consensus 627 -~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~ 705 (1102)
.........++++++|+|||||||.||||++||+++..+..+....++++++|++++++|++|..++...++.++..|+
T Consensus 172 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~ 251 (539)
T PRK06334 172 MRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGV 251 (539)
T ss_pred hhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCC
Confidence 0000124567899999999999999999999999999888877788899999999999999999997777899999999
Q ss_pred eEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhc
Q psy12852 706 SIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF 782 (1102)
Q Consensus 706 ~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 782 (1102)
++++.. .+++..+++.|+++++|++.++|++++.|+..... ....+++.+++||+++++++.+++.+.+++..++|.
T Consensus 252 ~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~ 331 (539)
T PRK06334 252 PVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQG 331 (539)
T ss_pred eEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEec
Confidence 999876 48999999999999999999999999998875432 234578888999999999999999999977789999
Q ss_pred cccccCCcccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCc
Q psy12852 783 YGATEGNANLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858 (1102)
Q Consensus 783 YG~TE~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~ 858 (1102)
||+||++.+++..... ...+|.+. ....+.++|++++.+ ++.|++||++ ++|+
T Consensus 332 YG~TE~~~~~~~~~~~~~~~~~~vG~p~-------~g~~v~i~d~~~~~~-----------~~~g~~Gel~----v~g~- 388 (539)
T PRK06334 332 YGTTECSPVITINTVNSPKHESCVGMPI-------RGMDVLIVSEETKVP-----------VSSGETGLVL----TRGT- 388 (539)
T ss_pred ccccccCceEEeccCCCCCCCCcCceec-------CCCEEEEEcCCCCcc-----------CCCCceEEEE----EecC-
Confidence 9999998766543221 12233332 345566677665543 4777777765 5688
Q ss_pred ccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce----
Q psy12852 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE---- 934 (1102)
Q Consensus 859 ~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~---- 934 (1102)
.++.||++++..+ .|.. .++++||+|||+|++|++|+++|+||.||+||++|++|+|.|||++|.+||+|.+
T Consensus 389 ~~~~GY~~~~~~~-~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~ 464 (539)
T PRK06334 389 SLFSGYLGEDFGQ-GFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHA 464 (539)
T ss_pred cccccccCCcccc-ccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCcccccc
Confidence 5889999987532 2322 2357899999999999999999999999999999999999999999999999998
Q ss_pred --eEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 935 --FTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 935 --a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++|++++ + ....+++++... .+.++++++|+++ ++.||+|+.++++++||+|+||||||++|++..
T Consensus 465 ~~~~v~~~~--~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 533 (539)
T PRK06334 465 GPLVVCGLP--G--EKVRLCLFTTFP--TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALA 533 (539)
T ss_pred CceEEEcCC--C--CceEEEEEEecc--CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHH
Confidence 6666633 2 223445554432 4678899999986 899999999999999999999999999998763
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=616.90 Aligned_cols=564 Identities=19% Similarity=0.294 Sum_probs=418.8
Q ss_pred HHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch---HHH
Q psy12852 434 HVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQ 510 (1102)
Q Consensus 434 ~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~e 510 (1102)
.-+..++. +|+.+++++.+++..++.++ ..|+.... +...++..+++. +++++|+++|+++.+. |+|
T Consensus 408 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~sl~~ll~~--~a~~~pd~~Al~~~~~~lTY~e 477 (994)
T PRK07868 408 RGAADAAV-----AANRSVRTLAVETARTLPRL-ARLGQIND--HTRISLGRIIAE--QARDAPKGEFLLFDGRVHTYEA 477 (994)
T ss_pred hhHHHHHH-----HhhhhhHHHHHHHHHhhhhH-HHhhhcCC--CCCccHHHHHHH--HHHHCCCCeEEEeCCceeeHHH
Confidence 33444555 89999999999999999987 66776654 333344444444 5899999999987654 999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhH
Q psy12852 511 IDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPE 590 (1102)
Q Consensus 511 L~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~ 590 (1102)
|+++++++|+.|++.|+++|++|+|+++|+++++++++||+++|++++|++|. +++.+++++++++++|++....+.
T Consensus 478 L~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~ 554 (994)
T PRK07868 478 VNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEA 554 (994)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 689999999999999998766554
Q ss_pred HHHHHhcCCCceEEEecCCCCC---------CCChhHhhccCCCCCC-CCCCCCCCCCeEEEEECCCCCCCCceEEeccH
Q psy12852 591 IEAIRESIPDVKLFLLDETKPD---------LPNLSDLMKTTPASEV-KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNF 660 (1102)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~ 660 (1102)
+... ..++++++..... ...+++........+. .......++|++||+|| ||||.|||+.++|.
T Consensus 555 ~~~~-----~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~ 628 (994)
T PRK07868 555 ARQL-----PGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNY 628 (994)
T ss_pred HHhc-----CceEEEecCCccccccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehH
Confidence 4321 1344554421100 0011110000000000 00012236899999999 57777777778887
Q ss_pred HHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHH
Q psy12852 661 KVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL 740 (1102)
Q Consensus 661 ~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l 740 (1102)
+...........++++++|++++.+|++|+.+....++.++..|+++++.+++++..+++.|+++++|+++++|++++.|
T Consensus 629 ~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L 708 (994)
T PRK07868 629 RWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREV 708 (994)
T ss_pred HHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHH
Confidence 76554455556778899999999999999999444455556666666677779999999999999999999999999999
Q ss_pred HhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC-CCCCcccccCCCCCCcCCCeeeE
Q psy12852 741 LASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD-NTEGAVGIIPTLLPTFLHPVAII 819 (1102)
Q Consensus 741 ~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 819 (1102)
+...........+++.+.|+.++++++++|.+.++.+.++|.||+||+++.++... ...+++|++.++. ..+.+.
T Consensus 709 ~~~~~~~~~~~~slr~~~g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~svG~p~pg~----~~v~i~ 784 (994)
T PRK07868 709 VDDPAFVLHGNHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVSGAKIGSKGRPLPGA----GRVELA 784 (994)
T ss_pred HhCcCCccCCCCceEEEecCCCCHHHHHHHHHHhCchheeeeeecccccccccccCCCCCcccCCccCCC----CceeEE
Confidence 87643222222233344466799999999999998779999999999886554322 2334555554321 134455
Q ss_pred EeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCcc
Q psy12852 820 QFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899 (1102)
Q Consensus 820 ~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~ 899 (1102)
.+|+++|+.+.+. .+..+.++.|++||+++ .|+ +|.+++.+..+ ..|.+++|||+|||+|++|+||+
T Consensus 785 ~~d~~~g~li~d~-~G~~~~~~~ge~Gel~~----~~~-----~~~~p~~t~~~---~~~~~~dgw~~TGDlg~~d~dG~ 851 (994)
T PRK07868 785 AYDPEHDLILEDD-RGFVRRAEVNEVGVLLA----RAR-----GPIDPTASVKR---GVFAPADTWISTEYLFRRDDDGD 851 (994)
T ss_pred EecCcCCceeecC-CceEEEcCCCCceEEEE----ecC-----CCCChhhhhHh---cccccCCEEEeccceEEEcCCCC
Confidence 5566667666554 44445678888888774 365 45554433222 22334689999999999999999
Q ss_pred EEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCC
Q psy12852 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYA 978 (1102)
Q Consensus 900 l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~ 978 (1102)
|+|+||+|||||++|.+|+|.|||++|.+||+|.+|+|++++++ .++..+++++ .++...+.++|+++|++ ||.||
T Consensus 852 l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~--~~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~ 928 (994)
T PRK07868 852 YWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVG--GRQLAVAAVTLRPGAAITAADLTEALAS-LPVGL 928 (994)
T ss_pred EEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCC--CCceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCc
Confidence 99999999999999999999999999999999999999996554 3444444444 33445788999999996 99999
Q ss_pred cceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcC--CceeecCHHHHHhhhcC
Q psy12852 979 RPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQG--SEFVRMTPNTYEKIMND 1038 (1102)
Q Consensus 979 ~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 1038 (1102)
+|+.|+++++||+|+||||+|++|++..... .+...++.+. +.+.+++.+.++++-..
T Consensus 929 vP~~i~~v~~lP~T~sGKi~r~~L~~~~lp~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (994)
T PRK07868 929 GPDIVHVVPEIPLSATYRPTVSALRAAGIPK--PGRQAWYFDPETNRYRRLTPAVRAELTGG 988 (994)
T ss_pred CCeEEEEeCCCCCCccccEehHHHHhcCCCC--CCCceEEEcCCCCeeEECCHHHHHHHhcc
Confidence 9999999999999999999999999887652 2334455543 67899999998876544
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=594.04 Aligned_cols=492 Identities=20% Similarity=0.221 Sum_probs=375.4
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +++++|+++|+.+++. |+||.++++++|++|.+.|+++|++|+|+++|+++++++++||+++|++++
T Consensus 8 ~~~~~~~~--~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~v 85 (563)
T PLN02860 8 HICQCLTR--LATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVA 85 (563)
T ss_pred HHHHHHHH--HHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEE
Confidence 34444444 5899999999987654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHH-hcCCCceEE-EecCCC-CCCCChhHhhccCC-----CCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIR-ESIPDVKLF-LLDETK-PDLPNLSDLMKTTP-----ASEVKP 630 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-----~~~~~~ 630 (1102)
||++.++.+++.++++++++++++++.........+. ...+....+ ..+... .....+.+...... ......
T Consensus 86 pl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (563)
T PLN02860 86 PLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTEL 165 (563)
T ss_pred eCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccccccc
Confidence 9999999999999999999999999876543333321 223333322 222211 00001111111000 000111
Q ss_pred CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe
Q psy12852 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR 710 (1102)
Q Consensus 631 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~ 710 (1102)
.....++++++|+|||||||.||||+++|+++..+.......++++++|+++..+|++|+.+ +..++.++..|+++++.
T Consensus 166 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g-~~~~~~~l~~G~~~v~~ 244 (563)
T PLN02860 166 DYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG-LSSALAMLMVGACHVLL 244 (563)
T ss_pred cCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhcc-HHHHHHHHHcCceEEec
Confidence 12346789999999999999999999999999887777777888999999999999999998 67789999999999999
Q ss_pred CCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 711 TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 711 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
+++++..+++.|+++++|++.++|+++..|+..... ....+++.+++||+++++++.++|.+.|++..++|.||+|
T Consensus 245 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~T 324 (563)
T PLN02860 245 PKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMT 324 (563)
T ss_pred CCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCcc
Confidence 999999999999999999999999999998765321 2345778889999999999999999999877999999999
Q ss_pred cCCcccccCCCCCCcc--------------------cccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCc
Q psy12852 787 EGNANLVNMDNTEGAV--------------------GIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPG 846 (1102)
Q Consensus 787 E~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~G 846 (1102)
|++..++......... ....+.+.+. .++.+.+++++ .|++|
T Consensus 325 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~-~~~~v~i~~~~-----------------~g~~G 386 (563)
T PLN02860 325 EACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPA-PHVELKIGLDE-----------------SSRVG 386 (563)
T ss_pred ccCcccccccccccccccchhhhhhhcccccccccccCCcccCCcc-CCcEEEEecCC-----------------CCcee
Confidence 9986554322111000 0000001111 11222222211 24444
Q ss_pred ceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHH
Q psy12852 847 MIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925 (1102)
Q Consensus 847 el~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~ 925 (1102)
||++.|+ .++.||++++ .+.+.|. .++||+|||+|++++||+++|+||+||+||++|++|+|.|||++
T Consensus 387 ----el~v~g~-~~~~GY~~~~~~t~~~~~------~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~ 455 (563)
T PLN02860 387 ----RILTRGP-HVMLGYWGQNSETASVLS------NDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAV 455 (563)
T ss_pred ----EEEEecC-cccccccCCccccchhcc------CCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHH
Confidence 4567799 4889999887 4554442 26899999999999999999999999999999999999999999
Q ss_pred HHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC---------------CccCHHHHHHHHHc-cCCCCCcceEEEEe-cC
Q psy12852 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS---------------NQVDLKLLVQGLDA-NLPAYARPLFVRIM-KA 988 (1102)
Q Consensus 926 l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~---------------~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l-~~ 988 (1102)
+.+||+|.+++|++++++. .++..+++++..+ ...+.++|++++++ .||+||+|+.|+++ ++
T Consensus 456 l~~~p~V~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~ 534 (563)
T PLN02860 456 LSQHPGVASVVVVGVPDSR-LTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKP 534 (563)
T ss_pred HHhCCCcceeEEEEEecCc-CCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecC
Confidence 9999999999999976654 3444444443221 13567889999997 59999999998765 77
Q ss_pred ccCCCCccchhhhhhhcC
Q psy12852 989 IEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 989 lP~t~~GKidr~~L~~~~ 1006 (1102)
||+|++|||+|++|+++.
T Consensus 535 lP~t~~GKi~r~~L~~~~ 552 (563)
T PLN02860 535 FPLTTTGKIRRDEVRREV 552 (563)
T ss_pred CCCCcccchhHHHHHHHH
Confidence 999999999999999875
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=594.07 Aligned_cols=493 Identities=18% Similarity=0.211 Sum_probs=378.3
Q ss_pred HHHHHHHHhhcc-cCCcccchhhcc---------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHH
Q psy12852 483 YSRFKQEASNAR-STNDAAATTVKN---------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 552 (1102)
Q Consensus 483 ~~~~~~~~~~a~-~~P~~~Av~~~~---------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~ 552 (1102)
...+.+. +. .+|+++|+++.. +|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||++
T Consensus 91 ~~~l~~~---~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~ 167 (666)
T PLN02654 91 YNCLDRN---VEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR 167 (666)
T ss_pred HHHHHHh---hccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3444443 44 589999998631 3999999999999999999999999999999999999999999999
Q ss_pred cCceEeecCCCCCchhhhhhhhccCceEEEEcCcchh---------HHHHHHhcC-----CCceEEEecCCC------C-
Q psy12852 553 LGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYP---------EIEAIRESI-----PDVKLFLLDETK------P- 611 (1102)
Q Consensus 553 aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~------~- 611 (1102)
+|++++|+++.++.+++.+++++++++++|+++.... .+....... ....++..+... .
T Consensus 168 ~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (666)
T PLN02654 168 IGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTK 247 (666)
T ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccc
Confidence 9999999999999999999999999999999876432 111111110 001122212100 0
Q ss_pred ----CCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHH-hhhhhhhccCCCCCcEEEEecC
Q psy12852 612 ----DLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGDVIYNCLP 686 (1102)
Q Consensus 612 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p 686 (1102)
....++++....+. ........++|+++|+|||||||+||||+++|++++. ........++++++|++++.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 325 (666)
T PLN02654 248 WQEGRDVWWQDVVPNYPT--KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTAD 325 (666)
T ss_pred cccCCcccHHHHhhcCCC--CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCC
Confidence 00112222221111 1111235779999999999999999999999999864 3455666789999999999999
Q ss_pred chhhhhHHHHHHhHhhcCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeee
Q psy12852 687 MYHSAGGLIGTIPALILGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMI 758 (1102)
Q Consensus 687 l~~~~~~~~~i~~~l~~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~ 758 (1102)
++|..+..+.++.+|+.|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ....++++++++
T Consensus 326 ~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~ 405 (666)
T PLN02654 326 CGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSV 405 (666)
T ss_pred chhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEe
Confidence 99999877888999999999999874 5899999999999999999999999999876432 123477888889
Q ss_pred ccCCCHHHHHHHHHHhCc--chhhhccccccCCcccccC-----CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCC
Q psy12852 759 GVGMRGDIWAKFVKRFHV--QTIIEFYGATEGNANLVNM-----DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRD 831 (1102)
Q Consensus 759 Ge~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~ 831 (1102)
||++++++++++.+.++. +.+.+.||+||++...+.. +..++++|.+. ..+.+.++|++ |.++
T Consensus 406 Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~-------~g~~v~i~d~~-g~~~-- 475 (666)
T PLN02654 406 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-------FGVQPVIVDEK-GKEI-- 475 (666)
T ss_pred cCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCC-------CCceEEEECCC-CCCC--
Confidence 999999999999999873 4799999999998655422 12334455443 23445556654 4433
Q ss_pred CCCcccccccCCCCcceEEEEeecCC-cccccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCe
Q psy12852 832 PKTGLCIRCKYNQPGMIIGEIKQSDP-SRHFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDT 909 (1102)
Q Consensus 832 ~~~~~~~~~~~g~~Gel~gei~~~G~-~~~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ 909 (1102)
+.|+.||++ +.|| ..++.||++++. +.+.|+. ..++||+|||+|++|+||+++|+||+||+
T Consensus 476 ---------~~~~~Gel~----v~~~~p~~~~gy~~~~~~~~~~~~~----~~~g~~~TGD~~~~d~dG~l~i~GR~dd~ 538 (666)
T PLN02654 476 ---------EGECSGYLC----VKKSWPGAFRTLYGDHERYETTYFK----PFAGYYFSGDGCSRDKDGYYWLTGRVDDV 538 (666)
T ss_pred ---------CCCCceEEE----EcCCCchhhhhhcCChHHHHHhhhh----cCCCEEEeCceEEECCCCcEEEeeeccCe
Confidence 445566655 5563 258889999874 4444432 23679999999999999999999999999
Q ss_pred EEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEc-CCCccC---HHHHHHHHHccCCCCCcceEEEE
Q psy12852 910 YRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD-TSNQVD---LKLLVQGLDANLPAYARPLFVRI 985 (1102)
Q Consensus 910 Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~-~~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~ 985 (1102)
||++|+||+|.|||++|.+||+|.+++|++++++. .++...++++. ++...+ .++|+++++++|+.|++|+.|++
T Consensus 539 I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~-~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~ 617 (666)
T PLN02654 539 INVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEV-KGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHW 617 (666)
T ss_pred EEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCC-CCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEE
Confidence 99999999999999999999999999999987765 34444444442 222233 24788999999999999999999
Q ss_pred ecCccCCCCccchhhhhhhcCCC
Q psy12852 986 MKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 986 l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++||+|+||||+|+.|++....
T Consensus 618 v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 618 APGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred CCCCCCCCCcCchHHHHHHHHcC
Confidence 99999999999999999987643
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-61 Score=592.75 Aligned_cols=494 Identities=19% Similarity=0.251 Sum_probs=383.6
Q ss_pred hHHHHHHHHhhcccCCcccchhhc---------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHH
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVK---------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 552 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~---------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~ 552 (1102)
+...+.+ +++++|+++|+++. -+|+||.++++++|+.|++.|+++|++|+++++|++++++++|||++
T Consensus 59 ~~~~l~~---~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 135 (625)
T TIGR02188 59 SYNCVDR---HLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACAR 135 (625)
T ss_pred HHHHHHH---hhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 3444444 47789999999752 12999999999999999999999999999999999999999999999
Q ss_pred cCceEeecCCCCCchhhhhhhhccCceEEEEcCcch---------hHHHHHHhcCC-Cc-eEEEecCCCC-------CCC
Q psy12852 553 LGVISALINTNLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIP-DV-KLFLLDETKP-------DLP 614 (1102)
Q Consensus 553 aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~-~~~~~~~~~~-------~~~ 614 (1102)
+|++++|+++.++.+++.+++++++++++|+++... ..+.......+ .+ .+++++.... ...
T Consensus 136 ~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (625)
T TIGR02188 136 IGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDV 215 (625)
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccc
Confidence 999999999999999999999999999999987532 23333333333 22 2333332110 112
Q ss_pred ChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh-hhhhhccCCCCCcEEEEecCchhhhhH
Q psy12852 615 NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGG 693 (1102)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~ 693 (1102)
.+.++...... ........++++++|+|||||||+||||+++|+++.... ......++++++|++++..|++|..+.
T Consensus 216 ~~~~~~~~~~~--~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 293 (625)
T TIGR02188 216 WWHDLMAKASA--YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGH 293 (625)
T ss_pred cHHHHHhhcCC--CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhcc
Confidence 23333332211 111234677899999999999999999999999986543 344556789999999999999999887
Q ss_pred HHHHHhHhhcCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHH
Q psy12852 694 LIGTIPALILGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGD 765 (1102)
Q Consensus 694 ~~~i~~~l~~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~ 765 (1102)
.+.++.+|..|+++++.+. .++..+++.|+++++|++.++|++++.|.+.... ....+++.++++||+++++
T Consensus 294 ~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~ 373 (625)
T TIGR02188 294 SYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPE 373 (625)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHH
Confidence 7889999999999999763 4799999999999999999999999999876432 2235678888999999999
Q ss_pred HHHHHHHHhCc--chhhhccccccCCcccccC-----CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccc
Q psy12852 766 IWAKFVKRFHV--QTIIEFYGATEGNANLVNM-----DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838 (1102)
Q Consensus 766 ~~~~~~~~~~~--~~l~n~YG~TE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~ 838 (1102)
+++.+.+.++. +.++|.||+||++..++.. ...++++|.+. ..+.+.++|+ +|.++
T Consensus 374 ~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~-------~g~~~~i~d~-~g~~~--------- 436 (625)
T TIGR02188 374 AWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPF-------FGIEPAVVDE-EGNPV--------- 436 (625)
T ss_pred HHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCc-------CCceEEEECC-CCCCC---------
Confidence 99999998863 5899999999998765432 12334444442 2344555563 35433
Q ss_pred ccc-CCCCcceEEEEeecCC-cccccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCce
Q psy12852 839 RCK-YNQPGMIIGEIKQSDP-SRHFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGE 915 (1102)
Q Consensus 839 ~~~-~g~~Gel~gei~~~G~-~~~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ 915 (1102)
+ .|+.||++ +.|| ..++.||++++. +.+.++. ..++||+|||+|++|+||+++|+||+||+||++|+
T Consensus 437 --~~~g~~GeL~----v~~p~p~~~~gy~~~~~~~~~~~~~----~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ 506 (625)
T TIGR02188 437 --EGPGEGGYLV----IKQPWPGMLRTIYGDHERFVDTYFS----PFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGH 506 (625)
T ss_pred --CCCCCeEEEE----EccCCCcccccccCChHHHHHHHhc----cCCCEEECCceEEEcCCCcEEEEecccCEEEeCCE
Confidence 4 67777765 5574 258899999874 4444432 23679999999999999999999999999999999
Q ss_pred eechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcC-CCccC---HHHHHHHHHccCCCCCcceEEEEecCccC
Q psy12852 916 NVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT-SNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEM 991 (1102)
Q Consensus 916 ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~-~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~ 991 (1102)
||+|.|||++|.+||+|.+++|++++++. .++..+++++.. +...+ .++|+++++++|+.|++|+.|+++++||+
T Consensus 507 ri~p~eIE~~l~~~p~V~e~~vvg~~~~~-~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~ 585 (625)
T TIGR02188 507 RLGTAEIESALVSHPAVAEAAVVGIPDDI-KGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPK 585 (625)
T ss_pred EECHHHHHHHHHhCCCcceEEEEeeEcCC-CCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCC
Confidence 99999999999999999999999977664 344444444422 22222 47899999999999999999999999999
Q ss_pred CCCccchhhhhhhcCCC
Q psy12852 992 TGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 992 t~~GKidr~~L~~~~~~ 1008 (1102)
|+|||++|+.|++....
T Consensus 586 t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 586 TRSGKIMRRLLRKIAAG 602 (625)
T ss_pred CCCccchHHHHHHHHcC
Confidence 99999999999987544
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=586.02 Aligned_cols=482 Identities=18% Similarity=0.175 Sum_probs=367.3
Q ss_pred CCcccchhhc---------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 496 TNDAAATTVK---------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 496 ~P~~~Av~~~---------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++. -+|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.
T Consensus 74 ~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~ 153 (647)
T PTZ00237 74 KRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV 153 (647)
T ss_pred CCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCH
Confidence 7999999763 1299999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCc---------chhHHHHHHhcCC--CceEEEecCCC----------------CCCCChhHh
Q psy12852 567 QPLVHSISTVKSKAIIVSAL---------YYPEIEAIRESIP--DVKLFLLDETK----------------PDLPNLSDL 619 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~---------~~~~~~~~~~~~~--~~~~~~~~~~~----------------~~~~~~~~~ 619 (1102)
+++.+++++++++++|+++. ..+.+........ ..+++.+.... +....+.++
T Consensus 154 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (647)
T PTZ00237 154 KSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDE 233 (647)
T ss_pred HHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHH
Confidence 99999999999999999753 2222333222111 12333321100 111233333
Q ss_pred hccCC---CCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHH-HHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH
Q psy12852 620 MKTTP---ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK-VLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI 695 (1102)
Q Consensus 620 ~~~~~---~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~ 695 (1102)
+.... ...........++++++|+|||||||+||||+++|++ +.+........+....+|++++.+|++|..+ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~-~~ 312 (647)
T PTZ00237 234 IKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSF-HG 312 (647)
T ss_pred HhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEee-HH
Confidence 32110 0111112345778999999999999999999999998 5544444455567788999999999999875 56
Q ss_pred HHHhHhhcCceEEEeCC--CC----HhHHHHHHhhcccccccccHHHHHHHHhccCC-------ccccccceeeeeccCC
Q psy12852 696 GTIPALILGSSIAIRTK--FS----ASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-------EADYSHQVVKMIGVGM 762 (1102)
Q Consensus 696 ~i~~~l~~G~~lv~~~~--~~----~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------~~~~~l~~~~~~Ge~l 762 (1102)
.++.+|+.|+++++.+. +. +..+++.|+++++|++.++|++++.|++.... ....+++.++++||++
T Consensus 313 ~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l 392 (647)
T PTZ00237 313 FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVI 392 (647)
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccC
Confidence 78999999999999764 22 68899999999999999999999999875321 1235778888999999
Q ss_pred CHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccc
Q psy12852 763 RGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838 (1102)
Q Consensus 763 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~ 838 (1102)
++++.+++.+.++. .++|.||+||+++.++.... ..+++|.+. ..+.+.++|+ +|.+
T Consensus 393 ~~~~~~~~~~~~g~-~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~-------~g~~~~i~d~-~g~~---------- 453 (647)
T PTZ00237 393 EESIPEYIENKLKI-KSSRGYGQTEIGITYLYCYGHINIPYNATGVPS-------IFIKPSILSE-DGKE---------- 453 (647)
T ss_pred CHHHHHHHHHhcCC-CEEeeechHHhChhhhccCCCCCCCCCCCccCc-------CCceEEEECC-CCCC----------
Confidence 99999999998874 89999999999865442211 113344432 2334555665 3543
Q ss_pred cccCCCCcceEEEEeecCC--cccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCcee
Q psy12852 839 RCKYNQPGMIIGEIKQSDP--SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916 (1102)
Q Consensus 839 ~~~~g~~Gel~gei~~~G~--~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~r 916 (1102)
++.|+.||+++ +|| ..++.||++++......+. ..++||+|||+|++|+||+++|+||+||+||++|+|
T Consensus 454 -~~~ge~GEl~v----~~p~~p~~~~gy~~~~~~~~~~f~----~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~r 524 (647)
T PTZ00237 454 -LNVNEIGEVAF----KLPMPPSFATTFYKNDEKFKQLFS----KFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNK 524 (647)
T ss_pred -CCCCCceEEEE----eccCCchhhCceeCCHHHHHHHHh----CCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEE
Confidence 46788888774 354 2578899998743333322 225799999999999999999999999999999999
Q ss_pred echHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC----CccCH----HHHHHHHHccCCCCCcceEEEEecC
Q psy12852 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS----NQVDL----KLLVQGLDANLPAYARPLFVRIMKA 988 (1102)
Q Consensus 917 i~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~----~~~~~----~~l~~~l~~~Lp~~~~P~~i~~l~~ 988 (1102)
|+|.|||++|.+||+|.+++|++++++. .++..+++++... ...+. ++|+++++++|++|++|+.|+++++
T Consensus 525 I~p~eIE~~l~~~p~V~eaavvg~~~~~-~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~ 603 (647)
T PTZ00237 525 VQLNTIETSILKHPLVLECCSIGIYDPD-CYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQ 603 (647)
T ss_pred eCHHHHHHHHHhCCCceeeEEEeeEcCC-CCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCC
Confidence 9999999999999999999999987765 3444444444221 12233 5668888999999999999999999
Q ss_pred ccCCCCccchhhhhhhcCC
Q psy12852 989 IEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 989 lP~t~~GKidr~~L~~~~~ 1007 (1102)
||+|+||||+|+.|++...
T Consensus 604 lP~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 604 LPKTKTGKIPRQIISKFLN 622 (647)
T ss_pred CCCCCCccEeHHHHHHHHc
Confidence 9999999999999998853
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=595.04 Aligned_cols=488 Identities=19% Similarity=0.212 Sum_probs=374.3
Q ss_pred hHHHHHHHHhhcccCCcccchh-----hc-------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 482 TYSRFKQEASNARSTNDAAATT-----VK-------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~-----~~-------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
++..+++. +|+++|+++|+. ++ -+|+||.++++++|++|++.|+++|++|+|+++|+++++++++|
T Consensus 45 tl~~~l~~--~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 122 (651)
T PLN02736 45 TLHDNFVY--AVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHA 122 (651)
T ss_pred CHHHHHHH--HHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34454554 588999999983 11 24999999999999999999999999999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEE-ecCCC-----------CCCCChh
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFL-LDETK-----------PDLPNLS 617 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~ 617 (1102)
|+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.++.+. .+... .....++
T Consensus 123 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 202 (651)
T PLN02736 123 CSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYS 202 (651)
T ss_pred HHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHH
Confidence 99999999999999999999999999999999999877766666555555544433 32211 0122344
Q ss_pred HhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHH
Q psy12852 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697 (1102)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i 697 (1102)
++........ .......++|+++|+|||||||.||||++||+++..++.+....+++.++|++++++|++|..+ ...+
T Consensus 203 ~~~~~~~~~~-~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~-~~~~ 280 (651)
T PLN02736 203 KLLAQGRSSP-QPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYE-RVNQ 280 (651)
T ss_pred HHHHhcccCC-CCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHH-HHHH
Confidence 4443222111 1113457899999999999999999999999999999888888889999999999999999998 5578
Q ss_pred HhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccC------------------------------Cc
Q psy12852 698 IPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE------------------------------SE 747 (1102)
Q Consensus 698 ~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------~~ 747 (1102)
+.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+... ..
T Consensus 281 ~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (651)
T PLN02736 281 IVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPS 359 (651)
T ss_pred HHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 889999999988764 78899999999999999999999987754310 00
Q ss_pred -c------------c-cccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccccCCCCC
Q psy12852 748 -A------------D-YSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGIIPTLLP 810 (1102)
Q Consensus 748 -~------------~-~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~ 810 (1102)
. . .+++.+++||+++++++.+.+.+.++. .+++.||+||+++.++.... ..+++|.+.
T Consensus 360 ~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~-~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~---- 434 (651)
T PLN02736 360 PMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGG-RVLEGYGMTETSCVISGMDEGDNLSGHVGSPN---- 434 (651)
T ss_pred chHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCC-CeEEEechHHhchheeccCCCCCCCCccCCcc----
Confidence 0 0 257788889999999999999988875 89999999999876553322 233444442
Q ss_pred CcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEec
Q psy12852 811 TFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSG 889 (1102)
Q Consensus 811 ~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTG 889 (1102)
..+.+.++|.+.+.... ...++..| ||+++|| .++.||++++ .|.+.|. .+|||+||
T Consensus 435 ---pg~~v~i~d~~~~~~~~--------~~~~~~~G----El~vrgp-~v~~GY~~~~~~t~~~~~------~dgw~~TG 492 (651)
T PLN02736 435 ---PACEVKLVDVPEMNYTS--------EDQPYPRG----EICVRGP-IIFKGYYKDEVQTREVID------EDGWLHTG 492 (651)
T ss_pred ---CceEEEEEEccccCccc--------CCCCCCCc----eEEecCC-ccccccccCHHHHHhhhc------cCCCeecc
Confidence 33445555533332211 11222344 4567799 5899999987 5555552 26899999
Q ss_pred ceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC---------
Q psy12852 890 DMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN--------- 959 (1102)
Q Consensus 890 Dl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~--------- 959 (1102)
|+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++ +. .++. +++++++..
T Consensus 493 Dlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g--~~--~~~~-~~A~vv~~~~~~~~~~~~ 567 (651)
T PLN02736 493 DIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG--DS--LNSS-LVAVVVVDPEVLKAWAAS 567 (651)
T ss_pred ceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEe--cC--CCce-eEEEEEeCHHHHHHHHHH
Confidence 99999999999999999999998 799999999999999999999999997 21 2333 444443221
Q ss_pred -ccCHHHHHHHHH------------------ccCCCCCcceEEEEecCcc------CCCCccchhhhhhhcC
Q psy12852 960 -QVDLKLLVQGLD------------------ANLPAYARPLFVRIMKAIE------MTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 960 -~~~~~~l~~~l~------------------~~Lp~~~~P~~i~~l~~lP------~t~~GKidr~~L~~~~ 1006 (1102)
..+..++.++++ +.|+.|++|++|+++++.| +|++|||+|+.+++.+
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~ 639 (651)
T PLN02736 568 EGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYF 639 (651)
T ss_pred cCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHH
Confidence 122223333332 3699999999999999986 7999999999998754
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=576.27 Aligned_cols=479 Identities=21% Similarity=0.242 Sum_probs=383.4
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
..+.|.+ +++++|+++|+.+.+. |+||+++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 45 ~~~~l~~---~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 45 PTSGFAI---AAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred HHHHHHH---HHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 3344444 5899999999997654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC-ceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
|+++.++.+++.+++++++++++|++......+.......+. ..++.+++.. ....++.+........ ....++
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~ 196 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED-HDLTVEVLIAAHAGQR----PEPTGR 196 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc-ccccHHHHhhccCcCC----CCCCCC
Confidence 999999999999999999999999998776655544333332 2223332211 1122333332211111 123467
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhH
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~ 717 (1102)
+.++++|||||||+||||+++|+++..........+.+..+++++...|++|..+ +..++.++..|+++++.+.+++..
T Consensus 197 ~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g-~~~~~~~l~~g~~~~~~~~~~~~~ 275 (537)
T PRK13382 197 KGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWG-FSQLVLAASLACTIVTRRRFDPEA 275 (537)
T ss_pred CCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhH-HHHHHHHHhcCcEEEECCCcCHHH
Confidence 8999999999999999999999999888887777888899999999999999998 678899999999999988899999
Q ss_pred HHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccc
Q psy12852 718 YFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793 (1102)
Q Consensus 718 l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 793 (1102)
+++.|+++++|++.++|++++.|+..... ....+++.+++|||++++++++.|.+.++. .++|.||+||++.+++
T Consensus 276 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~ 354 (537)
T PRK13382 276 TLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGD-VIYNNYNATEAGMIAT 354 (537)
T ss_pred HHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCC-cEEecccccccCccee
Confidence 99999999999999999999998775422 112367888999999999999999999986 7999999999987665
Q ss_pred cCC----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchH
Q psy12852 794 NMD----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE 869 (1102)
Q Consensus 794 ~~~----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~ 869 (1102)
... ...+++|.+. .+..+.++|++ +. +++.|+.||++ +.|+ .++.||+ +.
T Consensus 355 ~~~~~~~~~~~~vG~p~-------~~~~~~i~d~~-~~-----------~~~~g~~GEl~----v~g~-~~~~gY~--~~ 408 (537)
T PRK13382 355 ATPADLRAAPDTAGRPA-------EGTEIRILDQD-FR-----------EVPTGEVGTIF----VRND-TQFDGYT--SG 408 (537)
T ss_pred cChhHhccCCCCccccC-------cCcEEEEECCC-CC-----------CCCCCCeeEEE----EEcC-CcccCcc--cc
Confidence 332 1223444432 33445555654 33 34778877766 5588 5888998 32
Q ss_pred HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCce
Q psy12852 870 SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRA 949 (1102)
Q Consensus 870 t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~ 949 (1102)
.+..|. ++||+|||++++++||+++|.||+||+||++|+||+|.|||.+|.++|+|.+++|++++++. .++.
T Consensus 409 ~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~-~g~~ 480 (537)
T PRK13382 409 STKDFH-------DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQ-YGQR 480 (537)
T ss_pred chhhcc-------CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccc-cCCE
Confidence 333332 57999999999999999999999999999999999999999999999999999999866543 3444
Q ss_pred eEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 950 GMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 950 ~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
..++++ ..+...+.++++++++++||.|++|..+++++++|+|++||++|++|++
T Consensus 481 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 481 LAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 444444 2333467889999999999999999999999999999999999999975
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-60 Score=575.50 Aligned_cols=489 Identities=21% Similarity=0.261 Sum_probs=392.6
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
..+.+++. ++++|+++|+.+.. +|+||.++++++|++|++.|+++|++|+++++|+++++++++||+++|++
T Consensus 25 ~~~~l~~~---~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 25 LHDYCFER---LSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred HHHHHHHH---HHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 34455554 77899999998642 29999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCC
Q psy12852 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQT 636 (1102)
Q Consensus 557 ~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1102)
++|++|.++.+++..++++++++++|++....+.+...... +...++.++........+.+........ .+.....+
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 178 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGVTVVTIDDPPEGCLHFSELTQADENE--LPEVEISP 178 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCceEEEeCCCCCCceeHHHHhcCCCCC--CCCCCCCc
Confidence 99999999999999999999999999998877766554432 2345666654333333344443322111 11234568
Q ss_pred CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh----hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC
Q psy12852 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK----HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK 712 (1102)
Q Consensus 637 ~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~ 712 (1102)
+++++++|||||||.||||+++|+++...+.... ..+++.++|+++..+|++|..++...++.++..|+++++.+.
T Consensus 179 ~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~ 258 (537)
T PLN02246 179 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPK 258 (537)
T ss_pred cCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 8999999999999999999999999988765443 257789999999999999999866778889999999999999
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
+++..+++.|+++++|++.++|+++..|.+..... ....++.++.||+++++++.+.+.+.+++..+++.||+||++.
T Consensus 259 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 338 (537)
T PLN02246 259 FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGP 338 (537)
T ss_pred CCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCc
Confidence 99999999999999999999999999987754322 2346788889999999999999999998778999999999987
Q ss_pred ccccCC--------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccc
Q psy12852 791 NLVNMD--------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862 (1102)
Q Consensus 791 ~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~ 862 (1102)
+++... ..++++|.+. ....+.++|++++.+ ++.|+.||++ +.|+ .++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~~~~~-----------~~~g~~Gel~----v~g~-~~~~ 395 (537)
T PLN02246 339 VLAMCLAFAKEPFPVKSGSCGTVV-------RNAELKIVDPETGAS-----------LPRNQPGEIC----IRGP-QIMK 395 (537)
T ss_pred ccccccccCCCCccccCCcccccc-------CCcEEEEecCCCCCc-----------CCCCCceEEE----EECC-chhc
Confidence 654321 1223334332 344556666554543 4778888766 5588 5889
Q ss_pred ccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEE
Q psy12852 863 GYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941 (1102)
Q Consensus 863 gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~ 941 (1102)
||++++ .+.++|. .++||+|||+|+++++|.++++||+||+||++|+||+|.|||++|.++|+|.+++|++++
T Consensus 396 GY~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~ 469 (537)
T PLN02246 396 GYLNDPEATANTID------KDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMK 469 (537)
T ss_pred cccCCchhhhhccc------CCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEccc
Confidence 999887 4444432 368999999999999999999999999999999999999999999999999999999854
Q ss_pred cCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 942 VGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 942 ~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+.. .++..+++++ ..+...+.++|+++|+++||.|++|..++++++||+|++||++|++|+++.
T Consensus 470 ~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~ 534 (537)
T PLN02246 470 DEV-AGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKL 534 (537)
T ss_pred Ccc-CCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHH
Confidence 443 2333333333 223346788999999999999999999999999999999999999998764
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=585.32 Aligned_cols=490 Identities=17% Similarity=0.142 Sum_probs=371.4
Q ss_pred cccCCcccchhhcc-----------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 493 ARSTNDAAATTVKN-----------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 493 a~~~P~~~Av~~~~-----------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
+.++|+++|+++.+ +|+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++++|++
T Consensus 185 ~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~ 264 (728)
T PLN03052 185 PSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIA 264 (728)
T ss_pred hccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeC
Confidence 34689999998632 3999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhccCceEEEEcCcch------hHHHHHHhcCCCceEEEecCCC--------CCCCChhHhhccCCCC-
Q psy12852 562 TNLKKQPLVHSISTVKSKAIIVSALYY------PEIEAIRESIPDVKLFLLDETK--------PDLPNLSDLMKTTPAS- 626 (1102)
Q Consensus 562 ~~~p~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~- 626 (1102)
|.++.+++.+++++++++++|+++... +....+...... +++++.... .....+++++......
T Consensus 265 p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
T PLN03052 265 DSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAP-KAIVLPADGKSVRVKLREGDMSWDDFLARANGLR 343 (728)
T ss_pred CCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCC-cEEEEeCCCCccccccccCCccHHHHHhcccccc
Confidence 999999999999999999999987532 112222211111 222222110 1123344443322110
Q ss_pred --CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 627 --EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 627 --~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
.........+++++||+|||||||+||||+++|++++..+......++++++|++++.++++|+++ .+.++.+|+.|
T Consensus 344 ~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g-~~~v~~~L~~G 422 (728)
T PLN03052 344 RPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMG-PWLVYASLLNG 422 (728)
T ss_pred ccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhH-HHHHHHHHHhC
Confidence 011111235689999999999999999999999998877766666688999999999999999998 67889999999
Q ss_pred ceEEEeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhh
Q psy12852 705 SSIAIRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIE 781 (1102)
Q Consensus 705 ~~lv~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n 781 (1102)
+++++.+. .++..+++.++++++|++.++|++++.|.+.... ....++|.++++||+++++....+.+.++...++|
T Consensus 423 at~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~ 502 (728)
T PLN03052 423 ATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIE 502 (728)
T ss_pred CEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEe
Confidence 99999875 5667899999999999999999999998776432 22347788888999999999888777766457899
Q ss_pred ccccccCCccccc-CC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCC--CcceEEEEeec
Q psy12852 782 FYGATEGNANLVN-MD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQ--PGMIIGEIKQS 855 (1102)
Q Consensus 782 ~YG~TE~~~~~~~-~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~--~Gel~gei~~~ 855 (1102)
.||+||++..... .. ...+++|.+. ..+.+.++|++ |+++ +.|+ .|||+. .
T Consensus 503 ~yG~TE~~~~~~~~~~~~~~~~g~~g~p~-------~g~~v~v~d~~-g~~v-----------~~g~~~~GEL~v----~ 559 (728)
T PLN03052 503 YCGGTELGGGFVTGSLLQPQAFAAFSTPA-------MGCKLFILDDS-GNPY-----------PDDAPCTGELAL----F 559 (728)
T ss_pred eccChhhCcccccCCCCCCCCCCccccCC-------CCceEEEECCC-CCCC-----------CCCCCceEEEEE----e
Confidence 9999999764432 11 1223333332 34556667754 5443 5564 467663 3
Q ss_pred CCc-ccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHH-hcCCcc
Q psy12852 856 DPS-RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATIS-KYLPYT 933 (1102)
Q Consensus 856 G~~-~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~-~~~~V~ 933 (1102)
++. ....||+|++.+..-|...|+.++++||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|. .||+|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~ 639 (728)
T PLN03052 560 PLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVL 639 (728)
T ss_pred CCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcc
Confidence 331 234578887654444544555557789999999999999999999999999999999999999999995 899999
Q ss_pred eeEEEEEEcCCCCCceeEEEEEc---CCCccCHHHHHH----HHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 934 EFTVYGVKVGDLDGRAGMIAIVD---TSNQVDLKLLVQ----GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 934 ~a~vv~~~~~~~~~~~~l~~~v~---~~~~~~~~~l~~----~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+++|++++++...++..+++++. .+...+.++|++ +|+++|+++++|+.|+++++||+|+||||+|+.|++..
T Consensus 640 eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~ 719 (728)
T PLN03052 640 ETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719 (728)
T ss_pred eEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHH
Confidence 99999977654222434444442 233445556655 46788999999999999999999999999999999865
Q ss_pred C
Q psy12852 1007 F 1007 (1102)
Q Consensus 1007 ~ 1007 (1102)
.
T Consensus 720 ~ 720 (728)
T PLN03052 720 A 720 (728)
T ss_pred H
Confidence 3
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-60 Score=574.51 Aligned_cols=496 Identities=20% Similarity=0.269 Sum_probs=397.3
Q ss_pred cchhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHH
Q psy12852 477 LEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAK 552 (1102)
Q Consensus 477 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~ 552 (1102)
.|..+..+.|.+ ++.++|+++|+.+.+. |+||.+++.++|..|.+. |+++|++|+|+++++++++++++||++
T Consensus 7 ~~~~tl~~~l~~---~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 83 (546)
T PRK08314 7 LPETSLFHNLEV---SARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR 83 (546)
T ss_pred CCCCCHHHHHHH---HHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 444455555655 4889999999988764 999999999999999999 999999999999999999999999999
Q ss_pred cCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEec--CC---------------------
Q psy12852 553 LGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLD--ET--------------------- 609 (1102)
Q Consensus 553 aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------------- 609 (1102)
+|++++|++|..+.+++.++++++++++++++......+...........++..+ +.
T Consensus 84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (546)
T PRK08314 84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQA 163 (546)
T ss_pred cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccc
Confidence 9999999999999999999999999999999988776665543332111222211 00
Q ss_pred --CCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCc
Q psy12852 610 --KPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPM 687 (1102)
Q Consensus 610 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl 687 (1102)
..+...+.+...... ........++++++|+|||||||.||||+++|+++..++......+++.++|++++.+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 240 (546)
T PRK08314 164 LAPGGVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPL 240 (546)
T ss_pred ccccccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCc
Confidence 001112222222111 111234577899999999999999999999999999988888888899999999999999
Q ss_pred hhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHH
Q psy12852 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGD 765 (1102)
Q Consensus 688 ~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~ 765 (1102)
+|..|+...++.++..|+++++.+.+++..+.+.++++++|++.++|+++..++...... ....++.++.||++++++
T Consensus 241 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~ 320 (546)
T PRK08314 241 FHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEA 320 (546)
T ss_pred hHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHH
Confidence 999997888999999999999999999999999999999999999999999888754322 234678888899999999
Q ss_pred HHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC
Q psy12852 766 IWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842 (1102)
Q Consensus 766 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~ 842 (1102)
++++|.+.++. ++++.||+||++..++.... .....|.+. ....+.++|++++.++ +.
T Consensus 321 ~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~-------~g~~~~i~d~~~~~~~-----------~~ 381 (546)
T PRK08314 321 VAERLKELTGL-DYVEGYGLTETMAQTHSNPPDRPKLQCLGIPT-------FGVDARVIDPETLEEL-----------PP 381 (546)
T ss_pred HHHHHHHHcCC-cEEecccccccccceecCCCcCCCCCccCccc-------CCeEEEEEeCCCCcCC-----------CC
Confidence 99999998875 89999999999876654322 122333332 3445666776656544 66
Q ss_pred CCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHH
Q psy12852 843 NQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTME 921 (1102)
Q Consensus 843 g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~e 921 (1102)
|..||++ +.|+ .++.||++++ .+.+.|... ++.+||+|||+|+++++|.+++.||+||+||++|+||+|.|
T Consensus 382 g~~Gel~----v~g~-~~~~gY~~~~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e 453 (546)
T PRK08314 382 GEVGEIV----VHGP-QVFKGYWNRPEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAE 453 (546)
T ss_pred CCceEEE----EECC-chhccccCChhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHH
Confidence 7777766 5588 4788999986 566666532 45689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC----ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccc
Q psy12852 922 VEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN----QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997 (1102)
Q Consensus 922 IE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~----~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKi 997 (1102)
||++|.++|+|.+++|++.++.. .++. +++++.... ..+.++++++++++||+|++|..++++++||+|+|||+
T Consensus 454 IE~~i~~~~~v~~~~v~~~~~~~-~~~~-~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv 531 (546)
T PRK08314 454 VENLLYKHPAIQEACVIATPDPR-RGET-VKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKI 531 (546)
T ss_pred HHHHHHhCcchheEEEEeCCCcc-cCce-eEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccce
Confidence 99999999999999999866543 3343 444443221 34568999999999999999999999999999999999
Q ss_pred hhhhhhhcCC
Q psy12852 998 KKIQLQNEGF 1007 (1102)
Q Consensus 998 dr~~L~~~~~ 1007 (1102)
+|++|++...
T Consensus 532 ~r~~L~~~~~ 541 (546)
T PRK08314 532 LWRQLQEQEK 541 (546)
T ss_pred eHHHHHHHHh
Confidence 9999987643
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=580.99 Aligned_cols=494 Identities=19% Similarity=0.210 Sum_probs=379.0
Q ss_pred HHHHHHHHhhcccCCcccchhhc---------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHc
Q psy12852 483 YSRFKQEASNARSTNDAAATTVK---------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~---------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~a 553 (1102)
+..+.+ +++.+|+++|+++. -+|+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++
T Consensus 56 ~~~l~~---~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 132 (629)
T PRK10524 56 HNAVDR---HLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARI 132 (629)
T ss_pred HHHHHH---hhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 444444 47789999999852 139999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCCchhhhhhhhccCceEEEEcCcc---------hhHHHHHHhcC--CCceEEEecCCC-------CCCCC
Q psy12852 554 GVISALINTNLKKQPLVHSISTVKSKAIIVSALY---------YPEIEAIRESI--PDVKLFLLDETK-------PDLPN 615 (1102)
Q Consensus 554 G~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~ 615 (1102)
|++++|++|.++.+++.+++++++++++|+++.. .+.+....... ....++.++... .....
T Consensus 133 Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 212 (629)
T PRK10524 133 GAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVD 212 (629)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCccc
Confidence 9999999999999999999999999999997642 23333332222 123444444211 01122
Q ss_pred hhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHh-hhhhhhccCCCCCcEEEEecCchhhhhHH
Q psy12852 616 LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG-GQVGKHLLSLGSGDVIYNCLPMYHSAGGL 694 (1102)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 694 (1102)
+.++....... ..+.....+++++||+|||||||.||||+++|+++... .......+++.++|++++.++++|..+..
T Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 291 (629)
T PRK10524 213 YATLRAQHLGA-RVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHS 291 (629)
T ss_pred HHHHHhcCCCC-CCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccch
Confidence 33332221111 11112346789999999999999999999999997543 34445567889999999999999998877
Q ss_pred HHHHhHhhcCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHH
Q psy12852 695 IGTIPALILGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDI 766 (1102)
Q Consensus 695 ~~i~~~l~~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~ 766 (1102)
+.++.+|+.|+++++.+. .++..+++.|+++++|++.++|++++.|...... ....+++.+++|||++++++
T Consensus 292 ~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~ 371 (629)
T PRK10524 292 YIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPT 371 (629)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHH
Confidence 889999999999999763 5789999999999999999999999998765421 22356788899999999999
Q ss_pred HHHHHHHhCcchhhhccccccCCcccccC-C------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccc
Q psy12852 767 WAKFVKRFHVQTIIEFYGATEGNANLVNM-D------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839 (1102)
Q Consensus 767 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~-~------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~ 839 (1102)
.+++.+.++. .++|.||+||++..++.. . ...++.|.+. ..+.+.++|+++|++
T Consensus 372 ~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~-------~g~~~~i~d~~~g~~----------- 432 (629)
T PRK10524 372 ASWISEALGV-PVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPM-------YGYNVKLLNEVTGEP----------- 432 (629)
T ss_pred HHHHHHhcCC-CeEeccccccccchhhcCCCCcccCcCCCCCcccCc-------CCceEEEEeCCCCCC-----------
Confidence 9999888875 899999999998433221 1 1122333332 344566677644544
Q ss_pred ccCCCCcceEEEEeecCCc--ccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCcee
Q psy12852 840 CKYNQPGMIIGEIKQSDPS--RHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916 (1102)
Q Consensus 840 ~~~g~~Gel~gei~~~G~~--~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~r 916 (1102)
++.|+.||++ ++||. ..+.||++++ .+.+.++.. .+++||+|||+|++++||+++|+||.||+||++|+|
T Consensus 433 ~~~g~~Gel~----i~gp~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~r 505 (629)
T PRK10524 433 CGPNEKGVLV----IEGPLPPGCMQTVWGDDDRFVKTYWSL---FGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHR 505 (629)
T ss_pred CCCCCcEEEE----EcCCCChhhcCCccCChHHHHHhhhcc---CCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEE
Confidence 4778888766 45662 3667888876 333333322 146899999999999999999999999999999999
Q ss_pred echHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC-cc--------CHHHHHHHHHccCCCCCcceEEEEec
Q psy12852 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN-QV--------DLKLLVQGLDANLPAYARPLFVRIMK 987 (1102)
Q Consensus 917 i~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~-~~--------~~~~l~~~l~~~Lp~~~~P~~i~~l~ 987 (1102)
|+|.|||++|.+||+|.+++|++++++. .++..+++++.... .. ..++|+++++++|+.|++|..|++++
T Consensus 506 i~p~eIE~~l~~~p~V~e~~vvg~~d~~-~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~ 584 (629)
T PRK10524 506 LGTREIEESISSHPAVAEVAVVGVKDAL-KGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVS 584 (629)
T ss_pred eCHHHHHHHHHhCCCcceEEEEccccCC-CCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcC
Confidence 9999999999999999999999976554 34444444442221 11 25689999999999999999999999
Q ss_pred CccCCCCccchhhhhhhcCC
Q psy12852 988 AIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 988 ~lP~t~~GKidr~~L~~~~~ 1007 (1102)
+||+|+|||++|+.|++...
T Consensus 585 ~lP~T~sGKi~R~~L~~~~~ 604 (629)
T PRK10524 585 ALPKTRSGKLLRRAIQAIAE 604 (629)
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 99999999999999998754
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=566.19 Aligned_cols=504 Identities=24% Similarity=0.326 Sum_probs=384.4
Q ss_pred CCcccchhhcch---HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhh
Q psy12852 496 TNDAAATTVKNL---EAQIDEYSNKIARILQDDGF-KKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVH 571 (1102)
Q Consensus 496 ~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv-~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~ 571 (1102)
.|+++|+++.+. |+||.++++++|..|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+
T Consensus 14 ~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~ 93 (540)
T PRK13388 14 GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAA 93 (540)
T ss_pred cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHH
Confidence 699999987654 99999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred hhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCC
Q psy12852 572 SISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGL 651 (1102)
Q Consensus 572 il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~ 651 (1102)
++++++++++|++.+....+..+. .+..+++.++.. .+.+++...... .+.....++++++++|||||||+
T Consensus 94 ~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~ 164 (540)
T PRK13388 94 DIRRADCQLLVTDAEHRPLLDGLD--LPGVRVLDVDTP-----AYAELVAAAGAL--TPHREVDAMDPFMLIFTSGTTGA 164 (540)
T ss_pred HHHhcCCCEEEEChhhhHHHHhhc--ccCceEEEccch-----hhhhhhccccCc--CCCCCCCCCCeEEEEECCCCCCC
Confidence 999999999999887665554431 234455544321 122222211111 11123567999999999999999
Q ss_pred CceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhccccccc
Q psy12852 652 PKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGI 731 (1102)
Q Consensus 652 PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~ 731 (1102)
||||+++|+++..........+++.++|+++..+|++|..++...++.+|..|+++++.+.+++..+++.++++++|++.
T Consensus 165 PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~ 244 (540)
T PRK13388 165 PKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFN 244 (540)
T ss_pred CCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEE
Confidence 99999999999988888888899999999999999999998666666789999999998888999999999999999999
Q ss_pred ccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC-CCCCcccccCCCCC
Q psy12852 732 YIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD-NTEGAVGIIPTLLP 810 (1102)
Q Consensus 732 ~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~g~~~~~~~ 810 (1102)
.+|+.+..++..+........++.+++|++++++...+|.+.++. +++|.||+||++.+++... ...+++|.+.+
T Consensus 245 ~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~vG~p~~--- 320 (540)
T PRK13388 245 YVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGC-QVEDGYGSSEGAVIVVREPGTPPGSIGRGAP--- 320 (540)
T ss_pred ehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCC-ceecccccccccceeecCCCCCCCCCCCCCC---
Confidence 999999988876543222223444555778889999999998865 8999999999987665432 12344454432
Q ss_pred CcCCCeeeEEeecCCCCCcCCC-CCcccccc-cCCCCcceEEEEeec-CCcccccccCCch-HHHHHHhhcccCCCCeEE
Q psy12852 811 TFLHPVAIIQFDLVENQPIRDP-KTGLCIRC-KYNQPGMIIGEIKQS-DPSRHFYGYADKK-ESQKKILENVFKPGDKYF 886 (1102)
Q Consensus 811 ~~~~~~~~~~~d~~~g~~i~~~-~~~~~~~~-~~g~~Gel~gei~~~-G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~y 886 (1102)
++. ++|+++..++... .+...+.+ +.+..|| +++. |+ .++.||++++ .+.+.|. ++||
T Consensus 321 ----g~~--i~~~~~~~~~~~~~~d~~g~~~~~~~~~GE----l~v~~g~-~~~~gY~~~~~~t~~~~~-------~g~~ 382 (540)
T PRK13388 321 ----GVA--IYNPETLTECAVARFDAHGALLNADEAIGE----LVNTAGA-GFFEGYYNNPEATAERMR-------HGMY 382 (540)
T ss_pred ----CcE--EEcCCCCccccceeccCccccccCCCcceE----EEEecCC-cccccccCChHHHHHHhh-------cCce
Confidence 122 2233321211100 00000111 2344555 5565 77 5889999987 5555552 5799
Q ss_pred EecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHH
Q psy12852 887 LSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKL 965 (1102)
Q Consensus 887 rTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~ 965 (1102)
+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+|.+|+|++++++. .|+..+++++ .++...+.++
T Consensus 383 ~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~-~g~~~~~~v~~~~~~~~~~~~ 461 (540)
T PRK13388 383 WSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDER-VGDQVMAALVLRDGATFDPDA 461 (540)
T ss_pred eccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCC-CCceeEEEEEECCCCcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999976554 3444444444 4444577889
Q ss_pred HHHHHHcc--CCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHH
Q psy12852 966 LVQGLDAN--LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNT 1031 (1102)
Q Consensus 966 l~~~l~~~--Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1102)
++++++.+ ||.|++|..++++++||+|++|||+|++|+++..........-+......+..+++..
T Consensus 462 l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (540)
T PRK13388 462 FAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATGDPVTLWVRRGGPAYRLMSEPA 529 (540)
T ss_pred HHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCCCCceEEEcCCCceEEecCHHH
Confidence 99999864 9999999999999999999999999999999875543222112222225555555544
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=583.60 Aligned_cols=485 Identities=16% Similarity=0.164 Sum_probs=373.5
Q ss_pred cCCcccchhhcc--------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 495 STNDAAATTVKN--------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 495 ~~P~~~Av~~~~--------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
.+|+++|+++.+ +|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~ 175 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV 175 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence 479999998642 399999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcc---------hhHHHHHHhcCCCc-eEEEecCCC--------CCCCChhHhhccCCCCCC
Q psy12852 567 QPLVHSISTVKSKAIIVSALY---------YPEIEAIRESIPDV-KLFLLDETK--------PDLPNLSDLMKTTPASEV 628 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 628 (1102)
+++.+++++++++++|+++.. .+.+..+...++.+ .++.++... .....++++....... .
T Consensus 176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 254 (655)
T PRK03584 176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAA-E 254 (655)
T ss_pred HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccC-C
Confidence 999999999999999998753 23334444444442 333333211 1223344443311111 1
Q ss_pred CCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHH-HhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL-LGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 629 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
.......+++++||+|||||||.||||+++|++++ +.+......+++.++|++++..++.|..+ ..++.+|+.|+++
T Consensus 255 ~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~L~~G~t~ 332 (655)
T PRK03584 255 LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMW--NWLVSGLLVGATL 332 (655)
T ss_pred CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhH--HHHHHHHHcCCEE
Confidence 11234567899999999999999999999999875 44666667788999999999999888754 3467899999999
Q ss_pred EEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhC-cch
Q psy12852 708 AIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFH-VQT 778 (1102)
Q Consensus 708 v~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~-~~~ 778 (1102)
++.+. .++..+++.++++++|++.++|++++.+...... ....+++.+++|||++++++++.+.+.++ .+.
T Consensus 333 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~ 412 (655)
T PRK03584 333 VLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVW 412 (655)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCce
Confidence 99763 5899999999999999999999999998764321 23457888899999999999999999884 568
Q ss_pred hhhccccccCCccccc-C---CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEee
Q psy12852 779 IIEFYGATEGNANLVN-M---DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ 854 (1102)
Q Consensus 779 l~n~YG~TE~~~~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~ 854 (1102)
+++.||+||++..... . +..++++|.+. ..+.+.++|++ |.+ + .|+.||++ +
T Consensus 413 ~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~-------~g~~~~ivd~~-g~~-----------~-~g~~GeL~----v 468 (655)
T PRK03584 413 LASISGGTDICSCFVGGNPLLPVYRGEIQCRG-------LGMAVEAWDED-GRP-----------V-VGEVGELV----C 468 (655)
T ss_pred EEeccChHhhhcccccCCCCCCcCCCccCCCc-------CCceeEEECCC-CCC-----------C-CCCceEEE----E
Confidence 9999999998643321 1 12233344332 23445556654 432 2 46677766 4
Q ss_pred cCC-cccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcc
Q psy12852 855 SDP-SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT 933 (1102)
Q Consensus 855 ~G~-~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~ 933 (1102)
.|| ..++.||++++.. .+|....+...++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.
T Consensus 469 ~gp~p~~~~gy~~~~~~-~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ 547 (655)
T PRK03584 469 TKPFPSMPLGFWNDPDG-SRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVL 547 (655)
T ss_pred ccCCCCCcceeeCCCcc-chHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcc
Confidence 565 2578899998743 23333333333569999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCCceeEEEEEcC-CCccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 934 EFTVYGVKVGDLDGRAGMIAIVDT-SNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 934 ~a~vv~~~~~~~~~~~~l~~~v~~-~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+|+|++++++. .++...++++.. +...+ .++|+++++++|++||+|..|+++++||+|+||||+|+.|++....
T Consensus 548 ea~vvg~~~~~-~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 548 DSLVIGQEWPD-GDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred eEEEEeeEcCC-CCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 99999977764 344444444422 22233 3689999999999999999999999999999999999999987644
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-60 Score=575.73 Aligned_cols=478 Identities=20% Similarity=0.264 Sum_probs=382.1
Q ss_pred ccCCcccchhhcc-----hHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 494 RSTNDAAATTVKN-----LEAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 494 ~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+.+|+++|+++.. +|+||.++++++|+.|++ .|+++||+|+|+++|+.++++++|||+++|++++|++|.++.+
T Consensus 50 ~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~ 129 (560)
T PLN02574 50 HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLG 129 (560)
T ss_pred cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHH
Confidence 4689999998753 399999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecC------CCCCCCChhHhhccCCCCCCCCCCCCCCCCeEE
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE------TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLL 641 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 641 (1102)
++.++++++++++++++.+....+... ...++.++. .......+.++........ ......++++++
T Consensus 130 ~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~ 202 (560)
T PLN02574 130 EIKKRVVDCSVGLAFTSPENVEKLSPL-----GVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFV--PKPVIKQDDVAA 202 (560)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHHhc-----CCcEEecCcccccccCccCcccHHHHhhcCCccc--ccCCCCcCCEEE
Confidence 999999999999999988765554331 122332221 1112233444333222111 123456789999
Q ss_pred EEECCCCCCCCceEEeccHHHHHhhhhhhh----ccCC-CCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHh
Q psy12852 642 YIYTSGTTGLPKAAIMPNFKVLLGGQVGKH----LLSL-GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716 (1102)
Q Consensus 642 ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~-~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~ 716 (1102)
|+|||||||.||||+++|+++...+..... .+.. ..+++++..+|++|..++...++.++..|+++++.+++++.
T Consensus 203 i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 282 (560)
T PLN02574 203 IMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDAS 282 (560)
T ss_pred EEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHH
Confidence 999999999999999999999887665432 2222 35678899999999999777788888999999999999999
Q ss_pred HHHHHHhhcccccccccHHHHHHHHhccCC---ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccc
Q psy12852 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKES---EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793 (1102)
Q Consensus 717 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 793 (1102)
.+++.|+++++|++.++|+++..|+..... ....+++.+++||++++++++++|.+.++++.+++.||+||++..++
T Consensus 283 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~ 362 (560)
T PLN02574 283 DMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGT 362 (560)
T ss_pred HHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceee
Confidence 999999999999999999999999876432 23456788889999999999999999998779999999999986554
Q ss_pred cCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch
Q psy12852 794 NMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868 (1102)
Q Consensus 794 ~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~ 868 (1102)
... ....++|.+. ....+.++|+++|.++ +.|+.||++ +.|+ .++.||++++
T Consensus 363 ~~~~~~~~~~~~~vG~~~-------~~~~v~i~d~~~g~~~-----------~~g~~Gei~----v~g~-~~~~GY~~~~ 419 (560)
T PLN02574 363 RGFNTEKLSKYSSVGLLA-------PNMQAKVVDWSTGCLL-----------PPGNCGELW----IQGP-GVMKGYLNNP 419 (560)
T ss_pred cCCCccccCCCCceeeeC-------CCcEEEEEeCCCCcCC-----------CCCCCeEEE----EECc-chhhhhcCCh
Confidence 211 1223344332 3455667776656544 778887766 5588 5888999887
Q ss_pred -HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCC
Q psy12852 869 -ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947 (1102)
Q Consensus 869 -~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~ 947 (1102)
.+.+.|. .++||+|||+|++++||.++++||+||+||++|++|+|.|||.+|.+||+|.+++|++++++. .+
T Consensus 420 ~~t~~~~~------~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~-~g 492 (560)
T PLN02574 420 KATQSTID------KDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKE-CG 492 (560)
T ss_pred hHhhhhcc------CCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCC-CC
Confidence 5555553 268999999999999999999999999999999999999999999999999999999866554 34
Q ss_pred ceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 948 RAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 948 ~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+..+++++ .++...+.++++++++++|++|++|..++++++||+|++|||+|+.|++....
T Consensus 493 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 493 EIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN 554 (560)
T ss_pred cceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence 44444444 23345678899999999999999999999999999999999999999987543
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-61 Score=495.93 Aligned_cols=492 Identities=18% Similarity=0.239 Sum_probs=411.8
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+... +|.++|+++|+++++. |+||+++++++|..|++.|+++||+|.+.+||..++++.++|.+|+|++.|
T Consensus 29 ~l~d~L~~--~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PV 106 (542)
T COG1021 29 TLTDILTD--HAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPV 106 (542)
T ss_pred cHHHHHHH--HHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchh
Confidence 34444444 6999999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCc-----chhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
.-=|++...++.+..+.+.++.+|.+.. ..+.++++....+.++.+.+.............+.... ....+..+
T Consensus 107 lALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a-~~~~~a~~ 185 (542)
T COG1021 107 LALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPA-GLFTPAPP 185 (542)
T ss_pred hccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCcc-ccCCcCCC
Confidence 9999999999999999999999998764 34566777777887666666543322222222222222 22222356
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhh-HHHHHHhHhhcCceEEEeCC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTK 712 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~-~~~~i~~~l~~G~~lv~~~~ 712 (1102)
.+++++||+..+-||||.||-+..||.....++....+.+++++.++.++.+|..|.+. +--.+++.+..||++|+.+.
T Consensus 186 ~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~ 265 (542)
T COG1021 186 ADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPD 265 (542)
T ss_pred CCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCC
Confidence 78889999999999999999999999999999999999999999999999999999775 13457889999999999999
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
.+++..+.+|++++||+..++|.+...++...... ...+++++-+||..+++++.+++...+++ .+.+.+||.|.-+
T Consensus 266 psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC-~LQQVFGMAEGLv 344 (542)
T COG1021 266 PSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGC-QLQQVFGMAEGLV 344 (542)
T ss_pred CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhCc-hHHHHhhhhhhhh
Confidence 99999999999999999999999999998875543 34578888899999999999999999988 9999999999877
Q ss_pred ccccCCCCCC----cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 791 NLVNMDNTEG----AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 791 ~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
..+..+..+. +.|+|.. ..-.+.++|.+ |+ ++++|++|++.. +|| ..++||++
T Consensus 345 nyTRLDDp~E~i~~TQGrPls------P~DEvrvvD~d-g~-----------pv~pGE~G~Llt----RGP-YTirGYyr 401 (542)
T COG1021 345 NYTRLDDPPEIIIHTQGRPLS------PDDEVRVVDAD-GN-----------PVAPGEVGELLT----RGP-YTIRGYYR 401 (542)
T ss_pred cccccCCchHheeecCCCcCC------CcceeEEecCC-CC-----------CCCCCCcceeee----cCC-eeeeeecc
Confidence 7776554432 3344321 23344555544 54 458999999874 499 58889999
Q ss_pred chHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCC
Q psy12852 867 KKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD 946 (1102)
Q Consensus 867 ~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 946 (1102)
.|+.+.+.+. .+|+|+|||++++++||+|.+.||.+|||+.+|++|-.+|||+.|..||.|.+|++|+.++.- -
T Consensus 402 ap~HNa~aF~-----a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDel-L 475 (542)
T COG1021 402 APEHNARAFD-----ADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDEL-L 475 (542)
T ss_pred CchhhhhccC-----cCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhh-c
Confidence 8865555443 389999999999999999999999999999999999999999999999999999999976654 6
Q ss_pred CceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 947 GRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 947 ~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
|+..+++++..+...+..+|+++|++. |..|++|.+|.++++||+|+-||||||+|++..
T Consensus 476 GEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l 536 (542)
T COG1021 476 GEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRL 536 (542)
T ss_pred CcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHh
Confidence 777888888777779999999999875 999999999999999999999999999999753
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=567.28 Aligned_cols=489 Identities=19% Similarity=0.234 Sum_probs=388.2
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc---------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHH
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN---------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~---------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l 551 (1102)
+..+.+.+ .++.+|+++|+++.. +|+||.++++++|++|.+.|+++|++|+++++|++++++++|||+
T Consensus 25 ~l~~~l~~---~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~ 101 (547)
T PRK13295 25 TINDDLDA---CVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACS 101 (547)
T ss_pred CHHHHHHH---HHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 44445544 488899999998653 299999999999999999999999999999999999999999999
Q ss_pred HcCceEeecCCCCCchhhhhhhhccCceEEEEcCcc-----hhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCC-
Q psy12852 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY-----YPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTP- 624 (1102)
Q Consensus 552 ~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 624 (1102)
++|++++|++|.++.+++.+++++++++++|+++.. .+.+..+....+.. .++.++.. ....+.+......
T Consensus 102 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 179 (547)
T PRK13295 102 RIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD--GADSFEALLITPAW 179 (547)
T ss_pred hcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC--CccCHHHHhhCCcc
Confidence 999999999999999999999999999999998764 22233333333433 23333321 2223433332110
Q ss_pred ----C-CCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHh
Q psy12852 625 ----A-SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIP 699 (1102)
Q Consensus 625 ----~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~ 699 (1102)
. ..........++++++|+|||||||.||||+++|+++...+......+++.+++++++..|++|..+++..++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 259 (547)
T PRK13295 180 EQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMM 259 (547)
T ss_pred ccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHH
Confidence 0 00111123567899999999999999999999999999988888888899999999999999999998899999
Q ss_pred HhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcc
Q psy12852 700 ALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ 777 (1102)
Q Consensus 700 ~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~ 777 (1102)
++..|+++++.+.+++..+++.++++++|++.++|+++..|...... ....+++.+++||+++++++.+++.+.++ .
T Consensus 260 ~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~ 338 (547)
T PRK13295 260 PVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALG-A 338 (547)
T ss_pred HHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhC-C
Confidence 99999999999889999999999999999999999999988765432 23346788889999999999999999885 4
Q ss_pred hhhhccccccCCcccccCCCC-----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEE
Q psy12852 778 TIIEFYGATEGNANLVNMDNT-----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852 (1102)
Q Consensus 778 ~l~n~YG~TE~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei 852 (1102)
+++|.||+||++.+++..... ...+|.+. .++.+.++|++ +. +++.|+.||++
T Consensus 339 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~v~i~d~~-~~-----------~~~~g~~Gel~--- 396 (547)
T PRK13295 339 KIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL-------PGVEVRVVDAD-GA-----------PLPAGQIGRLQ--- 396 (547)
T ss_pred CeEEeccCCCCCCeeeccCCCcchhccCcccccc-------CCcEEEEECCC-CC-----------CCCCCCCCeEE---
Confidence 899999999998765543221 12223321 23455556644 33 45778888866
Q ss_pred eecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCc
Q psy12852 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPY 932 (1102)
Q Consensus 853 ~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V 932 (1102)
++|+ .++.||++++..++.. .++||+|||+|+++++|.+++.||.||+||++|+||+|.|||.+|.++++|
T Consensus 397 -v~g~-~~~~gY~~~~~~t~~~-------~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v 467 (547)
T PRK13295 397 -VRGC-SNFGGYLKRPQLNGTD-------ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAI 467 (547)
T ss_pred -EEcC-cccccccCCccccccC-------CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCe
Confidence 4588 4788999987433221 256999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 933 TEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 933 ~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
.+++|++++++. .++...++++ ......+.+++++++++ .|+.||+|..++++++||+|++||++|++|+++..
T Consensus 468 ~~~~v~~~~~~~-~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~ 543 (547)
T PRK13295 468 AQVAIVAYPDER-LGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLR 543 (547)
T ss_pred eeEEEEeeecCC-CCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHh
Confidence 999999977654 3343443333 22334667899999986 79999999999999999999999999999987653
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-59 Score=562.87 Aligned_cols=490 Identities=27% Similarity=0.406 Sum_probs=385.8
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..+++. +|+.+|+++|+.+.+. |+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 23 l~~~l~~--~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vp 100 (542)
T PRK06155 23 LPAMLAR--QAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVP 100 (542)
T ss_pred HHHHHHH--HHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEE
Confidence 4444444 5899999999987664 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC-ceEEEecCCCCC--CCChhHhhccCCCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPD--LPNLSDLMKTTPASEVKPSEPLQT 636 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1102)
+++.++.+++..+++++++++++++.+....+......... .+++.++..... ...+... ...............+
T Consensus 101 l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 179 (542)
T PRK06155 101 INTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTA-PLPPLDAPAPAAAVQP 179 (542)
T ss_pred eccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchh-hhcccCCCCCCCCCCC
Confidence 99999999999999999999999998877666554333222 234444432110 0000000 0000001111134567
Q ss_pred CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHh
Q psy12852 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716 (1102)
Q Consensus 637 ~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~ 716 (1102)
+++++|+|||||||.||||+++|+++..........+++++++++++..|++|..+ +..++.++..|+++++.+++++.
T Consensus 180 ~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~-~~~~~~~l~~G~~~~~~~~~~~~ 258 (542)
T PRK06155 180 GDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNA-LNAFFQALLAGATYVLEPRFSAS 258 (542)
T ss_pred CCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHH-HHHHHHHHHcCceEEeeCCCCHH
Confidence 89999999999999999999999999888777778889999999999999999998 66789999999999999999999
Q ss_pred HHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC
Q psy12852 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796 (1102)
Q Consensus 717 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 796 (1102)
.+++.|+++++|++.++|+++..|............++..+.|+.+++.+.+.|.+.++. .++|.||+||++..++...
T Consensus 259 ~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~ 337 (542)
T PRK06155 259 GFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGV-DLLDGYGSTETNFVIAVTH 337 (542)
T ss_pred HHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCC-CEEeeecccccCccccCCC
Confidence 999999999999999999999998876544333333344333444789999999998865 8999999999987765432
Q ss_pred --CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCc--ccccccCCch-HHH
Q psy12852 797 --NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS--RHFYGYADKK-ESQ 871 (1102)
Q Consensus 797 --~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~--~~~~gY~~~~-~t~ 871 (1102)
...+.+|.+. ..+.+.++|++ +. +++.|..||++ +.|+. .++.||++++ .+.
T Consensus 338 ~~~~~~~vG~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gei~----v~~~~~~~~~~GY~~~~~~~~ 394 (542)
T PRK06155 338 GSQRPGSMGRLA-------PGFEARVVDEH-DQ-----------ELPDGEPGELL----LRADEPFAFATGYFGMPEKTV 394 (542)
T ss_pred CCCCCCCcCccC-------CCceEEEECCC-CC-----------CCCCCCceEEE----EecCCccccchhhcCCHHHHH
Confidence 2233344332 23444455544 43 34778888877 34552 4788999987 444
Q ss_pred HHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeE
Q psy12852 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951 (1102)
Q Consensus 872 ~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l 951 (1102)
+.| . ++||+|||+|++++||+++|+||+||+||++|.+|+|.|||++|.++|+|.+++|++++++. .+....
T Consensus 395 ~~~-~------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~-~~~~~~ 466 (542)
T PRK06155 395 EAW-R------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSEL-GEDEVM 466 (542)
T ss_pred Hhh-c------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccc-cCceEE
Confidence 444 2 68999999999999999999999999999999999999999999999999999999876544 223333
Q ss_pred EEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 952 IAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 952 ~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++++ ..+...+..+++++|+++||.|++|..|++++++|+|++||++|++|+++...
T Consensus 467 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~ 524 (542)
T PRK06155 467 AAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVT 524 (542)
T ss_pred EEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccC
Confidence 3333 44456788999999999999999999999999999999999999999987654
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=570.13 Aligned_cols=480 Identities=22% Similarity=0.260 Sum_probs=381.7
Q ss_pred cc-cCCcccchhhcc-------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCC
Q psy12852 493 AR-STNDAAATTVKN-------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNL 564 (1102)
Q Consensus 493 a~-~~P~~~Av~~~~-------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~ 564 (1102)
+. ..|+++|+.+.+ +|+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|+++.+
T Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~ 132 (570)
T PRK04319 53 ADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAF 132 (570)
T ss_pred hccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEccccccc
Confidence 44 579999997642 3999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCC---CCCCChhHhhccCCCCCCCCCCCCCCCCeE
Q psy12852 565 KKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETK---PDLPNLSDLMKTTPASEVKPSEPLQTSDSL 640 (1102)
Q Consensus 565 p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 640 (1102)
+.+++.+++++++++++|++......... ...+.. .++.++... .....+.+......... ......+++++
T Consensus 133 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a 208 (570)
T PRK04319 133 MEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEF--DIEWTDREDGA 208 (570)
T ss_pred CHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcC--CccccCCCCCE
Confidence 99999999999999999998765443321 123332 333333221 12334544443322211 11345678999
Q ss_pred EEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC-CCCHhHHH
Q psy12852 641 LYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT-KFSASNYF 719 (1102)
Q Consensus 641 ~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~-~~~~~~l~ 719 (1102)
+|+|||||||.||||+++|+++...+......+++.++|++++..|++|..+....++.++..|+++++.+ .+++..++
T Consensus 209 ~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 288 (570)
T PRK04319 209 ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWY 288 (570)
T ss_pred EEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHH
Confidence 99999999999999999999999888887888899999999999999999988889999999999999976 48999999
Q ss_pred HHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC
Q psy12852 720 RDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795 (1102)
Q Consensus 720 ~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 795 (1102)
+.|+++++|++.++|++++.|+..... ....+++.+++||+++++++.+++.+.++. ++++.||+||++..++..
T Consensus 289 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~i~~~YG~tE~~~~~~~~ 367 (570)
T PRK04319 289 RILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGL-PIHDNWWMTETGGIMIAN 367 (570)
T ss_pred HHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCC-CeEeceeecccCCEEEec
Confidence 999999999999999999999875421 233567888999999999999999988875 899999999998655422
Q ss_pred ----CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchH-H
Q psy12852 796 ----DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE-S 870 (1102)
Q Consensus 796 ----~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~-t 870 (1102)
...++++|.+. ....+.++|++ +. +++.|++||++++ +.+| .++.||++++. +
T Consensus 368 ~~~~~~~~~~~G~p~-------~g~~~~i~d~~-~~-----------~~~~g~~Gel~i~--~~~~-~~~~GY~~~~~~~ 425 (570)
T PRK04319 368 YPAMDIKPGSMGKPL-------PGIEAAIVDDQ-GN-----------ELPPNRMGNLAIK--KGWP-SMMRGIWNNPEKY 425 (570)
T ss_pred CCCCCCCCCcCcCCC-------CCCEEEEECCC-CC-----------CCCCCCceEEEEc--CCCC-hHHhHhcCCHHHh
Confidence 12334445442 23344455543 32 3377888887733 2336 58899999974 4
Q ss_pred HHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCcee
Q psy12852 871 QKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG 950 (1102)
Q Consensus 871 ~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~ 950 (1102)
.+.|. ++||+|||+|+++++|+++++||+||+||++|++|+|.|||++|.++|+|.+++|++++++. .++..
T Consensus 426 ~~~~~-------~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~-~g~~~ 497 (570)
T PRK04319 426 ESYFA-------GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPV-RGEII 497 (570)
T ss_pred hhhhc-------CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcC-CceEE
Confidence 44442 57999999999999999999999999999999999999999999999999999999866543 33433
Q ss_pred EEEEEcCC-CccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 951 MIAIVDTS-NQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 951 l~~~v~~~-~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
.++++..+ ...+ .++|+++++++||.|++|..|+++++||+|++||++|++|+++..
T Consensus 498 ~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 498 KAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 33333222 1222 368999999999999999999999999999999999999998743
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=564.21 Aligned_cols=491 Identities=16% Similarity=0.187 Sum_probs=380.6
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
.++.+++.. +++++|+++|+.+.+ +|+||.++++++|++|.+.|+++|++|+|+++|+.++++++|||+++|+
T Consensus 16 ~~l~~~l~~--~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 93 (534)
T PRK05852 16 PRIADLVEV--AATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93 (534)
T ss_pred ccHHHHHHH--HHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCc
Confidence 345555554 588999999987633 4999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC---CCCCChhHhhccCCCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK---PDLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
+++|++|.++.+++.+++++++++++|++................. .+.+.... ...... ...............
T Consensus 94 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 171 (534)
T PRK05852 94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPL-TVNVGGDSGPSGGTLSV-HLDAATEPTPATSTP 171 (534)
T ss_pred EEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccce-eeeeccccccccccccc-ccccccCCCcccccc
Confidence 9999999999999999999999999999765332111100000001 11111100 000000 000000000111112
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC-
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT- 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~- 711 (1102)
...++++++++|||||||.||||+++|+++.+.+......+++..+|++++..|++|..++...++.++..|+++++.+
T Consensus 172 ~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 251 (534)
T PRK05852 172 EGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPAR 251 (534)
T ss_pred CCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCC
Confidence 2235688999999999999999999999999988888888899999999999999999998888999999999998865
Q ss_pred -CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 712 -KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 712 -~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
.+++..+++.|+++++|.++++|+++..|....... ....++.++.+|+++++++++.|.+.++. ++++.||+|
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~-~v~~~YG~t 330 (534)
T PRK05852 252 GRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAA-PVVCAFGMT 330 (534)
T ss_pred cCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCC-ChhhccCcc
Confidence 378999999999999999999999999998764322 23467778888999999999999999875 899999999
Q ss_pred cCCcccccCCCC--------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCc
Q psy12852 787 EGNANLVNMDNT--------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858 (1102)
Q Consensus 787 E~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~ 858 (1102)
|++..++..... ....|.+ ++. ..+.+.++|++ |. +++.|+.||++ +.|+
T Consensus 331 E~~~~~~~~~~~~~~~~~~~~~~~g~~---g~~--~g~~~~i~d~~-g~-----------~~~~g~~Gel~----v~g~- 388 (534)
T PRK05852 331 EATHQVTTTQIEGIGQTENPVVSTGLV---GRS--TGAQIRIVGSD-GL-----------PLPAGAVGEVW----LRGT- 388 (534)
T ss_pred ccchhhhcCCccccccccCcccccccC---CCC--CCCeEEEECCC-CC-----------CCCCCCceEEE----EecC-
Confidence 998766543211 0112221 111 34455566654 43 34778888766 4588
Q ss_pred ccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEE
Q psy12852 859 RHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937 (1102)
Q Consensus 859 ~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~v 937 (1102)
.++.||++++ .+.+.|. ++||+|||+|++|+||++++.||+||+||++|.+|+|.|||.+|.++|+|.+|+|
T Consensus 389 ~v~~gY~~~~~~t~~~~~-------~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v 461 (534)
T PRK05852 389 TVVRGYLGDPTITAANFT-------DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAV 461 (534)
T ss_pred cccchhcCCcccchhhhc-------CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence 5889999986 5555542 5799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCceeEEEEEc-CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 938 YGVKVGDLDGRAGMIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 938 v~~~~~~~~~~~~l~~~v~-~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++++.+. .++...++++. .....+.+++.++++++||.|++|..|++++++|+|++||++|++|++.+
T Consensus 462 ~g~~~~~-~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~ 530 (534)
T PRK05852 462 FGVPDQL-YGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQF 530 (534)
T ss_pred EecCCcC-cCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHh
Confidence 9966543 34444444443 33346789999999999999999999999999999999999999999865
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=558.90 Aligned_cols=487 Identities=22% Similarity=0.285 Sum_probs=394.8
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
.+.|.+ +++.+|+++|+.+.+. |+||.+.+.++|+.|.+.|+++|++|+++++++++++++++||+++|++++|
T Consensus 8 ~~~l~~---~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~ 84 (513)
T PRK07656 8 PELLAR---AARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVP 84 (513)
T ss_pred HHHHHH---HHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEe
Confidence 344444 4888999999998765 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEe-cCCCC-----CCCChhHhhccCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL-DETKP-----DLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
+++.++.+++..+++++++++++++..............+..+.+.+ ..... ....+.++...... ......
T Consensus 85 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 162 (513)
T PRK07656 85 LNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDP--AERAPE 162 (513)
T ss_pred cCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCC--CCCcCC
Confidence 99999999999999999999999998877666555444444333322 22111 11234444332221 112235
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKF 713 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~ 713 (1102)
..++++++|+|||||||.||||.++|+++.+.+......++++++|++++.+|++|..++...++.++..|+++++.+..
T Consensus 163 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 242 (513)
T PRK07656 163 VDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVF 242 (513)
T ss_pred CCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcC
Confidence 67789999999999999999999999999998988888899999999999999999999778899999999999998889
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
++..+++.|+++++|++.++|+++..|+...... ...+++.+++||+++++++.+.|.+.++...++|.||+||++.+
T Consensus 243 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 322 (513)
T PRK07656 243 DPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGV 322 (513)
T ss_pred CHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCc
Confidence 9999999999999999999999999998765432 34567888999999999999999999876589999999999877
Q ss_pred cccCCCC------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 792 LVNMDNT------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 792 ~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
++..... ..++|.+. ....+.++|++ +. +++.|..||++ +.|+ .++.||+
T Consensus 323 ~~~~~~~~~~~~~~~~vG~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~~~-~~~~gy~ 378 (513)
T PRK07656 323 TTFNRLDDDRKTVAGTIGTAI-------AGVENKIVNEL-GE-----------EVPVGEVGELL----VRGP-NVMKGYY 378 (513)
T ss_pred eeecCccccccccCCCccccC-------CCcEEEEECCC-CC-----------CCCCCCceEEE----EEcc-hhhhhhc
Confidence 6644321 22333332 33445555543 43 44777888766 4577 4788999
Q ss_pred CchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 866 ~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
+++......+. +++||+|||+|+++++|.++++||.||+||++|.||+|.|||++|.++++|.+++|++.+...
T Consensus 379 ~~~~~~~~~~~-----~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~- 452 (513)
T PRK07656 379 DDPEATAAAID-----ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDER- 452 (513)
T ss_pred CCHHHHhhhhc-----cCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcc-
Confidence 88743333222 367999999999999999999999999999999999999999999999999999999855443
Q ss_pred CCceeEEEEEc-CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 946 DGRAGMIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 946 ~~~~~l~~~v~-~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
.++...++++. .....+.++++++++++||.|++|..++++++||+|++||++|++|++
T Consensus 453 ~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 453 LGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred cCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 34444444442 235678899999999999999999999999999999999999999975
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-59 Score=567.20 Aligned_cols=490 Identities=17% Similarity=0.232 Sum_probs=383.6
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
..+.+++ +|+++|+++|+.+.. +|+||.++++++|+.|++.|+++|++|+++++++++++++++||+++|++
T Consensus 30 ~~~~l~~---~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 30 LPDFVLQ---DAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred HHHHHhh---hhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 3344444 488899999997531 39999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCC-CCCCCChhHhhccCCCCC-CCCCCCC
Q psy12852 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET-KPDLPNLSDLMKTTPASE-VKPSEPL 634 (1102)
Q Consensus 557 ~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~ 634 (1102)
++|+++..+.+++.+++++++++++|+++.....+..+ ...++.++.. ......+.+++....... .......
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL-----GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEI 181 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc-----CCcEEEecCCCCCCcccHHHHHhhccccCcccccccC
Confidence 99999999999999999999999999998877665442 1234444332 122344555443322111 1112345
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC--CCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS--LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK 712 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~ 712 (1102)
.++++++|+|||||||.||||+++|+++..++......++ ....++.+.+.|++|..+....++.+|..|+++++.+.
T Consensus 182 ~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 261 (546)
T PLN02330 182 LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSR 261 (546)
T ss_pred CcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecc
Confidence 5789999999999999999999999999876543221111 22346889999999999877778899999999999999
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccc--c--ccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccC
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEAD--Y--SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEG 788 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~--~--~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 788 (1102)
+++..+++.++++++|++.++|+++..|+........ . .++.++.||+++++++.++|.+.|++.++++.||+||+
T Consensus 262 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~ 341 (546)
T PLN02330 262 FELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEH 341 (546)
T ss_pred cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccccc
Confidence 9999999999999999999999999999875432221 1 35667889999999999999999977799999999999
Q ss_pred CcccccCCCC--------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccc
Q psy12852 789 NANLVNMDNT--------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860 (1102)
Q Consensus 789 ~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~ 860 (1102)
+.+....... ..++|.+ . .++.+.++|++++.+ +|.|+.||++ ++|+ .+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~vG~~------~-~~~~v~i~d~~~~~~-----------~p~g~~Gel~----v~g~-~~ 398 (546)
T PLN02330 342 SCITLTHGDPEKGHGIAKKNSVGFI------L-PNLEVKFIDPDTGRS-----------LPKNTPGELC----VRSQ-CV 398 (546)
T ss_pred ccceecCCCccccccccccCccccc------c-CCcEEEEEeCCCCcc-----------CCCCCceEEE----Eecc-hh
Confidence 8665432111 1123332 1 344555566554543 4778877766 5588 48
Q ss_pred ccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEE
Q psy12852 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940 (1102)
Q Consensus 861 ~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~ 940 (1102)
+.||++++....+.+. .++||+|||+|++++||.++++||+||+||++|++|+|.|||++|.++++|.+++|+++
T Consensus 399 ~~gy~~~~~~~~~~~~-----~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 473 (546)
T PLN02330 399 MQGYYNNKEETDRTID-----EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPL 473 (546)
T ss_pred hhhhccCccchhhhcc-----CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEec
Confidence 8999998743333322 37899999999999999999999999999999999999999999999999999999986
Q ss_pred EcCCCCCceeEEEEEc-CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 941 KVGDLDGRAGMIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 941 ~~~~~~~~~~l~~~v~-~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++.. .++...++++. .....+.++++++++++||.|++|+.|++++++|+|++||++|++|+++...
T Consensus 474 ~~~~-~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 474 PDEE-AGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred cccc-cCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 5543 33434443332 2334677899999999999999999999999999999999999999987654
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=577.52 Aligned_cols=485 Identities=16% Similarity=0.157 Sum_probs=360.6
Q ss_pred HHHHHHHHhhcccCCcccchhh-----c-------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHH
Q psy12852 483 YSRFKQEASNARSTNDAAATTV-----K-------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 550 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~-----~-------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~ 550 (1102)
+..+++. +++++|+++|+.+ + -+|+||+++++++|+.|++.|+++|++|+|+++|+++|++++|||
T Consensus 47 ~~~~l~~--~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 47 CWDVFRM--SVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred HHHHHHH--HHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 4344443 5889999999962 1 259999999999999999999999999999999999999999999
Q ss_pred HHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcC-CC-ceEEEecCCCC---------C--CCChh
Q psy12852 551 AKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESI-PD-VKLFLLDETKP---------D--LPNLS 617 (1102)
Q Consensus 551 l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~---------~--~~~~~ 617 (1102)
+++|+++||+++.++.+++.+++++++++++|++.+....+....... +. ..++.++.... + ...++
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 204 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD 204 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence 999999999999999999999999999999999876544332221111 11 23444432110 0 12344
Q ss_pred HhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhcc-----CCCCCcEEEEecCchhhhh
Q psy12852 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL-----SLGSGDVIYNCLPMYHSAG 692 (1102)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~~ 692 (1102)
++......... ......++|+++|+|||||||.||||++||+|+...+.+....+ +++++|++++++|++|.++
T Consensus 205 ~~~~~~~~~~~-~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 283 (666)
T PLN02614 205 EFLKLGEGKQY-DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFD 283 (666)
T ss_pred HHHhhcccCCC-CCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHH
Confidence 44332211111 11234679999999999999999999999999998776654433 5788999999999999988
Q ss_pred HHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--------------------------
Q psy12852 693 GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-------------------------- 746 (1102)
Q Consensus 693 ~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------- 746 (1102)
. ...+..+..|+++++.+ +++..+++.|+++++|+++++|++++.++.....
T Consensus 284 ~-~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 361 (666)
T PLN02614 284 R-VIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKK 361 (666)
T ss_pred H-HHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHc
Confidence 4 44566788999998875 5899999999999999999999999887642100
Q ss_pred --------c------------c-ccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CCCc
Q psy12852 747 --------E------------A-DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TEGA 801 (1102)
Q Consensus 747 --------~------------~-~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~ 801 (1102)
. . ...++.+++||+++++. +.+|.+.++++.++|+||+||++..++.... ..++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~-~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gs 440 (666)
T PLN02614 362 GQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASH-VESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGT 440 (666)
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHH-HHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCc
Confidence 0 0 03567778889999976 5778888875689999999999865443211 2344
Q ss_pred ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccC
Q psy12852 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFK 880 (1102)
Q Consensus 802 ~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~ 880 (1102)
+|++. ..+.+.++|...+. .++++.|++|||+ ++|| .++.||+++| .|.+.|.
T Consensus 441 vG~p~-------pg~evki~d~~~~~---------~~~~~~g~~GEl~----vrGp-~v~~GY~~~pe~T~~~f~----- 494 (666)
T PLN02614 441 VGPPV-------PNVDIRLESVPEME---------YDALASTPRGEIC----IRGK-TLFSGYYKREDLTKEVLI----- 494 (666)
T ss_pred ccCcC-------CceEEEEeeecccC---------cccCCCCCCceEE----EcCC-cccccccCCHHHhhhhhc-----
Confidence 55443 23344444422110 1244677777766 5698 5889999987 5666552
Q ss_pred CCCeEEEecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC
Q psy12852 881 PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN 959 (1102)
Q Consensus 881 ~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~ 959 (1102)
++||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++ +. .+..++++++++.
T Consensus 495 --dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g--~~---~~~~l~alvv~~~ 567 (666)
T PLN02614 495 --DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYG--NS---FESFLVAIANPNQ 567 (666)
T ss_pred --cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEe--cC---CcceEEEEEeCCH
Confidence 579999999999999999999999999997 799999999999999999999999998 21 1345666664432
Q ss_pred c------------cC----------HHHHHHHH-----HccCCCCCcceEEEEecC-c-----cCCCCccchhhhhhhcC
Q psy12852 960 Q------------VD----------LKLLVQGL-----DANLPAYARPLFVRIMKA-I-----EMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 960 ~------------~~----------~~~l~~~l-----~~~Lp~~~~P~~i~~l~~-l-----P~t~~GKidr~~L~~~~ 1006 (1102)
. .+ .+.+.+.+ ++.|+.|.+++.|..+++ | .+||++|+.|+.+.+.+
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y 647 (666)
T PLN02614 568 QILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYY 647 (666)
T ss_pred HHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHH
Confidence 1 01 11222322 357999999999998875 3 49999999999998764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=585.27 Aligned_cols=490 Identities=18% Similarity=0.205 Sum_probs=370.9
Q ss_pred hHHHHHHHHhhcccCCc-ccchhhcc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 482 TYSRFKQEASNARSTND-AAATTVKN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~-~~Av~~~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
..+.|.+ +++++|+ ++|+.+.+ +|+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++
T Consensus 206 ~~~~l~~---~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v 281 (718)
T PRK08043 206 LYEALLS---AQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI 281 (718)
T ss_pred HHHHHHH---HHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence 3444544 4888997 68886532 4999999999999999987 599999999999999999999999999999
Q ss_pred EeecCCCCCchhhhhhhhccCceEEEEcCcchhHHH--HHHhcCCCceEEEecCCCCCCCChhHh--hccCCCCCCCCCC
Q psy12852 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIE--AIRESIPDVKLFLLDETKPDLPNLSDL--MKTTPASEVKPSE 632 (1102)
Q Consensus 557 ~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 632 (1102)
++|+++.++.+++++++++++++++|++.+..+... .....++....+.+++.. ....+... .............
T Consensus 282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 360 (718)
T PRK08043 282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLK-DDVTTADKLWIFAHLLMPRLAQV 360 (718)
T ss_pred ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhh-hhcchhHHHHHHHHHhCCccccC
Confidence 999999999999999999999999999876543210 111112222333333211 00111110 0000000001112
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK 712 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~ 712 (1102)
...++|+++++|||||||.||||++||+++.+.+.+....++++++|++++.+|++|..++...++.++..|+++++.+.
T Consensus 361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~ 440 (718)
T PRK08043 361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS 440 (718)
T ss_pred CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence 34678999999999999999999999999999888888888999999999999999999977889999999999999875
Q ss_pred -CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 713 -FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 713 -~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
+++..+.+.+.++++|++..+|+++..+..........+++.+++||+++++++.+.|.+.++. ++++.||+||++..
T Consensus 441 ~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~ 519 (718)
T PRK08043 441 PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGL-RILEGYGVTECAPV 519 (718)
T ss_pred cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcCcccccceEEEEEeCccCCHHHHHHHHHHcCC-CeecccCcccccce
Confidence 6778889999999999999999999887664333334578888999999999999999998865 89999999999866
Q ss_pred cccCC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc-
Q psy12852 792 LVNMD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK- 867 (1102)
Q Consensus 792 ~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~- 867 (1102)
++... ...+++|++.+ ...+.++|++ | .|..| ||++.|+ .++.||++.
T Consensus 520 ~~~~~~~~~~~~svG~p~p-------g~~~~i~d~~-~---------------~~~~G----el~v~g~-~v~~GY~~~e 571 (718)
T PRK08043 520 VSINVPMAAKPGTVGRILP-------GMDARLLSVP-G---------------IEQGG----RLQLKGP-NIMNGYLRVE 571 (718)
T ss_pred EEecCCcccCCCCCCCcCC-------CCeeEEecCC-C---------------CCCce----EEEEecC-CccccccCCC
Confidence 54321 23344454432 2233333322 1 12334 4556788 588999983
Q ss_pred -hH-HHHHHhhcc-cCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 868 -KE-SQKKILENV-FKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 868 -~~-t~~~f~~~~-~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
+. +...+.... ....++||+|||+|++|+||+++|+||+||+||++|++|+|.|||+++.+++.+.+++|++++++.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~ 651 (718)
T PRK08043 572 KPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDAS 651 (718)
T ss_pred CcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCC
Confidence 22 111111000 001368999999999999999999999999999999999999999999999988888888755433
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
.++ .+++++. +...+.++++++++++ ||.||+|..|+++++||+|++|||||++|+++...
T Consensus 652 -~ge-~~v~~~~-~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 652 -KGE-ALVLFTT-DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred -CCc-eEEEEEc-CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 333 3445543 3457788999999987 99999999999999999999999999999987544
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=564.42 Aligned_cols=481 Identities=19% Similarity=0.247 Sum_probs=376.5
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+++.+|+++|+.+.+. |+||.++++++|++|.+ .|+++|++|+|+++|++++++++|||+++|++++|++|.++.+
T Consensus 33 ~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~ 112 (562)
T PRK05677 33 SCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAR 112 (562)
T ss_pred HHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHH
Confidence 5788999999987653 99999999999999997 5999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC---------------------------CCCCChhHhh
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK---------------------------PDLPNLSDLM 620 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 620 (1102)
++.+++++++++++|++......+..+.... ..+.+.+.+.. +....+.+.+
T Consensus 113 ~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (562)
T PRK05677 113 EMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDAL 191 (562)
T ss_pred HHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhhccccccccCCcccccHHHHH
Confidence 9999999999999999877666555443322 12222221100 0011122222
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC--CCC-CcEEEEecCchhhhhHHHHH
Q psy12852 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS--LGS-GDVIYNCLPMYHSAGGLIGT 697 (1102)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~-~d~~l~~~pl~~~~~~~~~i 697 (1102)
....... .......++++++|+|||||||+||||+++|+++...+......++ +.. .++++..+|++|..++...+
T Consensus 192 ~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~ 270 (562)
T PRK05677 192 AKGAGQP-VTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHC 270 (562)
T ss_pred hcCCCCC-CCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHH
Confidence 1111111 1112456789999999999999999999999999887665554443 333 36889999999999877788
Q ss_pred HhHhhcCceEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHh
Q psy12852 698 IPALILGSSIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 698 ~~~l~~G~~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~ 774 (1102)
+.++..|++.++.+ ..++..+++.|+++++|++.++|+++..++...... ...+++.+++||+++++++.++|.+.+
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~ 350 (562)
T PRK05677 271 MAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVT 350 (562)
T ss_pred HHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHc
Confidence 88899999877765 478999999999999999999999999887754322 234678889999999999999999987
Q ss_pred CcchhhhccccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEE
Q psy12852 775 HVQTIIEFYGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851 (1102)
Q Consensus 775 ~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~ge 851 (1102)
+. ++++.||+||++.+++.... .++++|.+. ....+.++|++ +. ++|.|+.||++
T Consensus 351 ~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~-------~~~~v~i~d~~-~~-----------~~~~g~~Gel~-- 408 (562)
T PRK05677 351 GC-AICEGYGMTETSPVVSVNPSQAIQVGTIGIPV-------PSTLCKVIDDD-GN-----------ELPLGEVGELC-- 408 (562)
T ss_pred CC-CeeccCCccccCcceeecCccCCCCCccCccC-------CCCEEEEECCC-CC-----------CCCCCCCeEEE--
Confidence 64 89999999999876653322 223344432 23445555544 33 45788888766
Q ss_pred EeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcC
Q psy12852 852 IKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930 (1102)
Q Consensus 852 i~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~ 930 (1102)
+.|+ .++.||++++ .+.+.|. +++||+|||+|++++||.+++.||+||+||++|++|+|.|||++|.++|
T Consensus 409 --v~g~-~~~~gY~~~~~~t~~~~~------~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~ 479 (562)
T PRK05677 409 --VKGP-QVMKGYWQRPEATDEILD------SDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALP 479 (562)
T ss_pred --EecC-ccchhhcCCchhhhhccC------CCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCC
Confidence 5688 4789999887 4554442 2689999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 931 PYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 931 ~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+|.+++|+++++.. .++...++++ .+....+.++++++++++||+|++|..|+++++||+|+|||++|++|+++.
T Consensus 480 ~v~~~~v~g~~~~~-~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~ 555 (562)
T PRK05677 480 GVLQCAAIGVPDEK-SGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEE 555 (562)
T ss_pred CccEEEEEeccCcc-CCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHH
Confidence 99999999966554 3333333333 334467889999999999999999999999999999999999999998754
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=571.61 Aligned_cols=483 Identities=15% Similarity=0.158 Sum_probs=364.1
Q ss_pred CCcccchhhcc--------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 496 TNDAAATTVKN--------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 496 ~P~~~Av~~~~--------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
.++++|+++.+ +|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+
T Consensus 97 ~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~ 176 (652)
T TIGR01217 97 AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGAR 176 (652)
T ss_pred CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHH
Confidence 46778876532 3999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcc---------hhHHHHHHhcCCCce-EEEecCCC---------CCCCChhHhhccCCCCCC
Q psy12852 568 PLVHSISTVKSKAIIVSALY---------YPEIEAIRESIPDVK-LFLLDETK---------PDLPNLSDLMKTTPASEV 628 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 628 (1102)
++.+++++++++++|+++.. .+.+..+...++.++ ++.++... .+...++++........
T Consensus 177 ~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 255 (652)
T TIGR01217 177 GVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE- 255 (652)
T ss_pred HHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCC-
Confidence 99999999999999998753 344444444444332 33332110 11223444433211111
Q ss_pred CCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHH-HhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL-LGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 629 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
.......++++++|+|||||||.||||+++|++++ +........++++++|++++.+|++|..+ . .++.+|+.|+++
T Consensus 256 ~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~l~~G~t~ 333 (652)
T TIGR01217 256 LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-N-WLVSGLATGATL 333 (652)
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-H-HHHHHHhcCcEE
Confidence 11134556899999999999999999999999965 44555566788999999999999998753 3 356899999999
Q ss_pred EEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccC----CccccccceeeeeccCCCHHHHHHHHHHhCc-ch
Q psy12852 708 AIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE----SEADYSHQVVKMIGVGMRGDIWAKFVKRFHV-QT 778 (1102)
Q Consensus 708 v~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~-~~ 778 (1102)
++.+. .++..+++.++++++|++..+|++++.+..... .....++|.+++|||++++++.+.+.+.++. ..
T Consensus 334 vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~ 413 (652)
T TIGR01217 334 VLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVW 413 (652)
T ss_pred EEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCce
Confidence 99863 378899999999999999888988887765321 1234578888999999999999999988753 45
Q ss_pred hhhccccccCCccccc-CCCC---CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEee
Q psy12852 779 IIEFYGATEGNANLVN-MDNT---EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ 854 (1102)
Q Consensus 779 l~n~YG~TE~~~~~~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~ 854 (1102)
+.+.||+||++..... .... .+++|.+. ....+.++|++ |.++ .|+.||++ +
T Consensus 414 ~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~-------~g~~v~ivd~~-g~~~------------~g~~GEl~----v 469 (652)
T TIGR01217 414 LASISGGTDICSCFAGANPTLPVHIGEIQAPG-------LGTAVQSWDPE-GKPV------------TGEVGELV----C 469 (652)
T ss_pred EEeccCHHHHhccccCCCCCCCCcCCccCCCc-------CCCceEEECCC-CCCC------------CCCccEEE----E
Confidence 7799999997533321 1111 22333321 23344556654 4332 36777766 4
Q ss_pred cCCc-ccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcc
Q psy12852 855 SDPS-RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT 933 (1102)
Q Consensus 855 ~G~~-~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~ 933 (1102)
.||. .++.||++++..+ ++....+...++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.
T Consensus 470 ~gp~p~~~~gy~~~~~~t-~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~ 548 (652)
T TIGR01217 470 TNPMPSMPIRFWNDPDGS-KYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVR 548 (652)
T ss_pred ecCCCccccceeCCCccc-hhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcc
Confidence 4652 4788999987422 2222222233579999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCCceeEEEEEc-CCCccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 934 EFTVYGVKVGDLDGRAGMIAIVD-TSNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 934 ~a~vv~~~~~~~~~~~~l~~~v~-~~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
+|+|++++++. .++..+++++. ++...+ .++|+++++++|++|++|+.|+++++||+|+||||+|+.|++...
T Consensus 549 eaavvg~~~~~-~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 549 ESLCIGQEQPD-GGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred eEEEEeeecCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHc
Confidence 99999977654 34444444432 222233 358999999999999999999999999999999999999998753
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=563.98 Aligned_cols=494 Identities=17% Similarity=0.207 Sum_probs=370.9
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
..+.+.+ .++++|+++|+.+.+. |+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 16 ~~~~l~~---~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~v 92 (579)
T PLN03102 16 PITFLKR---ASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLN 92 (579)
T ss_pred HHHHHHH---HHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEe
Confidence 3444444 4788999999987654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCC------CceEEEecCCCC------CCCChhHhhccCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP------DVKLFLLDETKP------DLPNLSDLMKTTPAS 626 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 626 (1102)
|++|.++.+++.++++.++++++|++.+..+.+..+....+ ..+++.++.... ....+.++.......
T Consensus 93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (579)
T PLN03102 93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPT 172 (579)
T ss_pred eccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCCC
Confidence 99999999999999999999999999887766665543322 234555543110 112233333222111
Q ss_pred CCC---CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhc
Q psy12852 627 EVK---PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALIL 703 (1102)
Q Consensus 627 ~~~---~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~ 703 (1102)
... ......++++++|+|||||||.||||+++|+++..........+.+...++++..+|++|..+ ....+.++..
T Consensus 173 ~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g-~~~~~~~~~~ 251 (579)
T PLN03102 173 PSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNG-WTFTWGTAAR 251 (579)
T ss_pred CcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcc-hhHHHHHHHh
Confidence 100 011245689999999999999999999999997654444444556677889999999999988 5666778999
Q ss_pred CceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhh
Q psy12852 704 GSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIE 781 (1102)
Q Consensus 704 G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n 781 (1102)
|+++++.+.+++..+++.|+++++|++.++|+++..|+...... ....++.+++||+++++.+.+.+.+ ++. ++++
T Consensus 252 g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~-~i~~ 329 (579)
T PLN03102 252 GGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-LGF-QVMH 329 (579)
T ss_pred cCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-cCC-eEEe
Confidence 99999998889999999999999999999999999998764322 2234566778899999999988865 554 8999
Q ss_pred ccccccCCcccccCCCCC------Cc--ccc-cCCCCCCcCCCe-eeEEeecCCCCCcCCCCCcccccccC--CCCcceE
Q psy12852 782 FYGATEGNANLVNMDNTE------GA--VGI-IPTLLPTFLHPV-AIIQFDLVENQPIRDPKTGLCIRCKY--NQPGMII 849 (1102)
Q Consensus 782 ~YG~TE~~~~~~~~~~~~------~~--~g~-~~~~~~~~~~~~-~~~~~d~~~g~~i~~~~~~~~~~~~~--g~~Gel~ 849 (1102)
.||+||++..++...... .. ... ...+.+. .+. .+.+.|.+.+.++ +. ++.||
T Consensus 330 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~v~i~~~~~~~~v-----------~~~~~~~GE-- 394 (579)
T PLN03102 330 AYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI--LGLADVDVKNKETQESV-----------PRDGKTMGE-- 394 (579)
T ss_pred ecCccccCccccccccccccccCCcccccccccCCCccc--ccccceEEecccccccc-----------CCCCCCceE--
Confidence 999999986543221100 00 000 0001000 011 1222233333322 32 23455
Q ss_pred EEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHh
Q psy12852 850 GEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK 928 (1102)
Q Consensus 850 gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~ 928 (1102)
|++.|+ .++.||++++ .+.+.| . ++||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+
T Consensus 395 --l~v~g~-~~~~GY~~~~~~t~~~f-~------~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~ 464 (579)
T PLN03102 395 --IVIKGS-SIMKGYLKNPKATSEAF-K------HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYK 464 (579)
T ss_pred --EEEECc-chhhhhcCChhhhHhhh-c------cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHh
Confidence 556788 5899999987 455444 2 5799999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEEEcCCCCCceeEEEEEcCC-Ccc----------CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccc
Q psy12852 929 YLPYTEFTVYGVKVGDLDGRAGMIAIVDTS-NQV----------DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997 (1102)
Q Consensus 929 ~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~-~~~----------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKi 997 (1102)
||.|.+++|++++++.. ++...++++..+ ... +..+++++++++||.|++|..++++++||+|++|||
T Consensus 465 ~p~V~~a~vv~~~~~~~-~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi 543 (579)
T PLN03102 465 YPKVLETAVVAMPHPTW-GETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543 (579)
T ss_pred CCCcceeEEEeccCccc-cceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccc
Confidence 99999999999776652 344444444222 111 357899999999999999999999999999999999
Q ss_pred hhhhhhhcCC
Q psy12852 998 KKIQLQNEGF 1007 (1102)
Q Consensus 998 dr~~L~~~~~ 1007 (1102)
+|++|+++..
T Consensus 544 ~r~~L~~~~~ 553 (579)
T PLN03102 544 LKPKLRDIAK 553 (579)
T ss_pred cHHHHHHHHH
Confidence 9999998753
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-59 Score=574.37 Aligned_cols=490 Identities=17% Similarity=0.144 Sum_probs=369.3
Q ss_pred HHHHHHHHhhcccCCcccchhhc------------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHH
Q psy12852 483 YSRFKQEASNARSTNDAAATTVK------------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 550 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~------------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~ 550 (1102)
+..+++. +++.+|+++|+++. -+|+||.++++++|++|++. +++||+|+|+++|++++++++|||
T Consensus 23 l~~~l~~--~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~ 99 (631)
T PRK07769 23 LVRHVER--WAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA 99 (631)
T ss_pred HHHHHHH--HHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence 4344443 47789999998752 23999999999999999987 899999999999999999999999
Q ss_pred HHcCceEeec-CCCCC--chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC---ceEEEecCCCCCCCChhHhhccCC
Q psy12852 551 AKLGVISALI-NTNLK--KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPDLPNLSDLMKTTP 624 (1102)
Q Consensus 551 l~aG~~~vpl-d~~~p--~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1102)
+++|++++|+ ++..+ .+++.+++++++++++|++....+.+.......+. .+++.++... ... .
T Consensus 100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~ 169 (631)
T PRK07769 100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP-------DEV---G 169 (631)
T ss_pred HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccc-------ccc---c
Confidence 9999999999 56665 68899999999999999998766655544333221 2333332210 000 0
Q ss_pred CCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 625 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
. ........++++++|+|||||||+||||++||+++...+......++++++|++++++|++|+.| +..++.+++.|
T Consensus 170 ~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g-l~~~~~~~~~G 246 (631)
T PRK07769 170 A--TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMG-LITVLLPALLG 246 (631)
T ss_pred c--ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchh-hHHHHHHHhhC
Confidence 0 01112356789999999999999999999999999988888888889999999999999999999 55677778889
Q ss_pred ceEEEeCC--C--CHhHHHHHHhhccc---ccccccHHHHHHHHhc---cC----CccccccceeeeeccCCCHHHHHHH
Q psy12852 705 SSIAIRTK--F--SASNYFRDCAKYKC---NAGIYIGEMCRYLLAS---KE----SEADYSHQVVKMIGVGMRGDIWAKF 770 (1102)
Q Consensus 705 ~~lv~~~~--~--~~~~l~~~i~~~~v---t~~~~~Ps~~~~l~~~---~~----~~~~~~l~~~~~~Ge~l~~~~~~~~ 770 (1102)
+++++.++ + ++..+++.+.++++ +++..+|+++..++.. +. .....+++.+++||+++++++.++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 326 (631)
T PRK07769 247 HYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKF 326 (631)
T ss_pred CeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHH
Confidence 99998864 3 89999999999886 7888999987766542 11 1133467788889999999999999
Q ss_pred HHHhC-----cchhhhccccccCCcccccCCCCCCc-----------cc--------------ccCCCCCCcCCCeeeEE
Q psy12852 771 VKRFH-----VQTIIEFYGATEGNANLVNMDNTEGA-----------VG--------------IIPTLLPTFLHPVAIIQ 820 (1102)
Q Consensus 771 ~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~~-----------~g--------------~~~~~~~~~~~~~~~~~ 820 (1102)
.+.|+ ...++|.||+||++..++........ .| ....+.+. ....+.+
T Consensus 327 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~--~~~~~~i 404 (631)
T PRK07769 327 NEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVG--VSEWAVI 404 (631)
T ss_pred HHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcC--CCcEEEE
Confidence 99873 23699999999998765533211100 00 00111111 2344556
Q ss_pred eecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc-----------CCCCeEEEe
Q psy12852 821 FDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF-----------KPGDKYFLS 888 (1102)
Q Consensus 821 ~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~-----------~~g~~~yrT 888 (1102)
+|+++|. ++|.|+.|||+ ++|| .++.||+|++ .|.++|...+. ..+++||||
T Consensus 405 vd~~~g~-----------~~~~ge~GEl~----v~gp-~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~T 468 (631)
T PRK07769 405 VDPETAS-----------ELPDGQIGEIW----LHGN-NIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRT 468 (631)
T ss_pred EcCCCCc-----------CCCCCCEEEEE----ecCC-CccccccCChhHHHHHHhhhcccccccccccCcccCCCeeec
Confidence 6655454 34667776655 6699 5889999986 67777764211 124689999
Q ss_pred cceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHh-cCCcce--eEEEEEEcC------------------CCCC
Q psy12852 889 GDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK-YLPYTE--FTVYGVKVG------------------DLDG 947 (1102)
Q Consensus 889 GDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~-~~~V~~--a~vv~~~~~------------------~~~~ 947 (1102)
||+|+++ ||+|+|+||+||+||++|+||+|.|||++|.+ ||+|.+ ++|++++++ ...+
T Consensus 469 GDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g 547 (631)
T PRK07769 469 GDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS 547 (631)
T ss_pred cccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC
Confidence 9999995 89999999999999999999999999999996 899998 888887662 1234
Q ss_pred ceeEEEEEc-CC-CccCHHHHHHHHHccCCC-CC-cceEEEEec--CccCCCCccchhhhhhhcCC
Q psy12852 948 RAGMIAIVD-TS-NQVDLKLLVQGLDANLPA-YA-RPLFVRIMK--AIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 948 ~~~l~~~v~-~~-~~~~~~~l~~~l~~~Lp~-~~-~P~~i~~l~--~lP~t~~GKidr~~L~~~~~ 1007 (1102)
+...++++. ++ ...+.++|.++++++|+. |+ .|+.+++++ +||+|++|||+|++|++.+.
T Consensus 548 e~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~ 613 (631)
T PRK07769 548 EQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYL 613 (631)
T ss_pred ccEEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHH
Confidence 444444432 22 246789999999999995 66 488888886 69999999999999997653
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=555.80 Aligned_cols=465 Identities=19% Similarity=0.222 Sum_probs=378.0
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+++|+++|+.+.+. |+||.++++++|+.|.+.|. +|++|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 10 ~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 88 (487)
T PRK07638 10 HASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDE 88 (487)
T ss_pred HHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHH
Confidence 4889999999988664 99999999999999999984 8999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.++++.++++++|++......+... ...++.++. +......... .........+++++|+|||||
T Consensus 89 ~~~~~~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGt 154 (487)
T PRK07638 89 LKERLAISNADMIVTERYKLNDLPDE-----EGRVIEIDE-------WKRMIEKYLP--TYAPIENVQNAPFYMGFTSGS 154 (487)
T ss_pred HHHHHHhCCCCEEEEecccccchhhc-----cceEEEehh-------hhhhhhhccc--cccccccCCCCcEEEEeCCCC
Confidence 99999999999999988655443321 123333321 1111111111 111112334678999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt 728 (1102)
||.||||+++|+++...+......+++.++|+++...|++|..+ +..++.++..|+++++.+.+++..+++.|+++++|
T Consensus 155 TG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-l~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t 233 (487)
T PRK07638 155 TGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLF-LYGAISTLYVGQTVHLMRKFIPNQVLDKLETENIS 233 (487)
T ss_pred CCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHH-HHHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCe
Confidence 99999999999999998888888899999999999999999887 78899999999999999989999999999999999
Q ss_pred cccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CCCcccc
Q psy12852 729 AGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TEGAVGI 804 (1102)
Q Consensus 729 ~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~ 804 (1102)
++.++|+++..|...... ..+...++++|++++.++.+++.+.+++.+++|.||+||++.++..... ...+.|.
T Consensus 234 ~~~~~P~~~~~l~~~~~~--~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 311 (487)
T PRK07638 234 VMYTVPTMLESLYKENRV--IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGR 311 (487)
T ss_pred EEEeCcHHHHHHHhCcCc--CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCc
Confidence 999999999999876332 2334445778999999999999999987799999999999977654321 2223443
Q ss_pred cCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCe
Q psy12852 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDK 884 (1102)
Q Consensus 805 ~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~ 884 (1102)
+. ....+.++|++ |. +++.|+.||++ +.|+ .++.||++++..+..+. .++
T Consensus 312 ~~-------~~~~~~i~d~~-g~-----------~~~~g~~Gel~----v~~~-~~~~gy~~~~~~~~~~~------~~g 361 (487)
T PRK07638 312 PF-------HNVQVRICNEA-GE-----------EVQKGEIGTVY----VKSP-QFFMGYIIGGVLARELN------ADG 361 (487)
T ss_pred cc-------CCcEEEEECCC-CC-----------CCCCCCCeEEE----Eecc-cceeeecCCHHHHhhhc------cCC
Confidence 32 23455556544 43 34778888766 5588 47889999885544432 268
Q ss_pred EEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHH
Q psy12852 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLK 964 (1102)
Q Consensus 885 ~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~ 964 (1102)
||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++++++. .++ .+++++.. ..+.+
T Consensus 362 ~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~-~g~-~~~~~v~~--~~~~~ 437 (487)
T PRK07638 362 WMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSY-WGE-KPVAIIKG--SATKQ 437 (487)
T ss_pred cEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchh-cCC-eeEEEEEC--CCCHH
Confidence 999999999999999999999999999999999999999999999999999999865543 333 34445543 46788
Q ss_pred HHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 965 LLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 965 ~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++++++++.|+.|++|..+++++++|+|++||++|++|+++...
T Consensus 438 ~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~ 481 (487)
T PRK07638 438 QLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIEN 481 (487)
T ss_pred HHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=553.42 Aligned_cols=479 Identities=27% Similarity=0.403 Sum_probs=372.9
Q ss_pred Ccccchhhcch---HHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhh
Q psy12852 497 NDAAATTVKNL---EAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHS 572 (1102)
Q Consensus 497 P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~i 572 (1102)
|+++|+.+.+. |+||.++++++|++|++. |++++++|+++++|+++++++++||+++|++++|+++.++.+++.++
T Consensus 17 ~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 96 (529)
T PRK07867 17 DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARD 96 (529)
T ss_pred cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHH
Confidence 78889887664 999999999999999997 89999999999999999999999999999999999999999999999
Q ss_pred hhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCC
Q psy12852 573 ISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLP 652 (1102)
Q Consensus 573 l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~P 652 (1102)
+++++++++|+++.....+..+. +...++.++. ..+.+.+....... .......++++++|+|||||||.|
T Consensus 97 l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~P 167 (529)
T PRK07867 97 IAHADCQLVLTESAHAELLDGLD---PGVRVINVDS-----PAWADELAAHRDAE-PPFRVADPDDLFMLIFTSGTSGDP 167 (529)
T ss_pred HHhCCCeEEEECHhHHHHHHhhc---cCceEEEecc-----ccHHHHhcccCCCC-CCcccCCccceEEEEECCCCCCCC
Confidence 99999999999987766554432 2334443332 12333332211111 111345778999999999999999
Q ss_pred ceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccc
Q psy12852 653 KAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIY 732 (1102)
Q Consensus 653 KgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~ 732 (1102)
|||+++|+++..+.......++++.+|+++..+|++|..+.+..++.++..|+++++.+++++..+++.++++++|++.+
T Consensus 168 Kgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~ 247 (529)
T PRK07867 168 KAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANY 247 (529)
T ss_pred cEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEec
Confidence 99999999999888888888999999999999999999997777888999999999998899999999999999999999
Q ss_pred cHHHHHHHHhccCCccc--cccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC-CCCcccccCCCC
Q psy12852 733 IGEMCRYLLASKESEAD--YSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN-TEGAVGIIPTLL 809 (1102)
Q Consensus 733 ~Ps~~~~l~~~~~~~~~--~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~g~~~~~~ 809 (1102)
+|+.+..++........ .+++ +++||+.+++. ..+|.+.++. ++++.||+||+++.++.... ..+++|.+.
T Consensus 248 ~p~~~~~ll~~~~~~~~~~~~lr-~~~gg~~~~~~-~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~g~~~--- 321 (529)
T PRK07867 248 VGKPLSYVLATPERPDDADNPLR-IVYGNEGAPGD-IARFARRFGC-VVVDGFGSTEGGVAITRTPDTPPGALGPLP--- 321 (529)
T ss_pred cHHHHHHHHhCCCcccccccceE-EEecCCCChHH-HHHHHHHhCC-cEEEeecccccccccccCCCCCCCCcCCCC---
Confidence 99999988876543221 2333 34567777665 5778888865 89999999999876553221 223334331
Q ss_pred CCcCCCeeeEEeecCCCCCcCCCCC-cccccccCCCCcceEEEEee-cCCcccccccCCchH-HHHHHhhcccCCCCeEE
Q psy12852 810 PTFLHPVAIIQFDLVENQPIRDPKT-GLCIRCKYNQPGMIIGEIKQ-SDPSRHFYGYADKKE-SQKKILENVFKPGDKYF 886 (1102)
Q Consensus 810 ~~~~~~~~~~~~d~~~g~~i~~~~~-~~~~~~~~g~~Gel~gei~~-~G~~~~~~gY~~~~~-t~~~f~~~~~~~g~~~y 886 (1102)
.. +.++|++++.++..... ...+..+.+..||+ ++ .|+ .++.||++++. +.+.| . ++||
T Consensus 322 ----~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel----~i~~g~-~~~~gy~~~~~~~~~~~-~------~g~~ 383 (529)
T PRK07867 322 ----PG--VAIVDPDTGTECPPAEDADGRLLNADEAIGEL----VNTAGP-GGFEGYYNDPEADAERM-R------GGVY 383 (529)
T ss_pred ----CC--EEEEECCCCCCCCCCccccccccccCCcceEE----EEecCC-cccccccCChHhhhhhh-c------CCeE
Confidence 11 34455544543311100 00001111125554 45 788 57899999874 44444 2 5799
Q ss_pred EecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHH
Q psy12852 887 LSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKL 965 (1102)
Q Consensus 887 rTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~ 965 (1102)
+|||+|+++++|+++|+||+||+||++|+||+|.|||++|.++|+|.+++|++++++. .++..+++++ .++...+.++
T Consensus 384 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~-~g~~~~a~vv~~~~~~~~~~~ 462 (529)
T PRK07867 384 WSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPV-VGDQVMAALVLAPGAKFDPDA 462 (529)
T ss_pred eeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCC-CCeeEEEEEEECCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999977654 3444444444 4445678999
Q ss_pred HHHHHHcc--CCCCCcceEEEEecCccCCCCccchhhhhhhcCCCC
Q psy12852 966 LVQGLDAN--LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009 (1102)
Q Consensus 966 l~~~l~~~--Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~ 1009 (1102)
++++++++ ||.|++|..|+++++||+|++||++|++|+++....
T Consensus 463 l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~ 508 (529)
T PRK07867 463 FAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC 508 (529)
T ss_pred HHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence 99999875 999999999999999999999999999999987553
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=562.34 Aligned_cols=490 Identities=19% Similarity=0.228 Sum_probs=366.5
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+..+.+++. |+++|+++|+.+.+ +|+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+
T Consensus 15 ~~~~~l~~~---a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~ 91 (540)
T PRK05857 15 TVLDRVFEQ---ARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGA 91 (540)
T ss_pred chHHHHHHH---HhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence 345666665 88999999997432 3999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQ 635 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1102)
+++|+++.++.+++.++++.++++++++++........+........++.++...... ...... ............
T Consensus 92 v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~ 167 (540)
T PRK05857 92 IAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTR-ESEHSL---DAASLAGNADQG 167 (540)
T ss_pred EEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccc-cccccc---cccccccccCCC
Confidence 9999999999999999999999999999876543222222222223334433211000 000000 000011123456
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh----hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK----HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
++++++++|||||||.||||+++|+++.++..... ..++...+++++..+|++|..+ ++..+.+++.|+++++ .
T Consensus 168 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~-l~~~~~~l~~G~~~v~-~ 245 (540)
T PRK05857 168 SEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGG-LWWILTCLMHGGLCVT-G 245 (540)
T ss_pred CCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccch-HHHHHHHhhcceeEEe-c
Confidence 78999999999999999999999999987654322 2345667889999999999998 5678889999999875 4
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
+.++..+++.|+++++|+++++|++++.|+..... ....+++.+++||++++....+ |.+.++ .++++.||+||++
T Consensus 246 ~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g-~~i~~~YG~TE~~ 323 (540)
T PRK05857 246 GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATG-VRTAQVYGLSETG 323 (540)
T ss_pred CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhC-CeeecccCCCcCC
Confidence 56889999999999999999999999998876432 2345677788899999887764 666665 4899999999998
Q ss_pred cccccCCC--------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccc
Q psy12852 790 ANLVNMDN--------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHF 861 (1102)
Q Consensus 790 ~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~ 861 (1102)
..+..... ..+++|.+. .++.+.++|++...+... ..++.|+.||++ ++|+. ++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~G~~~-------~g~~v~i~d~~~~~~~~~------~~~~~~~~Gel~----v~g~~-~~ 385 (540)
T PRK05857 324 CTALCLPTDDGSIVKIEAGAVGRPY-------PGVDVYLAATDGIGPTAP------GAGPSASFGTLW----IKSPA-NM 385 (540)
T ss_pred ceeeecccccccccccccCCcCccc-------CCcEEEEECccccCcccc------ccCCCCCcceEE----EeCcc-hh
Confidence 65433221 123344432 345566666553222210 123456666655 66884 78
Q ss_pred cccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEE
Q psy12852 862 YGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940 (1102)
Q Consensus 862 ~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~ 940 (1102)
.||++++ .+.+.|. ++||+|||+|++|++|++++.||.||+||++|+||+|.|||++|..||+|.+++|+++
T Consensus 386 ~GY~~~~~~t~~~~~-------~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~ 458 (540)
T PRK05857 386 LGYWNNPERTAEVLI-------DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEI 458 (540)
T ss_pred hhhhCCccchhhhcC-------CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEec
Confidence 8999886 5555553 5799999999999999999999999999999999999999999999999999999986
Q ss_pred EcCCCCCceeEEEEEcCCCccC---HH----HHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 941 KVGDLDGRAGMIAIVDTSNQVD---LK----LLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 941 ~~~~~~~~~~l~~~v~~~~~~~---~~----~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++.. .++...++++.. ...+ .+ .+.+++++.||+|++|..|++++++|+|+|||+||++|++....
T Consensus 459 ~~~~-~~~~~~~~vv~~-~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 459 PDEE-FGALVGLAVVAS-AELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred Cccc-cccceEEEEEeC-CCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 6543 333333333322 2222 23 34556678899999999999999999999999999999977543
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=564.63 Aligned_cols=487 Identities=18% Similarity=0.174 Sum_probs=364.4
Q ss_pred hcccCCcccchhhc-------------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 492 NARSTNDAAATTVK-------------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~-------------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
.++++|+++|+++. -+|+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 15 ~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v 94 (552)
T PRK09274 15 AAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPV 94 (552)
T ss_pred HHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEE
Confidence 47889999999763 24999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcC-CC-ceEEEecCC-CCCCCChhHhhccCCCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESI-PD-VKLFLLDET-KPDLPNLSDLMKTTPASEVKPSEPLQ 635 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1102)
|++|.++.+++.+++++++++++|+++... ....+.... .. ..++.++.. ......+.++....... ........
T Consensus 95 ~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 172 (552)
T PRK09274 95 LVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-LARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAA-PFPMADLA 172 (552)
T ss_pred EcCCCccHHHHHHHHHhcCCCEEEeccHHH-HHHHHhccCccchhheeccccccccCCccHHHhcccCccc-cCCCCCCC
Confidence 999999999999999999999999975211 111111100 11 122222221 11112333333111111 11123456
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC----
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT---- 711 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~---- 711 (1102)
++++++|+|||||||.||||+++|+++.+.+......+++.++|+.++.+|++|..+ +..|+++++.+
T Consensus 173 ~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~--------~~~g~~~~~~~~~~~ 244 (552)
T PRK09274 173 PDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFG--------PALGMTSVIPDMDPT 244 (552)
T ss_pred CCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhh--------hhhCCeEEecCcccc
Confidence 789999999999999999999999999999888888899999999999999876544 45688888764
Q ss_pred ---CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCc-chhhhcccc
Q psy12852 712 ---KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHV-QTIIEFYGA 785 (1102)
Q Consensus 712 ---~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~-~~l~n~YG~ 785 (1102)
.+++..+++.|+++++|+++++|++++.|++.... ....+++.+++||+++++++.++|.+.++. +++++.||+
T Consensus 245 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~ 324 (552)
T PRK09274 245 RPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGA 324 (552)
T ss_pred cccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccc
Confidence 36889999999999999999999999999875432 244578888999999999999999999963 689999999
Q ss_pred ccCCcccccCCCC-------------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEE
Q psy12852 786 TEGNANLVNMDNT-------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852 (1102)
Q Consensus 786 TE~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei 852 (1102)
||++.+++..... ..++|++. ..+.+.++|+.++. +... ...++++.|+.||++
T Consensus 325 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-------~~~~~~ivd~~~~~-~~~~--~~~~~~~~g~~Gel~--- 391 (552)
T PRK09274 325 TEALPISSIESREILFATRAATDNGAGICVGRPV-------DGVEVRIIAISDAP-IPEW--DDALRLATGEIGEIV--- 391 (552)
T ss_pred cccceeEeecchhhhccccccccCCCCcccCccC-------CCceEEEEeccccc-cccc--cccccCCCCCeeEEE---
Confidence 9998765432111 01223322 33455566644221 1000 012456778877766
Q ss_pred eecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCC
Q psy12852 853 KQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931 (1102)
Q Consensus 853 ~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~ 931 (1102)
++|+ .++.||++++ .|...|+.++ .|.+||+|||+|++|+||+|+++||+||+||++|++|+|.|||++|.+||+
T Consensus 392 -v~g~-~~~~GY~~~~~~t~~~~~~~~--~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~ 467 (552)
T PRK09274 392 -VAGP-MVTRSYYNRPEATRLAKIPDG--QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPG 467 (552)
T ss_pred -EecC-cccccccCChHHhhhhhcccC--CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcc
Confidence 5688 4889999987 5555565431 223699999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCC---CCCcceEEEEecCccCC--CCccchhhhhhhc
Q psy12852 932 YTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLP---AYARPLFVRIMKAIEMT--GTFKIKKIQLQNE 1005 (1102)
Q Consensus 932 V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp---~~~~P~~i~~l~~lP~t--~~GKidr~~L~~~ 1005 (1102)
|.+|+|++++.+ .++...++++ .++...+.++++++|++.+. .++.|..|+++++||+| +||||||++|+++
T Consensus 468 V~~~~v~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~ 545 (552)
T PRK09274 468 VKRSALVGVGVP--GAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVW 545 (552)
T ss_pred cceeEEEEeCCC--CCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHH
Confidence 999999996543 2333333333 23334455556666655544 45677899999999999 7999999999986
Q ss_pred CC
Q psy12852 1006 GF 1007 (1102)
Q Consensus 1006 ~~ 1007 (1102)
..
T Consensus 546 ~~ 547 (552)
T PRK09274 546 AA 547 (552)
T ss_pred HH
Confidence 43
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-58 Score=553.47 Aligned_cols=486 Identities=16% Similarity=0.208 Sum_probs=380.0
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..++.+ +++++|+++|+.+.+. |+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|+++++
T Consensus 25 l~~~~~~--~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~ 102 (527)
T TIGR02275 25 LTDILRD--QAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVL 102 (527)
T ss_pred HHHHHHH--HHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEec
Confidence 4444444 5888999999988664 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchh-----HHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYP-----EIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPL 634 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1102)
+++..+.+++.++++.+++++++++..... ....+....+....+.+.................... ......
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 180 (527)
T TIGR02275 103 ALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESPAEP--VKFPPT 180 (527)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCcCcc--ccCCCC
Confidence 999999999999999999999999875421 2222222233333332222111111111111111111 112345
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH-HHHhHhhcCceEEEeCCC
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI-GTIPALILGSSIAIRTKF 713 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~i~~~l~~G~~lv~~~~~ 713 (1102)
.++++++++|||||||.||||+++|+++...+......+.++.+|+++..+|++|.+++.. .++.++..|+++++.+.+
T Consensus 181 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~ 260 (527)
T TIGR02275 181 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDP 260 (527)
T ss_pred CCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCC
Confidence 7789999999999999999999999999998888888889999999999999999888444 588999999999998889
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
++..+++.++++++|++.++|+++..|+..... ....+++.+++||++++.++.+++.+.++. ++++.||+||+++.
T Consensus 261 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~~~~~YG~tE~~~~ 339 (527)
T TIGR02275 261 SPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGC-QLQQVFGMAEGLVN 339 (527)
T ss_pred CHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCC-eEEeeeccCccCcc
Confidence 999999999999999999999999988765432 223467888889999999999999998865 89999999997655
Q ss_pred cccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc
Q psy12852 792 LVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867 (1102)
Q Consensus 792 ~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~ 867 (1102)
.+..... ..+.|.+.+ ....+.++|++ |. +++.|+.||++ +.|+ .++.||+++
T Consensus 340 ~~~~~~~~~~~~~~~G~~~~------~~~~v~i~d~~-g~-----------~~~~g~~Gei~----v~g~-~~~~gY~~~ 396 (527)
T TIGR02275 340 YTRLDDPAEIIFTTQGRPMS------PDDEVRVVDDH-GN-----------PVAPGETGMLL----TRGP-YTFRGYYKA 396 (527)
T ss_pred ccCCCCccccccccCCCCCC------CCceEEEECCC-CC-----------CCCCCCceEEE----ecCC-ccchhhcCC
Confidence 4332211 122332210 12334445543 43 34677777765 5688 478899998
Q ss_pred h-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCC
Q psy12852 868 K-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD 946 (1102)
Q Consensus 868 ~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 946 (1102)
+ .+.+.|. .++||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|+++++.. .
T Consensus 397 ~~~~~~~~~------~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~-~ 469 (527)
T TIGR02275 397 PEHNAAAFD------AEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDEL-L 469 (527)
T ss_pred hhHhHhhcC------cCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcc-c
Confidence 7 4444442 267999999999999999999999999999999999999999999999999999999965543 2
Q ss_pred CceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 947 GRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 947 ~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
++...++++..+...+..+|+++++++ +|.|++|..++++++||+|++||++|++|+
T Consensus 470 ~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 470 GEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred ccEEEEEEEECCCCCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 334444444444457889999999985 999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-58 Score=549.35 Aligned_cols=466 Identities=22% Similarity=0.273 Sum_probs=378.2
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
.+.|++ +|.++|+++|+.+.+. |+||.++++++|++|.+.|+++|++|+++++++.++++++|||+++|++++|
T Consensus 5 ~~~l~~---~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 5 PNWLKQ---RAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred HHHHHH---HHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 444554 5899999999987665 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCe
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDS 639 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1102)
+++..+.+++..++++++++++++++........... ..+.++..... ..........++++
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~ 143 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----------------VKFAELMNGPK-EEAEIQEEFDLDEV 143 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----------------ccHHHHhhccc-ccCCCCCCCCCCCe
Confidence 9999999999999999999999998765543322110 01222221111 11111234567899
Q ss_pred EEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHH
Q psy12852 640 LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYF 719 (1102)
Q Consensus 640 a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~ 719 (1102)
++++|||||||.||||+++|+++...+......++++++|++++.+|++|..+ +..++.++..|+++++.+..++..++
T Consensus 144 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~l~~G~~~~~~~~~~~~~~~ 222 (483)
T PRK03640 144 ATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISG-LSILMRSVIYGMRVVLVEKFDAEKIN 222 (483)
T ss_pred EEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHH-HHHHHHHHhcCCEEEecCCCCHHHHH
Confidence 99999999999999999999999888777777789999999999999999988 66789999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC-
Q psy12852 720 RDCAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN- 797 (1102)
Q Consensus 720 ~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~- 797 (1102)
+.++++++|++.++|+++..|+..... .....++.+++||+++++.+++.+.+. + +++++.||+||++..+.....
T Consensus 223 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~-~-~~~~~~YG~tE~~~~~~~~~~~ 300 (483)
T PRK03640 223 KLLQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEK-G-IPVYQSYGMTETASQIVTLSPE 300 (483)
T ss_pred HHHHHhCCcEEEeHHHHHHHHHhCcCccccCCcceEEEEcCCCCCHHHHHHHHHh-C-CCeeeeeccCcccccccccCcc
Confidence 999999999999999999998865332 223477888999999999999988774 4 489999999998754432221
Q ss_pred ----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHH
Q psy12852 798 ----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQK 872 (1102)
Q Consensus 798 ----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~ 872 (1102)
..+++|.+. .+..+.+.|+ + ++++.|.+||++ +.|| .++.||++++ .+..
T Consensus 301 ~~~~~~~~vG~p~-------~~~~~~i~~~--~-----------~~~~~g~~Gel~----v~g~-~~~~gy~~~~~~~~~ 355 (483)
T PRK03640 301 DALTKLGSAGKPL-------FPCELKIEKD--G-----------VVVPPFEEGEIV----VKGP-NVTKGYLNREDATRE 355 (483)
T ss_pred cccccCCCccccc-------CCcEEEEecC--C-----------CcCCCCCceEEE----EECc-chhhhhcCCHHHHHH
Confidence 223444432 2333333332 1 245778888866 4588 5889999987 5555
Q ss_pred HHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEE
Q psy12852 873 KILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI 952 (1102)
Q Consensus 873 ~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~ 952 (1102)
+|. ++||+|||+|++++||.++++||+||+||++|++|+|.|||+.+.++++|.+++|++..++. .+.. .+
T Consensus 356 ~~~-------~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~-~~~~-~~ 426 (483)
T PRK03640 356 TFQ-------DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDK-WGQV-PV 426 (483)
T ss_pred HHh-------cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcc-cCCc-eE
Confidence 552 57999999999999999999999999999999999999999999999999999998855443 2333 44
Q ss_pred EEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 953 AIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 953 ~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+++..+...+.++++++++++||.|++|..|+.++++|+|++||++|++|+++.
T Consensus 427 ~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~ 480 (483)
T PRK03640 427 AFVVKSGEVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLV 480 (483)
T ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHH
Confidence 444455678899999999999999999999999999999999999999999864
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=558.06 Aligned_cols=494 Identities=21% Similarity=0.289 Sum_probs=389.2
Q ss_pred HHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
+..++.. +++++|+++|+.+.+ +|+||.++++++|+.|.+.|+++|++|++++++++++++++|||+++|+++
T Consensus 18 l~~~l~~--~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 95 (559)
T PRK08315 18 IGQLLDR--TAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAIL 95 (559)
T ss_pred HHHHHHH--HHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEE
Confidence 4444444 588999999987632 399999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchh-----HHHHHHhcC-------------CC-ceEEEecCC-CCCCCChh
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYP-----EIEAIRESI-------------PD-VKLFLLDET-KPDLPNLS 617 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~-------------~~-~~~~~~~~~-~~~~~~~~ 617 (1102)
+|++|..+.+++..+++.+++++++++..... .+......+ +. ..++..+.. ..+...+.
T Consensus 96 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (559)
T PRK08315 96 VTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFD 175 (559)
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCcccccHH
Confidence 99999999999999999999999999875421 122211111 11 122222221 11223344
Q ss_pred HhhccCCCC----CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhH
Q psy12852 618 DLMKTTPAS----EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGG 693 (1102)
Q Consensus 618 ~~~~~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~ 693 (1102)
++....... .........++++++++|||||||.||||.++|+++..++......+++.++|+++...|++|..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 255 (559)
T PRK08315 176 ELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGM 255 (559)
T ss_pred HHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHH
Confidence 333221100 0111123567889999999999999999999999999988888888999999999999999999998
Q ss_pred HHHHHhHhhcCceEEEe-CCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHH
Q psy12852 694 LIGTIPALILGSSIAIR-TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKF 770 (1102)
Q Consensus 694 ~~~i~~~l~~G~~lv~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~ 770 (1102)
+..++.++..|+++++. ..+++..+++.++++++|+++++|+++..++..... ....+++.+++||++++.++++.|
T Consensus 256 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~ 335 (559)
T PRK08315 256 VLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRV 335 (559)
T ss_pred HHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHH
Confidence 88999999999999954 458999999999999999999999999888775432 233567778899999999999999
Q ss_pred HHHhCcchhhhccccccCCcccccCCCC------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCC
Q psy12852 771 VKRFHVQTIIEFYGATEGNANLVNMDNT------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQ 844 (1102)
Q Consensus 771 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~ 844 (1102)
.+.++..+++|.||+||++.+++..... ...+|.+. .++.+.++|+++|+ +++.|+
T Consensus 336 ~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~-------~~~~v~i~d~~~~~-----------~~~~g~ 397 (559)
T PRK08315 336 IDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRAL-------PHLEVKIVDPETGE-----------TVPRGE 397 (559)
T ss_pred HHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccC-------CCcEEEEEcCccCC-----------cCCCCC
Confidence 9999876799999999998776543321 22333332 34556677776554 347788
Q ss_pred CcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHH
Q psy12852 845 PGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923 (1102)
Q Consensus 845 ~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE 923 (1102)
+||++ +.|+ .++.||++++ .+...|. .++||+|||+|++++||.++|+||.|++||++|+||+|.|||
T Consensus 398 ~GEl~----v~g~-~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE 466 (559)
T PRK08315 398 QGELC----TRGY-SVMKGYWNDPEKTAEAID------ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIE 466 (559)
T ss_pred ceEEE----EECc-hhhhhhcCChhHHhhcCC------CCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHH
Confidence 88866 4577 4778999987 4443331 268999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhh
Q psy12852 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002 (1102)
Q Consensus 924 ~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L 1002 (1102)
++|.++++|.+++|+++.++. .++...++++ ..+...+.++++++++++||.|++|..+++++++|+|++||++|.+|
T Consensus 467 ~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L 545 (559)
T PRK08315 467 EFLYTHPKIQDVQVVGVPDEK-YGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKM 545 (559)
T ss_pred HHHHhCCCceEEEEEecCCCC-CCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHH
Confidence 999999999999999865543 2333333333 33345678899999999999999999999999999999999999999
Q ss_pred hhcCCC
Q psy12852 1003 QNEGFD 1008 (1102)
Q Consensus 1003 ~~~~~~ 1008 (1102)
+++...
T Consensus 546 ~~~~~~ 551 (559)
T PRK08315 546 REMMIE 551 (559)
T ss_pred HHHHHh
Confidence 986433
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=548.06 Aligned_cols=471 Identities=21% Similarity=0.270 Sum_probs=382.4
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+.+|+++|+.+++. |+||.++++++|+.|++ .|+++|++|+++++|+++++++++||+++|++++|+++.++.+
T Consensus 11 ~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~ 90 (496)
T PRK06839 11 RAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTEN 90 (496)
T ss_pred HHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHH
Confidence 4889999999998665 99999999999999986 6999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
++..++++++++++++++...+.+..+........++.+.+ +.+....... ......++++++|+||||
T Consensus 91 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~i~~TSG 159 (496)
T PRK06839 91 ELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITS-------LKEIEDRKID----NFVEKNESASFIICYTSG 159 (496)
T ss_pred HHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecc-------hHhhhccCCC----CCCCCCCCCcEEEEeCCC
Confidence 99999999999999999877666655443332233333321 2222211111 112445689999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhccc
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~v 727 (1102)
|||.||||+++|+++..........++++.+|+++..+|++|..++...++.++..|+++++.+.+++..+++.++++++
T Consensus 160 TTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~ 239 (496)
T PRK06839 160 TTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKV 239 (496)
T ss_pred CCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCC
Confidence 99999999999999987666666777899999999999999999877778899999999999888999999999999999
Q ss_pred ccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC-----CCCC
Q psy12852 728 NAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD-----NTEG 800 (1102)
Q Consensus 728 t~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-----~~~~ 800 (1102)
|++.++|++++.++..... .....++.+++||+++++++.+.|.+. + .++++.||+||++..++... ...+
T Consensus 240 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 317 (496)
T PRK06839 240 TVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-G-FLFGQGFGMTETSPTVFMLSEEDARRKVG 317 (496)
T ss_pred eEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh-C-CeeEeeccCCCCCcceEecccccccccCC
Confidence 9999999999999876433 234567888999999999999999886 4 48999999999986554322 1223
Q ss_pred cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccC
Q psy12852 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFK 880 (1102)
Q Consensus 801 ~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~ 880 (1102)
++|.+. ....+.++|++ +. .++.|+.||++ +.|+ .++.||++++..+...+.
T Consensus 318 ~~G~p~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~~~-~~~~gy~~~~~~~~~~~~---- 369 (496)
T PRK06839 318 SIGKPV-------LFCDYELIDEN-KN-----------KVEVGEVGELL----IRGP-NVMKEYWNRPDATEETIQ---- 369 (496)
T ss_pred CCcccC-------CCceEEEECCC-cC-----------CCCCCCceEEE----EECC-CcchhhcCChHHHHHHHc----
Confidence 444432 23445555554 22 25778888876 5588 478899998755444432
Q ss_pred CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCC
Q psy12852 881 PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSN 959 (1102)
Q Consensus 881 ~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~ 959 (1102)
++||+|||+|+++++|.+++.||.||+||++|.+|+|.|||++|.++|+|.+++|++++++. .++..+++++ ..+.
T Consensus 370 --~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~-~g~~~~~~v~~~~~~ 446 (496)
T PRK06839 370 --DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVK-WGEIPIAFIVKKSSS 446 (496)
T ss_pred --CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccc-cCceEEEEEEECCCC
Confidence 57999999999999999999999999999999999999999999999999999999866544 2444444444 3334
Q ss_pred ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 960 QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 960 ~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
..+.++++++++++||.|++|..|++++++|+|++||++|++|+++.
T Consensus 447 ~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~ 493 (496)
T PRK06839 447 VLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQL 493 (496)
T ss_pred CCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHh
Confidence 56778999999999999999999999999999999999999998764
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=552.23 Aligned_cols=477 Identities=20% Similarity=0.263 Sum_probs=379.8
Q ss_pred hcccCCcccchhh---------cchHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCC
Q psy12852 492 NARSTNDAAATTV---------KNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562 (1102)
Q Consensus 492 ~a~~~P~~~Av~~---------~~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~ 562 (1102)
+++.+|+++|+.. .-+|+||.++++++|++|++.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 31 ~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 110 (538)
T TIGR03208 31 AVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMP 110 (538)
T ss_pred HHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCc
Confidence 4888999999874 1239999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCC-ceEEEecCCCCCCCChhHhhccCCCC--CC----CC
Q psy12852 563 NLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPD-VKLFLLDETKPDLPNLSDLMKTTPAS--EV----KP 630 (1102)
Q Consensus 563 ~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~ 630 (1102)
.++.+++.++++.++++++++++... .....+....+. ..++..+.. ....++..+...... .. ..
T Consensus 111 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (538)
T TIGR03208 111 IFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD--GDDSFDRVLMTPERDDTPDAAAILA 188 (538)
T ss_pred ccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC--CCcCHHHHhhccccccccccccccc
Confidence 99999999999999999999987642 222222233333 234444321 122333332211100 00 01
Q ss_pred CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe
Q psy12852 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR 710 (1102)
Q Consensus 631 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~ 710 (1102)
.....++++++++|||||||.||||+++|+++...+......++++.+|++++.+|++|..+++..++.++..|+++++.
T Consensus 189 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~ 268 (538)
T TIGR03208 189 GPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQ 268 (538)
T ss_pred cCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEec
Confidence 12456789999999999999999999999999998888888889999999999999999998888899999999999999
Q ss_pred CCCCHhHHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccC
Q psy12852 711 TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEG 788 (1102)
Q Consensus 711 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 788 (1102)
+.+++..+++.++++++|++.++|+++..+..... .....+++.+++||+++++++.++|.+.++. .++|.||+||+
T Consensus 269 ~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~-~~~~~YG~tE~ 347 (538)
T TIGR03208 269 DIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGA-LIVSAWGMTEN 347 (538)
T ss_pred CccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCC-eEEeeeccCcC
Confidence 88999999999999999999999999988875432 1234567888899999999999999998865 89999999999
Q ss_pred CcccccCCCCC-----CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 789 NANLVNMDNTE-----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 789 ~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
+.+++...... ...|.+. ..+.+.++|++ |. +++.|++||++ +.|+. ++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~G~~~-------~g~~v~i~~~~-~~-----------~~~~g~~Gel~----v~g~~-~~~g 403 (538)
T TIGR03208 348 GAVTVTEPDDALEKASTTDGRPL-------PGVEVKVIDAN-GA-----------KLSQGETGRLL----VRGCS-NFGG 403 (538)
T ss_pred CCccccCcccchhhccCcccccC-------CCCEEEEECCC-CC-----------CCcCCCCcEEE----EecCc-cccc
Confidence 87765433211 1223321 23455555544 33 34678888766 55884 7889
Q ss_pred cCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcC
Q psy12852 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVG 943 (1102)
Q Consensus 864 Y~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~ 943 (1102)
|++++..+. + .+++||+|||+|+++++|.++++||+||+||++|++|+|.|||++|.++|+|.+++|+++++.
T Consensus 404 y~~~~~~~~-~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~ 476 (538)
T TIGR03208 404 YLKRPHLNS-T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDE 476 (538)
T ss_pred ccCCccccc-c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCC
Confidence 999874332 1 247899999999999999999999999999999999999999999999999999999986544
Q ss_pred CCCCceeEEEEE-cCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 944 DLDGRAGMIAIV-DTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 944 ~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
. .++...++++ ..+...+.+++++++++ +++.|++|..+++++++|+|++||++|++|+
T Consensus 477 ~-~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 477 R-LGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred C-CCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 3 3444444443 33345778899999985 7999999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=557.24 Aligned_cols=490 Identities=19% Similarity=0.230 Sum_probs=383.6
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..+++. +++++|+++|+.+.+. |+||.+.++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 34 l~~~~~~--~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~ 111 (573)
T PRK05605 34 LVDLYDN--AVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVE 111 (573)
T ss_pred HHHHHHH--HHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence 4444444 5888999999987554 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCC----------------------------CC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET----------------------------KP 611 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~ 611 (1102)
++|.++.+++.+++++++++++|+++.....+..+........++.++.. ..
T Consensus 112 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (573)
T PRK05605 112 HNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAP 191 (573)
T ss_pred cCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccCCC
Confidence 99999999999999999999999988766555444332221122222110 01
Q ss_pred CCCChhHhhccCCCC--CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC-C-CCCcEEEEecCc
Q psy12852 612 DLPNLSDLMKTTPAS--EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-L-GSGDVIYNCLPM 687 (1102)
Q Consensus 612 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~-~~~d~~l~~~pl 687 (1102)
+...+.++....... .........++++++++|||||||.||||+++|+++..++......+. + ..+++++...|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 271 (573)
T PRK05605 192 GTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPM 271 (573)
T ss_pred cceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecCh
Confidence 112233322221111 001113456789999999999999999999999999877665443332 2 347899999999
Q ss_pred hhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHH
Q psy12852 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGD 765 (1102)
Q Consensus 688 ~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~ 765 (1102)
+|..|+...++.++..|+++++.+..++..+++.|+++++|++.++|++++.|+..... ....+++.+++||++++++
T Consensus 272 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~ 351 (573)
T PRK05605 272 FHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVS 351 (573)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHH
Confidence 99998778888899999999999889999999999999999999999999999876433 2345678888999999999
Q ss_pred HHHHHHHHhCcchhhhccccccCCcccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCC-CCCcCCCCCcccccc
Q psy12852 766 IWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVE-NQPIRDPKTGLCIRC 840 (1102)
Q Consensus 766 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~-g~~i~~~~~~~~~~~ 840 (1102)
+.++|.+.++. .+++.||+||++.+++..... .+.+|.+. ....+.++|+++ + .++
T Consensus 352 ~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~~~~-----------~~~ 412 (573)
T PRK05605 352 TVELWEKLTGG-LLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPF-------PDTEVRIVDPEDPD-----------ETM 412 (573)
T ss_pred HHHHHHHHhCC-CeecccccchhchhhhcCCcccCCcCCccccCC-------CCCEEEEEcCCCCC-----------ccC
Confidence 99999888764 899999999998776543321 23344332 234555666553 2 234
Q ss_pred cCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeech
Q psy12852 841 KYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919 (1102)
Q Consensus 841 ~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~ 919 (1102)
+.|..||++ +.|+ .++.||++++ .+.+.|. ++||+|||+|+++++|.++++||+||+||++|++|+|
T Consensus 413 ~~g~~Gel~----v~~~-~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p 480 (573)
T PRK05605 413 PDGEEGELL----VRGP-QVFKGYWNRPEETAKSFL-------DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYP 480 (573)
T ss_pred CCCCeeEEE----EecC-chhhhhcCChhHhhhccc-------CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECH
Confidence 677777766 5577 4788999886 4444442 3499999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccch
Q psy12852 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998 (1102)
Q Consensus 920 ~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKid 998 (1102)
.|||+++.+++.|.+++|+++++.. .++..+++++ ..+...+.++|+++++++|+.|++|..++++++||+|++||++
T Consensus 481 ~eIE~~l~~~~~i~~~~v~~~~~~~-~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~ 559 (573)
T PRK05605 481 AEVEEVLREHPGVEDAAVVGLPRED-GSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVR 559 (573)
T ss_pred HHHHHHHHhCcccceEEEEeeeccc-CCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCccccc
Confidence 9999999999999999999976654 3344444443 3334577899999999999999999999999999999999999
Q ss_pred hhhhhhcC
Q psy12852 999 KIQLQNEG 1006 (1102)
Q Consensus 999 r~~L~~~~ 1006 (1102)
|++|+++.
T Consensus 560 r~~L~~~~ 567 (573)
T PRK05605 560 RREVREEL 567 (573)
T ss_pred HHHHHHHH
Confidence 99998764
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=566.99 Aligned_cols=485 Identities=17% Similarity=0.202 Sum_probs=359.5
Q ss_pred hhHHHHHHHHhhcccCCcccchhh------------cchHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHH
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTV------------KNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~------------~~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~l 548 (1102)
+..+.|.+ +++++|+++|+.. .-+|+||.++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 44 t~~~~l~~---~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 120 (660)
T PLN02861 44 SPWQFFSD---AVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120 (660)
T ss_pred CHHHHHHH---HHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 33444444 5899999999852 12499999999999999999999999999999999999999999
Q ss_pred HHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCC-Cc-eEEEecCCCC-----------CCCC
Q psy12852 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DV-KLFLLDETKP-----------DLPN 615 (1102)
Q Consensus 549 A~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----------~~~~ 615 (1102)
||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ .+ .++.++.... ....
T Consensus 121 A~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
T PLN02861 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFS 200 (660)
T ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEE
Confidence 999999999999999999999999999999999998766555444333322 22 3344432110 1123
Q ss_pred hhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC-----CCCCcEEEEecCchhh
Q psy12852 616 LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-----LGSGDVIYNCLPMYHS 690 (1102)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-----~~~~d~~l~~~pl~~~ 690 (1102)
+.++....... .......++|+++|+|||||||.||||++||++++..+......++ ++++|++++++|++|.
T Consensus 201 ~~~~~~~~~~~--~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~ 278 (660)
T PLN02861 201 WEEFSLMGSLD--CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278 (660)
T ss_pred HHHHHHhCccc--CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHH
Confidence 44443322111 1113456899999999999999999999999999988766655443 4788999999999999
Q ss_pred hhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhc---------------------------
Q psy12852 691 AGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS--------------------------- 743 (1102)
Q Consensus 691 ~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~--------------------------- 743 (1102)
++... .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..|...
T Consensus 279 ~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~ 356 (660)
T PLN02861 279 YDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL 356 (660)
T ss_pred HHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 98554 455799999998874 6899999999999999999999999987641
Q ss_pred ----------cCCcc---------c-cccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CC
Q psy12852 744 ----------KESEA---------D-YSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TE 799 (1102)
Q Consensus 744 ----------~~~~~---------~-~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~ 799 (1102)
+.... . ..++.+++||+++++++ .+|.+.++...++|+||+||+++.++.... ..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~-~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~ 435 (660)
T PLN02861 357 RKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMV 435 (660)
T ss_pred hcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHH-HHHHHHHcCCCeeEecchhhhhhceeecccccCCCC
Confidence 00000 0 25677788999999987 567777775579999999999865543211 23
Q ss_pred CcccccCCCCCCcCCCeeeEEeec-CCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhc
Q psy12852 800 GAVGIIPTLLPTFLHPVAIIQFDL-VENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILEN 877 (1102)
Q Consensus 800 ~~~g~~~~~~~~~~~~~~~~~~d~-~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~ 877 (1102)
+++|.+. ....+.++|. +.|... .+.+..|| |+++|| .++.||+++| .|.+.|.
T Consensus 436 gsvG~p~-------p~~ev~i~d~~~~g~~~----------~~~~~~GE----i~vrGp-~v~~GY~~~pe~T~~~f~-- 491 (660)
T PLN02861 436 GTVGVPM-------TTIEARLESVPEMGYDA----------LSDVPRGE----ICLRGN-TLFSGYHKRQDLTEEVLI-- 491 (660)
T ss_pred CCccCcc-------CceEEEEEEccccCccc----------CCCCCcee----EEEcCC-cccccccCCHHHHHhhhh--
Confidence 4455443 2334444441 223111 12233454 557799 5899999987 5666662
Q ss_pred ccCCCCeEEEecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEc
Q psy12852 878 VFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD 956 (1102)
Q Consensus 878 ~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~ 956 (1102)
+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+ .++ .++++++
T Consensus 492 -----dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~----~~~-~~~A~vv 561 (660)
T PLN02861 492 -----DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS----FES-FLVAVVV 561 (660)
T ss_pred -----ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC----Ccc-eeEEEEE
Confidence 579999999999999999999999999997 79999999999999999999999999832 123 3445443
Q ss_pred CCCc------------cCH----------HHHHHHHHc-----cCCCCCcceEEEEecC-c-----cCCCCccchhhhhh
Q psy12852 957 TSNQ------------VDL----------KLLVQGLDA-----NLPAYARPLFVRIMKA-I-----EMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 957 ~~~~------------~~~----------~~l~~~l~~-----~Lp~~~~P~~i~~l~~-l-----P~t~~GKidr~~L~ 1003 (1102)
+... .+. ..+.+.+++ .|+.|..+..|.++++ | ++|+++|+.|+.+.
T Consensus 562 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~ 641 (660)
T PLN02861 562 PDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLL 641 (660)
T ss_pred cCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHH
Confidence 3211 111 123334432 4999999999998664 6 89999999999998
Q ss_pred hcCC
Q psy12852 1004 NEGF 1007 (1102)
Q Consensus 1004 ~~~~ 1007 (1102)
+.+.
T Consensus 642 ~~y~ 645 (660)
T PLN02861 642 KYYK 645 (660)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=550.91 Aligned_cols=481 Identities=21% Similarity=0.271 Sum_probs=377.5
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
.|+++|+++|+.+++. |+||.++++++|+.|++.|+++|++|+|+++++++++++++||+++|++++|+++..+.++
T Consensus 16 ~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 95 (528)
T PRK07470 16 AARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDE 95 (528)
T ss_pred HHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHH
Confidence 5888999999987654 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCC-ceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
+.++++++++++++++....+.........+. ..++.++... ....+.++........ .......++++++|+||||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSG 173 (528)
T PRK07470 96 VAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR-AGLDYEALVARHLGAR-VANAAVDHDDPCWFFFTSG 173 (528)
T ss_pred HHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc-ccccHHHHHhcCCCCC-CCcccCCCCCeEEEEeCCC
Confidence 99999999999999998776655554433322 2334443321 1234444433321111 1123456789999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhh-c-cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC--CCCHhHHHHHHh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKH-L-LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT--KFSASNYFRDCA 723 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~-~-~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~--~~~~~~l~~~i~ 723 (1102)
|||.||||+++|+++...+..... . .+...+|+++.++|++|..+ +..++ .++.|++.++.+ .+++..+++.|+
T Consensus 174 TTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~ 251 (528)
T PRK07470 174 TTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAG-IHQLC-QVARGAATVLLPSERFDPAEVWALVE 251 (528)
T ss_pred CCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHH-HHHHH-HHhcCceEEEecccCcCHHHHHHHHH
Confidence 999999999999999765443222 2 25678899999999999988 55554 577888887765 378999999999
Q ss_pred hcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----
Q psy12852 724 KYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---- 797 (1102)
Q Consensus 724 ~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---- 797 (1102)
++++|++.++|++++.+...+... ...+++.+++||+++++...+++.+.++. .+++.||+||++..++....
T Consensus 252 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~~~~~YG~TE~~~~~~~~~~~~~~ 330 (528)
T PRK07470 252 RHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK-VLVQYFGLGEVTGNITVLPPALHD 330 (528)
T ss_pred hcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCc-HHHHhCCCcccCCceeecchhhcc
Confidence 999999999999999998765432 33467788889999999999999888876 89999999999876543211
Q ss_pred -------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHH
Q psy12852 798 -------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKES 870 (1102)
Q Consensus 798 -------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t 870 (1102)
..+++|.+. ....+.++|++ |. +++.|+.||++ +.|+ .++.||++++..
T Consensus 331 ~~~~~~~~~~~~G~~~-------~g~~~~i~d~~-~~-----------~~~~g~~Gel~----i~~~-~~~~gy~~~~~~ 386 (528)
T PRK07470 331 AEDGPDARIGTCGFER-------TGMEVQIQDDE-GR-----------ELPPGETGEIC----VIGP-AVFAGYYNNPEA 386 (528)
T ss_pred ccccccceeeccCccc-------CCcEEEEECCC-CC-----------CCCCCCceEEE----EeCC-ccchhhcCCHHH
Confidence 112222221 23445555543 43 34677777766 5577 478899998744
Q ss_pred HHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCcee
Q psy12852 871 QKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG 950 (1102)
Q Consensus 871 ~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~ 950 (1102)
....+. ++||+|||+|++++||++++.||+||+||++|+||+|.|||++|.++++|.+++|++.+.+. .++..
T Consensus 387 ~~~~~~------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~-~~~~~ 459 (528)
T PRK07470 387 NAKAFR------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPV-WGEVG 459 (528)
T ss_pred HHhhhc------CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcc-cCcee
Confidence 333322 67999999999999999999999999999999999999999999999999999999866554 34445
Q ss_pred EEEEEc-CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 951 MIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 951 l~~~v~-~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++++. .+...+.++++++|++.||.|++|..++++++||+|+|||++|+.|+++..+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 518 (528)
T PRK07470 460 VAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEE 518 (528)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHh
Confidence 555553 3334788999999999999999999999999999999999999999876544
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=546.67 Aligned_cols=484 Identities=23% Similarity=0.293 Sum_probs=388.7
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
..+.+.+. + .+|+++|+...+ +|+||.++++++|++|++.|+++|++|+++++++.+++++++||+++|+++
T Consensus 5 l~~~~~~~---~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 5 LFDALRAA---F-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred HHHHHHHH---h-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 34445444 6 899999998633 299999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
+|+++.++.+++..+++.+++++++++......+...........++.++.... ..+.+.....+.. .......++
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~ 156 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGT--GSLLEAAAAAPDD--FETVPRGAD 156 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCc--ccHHHhhhhcCcc--cCcccCCCC
Confidence 999999999999999999999999999887766655543333222444443211 1122221111111 112345678
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhH
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~ 717 (1102)
++++|+|||||||.||||+++|+++...+......+++.++|++++..|++|..++...++.+++.|+++++.+..++..
T Consensus 157 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 236 (504)
T PRK07514 157 DLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDA 236 (504)
T ss_pred CeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHH
Confidence 99999999999999999999999999998888888899999999999999999997788999999999999999899999
Q ss_pred HHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC
Q psy12852 718 YFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795 (1102)
Q Consensus 718 l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 795 (1102)
+++.+ .++|++..+|+++..++..... ....+++.+++||+++++++.+.|.+.++. ++++.||+||++..++..
T Consensus 237 ~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~ 313 (504)
T PRK07514 237 VLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGH-AILERYGMTETNMNTSNP 313 (504)
T ss_pred HHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCC-cceeecccccccccccCC
Confidence 99999 4799999999999988776432 233567888889999999999999998875 899999999998765532
Q ss_pred CC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHH
Q psy12852 796 DN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQ 871 (1102)
Q Consensus 796 ~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~ 871 (1102)
.. .....|.+ . .++.+.++|++++.+ ++.|++||++ +.|+ .++.||++++ .+.
T Consensus 314 ~~~~~~~~~~G~~------~-~~~~v~i~d~~~~~~-----------~~~g~~Gel~----i~~~-~~~~gy~~~~~~~~ 370 (504)
T PRK07514 314 YDGERRAGTVGFP------L-PGVSLRVTDPETGAE-----------LPPGEIGMIE----VKGP-NVFKGYWRMPEKTA 370 (504)
T ss_pred ccccccCcccccC------C-CCcEEEEEECCCCCC-----------CCCCCceEEE----EecC-CccccccCCchhhh
Confidence 21 12223322 1 345666777565654 4777777766 5588 4788999886 555
Q ss_pred HHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeE
Q psy12852 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951 (1102)
Q Consensus 872 ~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l 951 (1102)
+.|.. ++||+|||+|+++++|.++++||+||+||++|++|+|.|||+++.++++|.+++|++++.+. .++..+
T Consensus 371 ~~~~~------~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~-~~~~~~ 443 (504)
T PRK07514 371 EEFRA------DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPD-FGEGVT 443 (504)
T ss_pred hhccc------CCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCC-cCceEE
Confidence 55532 57999999999999999999999999999999999999999999999999999999865543 233333
Q ss_pred EEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 952 IAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 952 ~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++++ ......+.++++++++++|+.|++|..+++++++|+|++||++|++|++++
T Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~ 499 (504)
T PRK07514 444 AVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQY 499 (504)
T ss_pred EEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHH
Confidence 3333 333446788999999999999999999999999999999999999998764
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=548.15 Aligned_cols=484 Identities=20% Similarity=0.262 Sum_probs=390.0
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
.++++|+++|+.+.+. |+||.+++.++|+.|++.|+++|++|+++++|+.++++++|||+++|++++|+++..+.++
T Consensus 9 ~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 88 (515)
T TIGR03098 9 AAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQ 88 (515)
T ss_pred HHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHH
Confidence 4788999999987654 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCC-ceEEEecCCC------CCCCChhHhhccCCCCCCCCCCCCCCCCeEE
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETK------PDLPNLSDLMKTTPASEVKPSEPLQTSDSLL 641 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 641 (1102)
+..+++.+++++++++....+.+.......+. ..++.++... .....++++....... .......+++++
T Consensus 89 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 165 (515)
T TIGR03098 89 VAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD---PPHPVIDSDMAA 165 (515)
T ss_pred HHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc---ccCCCCcCCeEE
Confidence 99999999999999988766655444433333 2344444321 1112333333221111 112345678999
Q ss_pred EEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHH
Q psy12852 642 YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRD 721 (1102)
Q Consensus 642 ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~ 721 (1102)
++|||||||.||||++||+++...+......+++..+|++++.+|++|+.+ +..++.++..|+++++.+.+++..+.+.
T Consensus 166 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 244 (515)
T TIGR03098 166 ILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGATVVLHDYLLPRDVLKA 244 (515)
T ss_pred EEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhH-HHHHHHHHHcCCEEEEcCCCCHHHHHHH
Confidence 999999999999999999999998888878888999999999999999998 6788999999999999988999999999
Q ss_pred HhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC----
Q psy12852 722 CAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD---- 796 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~---- 796 (1102)
++++++|++.++|+++..|...... ....+++.++++|+++++++.+.+.+.++...+++.||+||++..+....
T Consensus 245 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 324 (515)
T TIGR03098 245 LEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVD 324 (515)
T ss_pred HHHcCCceEecChHHHHHHHhcccCCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccccccc
Confidence 9999999999999999998765332 23446788888999999999999999997778999999999876543221
Q ss_pred CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHh
Q psy12852 797 NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKIL 875 (1102)
Q Consensus 797 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~ 875 (1102)
..++.+|.+. ..+.+.++|++ |.. ++.|+.||++ +.|+ .++.||++++ .+.+.|.
T Consensus 325 ~~~~~vG~~~-------~~~~~~i~~~~-~~~-----------~~~~~~Gel~----v~g~-~~~~gy~~~~~~~~~~~~ 380 (515)
T TIGR03098 325 RRPDSIGKAI-------PNAEVLVLRED-GSE-----------CAPGEEGELV----HRGA-LVAMGYWNDPEKTAERFR 380 (515)
T ss_pred CCCCCcceec-------CCCEEEEECCC-CCC-----------CCCCCceEEE----EcCc-hhhccccCCchhhhhhhh
Confidence 2233445442 23344444433 433 3567777655 6688 5888999986 6667776
Q ss_pred hccc-----CCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCcee
Q psy12852 876 ENVF-----KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG 950 (1102)
Q Consensus 876 ~~~~-----~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~ 950 (1102)
+++. ..+.+||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++++++. .++..
T Consensus 381 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~-~g~~~ 459 (515)
T TIGR03098 381 PLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPT-LGQAI 459 (515)
T ss_pred ccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcc-cCceE
Confidence 5432 12357999999999999999999999999999999999999999999999999999999976654 44544
Q ss_pred EEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 951 MIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 951 l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
+++++ ..+...+.++++++++++|++|++|..++++++||+|++||++|++|++
T Consensus 460 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 460 VLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 44444 3345578899999999999999999999999999999999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=563.91 Aligned_cols=483 Identities=17% Similarity=0.156 Sum_probs=362.1
Q ss_pred HHHHHHHHhhcccCCcccchhhc------------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHH
Q psy12852 483 YSRFKQEASNARSTNDAAATTVK------------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 550 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~------------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~ 550 (1102)
+..+++. +++++|+++|+++. -+|+||.++++++|++|.+. +++|++|+++++|++++++++|||
T Consensus 36 ~~~~~~~--~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~ 112 (612)
T PRK12476 36 LISLIER--NIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA 112 (612)
T ss_pred HHHHHHH--HHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence 4444443 57889999998752 23999999999999999987 999999999999999999999999
Q ss_pred HHcCceEeec-CCCCC--chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC---ceEEEecCCCCCCCChhHhhccCC
Q psy12852 551 AKLGVISALI-NTNLK--KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPDLPNLSDLMKTTP 624 (1102)
Q Consensus 551 l~aG~~~vpl-d~~~p--~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1102)
+++|++++|+ ++.++ .+++.+++++++++++|++....+.+.......+. ..++.++... ....
T Consensus 113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~ 182 (612)
T PRK12476 113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP----------DSAG 182 (612)
T ss_pred HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecccc----------cccc
Confidence 9999999999 68877 78999999999999999998776655544333321 2344433210 0000
Q ss_pred CCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC-CCCCcEEEEecCchhhhhHHHHHHhHhhc
Q psy12852 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-LGSGDVIYNCLPMYHSAGGLIGTIPALIL 703 (1102)
Q Consensus 625 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~~~~~~i~~~l~~ 703 (1102)
.........++++++|+|||||||+||||+++|+++.+++......++ +++++++++++|++|..| +..++.+++.
T Consensus 183 --~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g-~~~~~~~~~~ 259 (612)
T PRK12476 183 --ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMG-LSMIGFPAVY 259 (612)
T ss_pred --ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccc-hHHHHHHHhc
Confidence 011112346789999999999999999999999999887777666777 788999999999999998 5555556566
Q ss_pred CceEEEeCC----CCHhHHHHHHh--hcccccccccHHHHHHHHhccC------CccccccceeeeeccCCCHHHHHHHH
Q psy12852 704 GSSIAIRTK----FSASNYFRDCA--KYKCNAGIYIGEMCRYLLASKE------SEADYSHQVVKMIGVGMRGDIWAKFV 771 (1102)
Q Consensus 704 G~~lv~~~~----~~~~~l~~~i~--~~~vt~~~~~Ps~~~~l~~~~~------~~~~~~l~~~~~~Ge~l~~~~~~~~~ 771 (1102)
|+++++..+ +++..+++.++ ++++|++..+|+++..++.... .....+++ +++||+++++++.++|.
T Consensus 260 gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~ 338 (612)
T PRK12476 260 GGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFN 338 (612)
T ss_pred CCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHH
Confidence 776666553 38899999995 5899999999998887765311 11234566 78889999999999999
Q ss_pred HHhC-----cchhhhccccccCCcccccCCCCC------------------------------CcccccCCCCCCcCCCe
Q psy12852 772 KRFH-----VQTIIEFYGATEGNANLVNMDNTE------------------------------GAVGIIPTLLPTFLHPV 816 (1102)
Q Consensus 772 ~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------------~~~g~~~~~~~~~~~~~ 816 (1102)
+.|+ ...++|.||+||++..++...... .++|++ . .+.
T Consensus 339 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~------~-~g~ 411 (612)
T PRK12476 339 KAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQV------A-RSQ 411 (612)
T ss_pred HHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCc------C-CCC
Confidence 9873 235999999999886544321110 122222 1 345
Q ss_pred eeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc------------CCCC
Q psy12852 817 AIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF------------KPGD 883 (1102)
Q Consensus 817 ~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~------------~~g~ 883 (1102)
.+.++|+++|.+ +|.|++||++ ++|+ .++.||++++ .|.++|...+. .+++
T Consensus 412 ~v~ivd~~~g~~-----------~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~ 475 (612)
T PRK12476 412 WAVIVDPDTGAE-----------LPDGEVGEIW----LHGD-NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDG 475 (612)
T ss_pred EEEEEeCCCCcC-----------CCCCCEEEEE----EcCC-cccccccCChHHHHHHHhhhhccccccccccccccCCC
Confidence 566777665543 4677777755 5688 5889999986 67777753210 1235
Q ss_pred eEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHh-cCCcce--eEEEEEEcCCCCCceeEEEEEcCCC-
Q psy12852 884 KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK-YLPYTE--FTVYGVKVGDLDGRAGMIAIVDTSN- 959 (1102)
Q Consensus 884 ~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~-~~~V~~--a~vv~~~~~~~~~~~~l~~~v~~~~- 959 (1102)
+||+|||+|+++ ||+|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ++|+++ ++..++...++++....
T Consensus 476 ~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~--~~~~~~~~~~~v~~~~~~ 552 (612)
T PRK12476 476 TWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTV--PAEDNERLVIVAERAAGT 552 (612)
T ss_pred CeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEe--cCCCcceEEEEEEecCCc
Confidence 799999999985 99999999999999999999999999999985 899999 555554 44334444443332222
Q ss_pred -ccCHHHHHHHHHccCC-CCCc-ceEEEEec--CccCCCCccchhhhhhhcCCC
Q psy12852 960 -QVDLKLLVQGLDANLP-AYAR-PLFVRIMK--AIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 960 -~~~~~~l~~~l~~~Lp-~~~~-P~~i~~l~--~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
..+.++|.++++++|+ .|++ |..+++++ +||+|++|||||++|+++..+
T Consensus 553 ~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 553 SRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred ccccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 3577889999999888 4888 68888886 599999999999999987543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-57 Score=545.02 Aligned_cols=473 Identities=22% Similarity=0.269 Sum_probs=380.2
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+++++|+++|+.+.+. |.||.+++.++|.+|.+.|+++|++|++++++++++++++|||+++|++++|+++.++.++
T Consensus 11 ~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 90 (497)
T PRK06145 11 HARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADE 90 (497)
T ss_pred HHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHH
Confidence 4888999999987665 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.++++++++++++++.+....... . ...+.++.... .....+..... .........++++++++|||||
T Consensus 91 ~~~~l~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGT 160 (497)
T PRK06145 91 VAYILGDAGAKLLLVDEEFDAIVAL-----E-TPKIVIDAAAQ--ADSRRLAQGGL--EIPPQAAVAPTDLVRLMYTSGT 160 (497)
T ss_pred HHHHHHhcCCcEEEEccchhhhhhc-----c-cceEEecCccc--chhHHHhccCC--CCCCCCCCCccceEEEEeCCCC
Confidence 9999999999999998765432210 1 12222222110 01111111100 1111134567899999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt 728 (1102)
||.||||+++|+++..........++++.+++++...|++|..++....+.++..|+++++.+.+++..+++.++++++|
T Consensus 161 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t 240 (497)
T PRK06145 161 TDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLT 240 (497)
T ss_pred CCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCe
Confidence 99999999999999877766677788999999999999999988767778889999999999889999999999999999
Q ss_pred cccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC-----CCCc
Q psy12852 729 AGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN-----TEGA 801 (1102)
Q Consensus 729 ~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-----~~~~ 801 (1102)
++.++|++++.++...... ....++.+++||++++.++++.|.+.++...+++.||+||++..++.... ..++
T Consensus 241 ~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 320 (497)
T PRK06145 241 CAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGS 320 (497)
T ss_pred EEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCC
Confidence 9999999999998764432 23467788889999999999999999987789999999999976553321 1223
Q ss_pred ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccC
Q psy12852 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFK 880 (1102)
Q Consensus 802 ~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~ 880 (1102)
.|.+. .++.+.++|++ +. .++.|+.||++ +.|+ .++.||++++ .+.+.|.
T Consensus 321 ~G~~~-------~~~~~~i~~~~-~~-----------~~~~~~~Gel~----v~g~-~~~~Gy~~~~~~~~~~~~----- 371 (497)
T PRK06145 321 TGRAL-------AHVEIRIADGA-GR-----------WLPPNMKGEIC----MRGP-KVTKGYWKDPEKTAEAFY----- 371 (497)
T ss_pred cccCC-------CCceEEEECCC-CC-----------CCCCCCceEEE----EECc-chhhhhcCChHHHHHHHh-----
Confidence 33332 33455555543 33 34667777766 5588 4789999886 5666664
Q ss_pred CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCC
Q psy12852 881 PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSN 959 (1102)
Q Consensus 881 ~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~ 959 (1102)
++||+|||+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++..++. .++..+++++ ....
T Consensus 372 --~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~ 448 (497)
T PRK06145 372 --GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDR-WGERITAVVVLNPGA 448 (497)
T ss_pred --CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCc-cCceEEEEEEECCCC
Confidence 57999999999999999999999999999999999999999999999999999999855543 3343444443 2334
Q ss_pred ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 960 QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 960 ~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
..+.++++++++++|++|++|..++++++||+|++||++|++|+++.
T Consensus 449 ~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~ 495 (497)
T PRK06145 449 TLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDEL 495 (497)
T ss_pred CCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHh
Confidence 56788999999999999999999999999999999999999998753
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=556.73 Aligned_cols=466 Identities=15% Similarity=0.129 Sum_probs=348.4
Q ss_pred hcccCCcccchhhcc-------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCC-
Q psy12852 492 NARSTNDAAATTVKN-------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTN- 563 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~-------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~- 563 (1102)
+++++|+++|+.+.+ +|+||.++++++|+.|.+. ++|++|+|+++|++++++++|||+++|+++++ ++.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~~-~~~~ 87 (525)
T PRK05851 11 AMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVSI-LPGP 87 (525)
T ss_pred HhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCcC-CCCC
Confidence 588899999999876 3999999999999999998 89999999999999999999999999998754 432
Q ss_pred -------CCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCC
Q psy12852 564 -------LKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQT 636 (1102)
Q Consensus 564 -------~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1102)
...+++.+++++++++++|++......+...... + .+.+ +...... ..... .....+
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~---~~~~-------~~~~~~~-~~~~~--~~~~~~ 151 (525)
T PRK05851 88 VRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS---V---TVHD-------LATAAHT-NRSAS--LTPPDS 151 (525)
T ss_pred CCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc---c---cccc-------ccccccc-ccccc--CCCCCC
Confidence 2234566788999999999987655444332111 1 1110 0000000 00000 123467
Q ss_pred CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCC-CCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC--C
Q psy12852 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG-SGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK--F 713 (1102)
Q Consensus 637 ~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~--~ 713 (1102)
++++||+|||||||.||||+++|+++.+++.+....++++ ++|++++++|++|+++ +..++.+++.|+++++.+. +
T Consensus 152 ~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g-~~~~~~~l~~G~~~~~~~~~~~ 230 (525)
T PRK05851 152 GGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMG-LAFLLTAALAGAPLWLAPTTAF 230 (525)
T ss_pred CCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCcc-HHHHHHHHHcCCeEEEcCHHHH
Confidence 8999999999999999999999999999998888889998 9999999999999998 5788999999999999873 3
Q ss_pred --CHhHHHHHHhhcccccccccHHHHHHHHhccC---CccccccceeeeeccCCCHHHHHHHHHHh---C--cchhhhcc
Q psy12852 714 --SASNYFRDCAKYKCNAGIYIGEMCRYLLASKE---SEADYSHQVVKMIGVGMRGDIWAKFVKRF---H--VQTIIEFY 783 (1102)
Q Consensus 714 --~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~---~--~~~l~n~Y 783 (1102)
++..+++.+.++++|++..+|.++..+..... .....+++.+++||+++++++.++|.+.+ + ..+++|.|
T Consensus 231 ~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y 310 (525)
T PRK05851 231 SASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSY 310 (525)
T ss_pred HHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhccccc
Confidence 67889999999999988665555555533221 12235678889999999999999998753 2 23699999
Q ss_pred ccccCCcccccCCCCC----------C--cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEE
Q psy12852 784 GATEGNANLVNMDNTE----------G--AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851 (1102)
Q Consensus 784 G~TE~~~~~~~~~~~~----------~--~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~ge 851 (1102)
|+||++..++...... . ......+.+.+. .+..+.++|++.+. +++.|++||++
T Consensus 311 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~-~g~~v~i~d~~~~~-----------~~~~g~~GEl~-- 376 (525)
T PRK05851 311 GLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPI-PGMEVRISPGDGAA-----------GVAGREIGEIE-- 376 (525)
T ss_pred chhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCC-CCcEEEEECCCCCc-----------cCCCCCeEEEE--
Confidence 9999987654321100 0 000111111111 33455556655322 24667777655
Q ss_pred EeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCC
Q psy12852 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931 (1102)
Q Consensus 852 i~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~ 931 (1102)
++|+ .++.||++++.. ..++||+|||+|+++ +|.|+|+||+||+||++|+||+|.|||++|.+||+
T Consensus 377 --v~g~-~~~~GY~~~~~~----------~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~ 442 (525)
T PRK05851 377 --IRGA-SMMSGYLGQAPI----------DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRG 442 (525)
T ss_pred --EecC-chhhccccCCcc----------CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCC
Confidence 5688 489999998631 126799999999997 79999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCC--CcceEEEEec--CccCCCCccchhhhhhhcC
Q psy12852 932 YTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAY--ARPLFVRIMK--AIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 932 V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~--~~P~~i~~l~--~lP~t~~GKidr~~L~~~~ 1006 (1102)
|.+++|++++++.. ++...++++......+.++++++++++|+.| |+|..+++++ +||+|+||||||++|++..
T Consensus 443 V~~~~vv~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~ 520 (525)
T PRK05851 443 VREGAVVAVGTGEG-SARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSL 520 (525)
T ss_pred cccceEEEEEecCC-CCceeEEEEEEecCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHH
Confidence 99999999776553 3322222222212345677888888888887 9999999999 8999999999999998754
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-57 Score=550.94 Aligned_cols=493 Identities=19% Similarity=0.277 Sum_probs=386.3
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+....|.. .++++|+++|++..+ +|+||.++++++|++|.+.|+++|++|++++++++++++++|||+++|+
T Consensus 19 ~l~~~l~~---~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~ 95 (558)
T PRK12583 19 TIGDAFDA---TVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95 (558)
T ss_pred cHHHHHHH---HHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCC
Confidence 34444444 488999999987632 3999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhc-------------CCCc-eEEEecCCC-CCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRES-------------IPDV-KLFLLDETK-PDLPN 615 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~~~~-~~~~~~~~~-~~~~~ 615 (1102)
+++|+++.++.+++.+++++++++++|+++... ..+...... .+.. .++..+... .....
T Consensus 96 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (558)
T PRK12583 96 ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLA 175 (558)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccc
Confidence 999999999999999999999999999976432 112221111 1111 122222111 12222
Q ss_pred hhHhhccCCCC----CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhh
Q psy12852 616 LSDLMKTTPAS----EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSA 691 (1102)
Q Consensus 616 ~~~~~~~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 691 (1102)
+++........ .........++++++++|||||||.||||.++|+++.+++......+++.++|+++...|++|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 255 (558)
T PRK12583 176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255 (558)
T ss_pred hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 33222211110 00011234578899999999999999999999999999888888888999999999999999999
Q ss_pred hHHHHHHhHhhcCceEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHH
Q psy12852 692 GGLIGTIPALILGSSIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWA 768 (1102)
Q Consensus 692 ~~~~~i~~~l~~G~~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~ 768 (1102)
|.+..++.++..|+++++.. .+++..+++.++++++|++.++|+++..++...... ...+++.+++||+++++++.+
T Consensus 256 g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~ 335 (558)
T PRK12583 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMR 335 (558)
T ss_pred hHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHH
Confidence 98899999999999999765 488999999999999999999999998887654332 235678889999999999999
Q ss_pred HHHHHhCcchhhhccccccCCcccccCCC------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC
Q psy12852 769 KFVKRFHVQTIIEFYGATEGNANLVNMDN------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842 (1102)
Q Consensus 769 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~ 842 (1102)
++.+.++...+++.||+||++.+++.... ...++|.+. ....+.++|++ +. +++.
T Consensus 336 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~-------~~~~~~i~d~~-~~-----------~~~~ 396 (558)
T PRK12583 336 RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQ-------PHLEVKVVDPD-GA-----------TVPR 396 (558)
T ss_pred HHHHHcCCcceeccccccccccceeccCcccccccccCCCCccC-------CCCeEEEECCC-CC-----------CCCC
Confidence 99999987689999999999987654322 122333332 24455566655 43 3477
Q ss_pred CCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHH
Q psy12852 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922 (1102)
Q Consensus 843 g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eI 922 (1102)
|+.||++ +.|+ .++.||++++....+.+. .++||+|||+|++++||.+++.||+||+||++|.+|+|.||
T Consensus 397 g~~Gel~----v~g~-~~~~gy~~~~~~~~~~~~-----~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~I 466 (558)
T PRK12583 397 GEIGELC----TRGY-SVMKGYWNNPEATAESID-----EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREI 466 (558)
T ss_pred CCeeEEE----EEeC-ccchhhcCChHHHHhhcC-----CCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHH
Confidence 7777766 4577 478899998754433321 26899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhh
Q psy12852 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001 (1102)
Q Consensus 923 E~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~ 1001 (1102)
|++|.++|+|.+++|+++++.. .++..+++++ .++...+..+++++++++||.|++|..+++++++|+|++||++|++
T Consensus 467 E~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~ 545 (558)
T PRK12583 467 EEFLFTHPAVADVQVFGVPDEK-YGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFR 545 (558)
T ss_pred HHHHHhCCCeeEEEEEeeecCC-CCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHH
Confidence 9999999999999999976654 3344444443 3334567889999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy12852 1002 LQNEG 1006 (1102)
Q Consensus 1002 L~~~~ 1006 (1102)
|+++.
T Consensus 546 L~~~~ 550 (558)
T PRK12583 546 MREIS 550 (558)
T ss_pred HHHHH
Confidence 99874
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=545.90 Aligned_cols=488 Identities=23% Similarity=0.311 Sum_probs=397.6
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
..+.|.. +++.+|+++|+.+.+. |+||.+.++++|+.|.+.|+++|++|+++++++.++++++|||+++|++++
T Consensus 8 l~~~l~~---~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v 84 (521)
T PRK06187 8 IGRILRH---GARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLH 84 (521)
T ss_pred HHHHHHH---HHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 3444444 5999999999998775 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCC-----CCCCChhHhhccCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETK-----PDLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
|+++.++.+++..+++.+++++++++....+.+..+....+.. +++..++.. .....+.++......... ..
T Consensus 85 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 162 (521)
T PRK06187 85 PINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFD--FP 162 (521)
T ss_pred ecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCC--CC
Confidence 9999999999999999999999999998888777776666543 344443322 223444444443322221 23
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK 712 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~ 712 (1102)
...++++++++|||||||.||+|.++|+++.+........++++++|++++.+|++|..+ +...+.++..|+++++.+.
T Consensus 163 ~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~l~~G~~~v~~~~ 241 (521)
T PRK06187 163 DIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHA-WGLPYLALMAGAKQVIPRR 241 (521)
T ss_pred CCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhh-HHHHHHHHHhCCEEEecCC
Confidence 556789999999999999999999999999998888888999999999999999999988 5555559999999999998
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
.++..+++.++++++|.++++|++++.|...... .....++.+++|||+++.++.+.|.+.++ +++++.||+||++.
T Consensus 242 ~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~ 320 (521)
T PRK06187 242 FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFG-IDLVQGYGMTETSP 320 (521)
T ss_pred CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhC-cchheeeccCccCc
Confidence 8999999999999999999999999999876543 33457788899999999999999999884 59999999999987
Q ss_pred ccccCCCCC---------CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC--CCCcceEEEEeecCCcc
Q psy12852 791 NLVNMDNTE---------GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY--NQPGMIIGEIKQSDPSR 859 (1102)
Q Consensus 791 ~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~--g~~Gel~gei~~~G~~~ 859 (1102)
+.+...... ...|.+. ....+.++|++ +.+ ++. |..||++ +.|+ .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~~~~-~~~-----------~~~~~g~~Gel~----v~~~-~ 376 (521)
T PRK06187 321 VVSVLPPEDQLPGQWTKRRSAGRPL-------PGVEARIVDDD-GDE-----------LPPDGGEVGEII----VRGP-W 376 (521)
T ss_pred ccccCCcccccccccccCCcccccc-------CCeEEEEECCC-CCC-----------CCCCCCCeeEEE----EECc-c
Confidence 665443222 2233321 34455566654 333 355 7777766 5577 4
Q ss_pred cccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEE
Q psy12852 860 HFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVY 938 (1102)
Q Consensus 860 ~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv 938 (1102)
++.||++++. +.+.|. ++||+|||+|+++++|.+++.||.||+||++|.+|+|.+||+.|.++++|.+++|+
T Consensus 377 ~~~~y~~~~~~~~~~~~-------~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 449 (521)
T PRK06187 377 LMQGYWNRPEATAETID-------GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVI 449 (521)
T ss_pred hhhhhcCCHHHHHHHhh-------CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEE
Confidence 7889998874 444442 45999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 939 GVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 939 ~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++.+. .++..+++++ ..+...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 450 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 450 GVPDEK-WGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred eccCCC-cCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 865443 2333333333 34445788999999999999999999999999999999999999999987543
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-57 Score=547.46 Aligned_cols=490 Identities=21% Similarity=0.287 Sum_probs=390.9
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
.+.+.. +|..+|+++|+.+.+. |.||.+.++++|++|.+.|+++|++|+|+++++++++++++||+++|++++|
T Consensus 20 ~~~~~~---~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vp 96 (542)
T PRK07786 20 VNQLAR---HALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVP 96 (542)
T ss_pred HHHHHH---HHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEE
Confidence 344444 4888999999988654 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCce-EEEecCC-CCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLDET-KPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
+++..+.+++.++++++++++++++....+.+.......+... ++..++. ......+.++........ .......+
T Consensus 97 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 174 (542)
T PRK07786 97 VNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAH--APVDIPND 174 (542)
T ss_pred cCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCCCC--CCCCCCCC
Confidence 9999999999999999999999999887766655544334333 3333221 122344555543322221 11345567
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCC-CCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC--CCC
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSL-GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT--KFS 714 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~--~~~ 714 (1102)
++++++|||||||.||||+++|+++...+......+++ ..+++++...|++|.+| +..++.++..|+++++.+ .++
T Consensus 175 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g-~~~~~~~l~~G~~~v~~~~~~~~ 253 (542)
T PRK07786 175 SPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAG-IGSMLPGLLLGAPTVIYPLGAFD 253 (542)
T ss_pred CeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHH-HHHHHHHHHccCEEEEccCCCcC
Confidence 89999999999999999999999999888777777777 67889999999999888 688999999999999965 479
Q ss_pred HhHHHHHHhhcccccccccHHHHHHHHhccCCcc-ccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccc
Q psy12852 715 ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA-DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793 (1102)
Q Consensus 715 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 793 (1102)
+..+++.|+++++|.++++|+++..|+....... ...++.++.||+++++++++.+.+.+++..+++.||+||++.+++
T Consensus 254 ~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~ 333 (542)
T PRK07786 254 PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTC 333 (542)
T ss_pred HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceE
Confidence 9999999999999999999999999987644322 225677788999999999999999998779999999999987655
Q ss_pred cCCC-----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch
Q psy12852 794 NMDN-----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868 (1102)
Q Consensus 794 ~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~ 868 (1102)
.... ....+|.+. ....+.++|++ +. .++.|+.||++ +.|+ .++.||++++
T Consensus 334 ~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~g~-~~~~gy~~~~ 389 (542)
T PRK07786 334 MLLGEDAIRKLGSVGKVI-------PTVAARVVDEN-MN-----------DVPVGEVGEIV----YRAP-TLMSGYWNNP 389 (542)
T ss_pred ecCcccccccCCCccccC-------CCceEEEECCC-CC-----------CCcCCCceEEE----EECh-hhhhhhcCCH
Confidence 3322 123334332 23444455543 33 34677777766 4588 4789999987
Q ss_pred H-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCC
Q psy12852 869 E-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947 (1102)
Q Consensus 869 ~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~ 947 (1102)
. +...| . ++||+|||+|+++++|.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+... .+
T Consensus 390 ~~~~~~f-~------~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~-~~ 461 (542)
T PRK07786 390 EATAEAF-A------GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEK-WG 461 (542)
T ss_pred HHHHHHh-h------CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcc-cC
Confidence 4 44444 2 57999999999999999999999999999999999999999999999999999999855443 23
Q ss_pred ceeEEEEEcCC--CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCC
Q psy12852 948 RAGMIAIVDTS--NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPS 1010 (1102)
Q Consensus 948 ~~~l~~~v~~~--~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~ 1010 (1102)
+..+++++... .....+++++++++++|.|++|..++++++||+|++||++|++|++......
T Consensus 462 ~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 462 EVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACV 526 (542)
T ss_pred ceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhh
Confidence 44444444222 2356789999999999999999999999999999999999999998876544
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=544.92 Aligned_cols=485 Identities=16% Similarity=0.203 Sum_probs=382.0
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..+++. +|+ |+++|+++.+. |+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++++
T Consensus 27 ~~~~~~~--~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~ 102 (536)
T PRK10946 27 LTDILTR--HAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVN 102 (536)
T ss_pred HHHHHHH--hhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEec
Confidence 4444444 354 99999998664 9999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPL 634 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1102)
+++..+..++..++++++++++++++... .....+....+....+..... .....+........... .....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~ 179 (536)
T PRK10946 103 ALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND-DGEHSLDDAINHPAEDF--TATPS 179 (536)
T ss_pred CCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC-CCCccHHHHhhCccccc--ccCCC
Confidence 77777788899999999999999986532 122333333444444443321 12233444443322211 12345
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH-HHHhHhhcCceEEEeCCC
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI-GTIPALILGSSIAIRTKF 713 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~i~~~l~~G~~lv~~~~~ 713 (1102)
.++++++++|||||||.||||+++|+++..++......++++++|++++.+|++|..+... .++.++..|+++++.+.+
T Consensus 180 ~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~ 259 (536)
T PRK10946 180 PADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDP 259 (536)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCC
Confidence 6789999999999999999999999999999988888899999999999999999887433 678899999999999889
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhcc----CCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
++..+++.++++++|++.++|+++..++... ......+++.+++||+++++++.++|.+.++. ++++.||+||++
T Consensus 260 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~-~~~~~YG~tE~~ 338 (536)
T PRK10946 260 SATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGC-QLQQVFGMAEGL 338 (536)
T ss_pred CHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCC-eEEEeecccccc
Confidence 9999999999999999999999999987652 12234567888999999999999999988865 899999999977
Q ss_pred cccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 790 ANLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 790 ~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
+..+..... ..++|.+. . ....+.++|++ |+ +++.|+.||++ +.|+ .++.||+
T Consensus 339 ~~~~~~~~~~~~~~~~~G~p~-----~-~~~~v~i~d~~-~~-----------~~~~g~~Gel~----v~g~-~~~~GY~ 395 (536)
T PRK10946 339 VNYTRLDDSDERIFTTQGRPM-----S-PDDEVWVADAD-GN-----------PLPQGEVGRLM----TRGP-YTFRGYY 395 (536)
T ss_pred eeeecCCCccccccccCCccc-----C-CCceEEEECCC-CC-----------CCCCCCccEEE----EecC-ccchhhc
Confidence 554432211 12223221 0 12344445533 43 34778888866 5588 5889999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
+++ .+.+.|. .++||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++++...
T Consensus 396 ~~~~~t~~~~~------~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~ 469 (536)
T PRK10946 396 KSPQHNASAFD------ANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDEL 469 (536)
T ss_pred CCcccchhhcc------cCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcc
Confidence 986 5555553 268999999999999999999999999999999999999999999999999999999855443
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
.++. +++++......+.+++++++++. ||+||+|..+++++++|+|++||++|++|+++.
T Consensus 470 -~g~~-~~a~vv~~~~~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~ 530 (536)
T PRK10946 470 -MGEK-SCAFLVVKEPLKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWL 530 (536)
T ss_pred -cCce-EEEEEEeCCCCCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHH
Confidence 2343 44444333448889999999986 999999999999999999999999999998764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=540.43 Aligned_cols=487 Identities=22% Similarity=0.324 Sum_probs=377.8
Q ss_pred HHHHHHHHhhcccCCcccchhhcc--------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN--------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~--------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
+..++.. +|+++|+++|+.+.+ +|+||.++++++|+.|.+.|+++|++|+|+++|+.++++++|||+++|
T Consensus 9 l~~~~~~--~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G 86 (517)
T PRK08008 9 LRQMWDD--LADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86 (517)
T ss_pred HHHHHHH--HHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 4455544 588999999988643 399999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCC-Cc-eEEEecCCC---CCCCChhHhhccCCCCCCC
Q psy12852 555 VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DV-KLFLLDETK---PDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 555 ~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 629 (1102)
++++|++|.++.+++.++++++++++++++....+.+.++..... .. .++..+... .....+.+......... .
T Consensus 87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (517)
T PRK08008 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATL-C 165 (517)
T ss_pred eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCccc-c
Confidence 999999999999999999999999999999887776666543321 12 233332211 12233433332222111 1
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
......++++++++|||||||.||||+++|+++............+..+++++..+|++|..+....++.++..|+++++
T Consensus 166 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 245 (517)
T PRK08008 166 YAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVL 245 (517)
T ss_pred ccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEE
Confidence 11345678999999999999999999999999986544333444678899999999999998878889999999999999
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcc--ccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA--DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 787 (1102)
.+++++..+++.++++++|++.++|++++.++..+.... ...++.+.+ |.+++.+....|.+.++. ++++.||+||
T Consensus 246 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~YG~tE 323 (517)
T PRK08008 246 LEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMF-YLNLSDQEKDAFEERFGV-RLLTSYGMTE 323 (517)
T ss_pred ccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEE-ecCCCHHHHHHHHHHhCC-eEEeeccccc
Confidence 999999999999999999999999999998876543321 123444443 568899999999988865 8999999999
Q ss_pred CCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 788 GNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 788 ~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
++..++.... ...++|.+. ..+...++|++ |. +++.|+.||++.+. ..|+ .++.|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~G~~~-------~g~~~~i~d~~-~~-----------~~~~g~~Gel~v~g-~~~~-~~~~g 382 (517)
T PRK08008 324 TIVGIIGDRPGDKRRWPSIGRPG-------FCYEAEIRDDH-NR-----------PLPAGEIGEICIKG-VPGK-TIFKE 382 (517)
T ss_pred cccccccCCccccccCCccccCC-------CCcEEEEECCC-CC-----------CCCCCCcceEEEeC-CCCc-chhhh
Confidence 9865543321 112233321 23444455543 43 34778888877441 1124 48889
Q ss_pred cCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEc
Q psy12852 864 YADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942 (1102)
Q Consensus 864 Y~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~ 942 (1102)
|++++. +.+.|. .++||+|||+|++++||.++++||.||+||++|++|+|.|||+++.+++.|.+++|+++++
T Consensus 383 y~~~~~~~~~~~~------~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~ 456 (517)
T PRK08008 383 YYLDPKATAKVLE------ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKD 456 (517)
T ss_pred HhCChHHHhhccc------CCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCC
Confidence 999874 444443 2679999999999999999999999999999999999999999999999999999999655
Q ss_pred CCCCCceeEEEEE--cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 943 GDLDGRAGMIAIV--DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 943 ~~~~~~~~l~~~v--~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
+. ....+.+++ ..+...+.++++++++++||.|++|..+++++++|+|++||++|+.|+
T Consensus 457 ~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 457 SI--RDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CC--CCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 53 223344444 333456778999999999999999999999999999999999999874
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=542.70 Aligned_cols=490 Identities=23% Similarity=0.256 Sum_probs=391.9
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..++.. +++++|+++|+.+.+. |+||.+++.++|..|.+.|+++|++|+++++++.+++++++||+++|++++|
T Consensus 13 l~~~l~~--~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~ 90 (523)
T PRK08316 13 IGDILRR--SARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVP 90 (523)
T ss_pred HHHHHHH--HHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 4444443 5889999999987665 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEec-----CCCCCCCChhHhhccCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLD-----ETKPDLPNLSDLMKTTPASEVKPSEPL 634 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1102)
+++..+.+++..+++.+++++++++......+...........+.... ........+.+......... .....
T Consensus 91 l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 168 (523)
T PRK08316 91 VNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAE--PDVEL 168 (523)
T ss_pred cccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCcc--CccCC
Confidence 999999999999999999999999988777666544332211111100 01122333444333222211 22456
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCC
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFS 714 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~ 714 (1102)
..+++++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|..++...++.++..|+++++.+..+
T Consensus 169 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~ 248 (523)
T PRK08316 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPD 248 (523)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCC
Confidence 77899999999999999999999999999888877888899999999999999999986666777899999999998889
Q ss_pred HhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccc
Q psy12852 715 ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792 (1102)
Q Consensus 715 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 792 (1102)
+..+++.++++++|++.++|+++..|+...... ....++.+++||+.++.++.+.+.+.+++..+++.||+||++.++
T Consensus 249 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 328 (523)
T PRK08316 249 PELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLA 328 (523)
T ss_pred HHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccc
Confidence 999999999999999999999999998765432 234677788999999999999999998777999999999998776
Q ss_pred ccCCC-----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc
Q psy12852 793 VNMDN-----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867 (1102)
Q Consensus 793 ~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~ 867 (1102)
+.... ..+++|.+. ....+.++|++ |. +++.|+.||++ +.|+ .++.||+++
T Consensus 329 ~~~~~~~~~~~~~~~G~~~-------~~~~~~i~~~~-~~-----------~~~~g~~Gei~----v~~~-~~~~~y~~~ 384 (523)
T PRK08316 329 TVLGPEEHLRRPGSAGRPV-------LNVETRVVDDD-GN-----------DVAPGEVGEIV----HRSP-QLMLGYWDD 384 (523)
T ss_pred cccCccccccccCCcccCC-------CCcEEEEEcCC-CC-----------CCCCCCcceEE----EECC-chhhhhcCC
Confidence 54322 123334332 23344445533 43 34667778766 5577 478899988
Q ss_pred h-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCC
Q psy12852 868 K-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD 946 (1102)
Q Consensus 868 ~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 946 (1102)
+ .+.+.|. ++||+|||+|++++||.++++||+||+||++|.+|+|.+||+.|.++++|.+++|++++.+..
T Consensus 385 ~~~~~~~~~-------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~- 456 (523)
T PRK08316 385 PEKTAEAFR-------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKW- 456 (523)
T ss_pred HHHHHHHhh-------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCccc-
Confidence 6 4555442 689999999999999999999999999999999999999999999999999999998665542
Q ss_pred CceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 947 GRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 947 ~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++...++++ ..+...+.++++++++++|+.|++|..+++++++|+|++||++|++|++.+..
T Consensus 457 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 457 IEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred CCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHh
Confidence 333333333 33334678899999999999999999999999999999999999999987643
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=549.48 Aligned_cols=496 Identities=18% Similarity=0.228 Sum_probs=382.5
Q ss_pred HHHHHHHHhhcccCCcccchhhcc------hHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN------LEAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~------~Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+..++.. .|..+|+++|+.+.. +|+||.++++++|++|.+ .|+++|++|+++++|+.+++++++||+++|+
T Consensus 12 ~~~~l~~--~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~ 89 (576)
T PRK05620 12 LTRILEY--GSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA 89 (576)
T ss_pred HHHHHHH--HHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence 3444444 488999999987642 399999999999999986 7999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCce-EEEecCCC-----------CCCCChhHhhccC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLDETK-----------PDLPNLSDLMKTT 623 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~ 623 (1102)
+++|++|.++.+++.++++.++++++|++......+.......+..+ ++.++... .....+.++....
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (576)
T PRK05620 90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR 169 (576)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence 99999999999999999999999999999887777766655554433 33333211 1122344444322
Q ss_pred CCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhh--hhccCCCCCcEEEEecCchhhhhHHHHHHhHh
Q psy12852 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG--KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPAL 701 (1102)
Q Consensus 624 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l 701 (1102)
... .......++++++++|||||||.||||+++|+++....... ...+++..++++++.+|++|..+ +..++.++
T Consensus 170 ~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g-~~~~~~~l 246 (576)
T PRK05620 170 STV--YDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLS-WGVPLAAF 246 (576)
T ss_pred CCc--CCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhh-hHHHHHHH
Confidence 211 11134567899999999999999999999999986544432 34578899999999999999998 66778899
Q ss_pred hcCceEEEeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcch
Q psy12852 702 ILGSSIAIRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT 778 (1102)
Q Consensus 702 ~~G~~lv~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~ 778 (1102)
..|+++++.+. +++..+++.|+++++|+++.+|+++..++.... .....+++.+++||+++++.+.++|.+.++. +
T Consensus 247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~-~ 325 (576)
T PRK05620 247 MSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGV-D 325 (576)
T ss_pred hcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhCC-c
Confidence 99999998764 789999999999999999999999988775422 1222467888889999999999999988865 8
Q ss_pred hhhccccccCCcccccCCCCC-----------CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcc
Q psy12852 779 IIEFYGATEGNANLVNMDNTE-----------GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847 (1102)
Q Consensus 779 l~n~YG~TE~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Ge 847 (1102)
+++.||+||++..++...... ...|++. ..+.+.++|+ |..+ +.+.|..||
T Consensus 326 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~~~--g~~~---------~~~~~~~Ge 387 (576)
T PRK05620 326 VVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFP-------ASLEYRIVND--GQVM---------ESTDRNEGE 387 (576)
T ss_pred eeeeccccccccceeeeccCCccccccccccccccCCcC-------CceeEEEecC--Cccc---------cCCCCCceE
Confidence 999999999987654322111 1122221 2333344443 3322 112344555
Q ss_pred eEEEEeecCCcccccccCCch-HH----HHHHhhcccC------CCCeEEEecceeEEecCccEEEEccCCCeEEeCcee
Q psy12852 848 IIGEIKQSDPSRHFYGYADKK-ES----QKKILENVFK------PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916 (1102)
Q Consensus 848 l~gei~~~G~~~~~~gY~~~~-~t----~~~f~~~~~~------~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~r 916 (1102)
+++.|+ .++.||++++ .+ ...|..+++. ..++||+|||+|++++||.++|+||.||+||++|.+
T Consensus 388 ----l~v~g~-~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~ 462 (576)
T PRK05620 388 ----IQVRGN-WVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEW 462 (576)
T ss_pred ----EEEEcC-cccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEE
Confidence 556688 4789999986 34 3444433321 136899999999999999999999999999999999
Q ss_pred echHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCC---ccCHHHHHHHHHccCCCCCcceEEEEecCccCC
Q psy12852 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSN---QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMT 992 (1102)
Q Consensus 917 i~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~---~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t 992 (1102)
|+|.|||++|.+||+|.+++|++.++.. .++..+++++ .++. ..+.++|+++|+++||.|++|+.|+++++||+|
T Consensus 463 i~~~eIE~~l~~~p~v~~~~vv~~~~~~-~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t 541 (576)
T PRK05620 463 IYSAQLENYIMAAPEVVECAVIGYPDDK-WGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKT 541 (576)
T ss_pred EcHHHHHHHHhcCCCceEEEEEeccCCC-cCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCC
Confidence 9999999999999999999999966554 3444444444 3222 235789999999999999999999999999999
Q ss_pred CCccchhhhhhhcCCC
Q psy12852 993 GTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 993 ~~GKidr~~L~~~~~~ 1008 (1102)
++||+||++|+++..+
T Consensus 542 ~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 542 SVGKFDKKDLRQHLAD 557 (576)
T ss_pred CcccCcHHHHHHHHhc
Confidence 9999999999988654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=542.85 Aligned_cols=495 Identities=20% Similarity=0.263 Sum_probs=373.6
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..++.. +++.+|+++|+..... |+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus 12 l~~~l~~--~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~ 89 (540)
T PRK06164 12 LASLLDA--HARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIA 89 (540)
T ss_pred HHHHHHH--HHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 4444443 5899999999986543 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchh-----HHHHHHhc-CCCc-eEEEecCCCCCCCC-----hhHhhccCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYP-----EIEAIRES-IPDV-KLFLLDETKPDLPN-----LSDLMKTTPASE 627 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~-~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 627 (1102)
+++..+.+++.++++++++++++++++... .+...... .+.. .++.++........ ............
T Consensus 90 l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
T PRK06164 90 VNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAP 169 (540)
T ss_pred cCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccccccCC
Confidence 999999999999999999999999876421 11111111 1111 23333311100000 000000000000
Q ss_pred --CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCc
Q psy12852 628 --VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705 (1102)
Q Consensus 628 --~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~ 705 (1102)
........++++++++|||||||+||||+++|+++.+.+......+++.+++++++++|++|..| +..++.++..|+
T Consensus 170 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g-~~~~~~~l~~G~ 248 (540)
T PRK06164 170 PAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG-FSTLLGALAGGA 248 (540)
T ss_pred cccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHH-HHHHHHHHhcCc
Confidence 00012334688999999999999999999999999999888888899999999999999999998 678999999999
Q ss_pred eEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhc-cCCccccccceeeeec-cCCCHHHHHHHHHHhCcchhhhcc
Q psy12852 706 SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS-KESEADYSHQVVKMIG-VGMRGDIWAKFVKRFHVQTIIEFY 783 (1102)
Q Consensus 706 ~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~-~~~~~~~~l~~~~~~G-e~l~~~~~~~~~~~~~~~~l~n~Y 783 (1102)
++++.+.+++..+++.|+++++|+++++|+++..|... .......+++.+.++| .+...++.+.+.+. + +++++.|
T Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~Y 326 (540)
T PRK06164 249 PLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFASFAPALGELAALARAR-G-VPLTGLY 326 (540)
T ss_pred eEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcccCCCcceeeeeeccCCcchHHHHHHHhhc-C-Cceecce
Confidence 99999889999999999999999999999999998876 2222333444444444 44555555555544 3 5899999
Q ss_pred ccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 784 GATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 784 G~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
|+||++..++..............++......+.+.++|++++.+ ++.|+.||++ +.|+ .++.|
T Consensus 327 G~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~-----------~~~g~~Gel~----v~g~-~~~~g 390 (540)
T PRK06164 327 GSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL-----------LPDGESGEIE----IRAP-SLMRG 390 (540)
T ss_pred eeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC-----------CCCCCeeEEE----Eecc-ccccc
Confidence 999998766544322211111111111111344556667665544 3667766655 6688 47899
Q ss_pred cCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEc
Q psy12852 864 YADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942 (1102)
Q Consensus 864 Y~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~ 942 (1102)
|++++ .|.+.|.. ++||+|||+|+++++|.+++.||.||+||++|++|+|.|||++|.++++|.+++|++++
T Consensus 391 Y~~~~~~t~~~~~~------~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~- 463 (540)
T PRK06164 391 YLDNPDATARALTD------DGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGAT- 463 (540)
T ss_pred ccCCchhhhhcccC------CCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecC-
Confidence 99887 55555532 67999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCceeEEEEEc--CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCc---cchhhhhhhcCC
Q psy12852 943 GDLDGRAGMIAIVD--TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTF---KIKKIQLQNEGF 1007 (1102)
Q Consensus 943 ~~~~~~~~l~~~v~--~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~G---Kidr~~L~~~~~ 1007 (1102)
. .+...+++++. .+...+.++++++++++||.|++|+.|++++.+|+|++| |++|+.|+++..
T Consensus 464 -~-~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~ 531 (540)
T PRK06164 464 -R-DGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQ 531 (540)
T ss_pred -C-CCceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHH
Confidence 2 23333444442 333477899999999999999999999999999999999 999999988643
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=537.87 Aligned_cols=472 Identities=20% Similarity=0.249 Sum_probs=359.3
Q ss_pred hcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++|+.+.+ +|+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|+++.++.
T Consensus 6 ~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~ 85 (501)
T PRK13390 6 HAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTA 85 (501)
T ss_pred hhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCH
Confidence 578899999997632 299999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECC
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTS 646 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 646 (1102)
+++.+++++++++++++++.............. . .+.+.........+++...... + ......++++|+|||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~a~i~~TS 157 (501)
T PRK13390 86 PEADYIVGDSGARVLVASAALDGLAAKVGADLP-L-RLSFGGEIDGFGSFEAALAGAG---P---RLTEQPCGAVMLYSS 157 (501)
T ss_pred HHHHHHHHhcCCcEEEEcchhhhHHHHhhhccc-e-EEEecCcccccccHHHHhcccC---C---CCCCCcccEEEEeCC
Confidence 999999999999999998765433222211111 1 1122211111122222211110 0 111223579999999
Q ss_pred CCCCCCceEEe--ccHHHHHhh----hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHH
Q psy12852 647 GTTGLPKAAIM--PNFKVLLGG----QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFR 720 (1102)
Q Consensus 647 GSTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~ 720 (1102)
||||.||||++ +|+++.... ......+++..+|+++..+|++|..++ ...+..+..|+++++.+.+++..+++
T Consensus 158 GTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 236 (501)
T PRK13390 158 GTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL-RWCSMVHALGGTVVLAKRFDAQATLG 236 (501)
T ss_pred CCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHH-HHHHHHHhcCceEEEcCCcCHHHHHH
Confidence 99999999995 566654421 122345778899999999999999884 33445678899999988899999999
Q ss_pred HHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC
Q psy12852 721 DCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796 (1102)
Q Consensus 721 ~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 796 (1102)
.|+++++|++.++|+++..|+..... ....+++.++.||+++++++.+.+.+.++. .+++.||+||++.++....
T Consensus 237 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~ 315 (501)
T PRK13390 237 HVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP-IVYEYYSSTEAHGMTFIDS 315 (501)
T ss_pred HHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCC-ceeeeecccccCceEEecc
Confidence 99999999999999999988764321 123467778889999999999999988765 8999999999986543221
Q ss_pred ----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHH
Q psy12852 797 ----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQ 871 (1102)
Q Consensus 797 ----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~ 871 (1102)
...+.+|.+. +..+.++|++ |. +++.|++||++ +.|+. ++.||++++ .+.
T Consensus 316 ~~~~~~~~~~G~~~--------~g~~~i~d~~-~~-----------~~~~g~~Gel~----v~~~~-~~~gy~~~~~~t~ 370 (501)
T PRK13390 316 PDWLAHPGSVGRSV--------LGDLHICDDD-GN-----------ELPAGRIGTVY----FERDR-LPFRYLNDPEKTA 370 (501)
T ss_pred hhhccCCCCcCCcc--------cceEEEECCC-CC-----------CCCCCCceEEE----EecCC-ccccccCChhhhH
Confidence 1223344432 2235555543 43 45788888876 45774 677999887 555
Q ss_pred HHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeE
Q psy12852 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951 (1102)
Q Consensus 872 ~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l 951 (1102)
++|.. .+++||+|||+|++++||.+++.||.|++||++|+||+|.|||++|.++|+|.+++|++++++.. ++...
T Consensus 371 ~~~~~----~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~-~e~~~ 445 (501)
T PRK13390 371 AAQHP----AHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEM-GEQVK 445 (501)
T ss_pred Hhhcc----CCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCccc-CceeE
Confidence 55532 23579999999999999999999999999999999999999999999999999999999665542 33433
Q ss_pred EEEE-cCCCcc---CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 952 IAIV-DTSNQV---DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 952 ~~~v-~~~~~~---~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
++++ ..+... ..++++++++++||.||+|..++++++||+|++|||+|++|+
T Consensus 446 ~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 446 AVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred EEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 3333 222222 246899999999999999999999999999999999999984
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=536.33 Aligned_cols=465 Identities=21% Similarity=0.294 Sum_probs=369.6
Q ss_pred hcccCCcccchhh--cc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTV--KN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~--~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+++.+|+++|+.+ .+ +|+||.+.++++|..|.+.|+++|++|++++++++++++++|||+++|++++|+++..+.
T Consensus 4 ~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~ 83 (488)
T PRK09088 4 HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA 83 (488)
T ss_pred hhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCH
Confidence 5778999999875 22 399999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECC
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTS 646 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 646 (1102)
+++.+++++++++++|+++...... ...+ .++++................++++++++|||
T Consensus 84 ~~~~~~~~~~~~~~ii~~~~~~~~~---------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 144 (488)
T PRK09088 84 SELDALLQDAEPRLLLGDDAVAAGR---------TDVE----------DLAAFIASADALEPADTPSIPPERVSLILFTS 144 (488)
T ss_pred HHHHHHHHhCCCCEEEEcchhhccc---------cccc----------chhhhhhhccccccccCCCCCCCCceEEEeCC
Confidence 9999999999999999986533210 0001 11111111111111111234567899999999
Q ss_pred CCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHh--h
Q psy12852 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCA--K 724 (1102)
Q Consensus 647 GSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~--~ 724 (1102)
||||.||||+++|+++...+..+.....+..+|++++.+|++|..+++..++.++..|+++++.+.+++..++..+. +
T Consensus 145 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 224 (488)
T PRK09088 145 GTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPA 224 (488)
T ss_pred CCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhc
Confidence 99999999999999998887777777788899999999999999997778889999999999988888999988886 4
Q ss_pred cccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC-C-----
Q psy12852 725 YKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM-D----- 796 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~-~----- 796 (1102)
+++|+++.+|++++.+...... ....+++.+++||++++....+.+.+. + ..+++.||+||++...... .
T Consensus 225 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g-~~v~~~YG~TE~~~~~~~~~~~~~~~ 302 (488)
T PRK09088 225 LGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD-G-IPMVDGFGMSEAGTVFGMSVDCDVIR 302 (488)
T ss_pred cCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh-C-CceeeeecccccccccccCCCccccc
Confidence 8999999999999998876432 233467888999999999998888764 4 4899999999998654321 1
Q ss_pred CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhh
Q psy12852 797 NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILE 876 (1102)
Q Consensus 797 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~ 876 (1102)
...+++|.+. ..+.+.++|++ +. +++.|.+||++ +.|+ .++.||++++..+++.+.
T Consensus 303 ~~~~~vG~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~~~-~~~~gY~~~~~~~~~~~~ 358 (488)
T PRK09088 303 AKAGAAGIPT-------PTVQTRVVDDQ-GN-----------DCPAGVPGELL----LRGP-NLSPGYWRRPQATARAFT 358 (488)
T ss_pred ccCCccccCC-------CCcEEEEECCC-CC-----------CCcCCCceEEE----EECC-ccchhhcCChhhhhhhhc
Confidence 1233444432 23444455543 43 34677777766 5688 588999998744333222
Q ss_pred cccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-
Q psy12852 877 NVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV- 955 (1102)
Q Consensus 877 ~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v- 955 (1102)
+++||+|||+|+++++|.+++.||+||+||++|++|+|.|||++|.++|+|.+++|++++.+. .++...++++
T Consensus 359 -----~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~-~g~~~~~~v~~ 432 (488)
T PRK09088 359 -----GDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQ-WGEVGYLAIVP 432 (488)
T ss_pred -----CCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCcc-CCceeEEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999865543 2444344443
Q ss_pred cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 956 DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 956 ~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
..+...+.++++++++++++.|++|..|+++++||+|++||++|++|+++..
T Consensus 433 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~ 484 (488)
T PRK09088 433 ADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALA 484 (488)
T ss_pred CCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHH
Confidence 3333457889999999999999999999999999999999999999998754
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=539.82 Aligned_cols=488 Identities=17% Similarity=0.211 Sum_probs=377.0
Q ss_pred HHHHHHHHhhcccCCcccchhh---cc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 483 YSRFKQEASNARSTNDAAATTV---KN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~---~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+..+++. .++.+|+.+++.+ ++ +|.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 12 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 12 ISSLIAH--AARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred HHHHHHH--HHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 4444444 4778888888863 21 3999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceE-EEecCCC------CCCCChhHhhccCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETK------PDLPNLSDLMKTTPASEV 628 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~ 628 (1102)
+++|++|.++.+++.++++++++++++++.+..+.+..+....+..+. +.++... .....++++........
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 168 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDY- 168 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCc-
Confidence 999999999999999999999999999998877766665544444332 2222211 11233344333222111
Q ss_pred CCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHh--hhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCce
Q psy12852 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG--GQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706 (1102)
Q Consensus 629 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~ 706 (1102)
......++++++++|||||||.||||++||+++..+ .......+++.++|+++...|++|..+ ...++.++..|++
T Consensus 169 -~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~-~~~~~~~l~~G~~ 246 (539)
T PRK07008 169 -DWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNA-WGLPYSAPLTGAK 246 (539)
T ss_pred -CcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhh-HHHHHHHHhcCce
Confidence 113456788999999999999999999999998643 233445778889999999999999876 5556788999999
Q ss_pred EEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcc
Q psy12852 707 IAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFY 783 (1102)
Q Consensus 707 lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 783 (1102)
+++.+ .+++..+++.++++++|++.++|+++..|+..... ....+++.++++|+++++++.++|.+.++. .+++.|
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~-~l~~~Y 325 (539)
T PRK07008 247 LVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGV-EVIHAW 325 (539)
T ss_pred EEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCC-ceeccc
Confidence 99875 47999999999999999999999999998875433 234567778889999999999999998865 899999
Q ss_pred ccccCCcccccCCCC--------------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceE
Q psy12852 784 GATEGNANLVNMDNT--------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMII 849 (1102)
Q Consensus 784 G~TE~~~~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~ 849 (1102)
|+||++..++..... ...+|.+. ..+.+.++|++ +.++. ...++.||
T Consensus 326 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-------pg~~~~i~d~~-~~~~~---------~~~~~~Ge-- 386 (539)
T PRK07008 326 GMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVI-------YGVDMKIVGDD-GRELP---------WDGKAFGD-- 386 (539)
T ss_pred ccccccccceecccccccccCCchhhhhhcccCCccc-------cceEEEEECCC-CCccC---------CCCCcceE--
Confidence 999998655432211 01222221 23455555543 43331 01123455
Q ss_pred EEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc
Q psy12852 850 GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929 (1102)
Q Consensus 850 gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~ 929 (1102)
|++.|+. ++.||++++. ..| . ++||+|||+|++++||.+++.||+||+||++|++|+|.|||+++.++
T Consensus 387 --i~v~g~~-~~~gy~~~~~--~~~-----~--~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 454 (539)
T PRK07008 387 --LQVRGPW-VIDRYFRGDA--SPL-----V--DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAH 454 (539)
T ss_pred --EEEeCCc-cchhhcCChh--hhh-----c--CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhC
Confidence 5566884 7889999872 222 2 57999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 930 LPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 930 ~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|+|.+++|+++++.. .++..+++++ ..+...+.++++++++++|++|++|..|+++++||+|++||++|++|++...+
T Consensus 455 p~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 455 PAVAEAACIACAHPK-WDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred CceeEEEEEecCCch-hccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence 999999999866543 2344444444 33345678899999999999999999999999999999999999999876533
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=594.06 Aligned_cols=491 Identities=20% Similarity=0.259 Sum_probs=385.1
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
..+.+.+ +++++|+++|+.+.. +|+||.++++++|+.|.+ ++++|++|+++++|+++++++++||+++|+++
T Consensus 617 l~~~~~~---~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~ 692 (1146)
T PRK08633 617 LAEAWID---TAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP 692 (1146)
T ss_pred HHHHHHH---HHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence 3444444 588999999998642 299999999999999987 48999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHH--hcCC-CceEEEecCCCCCCCC---hhHhhccCCCC----C
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIR--ESIP-DVKLFLLDETKPDLPN---LSDLMKTTPAS----E 627 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~ 627 (1102)
+|++|..+.+++.+++++++++++++++...+.+.... ...+ ..+++..++....... +.+........ .
T Consensus 693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1146)
T PRK08633 693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLK 772 (1146)
T ss_pred EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHHHH
Confidence 99999999999999999999999999877655543210 0111 1334444332111111 11111110000 0
Q ss_pred CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 628 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
........++|+++++|||||||.||||++||+++.+.+......++++++|++++.+|++|..++...++.+++.|+++
T Consensus 773 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~ 852 (1146)
T PRK08633 773 RLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKV 852 (1146)
T ss_pred hhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEE
Confidence 00013456799999999999999999999999999999888888899999999999999999999777789999999999
Q ss_pred EEeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccc
Q psy12852 708 AIRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 708 v~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 784 (1102)
++.++ +++..+++.++++++|++.++|++++.+.+... .....+++.+++|||++++++.++|.+.++. +++|.||
T Consensus 853 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~-~~~~~YG 931 (1146)
T PRK08633 853 VYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYG 931 (1146)
T ss_pred EEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCC-Ceecccc
Confidence 98764 789999999999999999999999999887533 2234577888999999999999999999865 8999999
Q ss_pred cccCCcccccCCC-------------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEE
Q psy12852 785 ATEGNANLVNMDN-------------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851 (1102)
Q Consensus 785 ~TE~~~~~~~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~ge 851 (1102)
+||++.+++.... .++++|.+. .+..+.++|++++++ +|.|++||++
T Consensus 932 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~-------~~~~v~i~d~~~~~~-----------~~~g~~Gel~-- 991 (1146)
T PRK08633 932 ATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPL-------PGVAVRIVDPETFEE-----------LPPGEDGLIL-- 991 (1146)
T ss_pred cccCcceEEEecCcccccccccccCCCCCCccccC-------CCCEEEEEcCCCCcc-----------CCCCCceEEE--
Confidence 9999876643211 122333332 345566677665543 4778888766
Q ss_pred EeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcC
Q psy12852 852 IKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930 (1102)
Q Consensus 852 i~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~ 930 (1102)
++|+ .++.||++++ .+.+.|.. .++++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||
T Consensus 992 --v~g~-~~~~gY~~~~~~t~~~~~~---~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~ 1065 (1146)
T PRK08633 992 --IGGP-QVMKGYLGDPEKTAEVIKD---IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKAL 1065 (1146)
T ss_pred --EcCC-CccccccCCccchHHHhhc---CCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhcc
Confidence 5688 5889999987 45555532 245799999999999999999999999999999999999999999999999
Q ss_pred C--cceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 931 P--YTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 931 ~--V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+ +.+++|++++++. .++. +++++.. ...+.+++++++++ ++|+|++|..+++++++|+|+|||+||++|++..
T Consensus 1066 ~~~~~~~~v~~~~~~~-~g~~-~~~~v~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~ 1141 (1146)
T PRK08633 1066 GGEEVVFAVTAVPDEK-KGEK-LVVLHTC-GAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELA 1141 (1146)
T ss_pred CCCCceEEEEeccCCC-CCcE-EEEEEec-CccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHH
Confidence 4 6678888865543 3343 4444433 34678899999975 7999999999999999999999999999998763
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-56 Score=540.83 Aligned_cols=481 Identities=19% Similarity=0.230 Sum_probs=370.2
Q ss_pred hcccCCcccchhhcc---hHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKN---LEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~---~Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+++++|+++|+...+ +|+||.++++++|+.|.+. |+++|++|+++++|++++++++|||+++|++++|+++.++.+
T Consensus 33 ~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~ 112 (562)
T PRK12492 33 SCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAR 112 (562)
T ss_pred HHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHH
Confidence 588899999998754 3999999999999999985 999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEec--CC------------------------CCCCCChhHhhc
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLD--ET------------------------KPDLPNLSDLMK 621 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------------~~~~~~~~~~~~ 621 (1102)
++.+++++++++++++++.....+...........++... +. .+....+++...
T Consensus 113 ~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (562)
T PRK12492 113 EMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALR 192 (562)
T ss_pred HHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCcccccHHHHHh
Confidence 9999999999999999876554443332211100010000 00 001112222221
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC---------CCC-CcEEEEecCchhhh
Q psy12852 622 TTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS---------LGS-GDVIYNCLPMYHSA 691 (1102)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~---------~~~-~d~~l~~~pl~~~~ 691 (1102)
..... .........+++++|+|||||||.||||+++|+++..++......++ +.. +++++...|++|..
T Consensus 193 ~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 271 (562)
T PRK12492 193 QGRGL-SLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271 (562)
T ss_pred ccCCC-CCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHH
Confidence 11111 11112456789999999999999999999999999877665544332 233 35778899999999
Q ss_pred hHHHHHHhHhhcCceEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHH
Q psy12852 692 GGLIGTIPALILGSSIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWA 768 (1102)
Q Consensus 692 ~~~~~i~~~l~~G~~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~ 768 (1102)
+....++..+..|+++++.. +.++..+++.++++++|++..+|+++..|+..+... ...+++++++||+++++++.+
T Consensus 272 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~ 351 (562)
T PRK12492 272 AFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAE 351 (562)
T ss_pred HHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHH
Confidence 97777788888999877664 468999999999999999999999999988765422 234678888899999999999
Q ss_pred HHHHHhCcchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCC
Q psy12852 769 KFVKRFHVQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQ 844 (1102)
Q Consensus 769 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~ 844 (1102)
+|.+.++. ++++.||+||++.+++.... ..++.|.+. ....+.++|++ +. +++.|+
T Consensus 352 ~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~-------~~~~v~ivd~~-~~-----------~~~~g~ 411 (562)
T PRK12492 352 RWEQLTGC-TIVEGYGLTETSPVASTNPYGELARLGTVGIPV-------PGTALKVIDDD-GN-----------ELPLGE 411 (562)
T ss_pred HHHHHhCC-ceeeccCccccCceeeecCCcccccCCccceec-------CCCEEEEECCC-CC-----------CCCCCC
Confidence 99988764 89999999999876654321 123344332 33455566654 43 346777
Q ss_pred CcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHH
Q psy12852 845 PGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923 (1102)
Q Consensus 845 ~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE 923 (1102)
.||++ ++|+ .++.||++++ .+.+.|. +++||+|||+|+++++|.++|.||+||+||++|++|+|.|||
T Consensus 412 ~Gel~----v~g~-~~~~gY~~~~~~t~~~~~------~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE 480 (562)
T PRK12492 412 RGELC----IKGP-QVMKGYWQQPEATAEALD------AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE 480 (562)
T ss_pred ceEEE----EeCC-ccccccccCchhhhhccc------CCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHH
Confidence 77766 5688 4888999886 4554442 268999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 924 ~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
..|.+||.|.+++|+++++.. .++...++++......+.++++++++++|+.|++|..++++++||+|++||++|++|+
T Consensus 481 ~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~ 559 (562)
T PRK12492 481 DVVMAHPKVANCAAIGVPDER-SGEAVKLFVVARDPGLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELR 559 (562)
T ss_pred HHHHhCCCeeEEEEEeccCCC-CCceEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHH
Confidence 999999999999999865443 3344444444444456789999999999999999999999999999999999999998
Q ss_pred hc
Q psy12852 1004 NE 1005 (1102)
Q Consensus 1004 ~~ 1005 (1102)
++
T Consensus 560 ~~ 561 (562)
T PRK12492 560 DI 561 (562)
T ss_pred hh
Confidence 64
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=534.18 Aligned_cols=453 Identities=20% Similarity=0.223 Sum_probs=366.3
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
.++..++++|+.+++. |+||.++++++|..|+ ++++|+++++++++++++++||+++|++++|+++..+.++
T Consensus 9 ~~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 83 (471)
T PRK07787 9 VAAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE 83 (471)
T ss_pred hhcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence 3566789999988664 9999999999999996 4699999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.++++++++++++++..... ..++ .+...... . ... . .....++++++++|||||
T Consensus 84 l~~~l~~~~~~~il~~~~~~~------~~~~---~~~~~~~~---~---------~~~-~--~~~~~~~~~a~i~~TSGT 139 (471)
T PRK07787 84 RRHILADSGAQAWLGPAPDDP------AGLP---HVPVRLHA---R---------SWH-R--YPEPDPDAPALIVYTSGT 139 (471)
T ss_pred HHHHHHhcCCCEEEecCCccc------cccc---ceeeeccc---c---------ccc-c--CCCCCCCceEEEEECCCC
Confidence 999999999999999763110 0111 11111000 0 000 0 122457899999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt 728 (1102)
||.||||+++|+++..++......+++.++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.|+ +++|
T Consensus 140 TG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t 218 (471)
T PRK07787 140 TGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGT 218 (471)
T ss_pred CCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCce
Confidence 999999999999999988888888999999999999999999998889999999999999998899999999999 9999
Q ss_pred cccccHHHHHHHHhccC-CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccc
Q psy12852 729 AGIYIGEMCRYLLASKE-SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGI 804 (1102)
Q Consensus 729 ~~~~~Ps~~~~l~~~~~-~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~ 804 (1102)
++.++|+++..|+.... .....+++.++.||+++++++.++|.+.++. ++++.||+||++..++.... .++++|.
T Consensus 219 ~~~~~P~~~~~l~~~~~~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~ 297 (471)
T PRK07787 219 LYFGVPTVWSRIAADPEAARALRGARLLVSGSAALPVPVFDRLAALTGH-RPVERYGMTETLITLSTRADGERRPGWVGL 297 (471)
T ss_pred EEEcchHHHHHHHhCccccccccceeEEEECCCCCCHHHHHHHHHHcCC-CeecccCccccCcceecCCCCcccCCcccc
Confidence 99999999999886432 2234567888889999999999999988865 89999999999865543322 2233444
Q ss_pred cCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCC
Q psy12852 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGD 883 (1102)
Q Consensus 805 ~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~ 883 (1102)
+. ....+.++|++ |.++ + ..|+..|||++.|+ .++.||++++ .+.+.|.. +
T Consensus 298 ~~-------~g~~~~i~d~~-~~~~-----------~--~~~~~~Gei~v~g~-~~~~gy~~~~~~t~~~~~~------~ 349 (471)
T PRK07787 298 PL-------AGVETRLVDED-GGPV-----------P--HDGETVGELQVRGP-TLFDGYLNRPDATAAAFTA------D 349 (471)
T ss_pred cC-------CCcEEEEECCC-CCCC-----------C--CCCCCceEEEEECc-ccchhhcCChhhchhcccC------C
Confidence 32 23455556654 4443 2 12333455667788 4788999886 55555532 5
Q ss_pred eEEEecceeEEecCccEEEEccC-CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccC
Q psy12852 884 KYFLSGDMMVMDELGYLYFKDRT-GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVD 962 (1102)
Q Consensus 884 ~~yrTGDl~~~~~dG~l~~~GR~-dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~ 962 (1102)
+||+|||+|++++||.++++||+ |++||++|++|+|.|||++|.+++.|++++|++.++.. ....+++++......+
T Consensus 350 ~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~--~~~~~~a~v~~~~~~~ 427 (471)
T PRK07787 350 GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDD--LGQRIVAYVVGADDVA 427 (471)
T ss_pred CceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccc--cCeEEEEEEEeCCCCC
Confidence 79999999999999999999996 89999999999999999999999999999999855433 3445556655455678
Q ss_pred HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 963 LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 963 ~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
.++++++++++|++|++|..++++++||+|++||++|++|++.
T Consensus 428 ~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 428 ADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred HHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence 8999999999999999999999999999999999999999864
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=534.99 Aligned_cols=485 Identities=19% Similarity=0.221 Sum_probs=383.4
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
+..+.|++ +++++|+++|+.+.+. |+||.+.++++|+.|.+.|+++|++|+++++++++++++++||+++|+++
T Consensus 13 ~~~~~~~~---~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 89 (524)
T PRK06188 13 TYGHLLVS---ALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89 (524)
T ss_pred cHHHHHHH---HHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 34445555 4888999999988664 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCc-chhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCCCCCCCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSAL-YYPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQ 635 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1102)
+|++|..+.+++..+++.++++.+++++. ............+.. .++.++... ....+.+....... ........
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~ 166 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP-DGVDLLAAAAKFGP--APLVAAAL 166 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc-chhhHHHhhhccCc--ccccccCC
Confidence 99999999999999999999999999876 444333333333332 233333211 11111111111111 11112334
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
++++++++|||||||.||||+++|+++...+......+++..++++++..|++|..+ . .++.++..|+++++.+.+++
T Consensus 167 ~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g-~-~~~~~l~~G~~~~~~~~~~~ 244 (524)
T PRK06188 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGG-A-FFLPTLLRGGTVIVLAKFDP 244 (524)
T ss_pred CCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhh-H-HHHHHHHcCCEEEEcCCCCH
Confidence 567999999999999999999999999999998888999999999999999999877 3 46788999999999999999
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 793 (1102)
..+++.++++++|++.++|+++..++...... ...+++.+++||++++++..+.+.+.++. .+++.||+||++..++
T Consensus 245 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~ 323 (524)
T PRK06188 245 AEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGP-IFAQYYGQTEAPMVIT 323 (524)
T ss_pred HHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCc-hhhheeCccccCCcee
Confidence 99999999999999999999999998765432 23467888889999999999999998876 7999999999976554
Q ss_pred cCCC---------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccccc
Q psy12852 794 NMDN---------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864 (1102)
Q Consensus 794 ~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY 864 (1102)
.... ...++|.+. ....+.++|++ +. +++.|+.||++ +.|+ .++.||
T Consensus 324 ~~~~~~~~~~~~~~~~~~G~p~-------~g~~v~i~~~~-~~-----------~~~~g~~Gel~----v~~~-~~~~gy 379 (524)
T PRK06188 324 YLRKRDHDPDDPKRLTSCGRPT-------PGLRVALLDED-GR-----------EVAQGEVGEIC----VRGP-LVMDGY 379 (524)
T ss_pred ecCchhccccccccCCcccccc-------CCcEEEEEcCC-CC-----------CCCCCCeeEEE----EECc-chhhhh
Confidence 3321 112233332 23344445544 43 34677777766 5588 478899
Q ss_pred CCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcC
Q psy12852 865 ADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVG 943 (1102)
Q Consensus 865 ~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~ 943 (1102)
++++ .+...| . ++||+|||+|++++||.+++.||.|++||++|.+|+|.+||++|.++++|.+++|++++++
T Consensus 380 ~~~~~~~~~~~-~------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~ 452 (524)
T PRK06188 380 WNRPEETAEAF-R------DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452 (524)
T ss_pred cCChHHhhhhh-c------CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCC
Confidence 9987 444443 1 5799999999999999999999999999999999999999999999999999999986544
Q ss_pred CCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 944 DLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 944 ~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
. .++...++++ .++...+.++++++++++++.|++|..|+++++||+|++||+||++|++.+
T Consensus 453 ~-~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~ 515 (524)
T PRK06188 453 K-WGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARY 515 (524)
T ss_pred C-cCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHH
Confidence 4 2333333333 334456788999999999999999999999999999999999999999875
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=528.85 Aligned_cols=418 Identities=17% Similarity=0.153 Sum_probs=332.7
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCc
Q psy12852 508 EAQIDEYSNKIARILQDDGF-KKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSAL 586 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv-~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~ 586 (1102)
|+||.++++++|+.|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.++++++++++++++++++.+
T Consensus 22 ~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~~ 101 (452)
T PRK07445 22 SQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGLDQ 101 (452)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEecCc
Confidence 89999999999999999988 57999999999999999999999999999999999999999999999999999998765
Q ss_pred chhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh
Q psy12852 587 YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666 (1102)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~ 666 (1102)
..... ... ... . .....++++++++|||||||.||||++||+++...+
T Consensus 102 ~~~~~--------------~~~--------------~~~--~--~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~ 149 (452)
T PRK07445 102 LKLSH--------------PPP--------------LPS--Q--GILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASV 149 (452)
T ss_pred ccccc--------------CCC--------------CCc--c--ccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHH
Confidence 32100 000 000 0 012356899999999999999999999999999888
Q ss_pred hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC
Q psy12852 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746 (1102)
Q Consensus 667 ~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~ 746 (1102)
.+....+++.+ ++.++.+|++|..| +..++.++..|+++++.+............++++|++.++|++++.++... .
T Consensus 150 ~~~~~~~~~~~-~~~~~~~Pl~h~~g-~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~-~ 226 (452)
T PRK07445 150 QGFQRYFQLQQ-VNSFCVLPLYHVSG-LMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR-P 226 (452)
T ss_pred HHHHHHhcCCC-CceEeccCchhhhh-HHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC-h
Confidence 87777777765 46788999999998 678889999999999987432222234445788999999999999987632 2
Q ss_pred ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC-----CCCcccccCCCCCCcCCCeeeEEe
Q psy12852 747 EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN-----TEGAVGIIPTLLPTFLHPVAIIQF 821 (1102)
Q Consensus 747 ~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~ 821 (1102)
....+++.+++||+++++++.+++.+ ++ .++++.||+||++..++.... ...++|.
T Consensus 227 ~~l~~l~~i~~gG~~l~~~~~~~~~~-~~-~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~----------------- 287 (452)
T PRK07445 227 QWLAQFRTILLGGAPAWPSLLEQARQ-LQ-LRLAPTYGMTETASQIATLKPDDFLAGNNSSGQ----------------- 287 (452)
T ss_pred hhhhcceEEEECCccCCHHHHHHHHh-cC-CeEecCcchhhhcccccccCchhhccCCCcCCc-----------------
Confidence 23457788899999999999998865 34 489999999998755433211 1112222
Q ss_pred ecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEE
Q psy12852 822 DLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901 (1102)
Q Consensus 822 d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~ 901 (1102)
++.+.+.... .|+.||++ ++|| .++.||++++. ..++||+|||+|++|+||+++
T Consensus 288 ------~~p~~~v~i~----~g~~Gel~----v~g~-~~~~gY~~~~~-----------~~~g~~~TGDl~~~d~dG~l~ 341 (452)
T PRK07445 288 ------VLPHAQITIP----ANQTGNIT----IQAQ-SLALGYYPQIL-----------DSQGIFETDDLGYLDAQGYLH 341 (452)
T ss_pred ------cCCCCeEEEc----CCCcceEE----EeCC-ccchhhcCCcc-----------CCCCEEECCCEEEEcCCCCEE
Confidence 2211100000 35566655 6688 48889997531 136899999999999999999
Q ss_pred EEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcce
Q psy12852 902 FKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPL 981 (1102)
Q Consensus 902 ~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~ 981 (1102)
|.||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .|+..+++++..+...+.++++++++++|+.|++|+
T Consensus 342 ~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~-~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~~~~~P~ 420 (452)
T PRK07445 342 ILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH-WGEVVTAIYVPKDPSISLEELKTAIKDQLSPFKQPK 420 (452)
T ss_pred EEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcC-CCcEEEEEEEeCCCCCCHHHHHHHHHHhCCcccCCe
Confidence 9999999999999999999999999999999999999966553 355555555544445678999999999999999999
Q ss_pred EEEEecCccCCCCccchhhhhhhcC
Q psy12852 982 FVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 982 ~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
.++++++||+|++||++|++|+++.
T Consensus 421 ~i~~v~~lP~t~~GKi~r~~L~~~~ 445 (452)
T PRK07445 421 HWIPVPQLPRNPQGKINRQQLQQIA 445 (452)
T ss_pred EEEEecCCCCCCCcccCHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=556.23 Aligned_cols=512 Identities=20% Similarity=0.193 Sum_probs=373.1
Q ss_pred CcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhc---------------------
Q psy12852 447 DEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVK--------------------- 505 (1102)
Q Consensus 447 ~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~--------------------- 505 (1102)
+|+.++..++++.+++++.+...|+. ..+..+.|.+ +++++|+++|+.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~~~~~~---~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~ 112 (700)
T PTZ00216 42 ENASAIYRIAGVTDEEHERLRNEWYY------GPNFLQRLER---ICKERGDRRALAYRPVERVEKEVVKDADGKERTME 112 (700)
T ss_pred CCCCCcccCcccccchhcccccccCC------CCCHHHHHHH---HHHhCCCCCeEEEeccccccccccccCCCcccccc
Confidence 78889999998888877766554432 1234444444 59999999999862
Q ss_pred ------c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhcc
Q psy12852 506 ------N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576 (1102)
Q Consensus 506 ------~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~ 576 (1102)
. +|+||.++++++|+.|.+.|+++|++|+|+++|+++|+++++||+++|++++|+++.++.++++++++++
T Consensus 113 ~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s 192 (700)
T PTZ00216 113 VTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRET 192 (700)
T ss_pred ccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhcc
Confidence 1 2999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCcchhHHHHHHhc--CCCceEEEecCCCC-------CCCChhHhhccCC--CCCCCCCCCCCCCCeEEEEEC
Q psy12852 577 KSKAIIVSALYYPEIEAIRES--IPDVKLFLLDETKP-------DLPNLSDLMKTTP--ASEVKPSEPLQTSDSLLYIYT 645 (1102)
Q Consensus 577 ~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~ii~T 645 (1102)
++++++++......+...... .+...++.++.... ....++++..... ...........++|+++|+||
T Consensus 193 ~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyT 272 (700)
T PTZ00216 193 ECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYT 272 (700)
T ss_pred CccEEEECHHHHHHHHHhhhhccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEe
Confidence 999999987655444332221 23455666554211 1234444443321 111111234578999999999
Q ss_pred CCCCCCCceEEeccHHHHHhhhhhhhcc----C-CCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHH
Q psy12852 646 SGTTGLPKAAIMPNFKVLLGGQVGKHLL----S-LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFR 720 (1102)
Q Consensus 646 SGSTG~PKgV~~th~~l~~~~~~~~~~~----~-~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~ 720 (1102)
|||||.||||++||+|+.+.+.+....+ + ++++|++++++|++|.++. ......+..|+++++. ++..+.+
T Consensus 273 SGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~-~~~~~~l~~G~~v~~~---~~~~l~~ 348 (700)
T PTZ00216 273 SGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEF-GVTNIFLARGALIGFG---SPRTLTD 348 (700)
T ss_pred CCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHH-HHHHHHHHcCCEEEEC---CHHHhhh
Confidence 9999999999999999998877665443 2 4788999999999998873 3344557788877764 3444444
Q ss_pred -------HHhhcccccccccHHHHHHHHhccCC-----------------------------c--------------ccc
Q psy12852 721 -------DCAKYKCNAGIYIGEMCRYLLASKES-----------------------------E--------------ADY 750 (1102)
Q Consensus 721 -------~i~~~~vt~~~~~Ps~~~~l~~~~~~-----------------------------~--------------~~~ 750 (1102)
.++++++|++.++|++++.+.+.... . ...
T Consensus 349 ~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~ 428 (700)
T PTZ00216 349 TFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGG 428 (700)
T ss_pred hhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCC
Confidence 68899999999999999887542100 0 003
Q ss_pred ccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCC
Q psy12852 751 SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQ 827 (1102)
Q Consensus 751 ~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~ 827 (1102)
.++.+++||+++++++.+.+...++ .++|+||+||++..++.... ..+++|.+. .++.+.++|++...
T Consensus 429 ~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~-------~g~evkI~d~~~~~ 499 (700)
T PTZ00216 429 RVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLL-------KGVEMKLLDTEEYK 499 (700)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCcccccccccccCCCCCCCCCcCCcC-------CCeEEEEeechhhc
Confidence 5677888999999999876666554 89999999999876553322 223344432 34555566654211
Q ss_pred CcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccC
Q psy12852 828 PIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906 (1102)
Q Consensus 828 ~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~ 906 (1102)
. ..+++..|| |+++|| .++.||+++| .|.+.|.. ++||+|||+|++|+||+|+|+||+
T Consensus 500 ~----------~~~~~~~GE----L~vrG~-~v~~GY~~~pe~T~~~f~~------dGw~~TGDig~~d~dG~l~i~GR~ 558 (700)
T PTZ00216 500 H----------TDTPEPRGE----ILLRGP-FLFKGYYKQEELTREVLDE------DGWFHTGDVGSIAANGTLRIIGRV 558 (700)
T ss_pred c----------CCCCCCCce----EEEcCC-cccchhcCChhHhhhhccc------cCCeeccceEEEcCCCcEEEEEeh
Confidence 1 113334455 557799 5899999987 66666643 579999999999999999999999
Q ss_pred CCeEE-eCceeechHHHHHHHHhcCCccee--EEEEEEcCCCCCceeEEEEEcCCCc----------c--C---------
Q psy12852 907 GDTYR-WKGENVSTMEVEATISKYLPYTEF--TVYGVKVGDLDGRAGMIAIVDTSNQ----------V--D--------- 962 (1102)
Q Consensus 907 dd~Ik-i~G~ri~~~eIE~~l~~~~~V~~a--~vv~~~~~~~~~~~~l~~~v~~~~~----------~--~--------- 962 (1102)
||+|| .+|++|+|+|||+++.+||.|.++ +|++ .+ ++..+++++.++.. . +
T Consensus 559 kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~--~~---~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (700)
T PTZ00216 559 KALAKNCLGEYIALEALEALYGQNELVVPNGVCVLV--HP---ARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPE 633 (700)
T ss_pred HhheecCCCceeccHHHHHHHhcCcCcccceEEEEE--ec---CCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHH
Confidence 99999 799999999999999999999973 3433 22 23556666644311 0 0
Q ss_pred -HHHHHHHH-----HccCCCCCcceEEEEecC------ccCCCCccchhhhhhhcC
Q psy12852 963 -LKLLVQGL-----DANLPAYARPLFVRIMKA------IEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 963 -~~~l~~~l-----~~~Lp~~~~P~~i~~l~~------lP~t~~GKidr~~L~~~~ 1006 (1102)
.+.+.+.+ +..|..|..|+.|+++.+ --+|+++|+.|+.+.+.+
T Consensus 634 ~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y 689 (700)
T PTZ00216 634 FQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERY 689 (700)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHH
Confidence 11122222 246889999999988754 348999999999998754
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-56 Score=540.55 Aligned_cols=485 Identities=21% Similarity=0.229 Sum_probs=371.8
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
.+.++|+++|+.+.+. |+||.+++.++|++|.+.|+++|++|+++++++.++++++|||+++|++++|++|.++.++
T Consensus 33 ~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~ 112 (563)
T PRK06710 33 MASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERE 112 (563)
T ss_pred HHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHH
Confidence 4788999999987664 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEec--CCC--CC-----------------------CCChhHhhc
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLD--ETK--PD-----------------------LPNLSDLMK 621 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~-----------------------~~~~~~~~~ 621 (1102)
+.++++.++++++++++.....+...........++... ... +. ...+.....
T Consensus 113 l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (563)
T PRK06710 113 LEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEK 192 (563)
T ss_pred HHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhh
Confidence 999999999999999876554433322111101111110 000 00 000000000
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhh-hhccCCCC-CcEEEEecCchhhhhHHHHHHh
Q psy12852 622 TTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGS-GDVIYNCLPMYHSAGGLIGTIP 699 (1102)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~-~~~~~~~~-~d~~l~~~pl~~~~~~~~~i~~ 699 (1102)
.. .. ........++++++++|||||||.||||+++|+++..+.... ...++... ++++++.+|++|..++...++.
T Consensus 193 ~~-~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 270 (563)
T PRK06710 193 EV-NT-GVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNL 270 (563)
T ss_pred cc-cc-ccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHH
Confidence 00 00 000011235789999999999999999999999997554322 22344444 4588899999999886677778
Q ss_pred HhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcc
Q psy12852 700 ALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ 777 (1102)
Q Consensus 700 ~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~ 777 (1102)
++..|+++++.+.+++..+++.|+++++|++.++|+++..++...... ...+++.+++||+++++++.+++.+.++.
T Consensus 271 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~- 349 (563)
T PRK06710 271 SIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTGG- 349 (563)
T ss_pred HHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhhCC-
Confidence 999999999998899999999999999999999999999988754322 23467788889999999999999888764
Q ss_pred hhhhccccccCCcccccCC----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe
Q psy12852 778 TIIEFYGATEGNANLVNMD----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853 (1102)
Q Consensus 778 ~l~n~YG~TE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~ 853 (1102)
.++|.||+||++..+.... ..+++.|.+. ......++|++++.+ ++.|+.||++
T Consensus 350 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~~~~~~~~-----------~~~g~~Gel~---- 407 (563)
T PRK06710 350 KLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPW-------PDTEAMIMSLETGEA-----------LPPGEIGEIV---- 407 (563)
T ss_pred CEecccccccCccccccCcccccccCCccCCCC-------CCCeEEEEECCCCcc-----------CCCCCceEEE----
Confidence 8999999999987654321 1223334332 234455566555543 4777877766
Q ss_pred ecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcc
Q psy12852 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT 933 (1102)
Q Consensus 854 ~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~ 933 (1102)
+.|+ .++.||++++..+...+. ++||+|||+|+++++|.++++||.||+||++|.||+|.|||++|.++|+|.
T Consensus 408 v~g~-~~~~gY~~~~~~~~~~~~------~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~ 480 (563)
T PRK06710 408 VKGP-QIMKGYWNKPEETAAVLQ------DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQ 480 (563)
T ss_pred EecC-ccchhhhCChHHHhhhcc------cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCccee
Confidence 4588 478899988744333322 579999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCC
Q psy12852 934 EFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009 (1102)
Q Consensus 934 ~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~ 1009 (1102)
+++|+++++.. .++...++++ ..+...+.++++++++++||.|++|..|+++++||+|++||++|++|+++....
T Consensus 481 ~~~v~~~~~~~-~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 481 EVVTIGVPDPY-RGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred eEEEEccccCC-cCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhc
Confidence 99999966554 3444444444 333456788999999999999999999999999999999999999999876543
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=551.52 Aligned_cols=492 Identities=20% Similarity=0.221 Sum_probs=362.0
Q ss_pred hHHHHHHHHhhcccCCcccchhhc--------------------------chHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVK--------------------------NLEAQIDEYSNKIARILQDDGFKKGDVLAL 535 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~--------------------------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i 535 (1102)
++..+++. .++++|+++|+... -+|+||.++++++|+.|.+.|+++|++|+|
T Consensus 59 t~~~l~~~--~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 59 TLAALFEQ--SCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CHHHHHHH--HHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 34444444 58999999999311 259999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCC--
Q psy12852 536 MCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPD-- 612 (1102)
Q Consensus 536 ~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 612 (1102)
+++|+++|+++++||+++|+++||+++.++.+++.+++++++++++|++.+....+..+...++.+ .++.+++....
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSD 216 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhh
Confidence 999999999999999999999999999999999999999999999999987777666665555543 44555532210
Q ss_pred ----------CCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc-cCCCCCcEE
Q psy12852 613 ----------LPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-LSLGSGDVI 681 (1102)
Q Consensus 613 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~ 681 (1102)
...+.++........ .......++|+++|+|||||||.||||++||+|+...+...... .+++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~ 295 (696)
T PLN02387 217 SSLSGSSNWTVSSFSEVEKLGKENP-VDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVY 295 (696)
T ss_pred hhhhccCCcEEEEHHHHHHhhccCC-CCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEE
Confidence 122333333221111 11134568999999999999999999999999999887776554 368899999
Q ss_pred EEecCchhhhhHHHHHHhHhhcCceEEEeCCC------C--HhHHHHHHhhcccccccccHHHHHHHHhccCCc------
Q psy12852 682 YNCLPMYHSAGGLIGTIPALILGSSIAIRTKF------S--ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE------ 747 (1102)
Q Consensus 682 l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~------~--~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------ 747 (1102)
++++|++|.++.. ..+..+..|+++.+.... + +..+...++++++|++.++|.+++.+.+.....
T Consensus 296 l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~ 374 (696)
T PLN02387 296 LAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGG 374 (696)
T ss_pred EEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccH
Confidence 9999999999844 444457778887765431 1 234567899999999999999999886431100
Q ss_pred -------------------------------------------cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccc
Q psy12852 748 -------------------------------------------ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 748 -------------------------------------------~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 784 (1102)
...+++.+++||+++++++.+.+...++. .++++||
T Consensus 375 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~-~v~~~YG 453 (696)
T PLN02387 375 LAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGA-PIGQGYG 453 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCC-CeeEeec
Confidence 00357778889999999998776666764 8999999
Q ss_pred cccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeec-CCCCCcCCCCCcccccccCCCCcceEEEEeecCCccc
Q psy12852 785 ATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDL-VENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860 (1102)
Q Consensus 785 ~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~-~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~ 860 (1102)
+||++..++.... ..+++|.+. ..+.+.++|. +.|..+.+ .++..|| |+++|| .+
T Consensus 454 ~TEt~~~~~~~~~~~~~~gsvG~p~-------p~~evkivd~~~~~~~~~~---------~~~p~GE----i~vrGp-~v 512 (696)
T PLN02387 454 LTETCAGATFSEWDDTSVGRVGPPL-------PCCYVKLVSWEEGGYLISD---------KPMPRGE----IVIGGP-SV 512 (696)
T ss_pred hhhcccceeecCcccCCCCccCCCC-------CceEEEEeeccccCcccCC---------CCCCCce----EEeccC-cc
Confidence 9999876654322 233444432 3445555663 32322211 1223455 556799 58
Q ss_pred ccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEE
Q psy12852 861 FYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVY 938 (1102)
Q Consensus 861 ~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv 938 (1102)
+.||+++| .|.+.|..+ .+|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|+
T Consensus 513 ~~GY~~~pe~T~~~f~~d--~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~ 590 (696)
T PLN02387 513 TLGYFKNQEKTDEVYKVD--ERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVH 590 (696)
T ss_pred cchhcCCHHHHhhhhccc--cCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEE
Confidence 99999887 677766432 134579999999999999999999999999998 69999999999999999999999999
Q ss_pred EEEcCCCCCceeEEEEEcCCCc-------------cC----------HHHHHHHH-----HccCCCCCcceEEEEecCcc
Q psy12852 939 GVKVGDLDGRAGMIAIVDTSNQ-------------VD----------LKLLVQGL-----DANLPAYARPLFVRIMKAIE 990 (1102)
Q Consensus 939 ~~~~~~~~~~~~l~~~v~~~~~-------------~~----------~~~l~~~l-----~~~Lp~~~~P~~i~~l~~lP 990 (1102)
+ ++. +..+++++.++.. .+ .+++.+.+ +.+|+.|.+|+.|.++++-.
T Consensus 591 g--~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~ 665 (696)
T PLN02387 591 A--DPF---HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPW 665 (696)
T ss_pred e--cCC---cceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCC
Confidence 7 221 2344555533211 01 11222222 35799999999999887643
Q ss_pred ------CCCCccchhhhhhhcC
Q psy12852 991 ------MTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 991 ------~t~~GKidr~~L~~~~ 1006 (1102)
+||++|+.|+.+.+.+
T Consensus 666 t~~~g~lT~t~K~~R~~i~~~y 687 (696)
T PLN02387 666 TPESGLVTAALKLKREQIRKKF 687 (696)
T ss_pred CCCCCcCChhhhhhhHHHHHHH
Confidence 7888899999998765
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=534.05 Aligned_cols=487 Identities=20% Similarity=0.229 Sum_probs=371.1
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
+..+.|.+ +++++|+++|+.+.+. |.||.++++++|+.|.+.|+++|++|+++++++.++++++|||+++|+++
T Consensus 22 ~~~~~~~~---~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 22 TLPDLLSK---AAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CHHHHHHH---HHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 34445544 4888999999987654 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcch--hHHHHHHhcCCCceEEEecCCC--------------CCCCChhHhhc
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYY--PEIEAIRESIPDVKLFLLDETK--------------PDLPNLSDLMK 621 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 621 (1102)
+|++|..+.+++.+++++++++++++++... .............++++.+... .....+.+...
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 9999999999999999999999999986321 1111111111112222222210 01122233322
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh-----ccCCCCCcEEEEecCchhhhhHHHH
Q psy12852 622 TTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH-----LLSLGSGDVIYNCLPMYHSAGGLIG 696 (1102)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl~~~~~~~~~ 696 (1102)
.... ........++++++++|||||||.||||+++|+++......... .+.....+++++..|++|..++...
T Consensus 179 ~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 256 (541)
T TIGR03205 179 GAAA--PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVI 256 (541)
T ss_pred cCCC--CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence 1111 11113456789999999999999999999999999765442211 1223345789999999999987788
Q ss_pred HHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHh
Q psy12852 697 TIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 697 i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~ 774 (1102)
++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|+..... ....+++.++.||+++++++.+.+.+.+
T Consensus 257 ~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~ 336 (541)
T TIGR03205 257 LLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT 336 (541)
T ss_pred HHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh
Confidence 89999999999998889999999999999999999999999988765322 2234678888999999999999988877
Q ss_pred CcchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEE
Q psy12852 775 HVQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850 (1102)
Q Consensus 775 ~~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~g 850 (1102)
+. ++++.||+||++..++.... .++++|.+.+ +..+.+..+|++ + ++++.|+.||++
T Consensus 337 ~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~-----~~~~~v~~~d~~-~-----------~~~~~g~~Gel~- 397 (541)
T TIGR03205 337 GL-KLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLP-----GIELDVVSLDDP-T-----------KVLPPGEVGELR- 397 (541)
T ss_pred CC-CeecccccccCCcccccCCCCCCCCCCCcceecc-----CceeEEEecCCC-C-----------ccCCCCCeeEEE-
Confidence 64 89999999999877654322 2233443321 123333333432 3 244667777765
Q ss_pred EEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc
Q psy12852 851 EIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929 (1102)
Q Consensus 851 ei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~ 929 (1102)
+.|+ .++.||++++ .+.+.|. ++||+|||+|++++||+++++||.||+||++|+||+|.|||+++.++
T Consensus 398 ---v~~~-~~~~gy~~~~~~~~~~~~-------~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~ 466 (541)
T TIGR03205 398 ---IRGP-NVTRGYWNRPEESAEAFV-------GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEH 466 (541)
T ss_pred ---EecC-CccccccCChhhhHhhhc-------cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhC
Confidence 5588 5888999987 5555553 46899999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEcCCCCCceeEEEEEcC-C-CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 930 LPYTEFTVYGVKVGDLDGRAGMIAIVDT-S-NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 930 ~~V~~a~vv~~~~~~~~~~~~l~~~v~~-~-~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
++|.+++|++++++. .++...++++.. + ...+.++++++++++|+.|++|..|+++++||+|++||++|++|+
T Consensus 467 ~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 467 PGVQEVIVIGIPDQY-RGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred CCeeeEEEEecCCcc-cCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 999999999866543 334444333322 2 235788999999999999999999999999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=533.81 Aligned_cols=443 Identities=15% Similarity=0.152 Sum_probs=325.0
Q ss_pred cCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcc------hhHHHHHHhcCCCceEEEecC-C
Q psy12852 537 CENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY------YPEIEAIRESIPDVKLFLLDE-T 609 (1102)
Q Consensus 537 ~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~-~ 609 (1102)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+....+ .+.+++.. .
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222222111 22222211 0
Q ss_pred C-------CCCCChhHhhccCCC-----CCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCC
Q psy12852 610 K-------PDLPNLSDLMKTTPA-----SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS 677 (1102)
Q Consensus 610 ~-------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 677 (1102)
. .....+.++...... ..........++|+++|+|||||||.||||++||+++..+.......+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 159 (499)
T PLN03051 80 EPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQP 159 (499)
T ss_pred cccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCC
Confidence 0 112234444321110 0011111235689999999999999999999999998876665556778899
Q ss_pred CcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccC----Ccccccc
Q psy12852 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE----SEADYSH 752 (1102)
Q Consensus 678 ~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~~l 752 (1102)
+|++++.+|++|+.+ +..++.+|..|+++++.+. +++..+++.|+++++|++.++|++++.|+.... .....++
T Consensus 160 ~d~~l~~~pl~h~~g-~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~L 238 (499)
T PLN03051 160 GDVVCWPTNLGWMMG-PWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKL 238 (499)
T ss_pred CCEEEEccCcceeee-hHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhh
Confidence 999999999999998 6688999999999999875 788999999999999999999999999877542 1233577
Q ss_pred ceeeeeccCCCHHHHHHHHHHhC-cchhhhccccccCCcccccC-C---CCCCcccccCCCCCCcCCCeeeEEeecCCCC
Q psy12852 753 QVVKMIGVGMRGDIWAKFVKRFH-VQTIIEFYGATEGNANLVNM-D---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQ 827 (1102)
Q Consensus 753 ~~~~~~Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~-~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~ 827 (1102)
|.+++||+++++++.+++.+.++ +..++|.||+||++..++.. . ...+++|.+. ....+.++|++ |.
T Consensus 239 r~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~ivd~~-g~ 310 (499)
T PLN03051 239 RVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTAS-------LGTRFVLLNDN-GV 310 (499)
T ss_pred eEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCC-------CCceEEEECCC-CC
Confidence 88888999999999987766332 24799999999987543221 1 1223344432 33455566654 44
Q ss_pred CcCCCCCcccccccCC--CCcceEEEEeecCCcc-cccccCCchHHHHHHhh-cccC--CCCeEEEecceeEEecCccEE
Q psy12852 828 PIRDPKTGLCIRCKYN--QPGMIIGEIKQSDPSR-HFYGYADKKESQKKILE-NVFK--PGDKYFLSGDMMVMDELGYLY 901 (1102)
Q Consensus 828 ~i~~~~~~~~~~~~~g--~~Gel~gei~~~G~~~-~~~gY~~~~~t~~~f~~-~~~~--~g~~~yrTGDl~~~~~dG~l~ 901 (1102)
++ +.| ++||+ +++||.. .+.||+|++. ++.|+. .++. .+.+||+|||+|++|+||+|+
T Consensus 311 ~~-----------~~g~~~~Gel----~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~ 374 (499)
T PLN03051 311 PY-----------PDDQPCVGEV----ALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFC 374 (499)
T ss_pred CC-----------CCCCCcceEE----EEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEE
Confidence 33 444 35554 4668842 2579998764 334432 1221 356799999999999999999
Q ss_pred EEccCCCeEEeCceeechHHHHHHHHh-cCCcceeEEEEEEcCCCCCceeEEEEE---c--CCC-ccCHHHHHHHH----
Q psy12852 902 FKDRTGDTYRWKGENVSTMEVEATISK-YLPYTEFTVYGVKVGDLDGRAGMIAIV---D--TSN-QVDLKLLVQGL---- 970 (1102)
Q Consensus 902 ~~GR~dd~Iki~G~ri~~~eIE~~l~~-~~~V~~a~vv~~~~~~~~~~~~l~~~v---~--~~~-~~~~~~l~~~l---- 970 (1102)
|+||+||+||++|+||+|.|||++|.+ ||+|.+|+|++++++. .+...+++++ + ++. ..+.++|+++|
T Consensus 375 ~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~-~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l 453 (499)
T PLN03051 375 VQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPD-GGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAI 453 (499)
T ss_pred EEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCC-CCceEEEEEEEcceecccccccchHHHHHHHHHHH
Confidence 999999999999999999999999996 9999999999977664 3434455554 2 222 35667776655
Q ss_pred HccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 971 DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 971 ~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+++|+.|+.|..|+++++||+|++|||||++|++..
T Consensus 454 ~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~ 489 (499)
T PLN03051 454 QTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQL 489 (499)
T ss_pred HhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHH
Confidence 566888777778999999999999999999998753
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-56 Score=534.29 Aligned_cols=470 Identities=18% Similarity=0.210 Sum_probs=375.1
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+.+|+++|+...+. |+||.+++.++|+.|.+.|+++|++|+|+++++.++++++|||+++|++++|+++.++.++
T Consensus 9 ~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~ 88 (502)
T TIGR01734 9 FAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSER 88 (502)
T ss_pred HHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHH
Confidence 4788999999988664 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.++++.+++++++++........ ...++.++. ......... .........++++++++|||||
T Consensus 89 ~~~~~~~~~~~~ii~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~il~TSGT 152 (502)
T TIGR01734 89 IEMIIEAAGPELVIHTAELSIDAV-------GTQIITLSA-------LEQAETSGG--PVSFDHAVKGDDNYYIIYTSGS 152 (502)
T ss_pred HHHHHHhcCCCEEEeccccccccc-------CCceEEchH-------hhhhhhhcC--CccccccCCCCCeEEEEECCCC
Confidence 999999999999999876543221 122222221 111111111 1111134567899999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhhc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKY 725 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~~ 725 (1102)
||.||||+++|+++...+.+....+++..+++++...|++|..+ +..++.++..|+++++.++ .++..+++.+.++
T Consensus 153 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~ 231 (502)
T TIGR01734 153 TGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLS-VMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKT 231 (502)
T ss_pred CCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechh-HHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHc
Confidence 99999999999999999888888899999999999999999987 7889999999999999875 5889999999999
Q ss_pred ccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC------
Q psy12852 726 KCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN------ 797 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~------ 797 (1102)
++|.+.++|+++..++.... .....+++.++++|++++.++.+++.+.+++..+++.||+||++..++....
T Consensus 232 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~ 311 (502)
T TIGR01734 232 GLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILD 311 (502)
T ss_pred CCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccc
Confidence 99999999999988765432 2234567778889999999999999999987799999999998765442211
Q ss_pred --CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHH
Q psy12852 798 --TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKI 874 (1102)
Q Consensus 798 --~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f 874 (1102)
....+|.+. .++.+.++|++ +. +++.|+.||++ +.|+ .++.||++++ .+.+.|
T Consensus 312 ~~~~~~vg~~~-------~~~~~~i~~~~-~~-----------~~~~g~~Gel~----v~g~-~~~~gy~~~~~~~~~~~ 367 (502)
T TIGR01734 312 QYPRLPIGFAK-------PDMNLFIMDEE-GE-----------PLPEGEKGEIV----IVGP-SVSKGYLNNPEKTAEAF 367 (502)
T ss_pred cCCcccccccc-------CCCEEEEECCC-CC-----------CCCCCCeeEEE----Eccc-cccccccCCcccchHhh
Confidence 111222221 23455555544 33 34677777755 5688 4889999886 555555
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
... ++.+||+|||+|+++++ +++++||.||+||++|++|+|.|||+.+.++|+|.+++++++..++..+...++++
T Consensus 368 ~~~---~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v 443 (502)
T TIGR01734 368 FSH---EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAI 443 (502)
T ss_pred eeC---CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEE
Confidence 432 46789999999999976 99999999999999999999999999999999999999998653443444444444
Q ss_pred EcCCCcc----C-HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 955 VDTSNQV----D-LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 955 v~~~~~~----~-~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+...... . .++++++++++||+|++|+.+++++++|+|++||++|++|+++.
T Consensus 444 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~ 500 (502)
T TIGR01734 444 VPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEV 500 (502)
T ss_pred EecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhh
Confidence 4322111 1 26789999999999999999999999999999999999999753
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=535.65 Aligned_cols=489 Identities=19% Similarity=0.244 Sum_probs=376.1
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
..+.|.. +++++|+++|+.+.+. |+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 25 i~~~l~~---~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 101 (557)
T PRK07059 25 LADLLEE---SFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVV 101 (557)
T ss_pred HHHHHHH---HHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEe
Confidence 3444444 4888999999887554 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCC-------------------------CCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET-------------------------KPDL 613 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~ 613 (1102)
|++|.++.+++.+++++++++++++++.....+..+........++..... .+..
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (557)
T PRK07059 102 NVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGH 181 (557)
T ss_pred ccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCCc
Confidence 999999999999999999999999988766555544332211112111100 0111
Q ss_pred CChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc----cCCC---CCcEEEEecC
Q psy12852 614 PNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL----LSLG---SGDVIYNCLP 686 (1102)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~----~~~~---~~d~~l~~~p 686 (1102)
..+.+.......... ......++++++|+|||||||.||||+++|+++..++...... +... .+..++..+|
T Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 260 (557)
T PRK07059 182 VRFNDALAEGARQTF-KPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALP 260 (557)
T ss_pred ccHHHHhhccCCCCC-CCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCC
Confidence 222222222111111 1234678899999999999999999999999998765433222 1111 2356788899
Q ss_pred chhhhhHHHHHHhHhhcCceEEEeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCC
Q psy12852 687 MYHSAGGLIGTIPALILGSSIAIRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMR 763 (1102)
Q Consensus 687 l~~~~~~~~~i~~~l~~G~~lv~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~ 763 (1102)
++|.+++....+.++..|++.++.+. .++..+++.++++++|.+..+|+++..++...... ...++++++.||++++
T Consensus 261 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~ 340 (557)
T PRK07059 261 LYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQ 340 (557)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCC
Confidence 99998877778888999998777664 68899999999999999999999999988765432 2346677788899999
Q ss_pred HHHHHHHHHHhCcchhhhccccccCCcccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccc
Q psy12852 764 GDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839 (1102)
Q Consensus 764 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~ 839 (1102)
+.+.++|.+.++. ++++.||+||++.+++..... +.++|.+. ....+.++|++ |. +
T Consensus 341 ~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~-------~g~~v~i~d~~-~~-----------~ 400 (557)
T PRK07059 341 RPVAERWLEMTGC-PITEGYGLSETSPVATCNPVDATEFSGTIGLPL-------PSTEVSIRDDD-GN-----------D 400 (557)
T ss_pred HHHHHHHHHHhCC-CeeeccccccccchhhcCCCCCCCcCCcccCcc-------CCcEEEEECCC-CC-----------C
Confidence 9999999998864 899999999998876544321 22333331 23444555543 43 3
Q ss_pred ccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeech
Q psy12852 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919 (1102)
Q Consensus 840 ~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~ 919 (1102)
++.|+.||++ +.|+ .++.||++++..+.+.+. .++||+|||+|++++||.++++||+||+||++|++|+|
T Consensus 401 ~~~g~~Gel~----v~g~-~~~~gY~~~~~~~~~~~~-----~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p 470 (557)
T PRK07059 401 LPLGEPGEIC----IRGP-QVMAGYWNRPDETAKVMT-----ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYP 470 (557)
T ss_pred CCCCCceEEE----EeCC-ccchhhhcCHHHHhhhcc-----cCCceecCcEEEEcCCCcEEEecccccceEECCEEEcH
Confidence 4778888766 4588 588999998744433322 26899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchh
Q psy12852 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999 (1102)
Q Consensus 920 ~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr 999 (1102)
.|||++|.++++|.+++|++++... .++..+++++..+...+.++++++++++|+.|++|..+++++++|+|++||++|
T Consensus 471 ~~iE~~l~~~~~V~~~~v~~~~~~~-~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r 549 (557)
T PRK07059 471 NEIEEVVASHPGVLEVAAVGVPDEH-SGEAVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILR 549 (557)
T ss_pred HHHHHHHHhCCceeEEEEEecccCC-CCeeEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeH
Confidence 9999999999999999999866554 344444444444445778899999999999999999999999999999999999
Q ss_pred hhhhhc
Q psy12852 1000 IQLQNE 1005 (1102)
Q Consensus 1000 ~~L~~~ 1005 (1102)
+.|+++
T Consensus 550 ~~L~~~ 555 (557)
T PRK07059 550 RELRDG 555 (557)
T ss_pred HHHHhh
Confidence 999865
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=534.23 Aligned_cols=488 Identities=20% Similarity=0.279 Sum_probs=381.7
Q ss_pred HHHHHHHHhhcccCCcccchhhcc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
+..++++ +++++|+++|+.+.+ +|+||.++++++|++|++.|+++|++|+++++|+++++++++||+++|++++
T Consensus 25 l~~~~~~--~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 102 (547)
T PRK06087 25 LADYWQQ--TARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSV 102 (547)
T ss_pred HHHHHHH--HHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence 4444444 578899999998765 2999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcc-----hhHHHHHHhcCCCc-eEEEecCCC--CCCCChhHhhccCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALY-----YPEIEAIRESIPDV-KLFLLDETK--PDLPNLSDLMKTTPASEVKP 630 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 630 (1102)
|++|.++.+++.++++++++++++++... .+.+......++.. .++.++... .....+.++........ .
T Consensus 103 ~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 180 (547)
T PRK06087 103 PLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLT--T 180 (547)
T ss_pred ccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCccc--C
Confidence 99999999999999999999999997642 22333333333332 344443321 11223334333222111 1
Q ss_pred CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe
Q psy12852 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR 710 (1102)
Q Consensus 631 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~ 710 (1102)
.....++++++|+|||||||.||||+++|+++..........++++++|++++..|++|..++...++.++..|+++++.
T Consensus 181 ~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~ 260 (547)
T PRK06087 181 AITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLL 260 (547)
T ss_pred CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEec
Confidence 12456789999999999999999999999999888887788888999999999999999999778899999999999999
Q ss_pred CCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccC
Q psy12852 711 TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEG 788 (1102)
Q Consensus 711 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 788 (1102)
+.+++..+++.|+++++|++..+|+++..++..... .....++.+++||+++++++.+.+.+. + +++++.||+||+
T Consensus 261 ~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~-~~l~~~YG~TE~ 338 (547)
T PRK06087 261 DIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR-G-IKLLSVYGSTES 338 (547)
T ss_pred CCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc-C-CcEEEEeccccc
Confidence 999999999999999999998877766666554322 233467888899999999999887764 4 589999999999
Q ss_pred CcccccCCCC-----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 789 NANLVNMDNT-----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 789 ~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
+..+...... ..+.|.+. ..+.+.++|++ +. +++.|+.||++ +.|+ .++.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~g~-~~~~g 394 (547)
T PRK06087 339 SPHAVVNLDDPLSRFMHTDGYAA-------AGVEIKVVDEA-RK-----------TLPPGCEGEEA----SRGP-NVFMG 394 (547)
T ss_pred CCccccCCCcchhhcCCcCCccC-------CCceEEEEcCC-CC-----------CCcCCCcceEE----Eecc-ccccc
Confidence 8765432211 11233332 22344445543 32 45778888876 4588 58899
Q ss_pred cCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEc
Q psy12852 864 YADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942 (1102)
Q Consensus 864 Y~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~ 942 (1102)
|++++ .+...|. .++||+|||+|+++++|+++++||.||+||++|.+|+|.+||++|.++|+|.+++|++.++
T Consensus 395 y~~~~~~~~~~~~------~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~ 468 (547)
T PRK06087 395 YLDEPELTARALD------EEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPD 468 (547)
T ss_pred ccCCHHHHHHHhC------CCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCC
Confidence 99987 4444442 2679999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCCceeEEEEEcC--CCccCHHHHHHHHH-ccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 943 GDLDGRAGMIAIVDT--SNQVDLKLLVQGLD-ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 943 ~~~~~~~~l~~~v~~--~~~~~~~~l~~~l~-~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
+. .++...++++.. ....+.+++.+++. +.||.|++|..|.++++||+|+|||++|++|+++..
T Consensus 469 ~~-~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~ 535 (547)
T PRK06087 469 ER-LGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIM 535 (547)
T ss_pred CC-cCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHH
Confidence 43 344444444422 24467788999885 689999999999999999999999999999987643
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=533.49 Aligned_cols=466 Identities=20% Similarity=0.219 Sum_probs=367.4
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
.....+.+ ++..+|+++|+.+++. |+||.++++++|++|++.|+++|++|+++++|++++++++|||+++|+++
T Consensus 36 ~~~~~~~~---~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 36 NPYTLLAV---TAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cHHHHHHH---HHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 34444544 4788999999987654 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
+|+++.++.+++.+++++++++++++++...+.+..... .++.++... ... . . ... .+..++
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~~------~~~-~--~-~~~---~p~~~~ 174 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD-----AVAVIDPAT------AGA-E--E-SGG---RPAVAA 174 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc-----ceEEeccch------hhh-h--c-CCC---CCCCCC
Confidence 999999999999999999999999999876655443221 222222110 000 0 0 000 112345
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHh--hhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLG--GQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
+.++|+|||||||+||||+++|...... .......+++.++|+++..+|++|..+ ...++.++..|+++++...+++
T Consensus 175 ~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g-~~~~~~~l~~G~~~~~~~~~~~ 253 (516)
T PRK13383 175 PGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLG-LGMLMLTIALGGTVLTHRHFDA 253 (516)
T ss_pred CCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhh-HHHHHHHHhcCCEEEECCCCCH
Confidence 6789999999999999999999843222 122334567889999999999999998 5678889999999999888999
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
..+++.++++++|.+.++|+++..|+..... ....+++.+++||+++++++.++|.+.++. .+++.||+||++..
T Consensus 254 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~tE~~~~ 332 (516)
T PRK13383 254 EAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGD-ILYNGYGSTEVGIG 332 (516)
T ss_pred HHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCc-hhhhcccccccccc
Confidence 9999999999999999999999998765431 224567888999999999999999999976 89999999999866
Q ss_pred cccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc
Q psy12852 792 LVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867 (1102)
Q Consensus 792 ~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~ 867 (1102)
+..... ..+++|.+. ....+.++|++ |. +++.|+.||++ +.|+ .++.||++.
T Consensus 333 ~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~g~-~~~~~Y~~~ 388 (516)
T PRK13383 333 ALATPADLRDAPETVGKPV-------AGCPVRILDRN-NR-----------PVGPRVTGRIF----VGGE-LAGTRYTDG 388 (516)
T ss_pred eeccccccccCCCcccCCC-------CCcEEEEECCC-CC-----------CCCCCCceEEE----EecC-cccccccCC
Confidence 543221 123344332 23445555543 43 34677777765 5588 478899887
Q ss_pred hHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCC
Q psy12852 868 KESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947 (1102)
Q Consensus 868 ~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~ 947 (1102)
+. . .+ .++||+|||+|+++++|++++.||+||+||++|++|+|.|||.+|.++|+|.+++|+++++.. .+
T Consensus 389 ~~--~-~~------~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~-~g 458 (516)
T PRK13383 389 GG--K-AV------VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDER-FG 458 (516)
T ss_pred ch--h-he------ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccc-cC
Confidence 53 1 11 168999999999999999999999999999999999999999999999999999999866543 33
Q ss_pred ceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhh
Q psy12852 948 RAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 948 ~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~ 1003 (1102)
+...++++ ......+.++++++++++|+.|++|..|+++++||+|++||++|++|+
T Consensus 459 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 459 HRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred ceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 44333333 333346678999999999999999999999999999999999999985
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=532.28 Aligned_cols=485 Identities=19% Similarity=0.226 Sum_probs=374.3
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+++|+++|+.+.+. |.||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 12 ~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~ 91 (533)
T PRK07798 12 VADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDE 91 (533)
T ss_pred HHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHH
Confidence 5899999999988665 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCC-----CCCChhHhhccCCCCCCCCCCCCCCCCeEEE
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKP-----DLPNLSDLMKTTPASEVKPSEPLQTSDSLLY 642 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 642 (1102)
+.++++++++++++++....+.+.++....+.. .++.++.... +...+.+.......... ......+.++|
T Consensus 92 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i 168 (533)
T PRK07798 92 LRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERD---FGERSPDDLYL 168 (533)
T ss_pred HHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCC---CCCCCCCceEE
Confidence 999999999999999988777766665444443 3444443221 12244444433221111 11223355799
Q ss_pred EECCCCCCCCceEEeccHHHHHhhhhhhhc---------cCC------CCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 643 IYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---------LSL------GSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 643 i~TSGSTG~PKgV~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
+|||||||.||||+++|+++.......... +.+ ..+++++..+|++|..+ .+.++.+++.|+++
T Consensus 169 ~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~-~~~~~~~l~~G~~~ 247 (533)
T PRK07798 169 LYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAG-QWAAFAALFSGQTV 247 (533)
T ss_pred EECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhh-HHHHHHHHhcCceE
Confidence 999999999999999999997654432211 112 57789999999999998 67899999999999
Q ss_pred EEeC--CCCHhHHHHHHhhcccccccccHHHHH-HHHhcc---CCccccccceeeeeccCCCHHHHHHHHHHhCcchhhh
Q psy12852 708 AIRT--KFSASNYFRDCAKYKCNAGIYIGEMCR-YLLASK---ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIE 781 (1102)
Q Consensus 708 v~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~~~-~l~~~~---~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n 781 (1102)
++.+ .+++..+++.++++++|.+.++|+.+. .+.... .......++.+++||+++++++.++|.+.+++..+++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~ 327 (533)
T PRK07798 248 VLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTD 327 (533)
T ss_pred EEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEe
Confidence 9999 689999999999999999999986543 232221 1223346778888999999999999999987678999
Q ss_pred ccccccCCcccccCCC-CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCC--cceEEEEeecCCc
Q psy12852 782 FYGATEGNANLVNMDN-TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQP--GMIIGEIKQSDPS 858 (1102)
Q Consensus 782 ~YG~TE~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~--Gel~gei~~~G~~ 858 (1102)
.||+||++.+.+.... .....|.. .+. ....+.++|++ |. +++.|.. |+++ . |+
T Consensus 328 ~YG~tE~~~~~~~~~~~~~~~~g~~---~~~--~~~~~~i~~~~-~~-----------~~~~g~~~~g~l~----~-~~- 384 (533)
T PRK07798 328 SIGSSETGFGGSGTVAKGAVHTGGP---RFT--IGPRTVVLDED-GN-----------PVEPGSGEIGWIA----R-RG- 384 (533)
T ss_pred eecccccccccccCCCCCCccCCCC---ccC--CCceEEEECCC-CC-----------CCCCCCCCeeEEE----e-ec-
Confidence 9999999765543321 11112210 111 23345555554 33 3356666 4433 2 44
Q ss_pred ccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEE
Q psy12852 859 RHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937 (1102)
Q Consensus 859 ~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~v 937 (1102)
.++.||++++ .+.++|.. .++.+||+|||+|++++||++++.||.|++||++|++|+|.|||+++.++|+|.+++|
T Consensus 385 ~~~~gy~~~~~~t~~~f~~---~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v 461 (533)
T PRK07798 385 HIPLGYYKDPEKTAETFPT---IDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALV 461 (533)
T ss_pred CccccccCChhhhHHhhcc---CCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEE
Confidence 3677999887 56666653 2457899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 938 YGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 938 v~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
++++.+. .++...++++ ..+...+.++++++++++||.|++|..+++++++|+|++||+||+.|+++..
T Consensus 462 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 462 VGVPDER-WGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred EeccCcc-cCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhc
Confidence 9865443 3343444333 3333568899999999999999999999999999999999999999998753
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=542.02 Aligned_cols=488 Identities=17% Similarity=0.184 Sum_probs=360.4
Q ss_pred hhhHHHHHHHHhhcccCCcccchhhc--------chHHHHHHHHHHHHHHHHHC---CCCCC-----------CEEEEEc
Q psy12852 480 DVTYSRFKQEASNARSTNDAAATTVK--------NLEAQIDEYSNKIARILQDD---GFKKG-----------DVLALMC 537 (1102)
Q Consensus 480 ~~~~~~~~~~~~~a~~~P~~~Av~~~--------~~Y~eL~~~a~~lA~~L~~~---gv~~g-----------~~V~i~~ 537 (1102)
.+..+.|.+ +++++|+++|+.+. -+|+||.++++++|+.|.+. |+++| ++|+|++
T Consensus 61 ~~l~~~l~~---~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~ 137 (746)
T PTZ00342 61 KHIMKLLLE---KYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYG 137 (746)
T ss_pred chHHHHHHH---HHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEc
Confidence 344455544 58899999999862 12999999999999999974 99998 9999999
Q ss_pred CCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCC----
Q psy12852 538 ENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPD---- 612 (1102)
Q Consensus 538 ~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---- 612 (1102)
+|+++|+++.+||+++|++.||+++.++.+++.++++++++++++++.+..+.+......++.+ .+++++.....
T Consensus 138 ~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~ 217 (746)
T PTZ00342 138 SNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEIN 217 (746)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCcccccc
Confidence 9999999999999999999999999999999999999999999999877777666665556654 34555431100
Q ss_pred ----------------C-------------------------------CChhHhhccCC---------------CCCCCC
Q psy12852 613 ----------------L-------------------------------PNLSDLMKTTP---------------ASEVKP 630 (1102)
Q Consensus 613 ----------------~-------------------------------~~~~~~~~~~~---------------~~~~~~ 630 (1102)
. ..+.++..... ......
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (746)
T PTZ00342 218 INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYK 297 (746)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCC
Confidence 0 00011110000 000111
Q ss_pred CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhcc--CCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEE
Q psy12852 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL--SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 631 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv 708 (1102)
.....++|+|+|+|||||||.||||++||+|+.+.+....... .....|++++++|++|.++. ...+.+++.|++++
T Consensus 298 ~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~-~~~~~~l~~G~~i~ 376 (746)
T PTZ00342 298 IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYER-VIAYLSFMLGGTIN 376 (746)
T ss_pred CCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHH-HHHHHHHHcCCEEE
Confidence 2345789999999999999999999999999998876544321 23356899999999999984 45677899999999
Q ss_pred EeCCCCHhHHHHHHhhcccccccccHHHHHHHHhc--------cCCc---------------------------------
Q psy12852 709 IRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS--------KESE--------------------------------- 747 (1102)
Q Consensus 709 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~--------~~~~--------------------------------- 747 (1102)
+.+. ++..+.+.|+++++|+++++|.+++.|... +...
T Consensus 377 ~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~ki 455 (746)
T PTZ00342 377 IWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKI 455 (746)
T ss_pred EeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 9875 899999999999999999999999888652 1000
Q ss_pred ---cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEe
Q psy12852 748 ---ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQF 821 (1102)
Q Consensus 748 ---~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~ 821 (1102)
...+++.+++||+++++++.+.|...++. .++++||+||++..++.... ..+++|.+. ...+.+.++
T Consensus 456 r~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~-~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~------~pg~e~ki~ 528 (746)
T PTZ00342 456 KDKVNPNLEVILNGGGKLSPKIAEELSVLLNV-NYYQGYGLTETTGPIFVQHADDNNTESIGGPI------SPNTKYKVR 528 (746)
T ss_pred HHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCC-CEEEeeccCcccceeeeccCCCCCcccccCcC------CCcEEEEEe
Confidence 01357788899999999999999988865 89999999999865543322 233444431 022344444
Q ss_pred ecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccE
Q psy12852 822 DLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYL 900 (1102)
Q Consensus 822 d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l 900 (1102)
|.+++... +.+..|| |+++|| .++.||+++| .|.+.|.. +|||+|||+|++|+||+|
T Consensus 529 d~~~~~~~-----------~~~~~GE----l~vrGp-~v~~GY~~~pe~T~~~f~~------dGW~~TGDig~~d~dG~l 586 (746)
T PTZ00342 529 TWETYKAT-----------DTLPKGE----LLIKSD-SIFSGYFLEKEQTKNAFTE------DGYFKTGDIVQINKNGSL 586 (746)
T ss_pred cccccccC-----------CCCCceE----EEEecC-cccccccCChhhhhhhcCc------CCcccCCcEEEECCCCeE
Confidence 43322211 1223455 556799 5889999887 66666642 689999999999999999
Q ss_pred EEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC----------------cc--
Q psy12852 901 YFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN----------------QV-- 961 (1102)
Q Consensus 901 ~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~----------------~~-- 961 (1102)
+|+||+||+||+ +|++|+|.+||+++.+||.|.+|+|++ +. ....++++++++. .+
T Consensus 587 ~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG--~~---~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~ 661 (746)
T PTZ00342 587 TFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYG--DD---SMDGPLAIISVDKYLLFKCLKDDNMLESTGINE 661 (746)
T ss_pred EEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEc--cC---CccccEEEEECCHHHHHHHHHhcCCccccccCc
Confidence 999999999996 799999999999999999999999997 21 1224455543321 00
Q ss_pred -CHH-----------HHHH----HH-----HccCCCCCcceEEEEecC-c----cCCCCccchhhhhhhcC
Q psy12852 962 -DLK-----------LLVQ----GL-----DANLPAYARPLFVRIMKA-I----EMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 962 -~~~-----------~l~~----~l-----~~~Lp~~~~P~~i~~l~~-l----P~t~~GKidr~~L~~~~ 1006 (1102)
+.. ++++ .+ +..|+.|.+++.|..+.+ | -+||+.|+.|+.+.+.+
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y 732 (746)
T PTZ00342 662 KNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDY 732 (746)
T ss_pred ccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHH
Confidence 110 1122 22 236999999999888754 3 29999999999998754
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-56 Score=585.00 Aligned_cols=485 Identities=16% Similarity=0.215 Sum_probs=374.9
Q ss_pred hhhHHHHHHHHhhcccCC-cccchhhcc----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 480 DVTYSRFKQEASNARSTN-DAAATTVKN----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 480 ~~~~~~~~~~~~~a~~~P-~~~Av~~~~----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
.+..+.+.+. ++++| ++.|+.+.+ +|+||+++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus 631 ~~~~~~l~~~---~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 631 RTLFEALIEA---AKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred CCHHHHHHHH---HHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 3456666665 56664 678876532 399999999999999975 99999999999999999999999999999
Q ss_pred ceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHH--HHHHhcCC-CceEEEecCCCCCCCChh---HhhccCCCCCC
Q psy12852 555 VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEI--EAIRESIP-DVKLFLLDETKPDLPNLS---DLMKTTPASEV 628 (1102)
Q Consensus 555 ~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 628 (1102)
++++|+||.++.+++.+++++++++++++++...+.. .......+ ..+++.+++......... +....... .
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~ 784 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFP--L 784 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCC--c
Confidence 9999999999999999999999999999987654321 11111222 244555543211111111 11111111 1
Q ss_pred CCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEE
Q psy12852 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 629 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv 708 (1102)
...+...++|+++|+|||||||.||||+++|+++.+++......++++++|++++.+|++|..++...++.++..|++++
T Consensus 785 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~ 864 (1140)
T PRK06814 785 VYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVF 864 (1140)
T ss_pred cccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEE
Confidence 11124578999999999999999999999999999988888888999999999999999999997788999999999999
Q ss_pred EeCC-CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccccc
Q psy12852 709 IRTK-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787 (1102)
Q Consensus 709 ~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 787 (1102)
+.++ .+...+.+.++++++|++..+|++++.+..........++|.+++|||++++++.+.|.+.++. +++|.||+||
T Consensus 865 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE 943 (1140)
T PRK06814 865 LYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGI-RILEGYGVTE 943 (1140)
T ss_pred EecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcccccccceeEEEEcCCcCCHHHHHHHHHHhCC-cEEecccccc
Confidence 9875 5677888999999999999999999988765444445678888999999999999999998865 8999999999
Q ss_pred CCcccccCC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccccc
Q psy12852 788 GNANLVNMD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864 (1102)
Q Consensus 788 ~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY 864 (1102)
++..++... ...+++|++.++ . .....+.. +.|+.|| ++++|+ .++.||
T Consensus 944 ~~~~~~~~~~~~~~~~~vG~p~~g-----~--~~~~~~~~----------------~~~~~Ge----l~v~g~-~~~~gY 995 (1140)
T PRK06814 944 TAPVIALNTPMHNKAGTVGRLLPG-----I--EYRLEPVP----------------GIDEGGR----LFVRGP-NVMLGY 995 (1140)
T ss_pred ccceEEecCCCCCCCCcCCccCCC-----C--eEEEeecC----------------CCCCceE----EEEeCC-Ccchhh
Confidence 987665332 123344443221 1 11111110 1244555 556788 588999
Q ss_pred CCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 865 ~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
++++... .+ . ..+++||+|||+|++|+||+++++||.||+||++|+||+|.|||+++.+++++.+++|++++++.
T Consensus 996 ~~~~~~~-~~-~---~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~ 1070 (1140)
T PRK06814 996 LRAENPG-VL-E---PPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDAR 1070 (1140)
T ss_pred cCCCCCC-cc-c---cCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCC
Confidence 9875311 11 1 12478999999999999999999999999999999999999999999999999999999866544
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
.++ .+++++. ..+.+.+++++++++ ++|+|++|..+++++++|+|+|||+||++|+++..
T Consensus 1071 -~g~-~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 1131 (1140)
T PRK06814 1071 -KGE-RIILLTT-ASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAE 1131 (1140)
T ss_pred -CCc-eEEEEEc-CCCcCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHH
Confidence 333 3445543 445678899999986 49999999999999999999999999999998643
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-55 Score=525.72 Aligned_cols=486 Identities=17% Similarity=0.250 Sum_probs=382.7
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
.+.+.+. +++.+|+++|+.+... |.||.++++++|++|.+.|+++|++|+++++++.+++++++||+++|++++|
T Consensus 7 ~~~~~~~--~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~ 84 (508)
T TIGR02262 7 EDLLDRN--VVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA 84 (508)
T ss_pred HHHHHHH--HhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence 4445444 4677999999987655 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSD 638 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1102)
+++.++.+++.++++.+++++++++....+.+......++.. .++..+........+.+......... ......+++
T Consensus 85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 162 (508)
T TIGR02262 85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQF--KPAATQADD 162 (508)
T ss_pred ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCCCcc--CCCCCCCCC
Confidence 999999999999999999999999988777666655444442 23333322222233433333222111 113455789
Q ss_pred eEEEEECCCCCCCCceEEeccHHHHHhhhh-hhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC-CCHh
Q psy12852 639 SLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK-FSAS 716 (1102)
Q Consensus 639 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~-~~~~ 716 (1102)
+++++|||||||.||||+++|+++...+.. ....++++++|+++...|++|+.++...++.++..|+++++.++ +++.
T Consensus 163 ~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 242 (508)
T TIGR02262 163 PAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD 242 (508)
T ss_pred cEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHH
Confidence 999999999999999999999999887655 45667899999999999999999866778889999999999875 6899
Q ss_pred HHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc
Q psy12852 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN 794 (1102)
Q Consensus 717 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 794 (1102)
.+++.|+++++|.+.++|+++..++..... .....++.++++|+++++++.+.|.+.++. ++++.||+||++.+++.
T Consensus 243 ~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~ 321 (508)
T TIGR02262 243 AVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV-DIVDGIGSTEMLHIFLS 321 (508)
T ss_pred HHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCC-chhhCccccccCceeec
Confidence 999999999999999999999888765432 223466777889999999999999999875 89999999999865543
Q ss_pred CCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HH
Q psy12852 795 MDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ES 870 (1102)
Q Consensus 795 ~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t 870 (1102)
... ..+..|.+. ....+.++| +++. +++.|.+||++ +.|+. ++.||++++ .+
T Consensus 322 ~~~~~~~~~~~G~~~-------~g~~v~i~d-~~~~-----------~~~~g~~Gel~----i~~~~-~~~gY~~~~~~~ 377 (508)
T TIGR02262 322 NLPGDVRYGTSGKPV-------PGYRLRLVG-DGGQ-----------DVAAGEPGELL----ISGPS-SATMYWNNRAKT 377 (508)
T ss_pred CCccCCCCCCcCCCC-------CCcEEEEEC-CCCC-----------CCCCCCeeEEE----EecCc-cccccCCCHHHh
Confidence 221 122333321 233444555 4343 34777777766 45774 678999886 44
Q ss_pred HHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCcee
Q psy12852 871 QKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG 950 (1102)
Q Consensus 871 ~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~ 950 (1102)
...| . ++||+|||+++++++|.+++.||.||+||++|.+|+|.+||++|.++++|.++++++.++.. .....
T Consensus 378 ~~~~-~------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~-~~~~~ 449 (508)
T TIGR02262 378 RDTF-Q------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDED-GLIKP 449 (508)
T ss_pred Hhhh-h------cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccC-CCcee
Confidence 4444 2 57999999999999999999999999999999999999999999999999999999855443 22333
Q ss_pred EEEEEcCC-C---ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 951 MIAIVDTS-N---QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 951 l~~~v~~~-~---~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
.++++... . ....++++++++++||.|++|..+++++++|+|++||++|++|+++
T Consensus 450 ~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 450 KAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred EEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 33333222 1 2346789999999999999999999999999999999999999764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=534.81 Aligned_cols=489 Identities=20% Similarity=0.254 Sum_probs=378.8
Q ss_pred hHHHHHHHHhhcccCCcccchhhc--c-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVK--N-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~--~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
++..+++. +|+++|+++++... + +|+||.++++++|++|++.|+++|++|+++++|+++++++++||+++|
T Consensus 11 ~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G 88 (542)
T PRK06018 11 LCHRIIDH--AARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIG 88 (542)
T ss_pred CHHHHHHH--HHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcC
Confidence 45555555 68899999998741 2 399999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceE-EEecCCC-------CCCCChhHhhccCCCC
Q psy12852 555 VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETK-------PDLPNLSDLMKTTPAS 626 (1102)
Q Consensus 555 ~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~ 626 (1102)
++++|++|.++.+++.++++.+++++++++....+.+.+.....+.... +.+.+.. +....+.++.......
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (542)
T PRK06018 89 AICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGD 168 (542)
T ss_pred eEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCcc
Confidence 9999999999999999999999999999999887777666555554332 2222111 1112333333322111
Q ss_pred CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHH-H-hhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL-L-GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 627 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~-~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
.......++++++|+|||||||.||||++||++.. + ........+++..+|+++...|++|..+ ....+.++..|
T Consensus 169 --~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~-~~~~~~~~~~g 245 (542)
T PRK06018 169 --FAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANS-WGIAFSAPSMG 245 (542)
T ss_pred --cCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhh-hHHHHhhhhcC
Confidence 11134566789999999999999999999999743 2 2334456778899999999999999887 55567889999
Q ss_pred ceEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhh
Q psy12852 705 SSIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIE 781 (1102)
Q Consensus 705 ~~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n 781 (1102)
+++++.. .+++..+++.++++++|++.++|+++..|...... .....++.++.+|+++++++.++|.+ ++. .+++
T Consensus 246 ~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~-~~~~ 323 (542)
T PRK06018 246 TKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-MGV-EVRH 323 (542)
T ss_pred ceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-hCC-CeEe
Confidence 9998875 47899999999999999999999999998765432 23356788889999999999999998 654 8999
Q ss_pred ccccccCCcccccCCCCC--------------CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcc
Q psy12852 782 FYGATEGNANLVNMDNTE--------------GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847 (1102)
Q Consensus 782 ~YG~TE~~~~~~~~~~~~--------------~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Ge 847 (1102)
.||+||++.+++...... ...|.+ . ....+.++|++ |..+ +. .|+
T Consensus 324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-----~--~g~~i~v~d~~-~~~~-----------~~--~~~ 382 (542)
T PRK06018 324 AWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYP-----P--FGVEMKITDDA-GKEL-----------PW--DGK 382 (542)
T ss_pred eecccccCcccccccCccccccCCchhhhhccccCCCC-----C--CCcEEEEECCC-CCCC-----------CC--CCC
Confidence 999999987665332111 112222 1 23345555543 4433 21 223
Q ss_pred eEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHH
Q psy12852 848 IIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATIS 927 (1102)
Q Consensus 848 l~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~ 927 (1102)
..||+++.|+ .++.||++.. .. . ...++||+|||+|+++++|.+++.||.||+||++|++|+|.|||..+.
T Consensus 383 ~~Gel~i~g~-~~~~gy~~~~--~~-~-----~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~ 453 (542)
T PRK06018 383 TFGRLKVRGP-AVAAAYYRVD--GE-I-----LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV 453 (542)
T ss_pred ceeEEEEecC-CcchhhhcCc--cc-E-----ecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH
Confidence 3455667788 4788999842 11 1 124789999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 928 KYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 928 ~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++|+|.+++|++++++.. ++...++++ .++...+.++++++++++|+.|++|..++++++||+|++||++|++|++..
T Consensus 454 ~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~ 532 (542)
T PRK06018 454 GHPKVAEAAVIGVYHPKW-DERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQF 532 (542)
T ss_pred hCCcceeEEEEeccCCCc-CceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHH
Confidence 999999999999766543 333333333 445567788999999999999999999999999999999999999999875
Q ss_pred CC
Q psy12852 1007 FD 1008 (1102)
Q Consensus 1007 ~~ 1008 (1102)
.+
T Consensus 533 ~~ 534 (542)
T PRK06018 533 KD 534 (542)
T ss_pred hc
Confidence 43
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=536.66 Aligned_cols=482 Identities=20% Similarity=0.262 Sum_probs=374.7
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+++++|+++|+++.+. |+||.++++++|+.|. +.|+++|++|++++++++++++++|||+++|++++|++|.++.+
T Consensus 34 ~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~ 113 (560)
T PRK08751 34 SVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPR 113 (560)
T ss_pred HHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHH
Confidence 5888999999987654 9999999999999997 68999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC--------------------------CCCCChhHhhc
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK--------------------------PDLPNLSDLMK 621 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~ 621 (1102)
++.+++++++++++++++.....+.......+...++..+... +....+.+...
T Consensus 114 ~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (560)
T PRK08751 114 ELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALA 193 (560)
T ss_pred HHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHh
Confidence 9999999999999999987766555544333322232221000 00111122211
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC----CCCC-cEEEEecCchhhhhHHHH
Q psy12852 622 TTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS----LGSG-DVIYNCLPMYHSAGGLIG 696 (1102)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~----~~~~-d~~l~~~pl~~~~~~~~~ 696 (1102)
..... ........++++++++|||||||.||||+++|+++..++......++ +.++ ++++...|++|..++...
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (560)
T PRK08751 194 LGRKH-SMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTAN 272 (560)
T ss_pred ccCCC-CCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHh
Confidence 11111 11113456789999999999999999999999999887766555443 3344 567788999999986667
Q ss_pred HHhHhhcCceEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHH
Q psy12852 697 TIPALILGSSIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKR 773 (1102)
Q Consensus 697 i~~~l~~G~~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~ 773 (1102)
.+.++..|++.++.. .+++..+++.++++++|++.++|+++..++...... ...+++.+++||+++++.+.++|.+.
T Consensus 273 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~ 352 (560)
T PRK08751 273 GLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQV 352 (560)
T ss_pred hhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHH
Confidence 777888888877765 478999999999999999999999999988764322 23467888889999999999999988
Q ss_pred hCcchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceE
Q psy12852 774 FHVQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMII 849 (1102)
Q Consensus 774 ~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~ 849 (1102)
++. .+++.||+||++..++.... ..+++|.+. ....+.++|++ |.+ ++.|+.||++
T Consensus 353 ~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~-------~~~~v~i~d~~-~~~-----------~~~g~~Gel~ 412 (560)
T PRK08751 353 TGL-TLVEAYGLTETSPAACINPLTLKEYNGSIGLPI-------PSTDACIKDDA-GTV-----------LAIGEIGELC 412 (560)
T ss_pred hCC-eEEEeeccccCCCceecccccccccCCCcCccC-------CCceEEEECCC-CCC-----------CCCCCceEEE
Confidence 765 89999999999876654322 122333332 23445555543 433 4667777765
Q ss_pred EEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc
Q psy12852 850 GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929 (1102)
Q Consensus 850 gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~ 929 (1102)
+.|+. ++.||++++..+...+. +++||+|||+|+++++|.++++||.||+||++|++|+|.|||++|.++
T Consensus 413 ----v~~~~-~~~gy~~~~~~~~~~~~-----~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 413 ----IKGPQ-VMKGYWKRPEETAKVMD-----ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred ----EecCc-cchhhcCChhhhhhccc-----cCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence 55884 78899998744333322 368999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 930 LPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 930 ~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
++|.+++|+++++.. .++...++++..+...+.++++++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus 483 ~~v~~~~v~~~~~~~-~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 483 PGVLEVAAVGVPDEK-SGEIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred cCeeeeEEEecCCCC-CCceEEEEEEcCCCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence 999999999866543 345455555545556778899999999999999999999999999999999999999875
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=532.56 Aligned_cols=497 Identities=19% Similarity=0.189 Sum_probs=371.0
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
...+.|.+. ++.+|+++|+.+.+. |+||.++++++|+.|.+.|+++|++|+|++++++++++++|||+++|+++
T Consensus 19 ~~~~~~~~~---~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~ 95 (545)
T PRK08162 19 TPLSFLERA---AEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL 95 (545)
T ss_pred CHHHHHHHH---HHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEE
Confidence 345566554 788999999987654 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCC--------CCCChhHhhccCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKP--------DLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 629 (1102)
+|+++.++.+++.++++++++++++++.+..+.+.......+..+.+.++.... ....+.......... ..
T Consensus 96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (545)
T PRK08162 96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPD-FA 174 (545)
T ss_pred eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCcc-cc
Confidence 999999999999999999999999999988776665544443332333322111 112233333221111 11
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
.....+..++++|+|||||||.||||+++|+++..........+++..++++++.+|++|..+....++.++ .|++.++
T Consensus 175 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~ 253 (545)
T PRK08162 175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVC 253 (545)
T ss_pred ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEE
Confidence 112234568999999999999999999999998776665566677888999999999999988544444444 5666666
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 787 (1102)
..++++..+++.++++++|++.++|++++.|+...... ........+++|+.+++++.+.+.+. + .++++.||+||
T Consensus 254 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~-~~~~~~YG~tE 331 (545)
T PRK08162 254 LRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI-G-FDLTHVYGLTE 331 (545)
T ss_pred eCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh-C-Cceeecccccc
Confidence 67789999999999999999999999999998764431 22234455778999999999988764 4 48999999999
Q ss_pred CCcccccCCCCCC---------cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCc
Q psy12852 788 GNANLVNMDNTEG---------AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858 (1102)
Q Consensus 788 ~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~ 858 (1102)
++..++....... .......+.+.. ....+.++|++++.++ +. .|+..|||++.|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~i~d~~~~~~~-----------~~--~g~~~Gel~v~g~~ 397 (545)
T PRK08162 332 TYGPATVCAWQPEWDALPLDERAQLKARQGVRYP-LQEGVTVLDPDTMQPV-----------PA--DGETIGEIMFRGNI 397 (545)
T ss_pred cCcceeecccccccccCCccchhhccCCCCcccC-CcceEEEEcCCCCccc-----------CC--CCCceeEEEEecCc
Confidence 8644332211000 000011111111 1112445565544433 22 23334556677884
Q ss_pred ccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEE
Q psy12852 859 RHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937 (1102)
Q Consensus 859 ~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~v 937 (1102)
++.||++++ .+...|. ++||+|||+|++|+||.++|+||.||+||++|+||+|.|||.+|.++|+|.+++|
T Consensus 398 -~~~gY~~~~~~~~~~~~-------~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v 469 (545)
T PRK08162 398 -VMKGYLKNPKATEEAFA-------GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAV 469 (545)
T ss_pred -chhhhcCChhhhHHHhh-------CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEE
Confidence 888999887 5555553 5799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 938 YGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 938 v~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++.+... .++...++++ ..+...+.+++++++++.||.|++|..+++ .++|+|+|||++|+.|++....
T Consensus 470 v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~ 539 (545)
T PRK08162 470 VAKPDPK-WGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS 539 (545)
T ss_pred Eeeeccc-cCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhh
Confidence 9866554 2343333333 333346788999999999999999999875 6899999999999999987543
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=531.34 Aligned_cols=491 Identities=20% Similarity=0.287 Sum_probs=376.2
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +++.+|+++|+.+.+. |+||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 34 ~l~~~l~~--~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 111 (567)
T PRK06178 34 PLTEYLRA--WARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHV 111 (567)
T ss_pred cHHHHHHH--HHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEe
Confidence 34444444 5788999999987664 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC--CC----------------CCChhHhh
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK--PD----------------LPNLSDLM 620 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~~~~~ 620 (1102)
|++|..+.+++.+++++++++++++++...+.+........-..++..+... +. ...+.+..
T Consensus 112 ~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (567)
T PRK06178 112 PVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLL 191 (567)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccHH
Confidence 9999999999999999999999999988777666554333211222211000 00 00011111
Q ss_pred ccCCC-CCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh-ccCCCCCcEEEEecCchhhhhHHHHHH
Q psy12852 621 KTTPA-SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH-LLSLGSGDVIYNCLPMYHSAGGLIGTI 698 (1102)
Q Consensus 621 ~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~~~~~~i~ 698 (1102)
..... ..........++++++|+|||||||.||||++||+++......... ...+..+|+++.++|++|..|....++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 271 (567)
T PRK06178 192 PALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLL 271 (567)
T ss_pred HHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHH
Confidence 11000 0111113356789999999999999999999999999876554433 366788999999999999998777889
Q ss_pred hHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcc--ccccceeeee--ccCCCHHHHHHHHHHh
Q psy12852 699 PALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA--DYSHQVVKMI--GVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 699 ~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~l~~~~~~--Ge~l~~~~~~~~~~~~ 774 (1102)
.++..|+++++.+++++..++..++++++|.+.++|..+..++....... ...++.+..+ |+.+++++.+.|.+.+
T Consensus 272 ~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 351 (567)
T PRK06178 272 FPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALT 351 (567)
T ss_pred HHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988876543221 2234443333 6999999999999998
Q ss_pred CcchhhhccccccCCcccccCCC----------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCC
Q psy12852 775 HVQTIIEFYGATEGNANLVNMDN----------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQ 844 (1102)
Q Consensus 775 ~~~~l~n~YG~TE~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~ 844 (1102)
+...+.+.||+||++..++.... .+..+|.+ . .++.+.++|++++.+ ++.|+
T Consensus 352 g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p------~-~g~~v~v~d~~~~~~-----------~~~g~ 413 (567)
T PRK06178 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLP------V-PGTEFKICDFETGEL-----------LPLGA 413 (567)
T ss_pred CCcccccccccccccccceeccccccCccccccCCcccccc------c-CCcEEEEEcCCCCCc-----------CCCCC
Confidence 87445568999998765432211 11122322 1 344555666555544 46777
Q ss_pred CcceEEEEeecCCcccccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHH
Q psy12852 845 PGMIIGEIKQSDPSRHFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923 (1102)
Q Consensus 845 ~Gel~gei~~~G~~~~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE 923 (1102)
+||++ +.|+ .++.||++++. +.+.| . ++||+|||+|++++||+++++||+||+||++|.+|+|.|||
T Consensus 414 ~Gel~----v~g~-~v~~gY~~~~~~~~~~~-~------dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE 481 (567)
T PRK06178 414 EGEIV----VRTP-SLLKGYWNKPEATAEAL-R------DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVE 481 (567)
T ss_pred ceEEE----EECC-cccccccCChhhhhhcc-c------CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHH
Confidence 77765 5588 48899999874 44433 2 46999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhh
Q psy12852 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002 (1102)
Q Consensus 924 ~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L 1002 (1102)
+++.++++|.+++|++.+++. .++..+++++ ..+...+.++++++++++||.|++|. +++++++|+|++||++|++|
T Consensus 482 ~~l~~~~~v~~~~v~~~~~~~-~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l 559 (567)
T PRK06178 482 ALLGQHPAVLGSAVVGRPDPD-KGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDL 559 (567)
T ss_pred HHHHhCCCeeEEEEEcCcCcc-cCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHH
Confidence 999999999999999855443 3344444433 23335678999999999999999996 88899999999999999999
Q ss_pred hhcC
Q psy12852 1003 QNEG 1006 (1102)
Q Consensus 1003 ~~~~ 1006 (1102)
+++.
T Consensus 560 ~~~~ 563 (567)
T PRK06178 560 QALA 563 (567)
T ss_pred HHHH
Confidence 8764
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-55 Score=532.23 Aligned_cols=489 Identities=19% Similarity=0.202 Sum_probs=360.2
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
.++.+|+++|+.+... |+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.++
T Consensus 29 ~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~ 108 (567)
T PLN02479 29 AAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPT 108 (567)
T ss_pred HHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHH
Confidence 4788999999987643 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCC--------CceEEEecCCC-----------CCCCChhHhhccCCCCCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIP--------DVKLFLLDETK-----------PDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 629 (1102)
+.+++++++++++++++...+....+...+. ...++.++... .+...+.+++....... .
T Consensus 109 l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 187 (567)
T PLN02479 109 IAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF-A 187 (567)
T ss_pred HHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhcccccc-c
Confidence 9999999999999999876655444322111 11233332211 11223333333211111 1
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
.......+++++++|||||||.||||++||+++..........+++++++++++.+|++|..+....++.++..|.++ +
T Consensus 188 ~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~-~ 266 (567)
T PLN02479 188 WKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNI-C 266 (567)
T ss_pred cCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceE-e
Confidence 112233457888999999999999999999998776665666778899999999999999988544444456655555 4
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc---cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE---ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
...+++..+++.++++++|++..+|++++.|....... ...+++.++++|+++++++.++|.+. + .++++.||+|
T Consensus 267 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~-~~~~~~yG~t 344 (567)
T PLN02479 267 LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK-G-FRVTHTYGLS 344 (567)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc-C-Cceecccccc
Confidence 46689999999999999999999999999987754322 23456667888999999999998775 3 4899999999
Q ss_pred cCCcccccCCCCC-------Ccccc--cCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCC
Q psy12852 787 EGNANLVNMDNTE-------GAVGI--IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857 (1102)
Q Consensus 787 E~~~~~~~~~~~~-------~~~g~--~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~ 857 (1102)
|+++.++.....+ ..... ...+.+..+.+ .+.++|++++.++ +.+ |+..|||++.|+
T Consensus 345 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~-~~~i~d~~~~~~~-----------~~~--g~~~GEl~v~g~ 410 (567)
T PLN02479 345 ETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLE-GLDVVDTKTMKPV-----------PAD--GKTMGEIVMRGN 410 (567)
T ss_pred cccccccceeccccccccCcccccccccccCCCcCCcC-ceeEEcCCCCccc-----------CCC--CCCceEEEEecc
Confidence 9865443211000 00000 00111111111 1234444434332 322 223345556788
Q ss_pred cccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeE
Q psy12852 858 SRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFT 936 (1102)
Q Consensus 858 ~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~ 936 (1102)
.++.||++++ .+.++|. ++||+|||+|+++++|+++|+||.||+||++|+||+|.|||++|.++|.|.+++
T Consensus 411 -~~~~GY~~~~~~t~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~ 482 (567)
T PLN02479 411 -MVMKGYLKNPKANEEAFA-------NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEAS 482 (567)
T ss_pred -chhhhhhcCcccccchhc-------CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceee
Confidence 4789999987 5555553 579999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCceeEEEEEcCCC------ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 937 VYGVKVGDLDGRAGMIAIVDTSN------QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 937 vv~~~~~~~~~~~~l~~~v~~~~------~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|++.+... .++...++++.... ....++|+++++++||.|++|..+++ +++|+|++||++|+.|++....
T Consensus 483 v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 483 VVARPDER-WGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred EEeccchh-cCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence 99865443 23333333332211 23457899999999999999998876 7799999999999999876443
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=520.79 Aligned_cols=477 Identities=21% Similarity=0.242 Sum_probs=370.7
Q ss_pred hcccCCcccchhhc--c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTVK--N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~--~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++|+++. + +|.||.++++++|+.|.+.|+++|++|+++++++++++++++||+++|++++|+++.++.
T Consensus 6 ~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~ 85 (511)
T PRK13391 6 HAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85 (511)
T ss_pred hHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCH
Confidence 57889999998762 2 299999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecC--CCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEE
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDE--TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYI 643 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii 643 (1102)
+++.++++++++++++++......+..+....+.. ..+.++. .......+.+.....+ .. ...+..+.++++
T Consensus 86 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~a~il 160 (511)
T PRK13391 86 AEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLP---AT--PIADESLGTDML 160 (511)
T ss_pred HHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCC---CC--CCCCcccccEEE
Confidence 99999999999999999988776666555544432 2233332 1112222332222111 11 112344678999
Q ss_pred ECCCCCCCCceEEe--ccHHHHH---hhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHH
Q psy12852 644 YTSGTTGLPKAAIM--PNFKVLL---GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNY 718 (1102)
Q Consensus 644 ~TSGSTG~PKgV~~--th~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l 718 (1102)
|||||||.||||++ +|.++.. ........+++.++++++...|++|..+ ....+.++..|+++++.+.+++..+
T Consensus 161 ~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (511)
T PRK13391 161 YSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAP-QRAVMLVIRLGGTVIVMEHFDAEQY 239 (511)
T ss_pred ECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHH-HHHHHHHHHcCceEEECCCCCHHHH
Confidence 99999999999995 5666543 2344456678889999999999999988 6677888999999999988999999
Q ss_pred HHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc
Q psy12852 719 FRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN 794 (1102)
Q Consensus 719 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 794 (1102)
++.++++++|++.++|+++..++...... ...+++.+++||+++++++.+.+.+.++. .+++.||+||++.++..
T Consensus 240 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~-~v~~~YG~tE~~~~~~~ 318 (511)
T PRK13391 240 LALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGP-IIHEYYAATEGLGFTAC 318 (511)
T ss_pred HHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCC-ceeeeeccccccceEEe
Confidence 99999999999999999998887643211 23467888889999999999999998875 79999999999876543
Q ss_pred CC----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-H
Q psy12852 795 MD----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-E 869 (1102)
Q Consensus 795 ~~----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~ 869 (1102)
.. ..++++|.+. +..+.++|++ |.+ ++.|++||++ +.|+ ++.||++++ .
T Consensus 319 ~~~~~~~~~~~vG~~~--------~g~~~i~d~~-~~~-----------~~~g~~Gel~----~~g~--~~~gy~~~~~~ 372 (511)
T PRK13391 319 DSEEWLAHPGTVGRAM--------FGDLHILDDD-GAE-----------LPPGEPGTIW----FEGG--RPFEYLNDPAK 372 (511)
T ss_pred cCccccccCCCcCCcc--------cceEEEECCC-CCC-----------CCCCCceEEE----EecC--cceEEcCChhH
Confidence 22 1223444432 2234455543 433 3677888766 4577 445788776 5
Q ss_pred HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCce
Q psy12852 870 SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRA 949 (1102)
Q Consensus 870 t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~ 949 (1102)
+.+.|.. .++||+|||+|+++++|.+++.||.||++|++|++|+|.|||++|.+||.|.+++|++++... .++.
T Consensus 373 ~~~~~~~-----~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~-~g~~ 446 (511)
T PRK13391 373 TAEARHP-----DGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNED-LGEE 446 (511)
T ss_pred hHHhhcc-----CCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcc-cCce
Confidence 5555543 258999999999999999999999999999999999999999999999999999999865543 3344
Q ss_pred eEEEEEcCC-C---ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 950 GMIAIVDTS-N---QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 950 ~l~~~v~~~-~---~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
..++++... . ....++++++++++||.|++|..|.+++++|+|+|||++|+.|++.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 508 (511)
T PRK13391 447 VKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYW 508 (511)
T ss_pred eEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhh
Confidence 333333211 1 123578999999999999999999999999999999999999998654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-55 Score=536.85 Aligned_cols=462 Identities=16% Similarity=0.172 Sum_probs=348.1
Q ss_pred hcccCCcccchhhc--------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCC
Q psy12852 492 NARSTNDAAATTVK--------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTN 563 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~--------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~ 563 (1102)
+++++|+++|+.+. -+|+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|++|.
T Consensus 48 ~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~ 127 (614)
T PRK08180 48 WAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPA 127 (614)
T ss_pred HHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccc
Confidence 48889999999753 1399999999999999999999999999999999999999999999999999999999
Q ss_pred CC-----chhhhhhhhccCceEEEEcCcc--hhHHHHHHhcCCCceEEEecCCC--CCCCChhHhhccCCCCC-CCCCCC
Q psy12852 564 LK-----KQPLVHSISTVKSKAIIVSALY--YPEIEAIRESIPDVKLFLLDETK--PDLPNLSDLMKTTPASE-VKPSEP 633 (1102)
Q Consensus 564 ~p-----~~~l~~il~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 633 (1102)
++ .+++.+++++++++++|+++.. ...+..... ....++..+... .....+.++........ ......
T Consensus 128 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (614)
T PRK08180 128 YSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAA 205 (614)
T ss_pred cccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCceEEEecCCCCCcccccHHHHhccccccchhhhccC
Confidence 98 7899999999999999997542 122221111 123344433211 11234555443321111 111124
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCC--CCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG--SGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
..++|+++|+|||||||.||||++||+++..++......+++. .++++++++|++|..++...++.+++.|+++++.+
T Consensus 206 ~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~ 285 (614)
T PRK08180 206 VGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDD 285 (614)
T ss_pred CCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeC
Confidence 5678999999999999999999999999998887777767664 56899999999999987788889999999999976
Q ss_pred C-CC---HhHHHHHHhhcccccccccHHHHHHHHhccCC------ccccccceeeeeccCCCHHHHHHHHHH----hC-c
Q psy12852 712 K-FS---ASNYFRDCAKYKCNAGIYIGEMCRYLLASKES------EADYSHQVVKMIGVGMRGDIWAKFVKR----FH-V 776 (1102)
Q Consensus 712 ~-~~---~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------~~~~~l~~~~~~Ge~l~~~~~~~~~~~----~~-~ 776 (1102)
. ++ ...+++.++++++|+++++|+++..|+..... ....+++.+++||+++++++.++|.+. ++ .
T Consensus 286 ~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~ 365 (614)
T PRK08180 286 GKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGER 365 (614)
T ss_pred CCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCC
Confidence 3 44 34678889999999999999999988764211 123467888999999999999999875 33 2
Q ss_pred chhhhccccccCCcccccCC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe
Q psy12852 777 QTIIEFYGATEGNANLVNMD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853 (1102)
Q Consensus 777 ~~l~n~YG~TE~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~ 853 (1102)
..+++.||+||++.+++... ...+++|.+.+ ++.+.++ +.|..|| |+
T Consensus 366 ~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~p-------g~~v~i~-------------------d~~~~GE----i~ 415 (614)
T PRK08180 366 IRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAP-------GCEVKLV-------------------PVGGKLE----VR 415 (614)
T ss_pred ceeeeeecccccCCceEecccccCCCCcccCccC-------CcEEEEe-------------------cCCCCcE----EE
Confidence 47999999999986665332 12234444321 1222222 2233455 44
Q ss_pred ecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEE----ecCccEEEEccCCCeEEe-Cceeec--hHHHHHH
Q psy12852 854 QSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVM----DELGYLYFKDRTGDTYRW-KGENVS--TMEVEAT 925 (1102)
Q Consensus 854 ~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~----~~dG~l~~~GR~dd~Iki-~G~ri~--~~eIE~~ 925 (1102)
++|| .++.||++++ .|.+.|. +++||+|||+|++ |+||+|+|+||+||+||+ +|++|+ +.|||.+
T Consensus 416 vrg~-~v~~GY~~~p~~t~~~~~------~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~ 488 (614)
T PRK08180 416 VKGP-NVTPGYWRAPELTAEAFD------EEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAV 488 (614)
T ss_pred EecC-ccchhhcCChhHhHhhcc------cCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHH
Confidence 6788 4889999987 4555442 3689999999999 568999999999999986 798877 7899999
Q ss_pred HHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCc-----------------cCHHHHHHHHHccCCCCC--------cc
Q psy12852 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQ-----------------VDLKLLVQGLDANLPAYA--------RP 980 (1102)
Q Consensus 926 l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~-----------------~~~~~l~~~l~~~Lp~~~--------~P 980 (1102)
+.+||+|++|+|++.+++ .+.+++.+... .+.++|++++++.|..|+ +|
T Consensus 489 l~~~p~V~~a~V~g~~~~------~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p 562 (614)
T PRK08180 489 SAGAPLVQDVVITGHDRD------EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRV 562 (614)
T ss_pred hhcCchhheEEEEcCCCC------ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhhe
Confidence 999999999999984322 23444433211 355678998888888777 89
Q ss_pred eEEEEecCccCCCCccch
Q psy12852 981 LFVRIMKAIEMTGTFKIK 998 (1102)
Q Consensus 981 ~~i~~l~~lP~t~~GKid 998 (1102)
+++++++++|+|++||+.
T Consensus 563 ~~~~~~~~~p~~~~gk~t 580 (614)
T PRK08180 563 ARALLLDEPPSLDAGEIT 580 (614)
T ss_pred eEEEEecCCCCCccCccC
Confidence 999999999988777554
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=505.34 Aligned_cols=399 Identities=19% Similarity=0.155 Sum_probs=333.2
Q ss_pred hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCc
Q psy12852 507 LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSAL 586 (1102)
Q Consensus 507 ~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~ 586 (1102)
+|+||.++++++|+.|. .|+++|++|+|+++++++++++++|++++|++++|+++..+.+++..+++++++++++++..
T Consensus 10 ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (414)
T PRK08308 10 SKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYGES 88 (414)
T ss_pred cHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEecCc
Confidence 39999999999999985 68999999999999999999999999999999999999999999999999999999998753
Q ss_pred chhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh
Q psy12852 587 YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666 (1102)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~ 666 (1102)
... .. . .....++++++++|||||||.||||+++|+++.+++
T Consensus 89 ~~~----------------~~--------------~--------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~ 130 (414)
T PRK08308 89 DFT----------------KL--------------E--------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREI 130 (414)
T ss_pred ccc----------------cc--------------c--------CCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHH
Confidence 100 00 0 012356789999999999999999999999999988
Q ss_pred hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC
Q psy12852 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746 (1102)
Q Consensus 667 ~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~ 746 (1102)
......+++..+|+++..+|++|..+++..++.+|..|+++++.+.+++..+++.++++++|++.++|+++..+......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~ 210 (414)
T PRK08308 131 EAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG 210 (414)
T ss_pred HHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc
Confidence 88888889999999999999999999778899999999999999989999999999999999999999999998775432
Q ss_pred ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC-CCCCcccccCCCCCCcCCCeeeEEeecCC
Q psy12852 747 EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD-NTEGAVGIIPTLLPTFLHPVAIIQFDLVE 825 (1102)
Q Consensus 747 ~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~d~~~ 825 (1102)
. ..++.++.+|+++++++.++|.+.. .+++|.||+||+++++.... .....+|.+.+ .+.+...+
T Consensus 211 ~--~~l~~~~~~G~~l~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~~~~~~~~~~~G~p~~-------~~~~~~~~--- 276 (414)
T PRK08308 211 T--FQFHAVMTSGTPLPEAWFYKLRERT--TYMMQQYGCSEAGCVSICPDMKSHLDLGNPLP-------HVSVSAGS--- 276 (414)
T ss_pred c--ccccEEEEccCCCCHHHHHHHHHhC--ChhhhccCccccCCeeecCCCCCCCccCccCC-------CeEEEEec---
Confidence 2 3567778899999999999998863 37999999999987654332 12233443321 11211111
Q ss_pred CCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEcc
Q psy12852 826 NQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905 (1102)
Q Consensus 826 g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR 905 (1102)
..|.+||++++ + +++||+|||+|++++||+++|+||
T Consensus 277 ---------------~~~~~gel~v~----~-------------------------~~~~~~TGDl~~~~~dg~l~~~GR 312 (414)
T PRK08308 277 ---------------DENAPEEIVVK----M-------------------------GDKEIFTKDLGYKSERGTLHFMGR 312 (414)
T ss_pred ---------------CCCCCceEEEE----c-------------------------CCceEECCceEEECCCccEEEecc
Confidence 13567777643 1 157999999999999999999999
Q ss_pred CCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEE
Q psy12852 906 TGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRI 985 (1102)
Q Consensus 906 ~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~ 985 (1102)
.|++||++|+||+|.|||+++.++|+|.+++|++++++. .++. +.+++......+.++++++++++||.|++|..+++
T Consensus 313 ~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~-~~~~-~~~~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 390 (414)
T PRK08308 313 MDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPV-AGER-VKAKVISHEEIDPVQLREWCIQHLAPYQVPHEIES 390 (414)
T ss_pred cCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCC-CCce-EEEEEEeCCCCCHHHHHHHHHHhCccccCCcEEEE
Confidence 999999999999999999999999999999999866554 3333 44444344567889999999999999999999999
Q ss_pred ecCccCCCCccchhhhhhh
Q psy12852 986 MKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 986 l~~lP~t~~GKidr~~L~~ 1004 (1102)
+++||+|++||+||+.|+.
T Consensus 391 v~~iP~t~~GKi~r~~~~~ 409 (414)
T PRK08308 391 VTEIPKNANGKVSRKLLEL 409 (414)
T ss_pred eccCCCCCCcCeehhhhhh
Confidence 9999999999999996653
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=520.20 Aligned_cols=480 Identities=23% Similarity=0.286 Sum_probs=370.3
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+++++|+++|+.+.+. |+||.++++++|.+|.+ .|+++|++|+++++|+.++++++|||+++|++++|++|.++.+
T Consensus 32 ~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~ 111 (560)
T PRK08974 32 AVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPR 111 (560)
T ss_pred HHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHH
Confidence 4789999999987554 99999999999999985 8999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCC---------------------------CCCChhHhh
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKP---------------------------DLPNLSDLM 620 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 620 (1102)
++.++++++++++++++++..+.+..+..... ...+.+..... ....+.+..
T Consensus 112 ~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
T PRK08974 112 ELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTP-VKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSAL 190 (560)
T ss_pred HHHHHHHhcCceEEEEeccccHHHHHHhhhcC-cceEEEecccccccccccccccchhhhcccccccccCCCcccHHHHh
Confidence 99999999999999998876665555432221 11111110000 000111111
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC---CCCCcEEEEecCchhhhhHHHHH
Q psy12852 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS---LGSGDVIYNCLPMYHSAGGLIGT 697 (1102)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~pl~~~~~~~~~i 697 (1102)
...... ........++++++|+|||||||.||||.++|+++..++......+. ...++.++..+|++|.+++....
T Consensus 191 ~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 269 (560)
T PRK08974 191 HKGRRM-QYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNC 269 (560)
T ss_pred hccCCC-CCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHH
Confidence 111100 11112356789999999999999999999999999876654433332 34466888899999988877778
Q ss_pred HhHhhcCceEEEeC-CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHh
Q psy12852 698 IPALILGSSIAIRT-KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 698 ~~~l~~G~~lv~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~ 774 (1102)
+.++..|+++++.. ..++..+++.++++++|.+.++|++++.|+...... ....++++++||+++++.+.++|.+.+
T Consensus 270 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~ 349 (560)
T PRK08974 270 LLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLT 349 (560)
T ss_pred HHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHh
Confidence 88889999977764 468889999999999999999999999988754322 234677788899999999999999887
Q ss_pred CcchhhhccccccCCcccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEE
Q psy12852 775 HVQTIIEFYGATEGNANLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850 (1102)
Q Consensus 775 ~~~~l~n~YG~TE~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~g 850 (1102)
+. .+++.||+||++..++..... .+.+|.+. ....+.++|++ +. +++.|+.||++
T Consensus 350 g~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~~~~-~~-----------~~~~g~~Gel~- 408 (560)
T PRK08974 350 GQ-YLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPV-------PSTEIKLVDDD-GN-----------EVPPGEPGELW- 408 (560)
T ss_pred CC-cEEeeecccccCceeeccCCCCcccCCccccCc-------CCCEEEEECCC-CC-----------CCCCCCceEEE-
Confidence 65 899999999998776544321 22333321 23344445543 33 44778877766
Q ss_pred EEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc
Q psy12852 851 EIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929 (1102)
Q Consensus 851 ei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~ 929 (1102)
+.|+ .++.||++++ .+.+.| . ++||+|||+|+++++|.++++||.||+||++|++|+|.+||++|.++
T Consensus 409 ---v~g~-~~~~gy~~~~~~~~~~~-~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~ 477 (560)
T PRK08974 409 ---VKGP-QVMLGYWQRPEATDEVI-K------DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLH 477 (560)
T ss_pred ---EecC-CcchhhcCChhhhhhhh-h------cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhC
Confidence 5588 4788999886 444444 2 57999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 930 LPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 930 ~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
|+|.+++|++.++.. .++...++++......+.+++++++.++|+.|++|..+.+++++|+|++||++|+.|++..
T Consensus 478 ~~v~~~~v~~~~~~~-~g~~~~~~v~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~ 553 (560)
T PRK08974 478 PKVLEVAAVGVPSEV-SGEAVKIFVVKKDPSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEA 553 (560)
T ss_pred CCeeEEEEEeeecCC-cceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHH
Confidence 999999999866553 3444444444444456778999999999999999999999999999999999999998764
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=532.37 Aligned_cols=486 Identities=16% Similarity=0.152 Sum_probs=352.7
Q ss_pred hhHHHHHHHHhhcccCCcccchhhc------------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHH
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVK------------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~------------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~l 548 (1102)
+..+.|.+ .++++|+++|+... .+|+||.++++++|..|.+.|+++|++|+|+++|+++|+++++
T Consensus 43 t~~~~~~~---~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 43 TAWDIFSK---SVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CHHHHHHH---HHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 33444444 58899999998531 2599999999999999999999999999999999999999999
Q ss_pred HHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcch-hHHHHHHhcCCCc-eEEEecCCCC-----------CCCC
Q psy12852 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYY-PEIEAIRESIPDV-KLFLLDETKP-----------DLPN 615 (1102)
Q Consensus 549 A~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~ 615 (1102)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.+ .++.++.... ....
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS 199 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEE
Confidence 9999999999999999999999999999999999986532 2222222222232 3344432110 0123
Q ss_pred hhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc-----cCCCCCcEEEEecCchhh
Q psy12852 616 LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-----LSLGSGDVIYNCLPMYHS 690 (1102)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l~~~pl~~~ 690 (1102)
++++......... ......++|+++|+|||||||.||||++||+|+...+...... .+++++|++++++|++|.
T Consensus 200 ~~~~~~~~~~~~~-~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~ 278 (660)
T PLN02430 200 WIDFLHMGKENPS-ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHI 278 (660)
T ss_pred HHHHHHhhccCCC-CCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHH
Confidence 4444332221111 1123468999999999999999999999999998877654322 257789999999999999
Q ss_pred hhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccC-------------------------
Q psy12852 691 AGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE------------------------- 745 (1102)
Q Consensus 691 ~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 745 (1102)
.+... .+.++..|+++++... ++..+.+.|++.++|++.++|.+++.+.+...
T Consensus 279 ~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
T PLN02430 279 LDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWM 356 (660)
T ss_pred HHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 98544 4557899999988754 78889999999999999999999987754200
Q ss_pred ---------Cc-------------cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CC
Q psy12852 746 ---------SE-------------ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TE 799 (1102)
Q Consensus 746 ---------~~-------------~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~ 799 (1102)
.. ....++.+++||+++++++. +|.+.++...++++||+||++..++.... ..
T Consensus 357 ~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~-~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 435 (660)
T PLN02430 357 NRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE-EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCML 435 (660)
T ss_pred hcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH-HHHHHhcCCCeeeecchhhhhhceEeeccccCCCC
Confidence 00 00356778889999999975 55566665579999999999866543221 23
Q ss_pred CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcc
Q psy12852 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENV 878 (1102)
Q Consensus 800 ~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~ 878 (1102)
+++|.+.++ ..+++..+++. |. .+++.+..||+ +++|| .++.||++++ .|.+.| .
T Consensus 436 gsvG~p~~~-----~evki~d~~~~-g~----------~~~~~~~~GEi----~vrg~-~v~~GY~~~~e~t~~~~-~-- 491 (660)
T PLN02430 436 GTVGAPAVY-----NELRLEEVPEM-GY----------DPLGEPPRGEI----CVRGK-CLFSGYYKNPELTEEVM-K-- 491 (660)
T ss_pred CCccCCCCc-----eEEEEEEcCCc-Cc----------ccCCCCCcceE----EecCC-CccccccCChHHhhhhh-h--
Confidence 455544221 23333222222 21 12344445665 46798 5889999987 555544 2
Q ss_pred cCCCCeEEEecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcC
Q psy12852 879 FKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT 957 (1102)
Q Consensus 879 ~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~ 957 (1102)
++||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||+++.+||.|.+++|++ +. ....+++++++
T Consensus 492 ----dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G--~~---~~~~~~A~vv~ 562 (660)
T PLN02430 492 ----DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG--DS---FKSMLVAVVVP 562 (660)
T ss_pred ----ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEe--cC---CcceEEEEEEc
Confidence 689999999999999999999999999997 799999999999999999999999997 21 13445555533
Q ss_pred CCc------------cC------HHHHH----HHH-----HccCCCCCcceEEEEecC-c-----cCCCCccchhhhhhh
Q psy12852 958 SNQ------------VD------LKLLV----QGL-----DANLPAYARPLFVRIMKA-I-----EMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 958 ~~~------------~~------~~~l~----~~l-----~~~Lp~~~~P~~i~~l~~-l-----P~t~~GKidr~~L~~ 1004 (1102)
... .+ ..+++ +.+ ++.|+.|.+++.|+++++ | .+|+++|+.|+.+.+
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~ 642 (660)
T PLN02430 563 NEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLK 642 (660)
T ss_pred CHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHH
Confidence 211 01 11122 222 246999999999998765 2 599999999999987
Q ss_pred cC
Q psy12852 1005 EG 1006 (1102)
Q Consensus 1005 ~~ 1006 (1102)
.+
T Consensus 643 ~y 644 (660)
T PLN02430 643 YY 644 (660)
T ss_pred HH
Confidence 54
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=515.40 Aligned_cols=438 Identities=19% Similarity=0.179 Sum_probs=350.8
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
.|+++|+++|+.+.+. |+||.++++++|..|.+.|+++|++|+++++++++++++++||+++|++++|+++..+.++
T Consensus 12 ~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~ 91 (458)
T PRK09029 12 WAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPL 91 (458)
T ss_pred HHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHH
Confidence 4778999999987654 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+..+++++++++++++.+... +..+ ..... . ... ........++++++++|||||
T Consensus 92 ~~~~~~~~~~~~~i~~~~~~~-~~~~-------~~~~~----------~----~~~---~~~~~~~~~~~~a~i~~TSGT 146 (458)
T PRK09029 92 LEELLPSLTLDFALVLEGENT-FSAL-------TSLHL----------Q----LVE---GAHAVAWQPQRLATMTLTSGS 146 (458)
T ss_pred HHHHHHhcCCCEEEEcCcccc-hhhc-------ccccc----------c----ccc---ccCcccCCCCCeEEEEECCCC
Confidence 999999999999999876432 1110 00000 0 000 011134567899999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt 728 (1102)
||.||||++||+++...+......+++.++|+++..+|++|..+ ...++.+|..|+++++.+. ..+.+.+ .++|
T Consensus 147 TG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g-~~~~~~~l~~G~~v~~~~~---~~~~~~i--~~~t 220 (458)
T PRK09029 147 TGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSG-QGIVWRWLYAGATLVVRDK---QPLEQAL--AGCT 220 (458)
T ss_pred CCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhh-hHHHHHHHhCCceEEeCCh---HHHHHHH--hhce
Confidence 99999999999999999888888899999999999999999998 5667788999999998764 4566666 3799
Q ss_pred cccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCC-CCcccccCC
Q psy12852 729 AGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT-EGAVGIIPT 807 (1102)
Q Consensus 729 ~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~g~~~~ 807 (1102)
.+..+|+++..++..... ..+++.+++||+++++.+.+.+.+ ++ .++++.||+||++...+..... ..++|.+.+
T Consensus 221 ~~~~~P~~~~~l~~~~~~--~~~l~~i~~gG~~~~~~~~~~~~~-~g-~~~~~~YG~tE~~~~~~~~~~~~~~~~G~~~~ 296 (458)
T PRK09029 221 HASLVPTQLWRLLDNRSE--PLSLKAVLLGGAAIPVELTEQAEQ-QG-IRCWCGYGLTEMASTVCAKRADGLAGVGSPLP 296 (458)
T ss_pred eeecChHHHHHHHhcccc--CCcceEEEECCCCCCHHHHHHHHH-cC-CcEeccccccccCcceeccCCCCCCCCCCCCC
Confidence 999999999988776443 346788899999999999998876 44 4899999999998655432211 112222211
Q ss_pred CCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEE
Q psy12852 808 LLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 887 (1102)
Q Consensus 808 ~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yr 887 (1102)
+..+.+ ..| ||++.|+. ++.||++++..... ..+++||+
T Consensus 297 -------~~~~~i-----------------------~~g----el~v~g~~-~~~gY~~~~~~~~~------~~~~~~~~ 335 (458)
T PRK09029 297 -------GREVKL-----------------------VDG----EIWLRGAS-LALGYWRQGQLVPL------VNDEGWFA 335 (458)
T ss_pred -------CCEEEE-----------------------eCC----EEEEecCc-eeeeeecCcccccc------ccCCCccC
Confidence 111111 014 45577884 88999987643321 13478999
Q ss_pred ecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHH
Q psy12852 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLV 967 (1102)
Q Consensus 888 TGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~ 967 (1102)
|||+|+++ ||.++|.||+||+||++|+||+|.|||++|.++|+|.+++|++++++. .++ .+++++......+.++|+
T Consensus 336 TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~-~~~-~~~a~v~~~~~~~~~~l~ 412 (458)
T PRK09029 336 TRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAE-FGQ-RPVAVVESDSEAAVVNLA 412 (458)
T ss_pred CCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcc-cCc-eEEEEEEcCcccCHHHHH
Confidence 99999999 999999999999999999999999999999999999999999865443 233 344454444557889999
Q ss_pred HHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 968 QGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 968 ~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++|+++||.|++|..+++++++|+|++||++|+.|+++...
T Consensus 413 ~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~ 453 (458)
T PRK09029 413 EWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQ 453 (458)
T ss_pred HHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHh
Confidence 99999999999999999999999999999999999987543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=518.89 Aligned_cols=469 Identities=19% Similarity=0.227 Sum_probs=371.9
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+.+|+++|+...+. |+||.+.++++|..|.+.|+++|++|+++++++.+++++++||+++|++++|+++.++.++
T Consensus 11 ~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~ 90 (503)
T PRK04813 11 FAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAER 90 (503)
T ss_pred HHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHH
Confidence 4788999999887554 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.++++.+++++++++...... ......+..++ +.+... ............++++++++|||||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGT 154 (503)
T PRK04813 91 IEMIIEVAKPSLIIATEELPLE-------ILGIPVITLDE-------LKDIFA--TGNPYDFDHAVKGDDNYYIIFTSGT 154 (503)
T ss_pred HHHHHHhcCCCEEEeccccccc-------ccCCcEEehHH-------hhhhhh--ccccccccccCCCCCcEEEEECCCC
Confidence 9999999999999998764210 11122222111 111111 0111111234567889999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhhc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKY 725 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~~ 725 (1102)
||.||||.++|+++...+.+....+++..+++++...|++|..+ +..++.+|..|+++++.++ .++..+++.++++
T Consensus 155 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~ 233 (503)
T PRK04813 155 TGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLS-VMDLYPTLASGGTLVALPKDMTANFKQLFETLPQL 233 (503)
T ss_pred CCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHh-HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHc
Confidence 99999999999999998888888899999999999999999988 7888899999999999876 5889999999999
Q ss_pred ccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCC-----
Q psy12852 726 KCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT----- 798 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----- 798 (1102)
++|++.++|++++.++.... ......++.++++|+++++.+.+.|.+.+++..+++.||+||++..++.....
T Consensus 234 ~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~ 313 (503)
T PRK04813 234 PINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLD 313 (503)
T ss_pred CCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccc
Confidence 99999999999987654422 23345778889999999999999999999777899999999997655432211
Q ss_pred ---CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHH
Q psy12852 799 ---EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKI 874 (1102)
Q Consensus 799 ---~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f 874 (1102)
....|.+ . .+..+.++|++ |.+ ++.|+.||++ +.|+ .++.||++++ .+.+.|
T Consensus 314 ~~~~~~~g~~-----~--~~~~~~i~d~~-~~~-----------~~~g~~Gel~----v~~~-~~~~gy~~~~~~~~~~~ 369 (503)
T PRK04813 314 QYKRLPIGYA-----K--PDSPLLIIDEE-GTK-----------LPDGEQGEIV----ISGP-SVSKGYLNNPEKTAEAF 369 (503)
T ss_pred cCCCCccccc-----C--CCCEEEEECCC-CCC-----------CCCCCceEEE----Eecc-ccccccCCChhHhHHhh
Confidence 1122222 1 23344455533 433 3667777655 5688 4888999886 566666
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
..+ .|.+||+|||+|++ ++|.+++.||.||+||++|++|+|.+||+.+.++|+|.+++|++..... .++..++++
T Consensus 370 ~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v 444 (503)
T PRK04813 370 FTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDH-KVQYLIAYV 444 (503)
T ss_pred ccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCC-CccEEEEEE
Confidence 543 45689999999999 9999999999999999999999999999999999999999999844332 233334444
Q ss_pred EcCCCccC-----HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 955 VDTSNQVD-----LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 955 v~~~~~~~-----~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
+......+ ..+++++++++|+.|++|..+++++++|+|+|||++|++|+++.
T Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~ 501 (503)
T PRK04813 445 VPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEV 501 (503)
T ss_pred EeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHh
Confidence 43222222 24689999999999999999999999999999999999998754
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=510.66 Aligned_cols=461 Identities=22% Similarity=0.300 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcc
Q psy12852 508 EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY 587 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~ 587 (1102)
|+||.+.++++|++|.+.|+++|++|+++++|+.++++++|||+++|++++|+++.++.+++.++++++++++++++...
T Consensus 14 y~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~ 93 (502)
T PRK08276 14 YGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAAL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhHHHHHHhcCC-CceEEEec-CCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHh
Q psy12852 588 YPEIEAIRESIP-DVKLFLLD-ETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG 665 (1102)
Q Consensus 588 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~ 665 (1102)
...+.......+ ..+.+.+. ........+++....... . .....++.++++|||||||.||||+++|+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~ 168 (502)
T PRK08276 94 ADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPD---T--PIADETAGADMLYSSGTTGRPKGIKRPLPGLDPD 168 (502)
T ss_pred hhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCCC---C--CCCCCCcceEEEECCCCCCCCceEEEccCCcchh
Confidence 776655544444 33333332 222223334433322111 1 1234567899999999999999999998876532
Q ss_pred h------hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHH
Q psy12852 666 G------QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739 (1102)
Q Consensus 666 ~------~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~ 739 (1102)
. ......+....++++++..|++|..+ ....+.++..|+++++.+.+++..+++.++++++|++.++|+++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 247 (502)
T PRK08276 169 EAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAP-LRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVR 247 (502)
T ss_pred hhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHH-HHHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHH
Confidence 2 22222333457789999999999988 5555678999999999988999999999999999999999999999
Q ss_pred HHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC----CCCCcccccCCCCCC
Q psy12852 740 LLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD----NTEGAVGIIPTLLPT 811 (1102)
Q Consensus 740 l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~----~~~~~~g~~~~~~~~ 811 (1102)
++..+... ...+++.+++||++++.++.+.+.+.++. .+++.||+||++.+++... ...+++|.+
T Consensus 248 l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~------ 320 (502)
T PRK08276 248 MLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP-IIHEYYASSEGGGVTVITSEDWLAHPGSVGKA------ 320 (502)
T ss_pred HHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCc-HhhhhcccccccceeEecCccccccCCCccee------
Confidence 88764321 13477888999999999999999998865 7999999999987554322 112233332
Q ss_pred cCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecc
Q psy12852 812 FLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGD 890 (1102)
Q Consensus 812 ~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGD 890 (1102)
....+.++|++ +. +++.|+.||++ +.|+. ++.||++++ .+.+.|.. ++||+|||
T Consensus 321 --~~~~~~i~d~~-~~-----------~~~~g~~Gel~----v~~~~-~~~gy~~~~~~~~~~~~~------~~~~~TGD 375 (502)
T PRK08276 321 --VLGEVRILDED-GN-----------ELPPGEIGTVY----FEMDG-YPFEYHNDPEKTAAARNP------HGWVTVGD 375 (502)
T ss_pred --cccEEEEECCC-CC-----------CCcCCCceEEE----EECCC-ccchhcCCHHHHHHHhcC------CCceeecc
Confidence 13344455543 33 34677777766 45774 556898886 55555542 48999999
Q ss_pred eeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC--ccC---HHH
Q psy12852 891 MMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN--QVD---LKL 965 (1102)
Q Consensus 891 l~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~--~~~---~~~ 965 (1102)
+|+++++|.+++.||+|++||++|++|++.|||.+|.++|+|.+++|+++..+. .++. +++++.... ..+ .++
T Consensus 376 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~ 453 (502)
T PRK08276 376 VGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE-MGER-VKAVVQPADGADAGDALAAE 453 (502)
T ss_pred eEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcc-cCce-EEEEEEECCCCCCChhhHHH
Confidence 999999999999999999999999999999999999999999999999865543 2333 444443221 222 347
Q ss_pred HHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 966 l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++++++++|+.||+|..+++++++|+|+|||++|++|++.+.+
T Consensus 454 i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 496 (502)
T PRK08276 454 LIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWE 496 (502)
T ss_pred HHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987544
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=505.69 Aligned_cols=432 Identities=20% Similarity=0.211 Sum_probs=344.6
Q ss_pred hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCc
Q psy12852 507 LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSAL 586 (1102)
Q Consensus 507 ~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~ 586 (1102)
+|+||.++++++|+.|.+.|+++|++|+|+++++++++++++||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh
Q psy12852 587 YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666 (1102)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~ 666 (1102)
..... .... .+.......... .........+++++++|||||||.||||+++|+++...+
T Consensus 81 ~~~~~---------~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~ 140 (436)
T TIGR01923 81 LEEKD---------FQAD----------SLDRIEAAGRYE-TSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASA 140 (436)
T ss_pred ccccc---------eeec----------chHhhhhccccc-ccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHH
Confidence 32110 0000 111111111111 111134567899999999999999999999999999998
Q ss_pred hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC
Q psy12852 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746 (1102)
Q Consensus 667 ~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~ 746 (1102)
......++++++|+++..+|++|..+ +..++.++..|+++++.+.+ ..+++.++++++|++.++|+++..|+.....
T Consensus 141 ~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~ 217 (436)
T TIGR01923 141 VGSKENLGFTEDDNWLLSLPLYHISG-LSILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGH 217 (436)
T ss_pred HHHHhhcCCCCCceEEEccCcHhHHH-HHHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC
Confidence 88888999999999999999999887 67889999999999998765 3899999999999999999999999886543
Q ss_pred ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCC----cccccCCCCCCcCCCeeeEEee
Q psy12852 747 EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG----AVGIIPTLLPTFLHPVAIIQFD 822 (1102)
Q Consensus 747 ~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~d 822 (1102)
. ..++.++++|+++++++.+.+.+ .+ ..++|.||+||++..++....... ..|.+. ..+.+.+.+
T Consensus 218 ~--~~l~~~~~~G~~~~~~~~~~~~~-~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~~ 286 (436)
T TIGR01923 218 N--ENLRKILLGGSAIPAPLIEEAQQ-YG-LPIYLSYGMTETCSQVTTATPEMLHARPDVGRPL-------AGREIKIKV 286 (436)
T ss_pred C--CceEEEEECCCCCCHHHHHHHHH-hC-CceeeEecCCccchhccCcCccccccccCCCccC-------CCcEEEEEe
Confidence 2 56788889999999999988865 44 489999999999876554332111 122221 122222211
Q ss_pred cCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEE
Q psy12852 823 LVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902 (1102)
Q Consensus 823 ~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~ 902 (1102)
++ .+++|| +++.|+ .++.||++++.....+. +++||+|||+|++++||.+++
T Consensus 287 ~~-----------------~~~~Ge----l~v~~~-~~~~gy~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~~~~ 338 (436)
T TIGR01923 287 DN-----------------KEGHGE----IMVKGA-NLMKGYLYQGELTPAFE------QQGWFNTGDIGELDGEGFLYV 338 (436)
T ss_pred CC-----------------CCCceE----EEEECC-ccchhhCCChhhhhhhh------cCCCeeccceEEEcCCCCEEE
Confidence 11 123455 556688 47899999765443332 268999999999999999999
Q ss_pred EccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceE
Q psy12852 903 KDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLF 982 (1102)
Q Consensus 903 ~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~ 982 (1102)
.||.||+||++|++|+|.+||++|.+++.|.+++|++.+... .+ ..+++++......+..++.+++++.||.|++|..
T Consensus 339 ~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~-~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~p~~ 416 (436)
T TIGR01923 339 LGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAE-WG-QVPVAYIVSESDISQAKLIAYLTEKLAKYKVPIA 416 (436)
T ss_pred eccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchh-cC-CeeEEEEEECCCCCHHHHHHHHHHhhhCCCCCeE
Confidence 999999999999999999999999999999999999744332 23 3344444333457888999999999999999999
Q ss_pred EEEecCccCCCCccchhhhh
Q psy12852 983 VRIMKAIEMTGTFKIKKIQL 1002 (1102)
Q Consensus 983 i~~l~~lP~t~~GKidr~~L 1002 (1102)
++++++||+|++||++|++|
T Consensus 417 i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 417 FEKLDELPYNASGKILRNQL 436 (436)
T ss_pred EEEecCCCCCCCCceecccC
Confidence 99999999999999999876
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=510.96 Aligned_cols=462 Identities=21% Similarity=0.244 Sum_probs=359.7
Q ss_pred hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCc
Q psy12852 507 LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSAL 586 (1102)
Q Consensus 507 ~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~ 586 (1102)
+|.||.++++++|++|.+.|+++|++|+++++|+++++++++|++++|++++|++|.++.+++.++++++++++++++..
T Consensus 13 Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~~ 92 (509)
T PRK12406 13 SFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHAD 92 (509)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEccc
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred chhHHHHHHhcCCCceEEEecCC----------------CCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCC
Q psy12852 587 YYPEIEAIRESIPDVKLFLLDET----------------KPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTG 650 (1102)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG 650 (1102)
....+...... ...++..+.. ......+++...... ......++++++++|||||||
T Consensus 93 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGtTG 165 (509)
T PRK12406 93 LLHGLASALPA--GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQPQSMIYTSGTTG 165 (509)
T ss_pred hhhhhhhhhhc--ccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCceEEEECCCCCC
Confidence 66544332211 1222222110 011122222221111 112345689999999999999
Q ss_pred CCceEEeccHHHH---HhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhccc
Q psy12852 651 LPKAAIMPNFKVL---LGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727 (1102)
Q Consensus 651 ~PKgV~~th~~l~---~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~v 727 (1102)
.||||+++|.+.. .........+++.++++++...|++|..+ ....+.++..|+++++.+..++..+++.++++++
T Consensus 166 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 244 (509)
T PRK12406 166 HPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAP-NAYGLRAGRLGGVLVLQPRFDPEELLQLIERHRI 244 (509)
T ss_pred CCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccch-HHHHHHHHhhheEEEEccCCCHHHHHHHHHHcCC
Confidence 9999998776543 33344456788899999999999999987 4445567889999999888999999999999999
Q ss_pred ccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----CC
Q psy12852 728 NAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN----TE 799 (1102)
Q Consensus 728 t~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~----~~ 799 (1102)
|++.++|+++..|+..... ....+++.++.||+++++++.+++.+.++. .+++.||+||++.+++.... .+
T Consensus 245 t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~ 323 (509)
T PRK12406 245 THMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGP-VIYEYYGSTESGAVTFATSEDALSHP 323 (509)
T ss_pred eEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCC-cEEeeccccccCceEecCcccccccC
Confidence 9999999999998765321 123567888899999999999999998865 79999999999976653321 22
Q ss_pred CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhccc
Q psy12852 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVF 879 (1102)
Q Consensus 800 ~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~ 879 (1102)
+++|.+. ....+.++|+. +. +++.|.+||+++ .|+.....||++++..++...
T Consensus 324 ~~~G~~~-------~~~~~~i~d~~-~~-----------~~~~g~~Gel~v----~~~~~~~~~y~~~~~~~~~~~---- 376 (509)
T PRK12406 324 GTVGKAA-------PGAELRFVDED-GR-----------PLPQGEIGEIYS----RIAGNPDFTYHNKPEKRAEID---- 376 (509)
T ss_pred CCcCccC-------CCcEEEEECCC-CC-----------CCCCCCceEEEE----ECCccccccccCCchhccccc----
Confidence 3444432 23444555543 33 347788888774 466544458988875444332
Q ss_pred CCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCC
Q psy12852 880 KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTS 958 (1102)
Q Consensus 880 ~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~ 958 (1102)
.++||+|||+|++++||.+++.||.||+||++|++|+|.|||++|.++|+|.+++|++++... .++..++++. ...
T Consensus 377 --~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~ 453 (509)
T PRK12406 377 --RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAE-FGEALMAVVEPQPG 453 (509)
T ss_pred --CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccc-cCceeEEEEEECCC
Confidence 268999999999999999999999999999999999999999999999999999999866543 2333333333 223
Q ss_pred CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 959 NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 959 ~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
...+.++++++++++|++|++|..+++++++|+|++||++|++|++...
T Consensus 454 ~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~ 502 (509)
T PRK12406 454 ATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYW 502 (509)
T ss_pred CCCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999987653
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=520.44 Aligned_cols=486 Identities=16% Similarity=0.181 Sum_probs=362.7
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
.++..++.. .++++|+.+++.... +|+||.++++++|++|++.|+++|++|+++++|+++++++++||+++|
T Consensus 21 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G 98 (579)
T PRK09192 21 PTLVEALDY--AALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAG 98 (579)
T ss_pred hhHHHHHHH--hhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Confidence 345555555 566777666554321 399999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCCC-------chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCC
Q psy12852 555 VISALINTNLK-------KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627 (1102)
Q Consensus 555 ~~~vpld~~~p-------~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1102)
++++|+++..+ .+++.++++.++++++|++....+.+.......+...+. .+..+......
T Consensus 99 ~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-- 166 (579)
T PRK09192 99 LVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVL----------SHAWFKALPEA-- 166 (579)
T ss_pred CeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccccccee----------ehhhhcccCCC--
Confidence 99999987543 589999999999999999987766555443222211111 11111111111
Q ss_pred CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh-ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCce
Q psy12852 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH-LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706 (1102)
Q Consensus 628 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~ 706 (1102)
........+++++||+|||||||.||||+++|+++...+..... .+++.++|+++.++|++|..+++..++.++..|++
T Consensus 167 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~ 246 (579)
T PRK09192 167 DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLS 246 (579)
T ss_pred ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCe
Confidence 11112356789999999999999999999999999988887777 88999999999999999999977778888999999
Q ss_pred EEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC-----ccccccceeeeeccCCCHHHHHHHHHHhCc-
Q psy12852 707 IAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-----EADYSHQVVKMIGVGMRGDIWAKFVKRFHV- 776 (1102)
Q Consensus 707 lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~- 776 (1102)
+++.+. .++..+++.+.++++|++..+|.++..+...... .....++.+++||+++++.+.++|.+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~ 326 (579)
T PRK09192 247 VDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPA 326 (579)
T ss_pred eEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhc
Confidence 987763 3688999999999999877666555554432211 123466778889999999999999988742
Q ss_pred ----chhhhccccccCCcccccCCCCCCc----cc---------------------ccCCCCCCcCCCeeeEEeecCCCC
Q psy12852 777 ----QTIIEFYGATEGNANLVNMDNTEGA----VG---------------------IIPTLLPTFLHPVAIIQFDLVENQ 827 (1102)
Q Consensus 777 ----~~l~n~YG~TE~~~~~~~~~~~~~~----~g---------------------~~~~~~~~~~~~~~~~~~d~~~g~ 827 (1102)
..+++.||+||++..++........ .+ .....+... .+..+.++|++ +.
T Consensus 327 g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-p~~~v~i~d~~-~~ 404 (579)
T PRK09192 327 GFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKAL-PGHEIEIRNEA-GM 404 (579)
T ss_pred CCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcC-CCcEEEEECCC-CC
Confidence 3589999999998766543221100 00 000111111 23344444533 32
Q ss_pred CcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCC
Q psy12852 828 PIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907 (1102)
Q Consensus 828 ~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~d 907 (1102)
.++.|+.||++ +.|+ .++.||++++.+.+.|. .++||+|||+|++ ++|+++|+||+|
T Consensus 405 -----------~~~~g~~Gel~----i~g~-~~~~gY~~~~~~~~~~~------~dgw~~TGDlg~~-~~G~l~~~GR~d 461 (579)
T PRK09192 405 -----------PLPERVVGHIC----VRGP-SLMSGYFRDEESQDVLA------ADGWLDTGDLGYL-LDGYLYITGRAK 461 (579)
T ss_pred -----------CCCCCCEEEEE----ecCC-chhhhhcCCcccccccc------CCceeeccceeeE-ECCEEEEEeccc
Confidence 34566666654 6688 47899998865555443 2679999999999 999999999999
Q ss_pred CeEEeCceeechHHHHHHHHhcCCcc--eeEEEEEEcCCCCCceeEEEEEc--CCCccCHHHHHHHHHccCC-CCCcceE
Q psy12852 908 DTYRWKGENVSTMEVEATISKYLPYT--EFTVYGVKVGDLDGRAGMIAIVD--TSNQVDLKLLVQGLDANLP-AYARPLF 982 (1102)
Q Consensus 908 d~Iki~G~ri~~~eIE~~l~~~~~V~--~a~vv~~~~~~~~~~~~l~~~v~--~~~~~~~~~l~~~l~~~Lp-~~~~P~~ 982 (1102)
|+||++|+||+|.|||++|++||+|. +++|++++++. ++ .+++++. .+...+.++|++++++.++ .|++|..
T Consensus 462 d~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~--~~-~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 538 (579)
T PRK09192 462 DLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN--GE-KIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAA 538 (579)
T ss_pred cEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC--Ce-eEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999998 88888866553 34 4444443 2234567889999999885 6899998
Q ss_pred EEEec--CccCCCCccchhhhhhhcCCC
Q psy12852 983 VRIMK--AIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 983 i~~l~--~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
++++. .||+|++||++|++|++.+..
T Consensus 539 i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 539 VELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred EEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 88775 899999999999999987654
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=485.08 Aligned_cols=487 Identities=20% Similarity=0.244 Sum_probs=388.1
Q ss_pred CCcccchhhcc---------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 496 TNDAAATTVKN---------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 496 ~P~~~Av~~~~---------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
.++.+|++++. +|.||.+.+.++|..|.+.|+++||+|++++|+.+++++++|||.++|++..++-..+++
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~ 157 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA 157 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence 68888887753 299999999999999998899999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhH---------HHHHHhcCC-----CceEEEecCCCCCCCChhHhhccCCCCCCCCCC
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPE---------IEAIRESIP-----DVKLFLLDETKPDLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
..+...++++++++++|.+..... ........+ ....+.+.... .....+..+.......+ ..
T Consensus 158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~a~~~~~--~~ 234 (626)
T KOG1175|consen 158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN-RDLFWSLELKKASPEHP--CV 234 (626)
T ss_pred HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc-ccccHHHHhhhcCCCCC--ce
Confidence 999999999999999997754321 122211111 11111111111 11223333232222222 36
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHH-HHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKV-LLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
..+.+|+.+|+|||||||.||||.+++.+. ...+......++++++|++++...+.+..+..+..+++|++|+|+++.+
T Consensus 235 ~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~ 314 (626)
T KOG1175|consen 235 PVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYE 314 (626)
T ss_pred ecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEc
Confidence 788899999999999999999999998764 5566777788999999999999999999998888899999999999987
Q ss_pred C--CCHhHHHHHHhhcccccccccHHHHHHHHhccCCc---cc-cccceeeeeccCCCHHHHHHHHHHhCcchhhhcccc
Q psy12852 712 K--FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE---AD-YSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785 (1102)
Q Consensus 712 ~--~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---~~-~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 785 (1102)
. +++..+++.+.++++|++...|+.++.|....... .. .+++.+...||++.++....|.+.++...|+..||.
T Consensus 315 g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~q 394 (626)
T KOG1175|consen 315 GPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQ 394 (626)
T ss_pred CCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceee
Confidence 4 69999999999999999999999999876654332 12 456677777999999999999999876569999999
Q ss_pred ccCCcccccC-----CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccc
Q psy12852 786 TEGNANLVNM-----DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860 (1102)
Q Consensus 786 TE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~ 860 (1102)
||++..++.. +..+++.+.+. ....+.++|+ +|..+... ++.|+|+ +.-.=|...
T Consensus 395 tEtG~~~i~~~~g~~p~~pg~~~~p~-------~g~~v~i~de-~g~~~~~~----------~~~G~l~--~~~~~P~~~ 454 (626)
T KOG1175|consen 395 TETGGICITPKPGKLPIKPGSAGKPF-------PGYDVQILDE-NGNELPPS----------TGNGELR--LKPPWPPGM 454 (626)
T ss_pred eccCceeeeccCCCCCcCccccCCCC-------CCcceEEECC-CCCCcCCC----------CceeEEE--EeCCCCccc
Confidence 9999877532 23444444442 4556667777 46665221 1566666 333344357
Q ss_pred ccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEE
Q psy12852 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940 (1102)
Q Consensus 861 ~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~ 940 (1102)
+++|+++++ +|...+|.+..++|.|||.|++|+||+++++||.||+|+++|+|+.+.|||+++.+||.|.|++||+.
T Consensus 455 ~r~~~~n~e---rf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~ 531 (626)
T KOG1175|consen 455 FRTLWGNHE---RFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGS 531 (626)
T ss_pred cccccCCHH---HhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecC
Confidence 889999975 77777777778999999999999999999999999999999999999999999999999999999997
Q ss_pred EcCCCCCceeEEEEEcCCCccC----HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCC
Q psy12852 941 KVGDLDGRAGMIAIVDTSNQVD----LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009 (1102)
Q Consensus 941 ~~~~~~~~~~l~~~v~~~~~~~----~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~ 1009 (1102)
+++. .|+..+++++..+...+ ..+|++++++.+.+|..|+.|++++.||+|.||||.|+.|++.....
T Consensus 532 p~~~-~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 532 PDPI-KGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred CCCC-CCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 7776 67777777764444444 45677788899999999999999999999999999999999876553
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=515.56 Aligned_cols=483 Identities=16% Similarity=0.187 Sum_probs=346.5
Q ss_pred hcccCCcccchhhc------------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 492 NARSTNDAAATTVK------------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~------------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
++..+|+++|+.+. -+|+||..+++++|++|.+.| .+|++|+|+++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vp 88 (578)
T PRK05850 10 RASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVP 88 (578)
T ss_pred HHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCceEEe
Confidence 58889999999752 139999999999999999999 68999999999999999999999999999999
Q ss_pred cCC---CCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCC---CceEEEecCCCCCCCChhHhhccCCCCCCCCCCC
Q psy12852 560 INT---NLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP---DVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 560 ld~---~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
+++ ..+.+++.+++++++++++++++...+.+........ ...++.++.. +... .... ....
T Consensus 89 l~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~-~~~~ 156 (578)
T PRK05850 89 LSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL--------DLDS---PRGS-DARP 156 (578)
T ss_pred cCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--------cccc---CCcc-ccCC
Confidence 997 4578999999999999999999877666554322111 1122222210 0000 0000 1123
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc-cC-----CCCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-LS-----LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
..++++++|+|||||||.||||+++|+++.+.+...... +. ...++++++++|++|..|++..++.+++.|+++
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~ 236 (578)
T PRK05850 157 RDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPA 236 (578)
T ss_pred CCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcE
Confidence 467899999999999999999999999998876655432 22 356889999999999999888899999999999
Q ss_pred EEeCC----CCHhHHHHHHhhcccccccccHHH-HHHHHhccC-----CccccccceeeeeccCCCHHHHHHHHHHhC--
Q psy12852 708 AIRTK----FSASNYFRDCAKYKCNAGIYIGEM-CRYLLASKE-----SEADYSHQVVKMIGVGMRGDIWAKFVKRFH-- 775 (1102)
Q Consensus 708 v~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~-~~~l~~~~~-----~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~-- 775 (1102)
++.++ .++..+++.+.+++++.. .+|++ +..+..... .....+++.++.||+++++++.++|.+.++
T Consensus 237 ~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~ 315 (578)
T PRK05850 237 VLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPF 315 (578)
T ss_pred EEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhc
Confidence 99875 378999999999999865 55554 443332111 112346777888999999999999999874
Q ss_pred ---cchhhhccccccCCcccccCCCCC-----------CcccccCCCC-----C--CcC--CCeeeEEeecCCCCCcCCC
Q psy12852 776 ---VQTIIEFYGATEGNANLVNMDNTE-----------GAVGIIPTLL-----P--TFL--HPVAIIQFDLVENQPIRDP 832 (1102)
Q Consensus 776 ---~~~l~n~YG~TE~~~~~~~~~~~~-----------~~~g~~~~~~-----~--~~~--~~~~~~~~d~~~g~~i~~~ 832 (1102)
...+++.||+||++..+....... .+.|...... + ..+ ....+.++|++++
T Consensus 316 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~~~~ivd~~~~------ 389 (578)
T PRK05850 316 NLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTC------ 389 (578)
T ss_pred CcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCCEEEEEcCCCC------
Confidence 246899999999876544321110 0111110000 0 000 1233444554433
Q ss_pred CCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhh---cccC--CCCeEEEecceeEEecCccEEEEccC
Q psy12852 833 KTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILE---NVFK--PGDKYFLSGDMMVMDELGYLYFKDRT 906 (1102)
Q Consensus 833 ~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~---~~~~--~g~~~yrTGDl~~~~~dG~l~~~GR~ 906 (1102)
.+++.|+.||++ ++|+ .++.||++++ .|.+.|.. +++. ..++||+|||+|+++ ||+++|+||+
T Consensus 390 -----~~~~~g~~Gel~----v~g~-~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~ 458 (578)
T PRK05850 390 -----IECPAGTVGEIW----VHGD-NVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRI 458 (578)
T ss_pred -----cCCCCCCEEEEE----EecC-cccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEccc
Confidence 345778777765 5688 4889999886 67777753 2221 135799999999998 8999999999
Q ss_pred CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC-CccC------HHHHHHHHHccCCC--C
Q psy12852 907 GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS-NQVD------LKLLVQGLDANLPA--Y 977 (1102)
Q Consensus 907 dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~-~~~~------~~~l~~~l~~~Lp~--~ 977 (1102)
||+||++|++|+|.|||++|.+||++. ++|+++++. .++...++++... ...+ ..++++++...++. +
T Consensus 459 ~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~--~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~ 535 (578)
T PRK05850 459 KDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD--GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHG 535 (578)
T ss_pred ccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC--CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999965 677775543 3444444433222 2222 34566666665543 3
Q ss_pred CcceEEEEec--CccCCCCccchhhhhhhcCCC
Q psy12852 978 ARPLFVRIMK--AIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 978 ~~P~~i~~l~--~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
..|..+++++ .||+|++|||+|++|++.+.+
T Consensus 536 ~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 536 LSVADLVLVAPGSIPITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred CCceEEEEeCCCCcCCCCCchHHHHHHHHHHHc
Confidence 4577666664 899999999999999987644
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=523.61 Aligned_cols=477 Identities=16% Similarity=0.135 Sum_probs=346.6
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc---------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHH
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN---------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 552 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~---------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~ 552 (1102)
..+.|.+ +++++|+++|+.+.+ +|+||.++++++|++|.+.|+++|++|+++++|++++++++|||++
T Consensus 51 l~~~l~~---~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 127 (624)
T PRK12582 51 IPHLLAK---WAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ 127 (624)
T ss_pred HHHHHHH---HHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 3444444 588999999998632 4999999999999999999999999999999999999999999999
Q ss_pred cCceEeecCCCCCc-----hhhhhhhhccCceEEEEcCcch-h-HHHHHHhcCCCceEEEecCCC--CCCCChhHhhccC
Q psy12852 553 LGVISALINTNLKK-----QPLVHSISTVKSKAIIVSALYY-P-EIEAIRESIPDVKLFLLDETK--PDLPNLSDLMKTT 623 (1102)
Q Consensus 553 aG~~~vpld~~~p~-----~~l~~il~~~~~~~vi~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 623 (1102)
+|++++|++|.++. +++.+++++++++++|+++... . .+..+. . ...+++.++... .....+.++....
T Consensus 128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 205 (624)
T PRK12582 128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALD-L-LDVTVVHVTGPGEGIASIAFADLAATP 205 (624)
T ss_pred cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhh-h-cCceEEEEcCCCcccccccHHHHhhcC
Confidence 99999999999985 8999999999999999986421 1 111111 1 123444443321 1123344443322
Q ss_pred CCCC-CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCC---CcEEEEecCchhhhhHHHHHHh
Q psy12852 624 PASE-VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS---GDVIYNCLPMYHSAGGLIGTIP 699 (1102)
Q Consensus 624 ~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~---~d~~l~~~pl~~~~~~~~~i~~ 699 (1102)
.... ........++++++|+|||||||.||||++||+++..++......++... +++++.++|++|.+++...++.
T Consensus 206 ~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~ 285 (624)
T PRK12582 206 PTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNG 285 (624)
T ss_pred CcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHH
Confidence 1110 01112356789999999999999999999999999887776655555444 5899999999999997777888
Q ss_pred HhhcCceEEEeCC-CCH---hHHHHHHhhcccccccccHHHHHHHHhccCCc------cccccceeeeeccCCCHHHHHH
Q psy12852 700 ALILGSSIAIRTK-FSA---SNYFRDCAKYKCNAGIYIGEMCRYLLASKESE------ADYSHQVVKMIGVGMRGDIWAK 769 (1102)
Q Consensus 700 ~l~~G~~lv~~~~-~~~---~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------~~~~l~~~~~~Ge~l~~~~~~~ 769 (1102)
++..|+++++.+. +++ ..+++.++++++|++.++|++++.|+...... ...+++.+++||+++++++.+.
T Consensus 286 ~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~ 365 (624)
T PRK12582 286 LLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYER 365 (624)
T ss_pred HHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHH
Confidence 9999999999763 333 45677788999999999999999886542211 1346888899999999999999
Q ss_pred HHHHh----C-cchhhhccccccCCcccccCC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccccc
Q psy12852 770 FVKRF----H-VQTIIEFYGATEGNANLVNMD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841 (1102)
Q Consensus 770 ~~~~~----~-~~~l~n~YG~TE~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~ 841 (1102)
|.+.+ + .+.+++.||+||++.+++... ...+++|.+.+ +. ..+.++
T Consensus 366 ~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~p-----------------------g~---~v~i~~ 419 (624)
T PRK12582 366 MQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLP-----------------------GV---ELKLAP 419 (624)
T ss_pred HHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCC-----------------------Cc---EEEEcc
Confidence 98863 2 247999999999987655211 12233333321 11 012235
Q ss_pred CCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEE-e---cCccEEEEccCCCeEEe-Cce
Q psy12852 842 YNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVM-D---ELGYLYFKDRTGDTYRW-KGE 915 (1102)
Q Consensus 842 ~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~-~---~dG~l~~~GR~dd~Iki-~G~ 915 (1102)
.|++||++ ++|+ .++.||++++ .|.+.|. +++||+|||+|++ | ++|+|+|+||+||+||+ +|+
T Consensus 420 ~G~~GEl~----vrg~-~v~~GY~~~p~~t~~~f~------~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~ 488 (624)
T PRK12582 420 VGDKYEVR----VKGP-NVTPGYHKDPELTAAAFD------EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGT 488 (624)
T ss_pred CCCceEEE----EECC-cccccccCCccchhhhcC------ccCCccccceEEecCCcCCCCceEEeccchhhEecCCCc
Confidence 67777765 5688 5899999887 5555552 3789999999999 4 56999999999999997 799
Q ss_pred eechHHHH--HHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCC----------C------ccCHHHHHHHHHcc----
Q psy12852 916 NVSTMEVE--ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS----------N------QVDLKLLVQGLDAN---- 973 (1102)
Q Consensus 916 ri~~~eIE--~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~----------~------~~~~~~l~~~l~~~---- 973 (1102)
+|+|.+|| .++.+||.|.+|+|+++++ ..+.+++.+. . ..+.++++++++.+
T Consensus 489 ~i~p~~iE~e~~l~~~p~V~~a~VvG~~~------~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 562 (624)
T PRK12582 489 WVSVGTLRPDAVAACSPVIHDAVVAGQDR------AFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAH 562 (624)
T ss_pred EechHHHHHHHHHhcCcchheEEEEcCCC------CcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHH
Confidence 99998885 6889999999999998432 2233332211 0 11334566666554
Q ss_pred ---CCCCC-cceEEEEecCccCC------CCccchhhhhhhcC
Q psy12852 974 ---LPAYA-RPLFVRIMKAIEMT------GTFKIKKIQLQNEG 1006 (1102)
Q Consensus 974 ---Lp~~~-~P~~i~~l~~lP~t------~~GKidr~~L~~~~ 1006 (1102)
+|.|. .|.++++++++|++ ++||+.|+...+.+
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y 605 (624)
T PRK12582 563 NAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERR 605 (624)
T ss_pred HhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHH
Confidence 45555 99999999998755 55566666665543
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=479.57 Aligned_cols=423 Identities=22% Similarity=0.270 Sum_probs=320.5
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch-------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL-------EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~-------Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
....+.+ +++.+|+.+|+..... |+|+.+++.++|+.|++.|+.+||+|+|++.|+++|+++.+||+.+|
T Consensus 18 ~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g 94 (613)
T COG1022 18 LPKRLAE---RVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94 (613)
T ss_pred HHHHHHH---HhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 3444555 4888999888875432 99999999999999999999779999999999999999999999999
Q ss_pred ceEeecCCCCCchhhhhhhhccCceEEEEcCcch-hHHHHHHhcCCC---ceEEE--ecCCC-CCCCChhH-----hh--
Q psy12852 555 VISALINTNLKKQPLVHSISTVKSKAIIVSALYY-PEIEAIRESIPD---VKLFL--LDETK-PDLPNLSD-----LM-- 620 (1102)
Q Consensus 555 ~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~-~~~~~~~~~~~~---~~~~~--~~~~~-~~~~~~~~-----~~-- 620 (1102)
++.||+.++.+++.++++|+++++++++++.... ..+..+....+. ..... .+... .....++. ..
T Consensus 95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (613)
T COG1022 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF 174 (613)
T ss_pred CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh
Confidence 9999999999999999999999999999988543 333333332211 00000 00000 00000000 00
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC-CCCCcEEEEecCchhhhhHHHHHHh
Q psy12852 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-LGSGDVIYNCLPMYHSAGGLIGTIP 699 (1102)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~~~~~~i~~ 699 (1102)
............+..++|+|.|+|||||||.|||||+||+|++.++......++ ++++|+.++++|+.|.+..+++...
T Consensus 175 ~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~ 254 (613)
T COG1022 175 LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGL 254 (613)
T ss_pred hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHH
Confidence 000001111124678999999999999999999999999999999999999997 9999999999999999986655555
Q ss_pred HhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhc--------cC--------------------------
Q psy12852 700 ALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS--------KE-------------------------- 745 (1102)
Q Consensus 700 ~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~--------~~-------------------------- 745 (1102)
.+..|+++.. ..++..+.+.+++.++|.++.+|.+++.+.+. +.
T Consensus 255 ~~~~g~~~~~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~ 332 (613)
T COG1022 255 ALYGGVTVLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGP 332 (613)
T ss_pred HhhcceEEEe--cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 5555555544 45899999999999999999999998876211 00
Q ss_pred ---------------C-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---CCCcccccC
Q psy12852 746 ---------------S-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---TEGAVGIIP 806 (1102)
Q Consensus 746 ---------------~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~g~~~ 806 (1102)
. ......+..++||.++++++...++.. + +.++++||+|||+..++..+. ..+++|.+.
T Consensus 333 ~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-G-i~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~ 410 (613)
T COG1022 333 LSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-G-IPILEGYGLTETSAVVSVNPPDRFVLGTVGKPL 410 (613)
T ss_pred cchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-C-CCeEEEecccccccceEEccccCcccCCcCCcC
Confidence 0 001245667889999999999877665 4 499999999999988876643 345555543
Q ss_pred CCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeE
Q psy12852 807 TLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKY 885 (1102)
Q Consensus 807 ~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~ 885 (1102)
++ ..+ .....|| |.++|| ++|.||+++| .|++.|.. +||
T Consensus 411 p~-----~ev------------------------KI~d~GE----ilVRG~-~Vm~GYyk~pe~Taeaf~~------DGW 450 (613)
T COG1022 411 PG-----IEV------------------------KIADDGE----ILVRGP-NVMKGYYKNPEATAEAFTE------DGW 450 (613)
T ss_pred CC-----ceE------------------------EEccCce----EEEecc-hhcchhcCChHHHhhhccc------cCC
Confidence 21 111 2223455 556799 6899999887 67777754 899
Q ss_pred EEecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcC
Q psy12852 886 FLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT 957 (1102)
Q Consensus 886 yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~ 957 (1102)
|+|||+|.+|++|+|.++||++|.||. +|.+|+|+.||..+.++|-|.+++|++ +++..+.+++.+
T Consensus 451 f~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg------~~k~~~~AlIvp 517 (613)
T COG1022 451 FRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG------DDKKFLVALIVP 517 (613)
T ss_pred cccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe------cCCcceEEEEeC
Confidence 999999999999999999999999999 999999999999999999999999997 345566666644
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=494.37 Aligned_cols=482 Identities=17% Similarity=0.182 Sum_probs=358.0
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch-----HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCce
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL-----EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~-----Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~ 556 (1102)
.++.++.. |...|+.+++.+.+. |.||+++++++|++|.+.|+++||+|+|+++++++++++++||+++|++
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v 80 (545)
T PRK07768 4 FTEKMYAN---ARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGAS 80 (545)
T ss_pred HHHHHHHH---hhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcc
Confidence 34445544 888999999866553 9999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCchhh-------hhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCC
Q psy12852 557 SALINTNLKKQPL-------VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 557 ~vpld~~~p~~~l-------~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1102)
++|+++..+.+++ .++++.++++++++++.....+..+... ...++ .++++....+.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~----------~~~~l~~~~~~---- 144 (545)
T PRK07768 81 LTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK--GIRVL----------TVADLLAADPI---- 144 (545)
T ss_pred ccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc--CCcee----------ehhhhcccCCC----
Confidence 9999999887665 4467778999999987654433322111 12222 22233222111
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCC-cEEEEecCchhhhhHHHHHHhHhhcCceEE
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSG-DVIYNCLPMYHSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv 708 (1102)
......++++++|+|||||||+||||+++|+++...+......+++..+ |++++.+|++|..+++..++.++..|++++
T Consensus 145 ~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v 224 (545)
T PRK07768 145 DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELV 224 (545)
T ss_pred CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEE
Confidence 1134567899999999999999999999999999988888888888876 899999999999997767788899999998
Q ss_pred EeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhcc----C--CccccccceeeeeccCCCHHHHHHHHHH---hC
Q psy12852 709 IRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASK----E--SEADYSHQVVKMIGVGMRGDIWAKFVKR---FH 775 (1102)
Q Consensus 709 ~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~----~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~---~~ 775 (1102)
+.++ .++..+.+.++++++|++..+|.++..+.... . ......++.++.+|+++++++.+.+.+. ++
T Consensus 225 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g 304 (545)
T PRK07768 225 KVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFG 304 (545)
T ss_pred EeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcC
Confidence 8865 37888999999999999888887776654321 1 1233467888889999999999998874 33
Q ss_pred --cchhhhccccccCCcccccCCCCCCc-----------------------ccccCCCCCCcCCCeeeEEeecCCCCCcC
Q psy12852 776 --VQTIIEFYGATEGNANLVNMDNTEGA-----------------------VGIIPTLLPTFLHPVAIIQFDLVENQPIR 830 (1102)
Q Consensus 776 --~~~l~n~YG~TE~~~~~~~~~~~~~~-----------------------~g~~~~~~~~~~~~~~~~~~d~~~g~~i~ 830 (1102)
...+++.||+||++..++........ ...+...+.+. ..+.+.++|++ |.
T Consensus 305 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~g~~~~i~~~~-~~--- 379 (545)
T PRK07768 305 LRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPL-PGLEVRVVDED-GQ--- 379 (545)
T ss_pred CCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCC-CCCEEEEECCC-CC---
Confidence 23599999999998765432211000 00000111111 23344445533 33
Q ss_pred CCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeE
Q psy12852 831 DPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTY 910 (1102)
Q Consensus 831 ~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~I 910 (1102)
+++.|+.||++ +.|+ .++.||++.+.+...+ .+++||+|||+|++++||.++++||+||+|
T Consensus 380 --------~~~~g~~Gel~----v~~~-~~~~gy~~~~~~~~~~------~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i 440 (545)
T PRK07768 380 --------VLPPRGVGVIE----LRGE-SVTPGYLTMDGFIPAQ------DADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440 (545)
T ss_pred --------CCCCCCEEEEE----EccC-cccccccCCCCCcccc------cCCCeeeccceEEEecCCEEEEEccccceE
Confidence 34566666654 5687 4788999865433221 236799999999999999999999999999
Q ss_pred EeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccC---HHHHHHHHHccCCCC--CcceEEEE
Q psy12852 911 RWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVD---LKLLVQGLDANLPAY--ARPLFVRI 985 (1102)
Q Consensus 911 ki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~---~~~l~~~l~~~Lp~~--~~P~~i~~ 985 (1102)
|++|.+|+|.|||.+|.++|+|.+++|+++..++......+++++......+ ..++.+++++.++.+ ..|..+.+
T Consensus 441 ~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~ 520 (545)
T PRK07768 441 IMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVV 520 (545)
T ss_pred EECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 9999999999999999999999998888776555444444555543322222 335677777776654 67888888
Q ss_pred ec--CccCCCCccchhhhhhhcC
Q psy12852 986 MK--AIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 986 l~--~lP~t~~GKidr~~L~~~~ 1006 (1102)
++ .||+|++||++|+.|+++.
T Consensus 521 v~~~~lP~t~~GKi~r~~l~~~~ 543 (545)
T PRK07768 521 LGPGSIPKTPSGKLRRANAAELV 543 (545)
T ss_pred eCCCcCCCCCchhHHHHHHHHhc
Confidence 86 8999999999999999764
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=455.98 Aligned_cols=488 Identities=19% Similarity=0.236 Sum_probs=363.4
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc-----------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN-----------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~-----------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
.+..++|.. .+..+|+.+++.... +|.|..+++.++|..|++.|+++++.|||+.-|++||+++.+|
T Consensus 75 ~T~~~~f~~--~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a 152 (691)
T KOG1256|consen 75 LTLYEGFRR--SVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMA 152 (691)
T ss_pred ccHHHHhhc--chhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHH
Confidence 445555555 689999988886544 2999999999999999999999999999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEc-CcchhHHHHHHhc--CCCceEEE-ecCCC-------CC----CC
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVS-ALYYPEIEAIRES--IPDVKLFL-LDETK-------PD----LP 614 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~-~~~~~~~~~~~~~--~~~~~~~~-~~~~~-------~~----~~ 614 (1102)
|...|.+.|||..+.+++.+++|++.+.+.+++++ +...+.+.+.... .+.++.++ ++... .+ +.
T Consensus 153 ~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~ 232 (691)
T KOG1256|consen 153 CYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVY 232 (691)
T ss_pred HHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEE
Confidence 99999999999999999999999999999999999 4445555554442 45555443 44332 12 56
Q ss_pred ChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhh---hhhc---cCCCCCcEEEEecCch
Q psy12852 615 NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV---GKHL---LSLGSGDVIYNCLPMY 688 (1102)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~---~~~~---~~~~~~d~~l~~~pl~ 688 (1102)
+++++..........+..+..|+|.|.|+|||||||.|||||+||+|++..+.. .... .....+|++++++|++
T Consensus 233 S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLA 312 (691)
T KOG1256|consen 233 SWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLA 312 (691)
T ss_pred EHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHH
Confidence 677777666433333225789999999999999999999999999999986543 1111 1233469999999999
Q ss_pred hhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhc-------------------------
Q psy12852 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS------------------------- 743 (1102)
Q Consensus 689 ~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~------------------------- 743 (1102)
|.+..+.+.+. +..|+++.+... |+..+.+.|++.++|.+.++|.+++.+.+.
T Consensus 313 Hi~er~~~~~~-~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~ 390 (691)
T KOG1256|consen 313 HIFERVVELYT-FYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLE 390 (691)
T ss_pred HHHHHHHHHhH-hhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99996666554 589999999874 899999999999999999999998776211
Q ss_pred -----cCCc-c----------------ccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc-CC--CC
Q psy12852 744 -----KESE-A----------------DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN-MD--NT 798 (1102)
Q Consensus 744 -----~~~~-~----------------~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~-~~--~~ 798 (1102)
+... . -...+++++|++|+++++..-++..+++ +++++||.|||+..++. .. ..
T Consensus 391 ~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~-~v~eGYGlTEts~g~~~~~~~d~~ 469 (691)
T KOG1256|consen 391 HRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGC-RVLEGYGLTETSAGTTLTLPGDNV 469 (691)
T ss_pred HHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCc-eeeecccccccCCceEeccCCCCC
Confidence 0000 0 0134667888999999999999988766 99999999999955442 22 23
Q ss_pred CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhc
Q psy12852 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILEN 877 (1102)
Q Consensus 799 ~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~ 877 (1102)
.+++|.|.++ ..++++.+.+- +....|..|| |+++|+ .+|.||+++| +|.+.| +
T Consensus 470 lgsvG~p~p~-----~~vKL~dvpe~-------------ny~a~~~~GE----IcirG~-~Vf~GYyK~p~~T~e~i-d- 524 (691)
T KOG1256|consen 470 LGSVGPPVPG-----NEVKLVDVPEM-------------NYDADGSKGE----ICVRGP-NVFMGYYKDPEKTAEAI-D- 524 (691)
T ss_pred CCCcCCcccC-----ceEEEechHHh-------------CcCcCCCcce----EEEecc-hhceeccCChHHHhhhh-c-
Confidence 4555555332 44444333222 1123344455 557799 6899999887 555554 3
Q ss_pred ccCCCCeEEEecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEc
Q psy12852 878 VFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD 956 (1102)
Q Consensus 878 ~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~ 956 (1102)
.+||++|||+|+|+++|.|.++||+++.+|. .|+.|.|..||++..+.+.|.+.+|.+ ...+..++++++
T Consensus 525 ----eDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g-----~s~~~~LvaiVv 595 (691)
T KOG1256|consen 525 ----EDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLG-----DSLRSFLVAIVV 595 (691)
T ss_pred ----cccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEEC-----CcchhcEEEEEe
Confidence 3899999999999999999999999999999 999999999999999999999999986 234566777775
Q ss_pred CCCccCH--------------------------HHHHHHH-HccCCCCCcceEEEE------ecCccCCCCccchhhhhh
Q psy12852 957 TSNQVDL--------------------------KLLVQGL-DANLPAYARPLFVRI------MKAIEMTGTFKIKKIQLQ 1003 (1102)
Q Consensus 957 ~~~~~~~--------------------------~~l~~~l-~~~Lp~~~~P~~i~~------l~~lP~t~~GKidr~~L~ 1003 (1102)
++.+... +++.+.. .+.|..+..-..|.. ++.=-+||+-|+.|..|.
T Consensus 596 pd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~ 675 (691)
T KOG1256|consen 596 PDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLL 675 (691)
T ss_pred cChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHH
Confidence 5332111 1111111 133555555555555 333458999999999998
Q ss_pred hcCC
Q psy12852 1004 NEGF 1007 (1102)
Q Consensus 1004 ~~~~ 1007 (1102)
+.+.
T Consensus 676 ~~yk 679 (691)
T KOG1256|consen 676 KYYK 679 (691)
T ss_pred HHHH
Confidence 7653
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=487.11 Aligned_cols=464 Identities=16% Similarity=0.192 Sum_probs=380.6
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|....|+... ++++..++..++..++. +|+..+++++++.+.++ ..||.+...++...+++..|..
T Consensus 167 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-----~~~~~~~~l~ll~~~e~----~~~~~~~~~~~~~~~i~~~f~~- 235 (642)
T COG1020 167 SFDYARELFDAET-IERELRHFLQLLAALAD-----APRTSLSALPLLLPSER----EVWNALAAPIPLRLTIHLLFEE- 235 (642)
T ss_pred EEEeecccCCHHH-HHHHHHHHHHHHHHHHh-----CcccCcccCCCCCHHHH----hhccccccCCCccchHHHHHHH-
Confidence 6789999999999 99999999999999999 88899999999999998 3477666777766667777666
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
++.+.|+++|+.+.+. |+||+.+++++|+.|.+.|+++++.|+++++++.+++++++|++|+|++|+|+||.+|.+
T Consensus 236 -~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~ 314 (642)
T COG1020 236 -QAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAE 314 (642)
T ss_pred -HHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHH
Confidence 7999999999999633 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 647 (1102)
|+.+++++++++.+++.......... .+. +.++. .........+. .....+++.+|++||||
T Consensus 315 r~~~~l~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~----------~~~~~~~~~~~-~~~~~~~~~ayiiytsg 376 (642)
T COG1020 315 RLAYILEDSRPTLLLTQAHLRVDDVG----LPG---LALDD----------ALSEIPDTDPI-PQALLGDALAYIIYTSG 376 (642)
T ss_pred HHHHHHhhcCccEEEecccccccccc----CCc---ccccc----------ccccCCccCcc-cccCCCCCeEEEEEccC
Confidence 99999999999999998432221100 000 11111 00000111111 12345689999999999
Q ss_pred CCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhh
Q psy12852 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAK 724 (1102)
Q Consensus 648 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~ 724 (1102)
|||+||||+++|+++.+.+.+....++++.+|+++...+++|+.+ ++++|.++..|+++++.+. .++..+.+.+.+
T Consensus 377 stg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~-~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~ 455 (642)
T COG1020 377 STGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDAS-VFEIFGALLEGARLVLAPALLQVDPAALLELLEA 455 (642)
T ss_pred CCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchh-HHHHHHHHhCCCEEEecCccccCCHHHHHHHHHH
Confidence 999999999999999999999988899999999999999999987 9999999999999999886 689999999999
Q ss_pred cccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhC-cchhhhccccccCCcccccCCCCC
Q psy12852 725 YKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFH-VQTIIEFYGATEGNANLVNMDNTE 799 (1102)
Q Consensus 725 ~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~ 799 (1102)
+++|++..+|+++..++..... .....++.+++|||.++..+..++....+ ...+.|.||+||+++.++.+....
T Consensus 456 ~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~ 535 (642)
T COG1020 456 QGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISA 535 (642)
T ss_pred cCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEccc
Confidence 9999999999999999876222 11224788899999999999999988765 458999999999888776555433
Q ss_pred CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcc
Q psy12852 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENV 878 (1102)
Q Consensus 800 ~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~ 878 (1102)
...+.++.+.|. .+...+++|.. .+.+|.|++||++ +.|. .++.||++++ .|.++|+.+
T Consensus 536 ~~~~~~piG~p~--~n~~~~ild~~------------~~~~p~gv~gel~----i~g~-~~a~gy~~~p~lt~~~f~~~- 595 (642)
T COG1020 536 ELESRVPIGRPV--ANTQLYILDQG------------LRPLPLGVPGELY----IAGL-GLALGYLNRPDLTAERFIAL- 595 (642)
T ss_pred ccCCCCCcceee--CCCeEEEECCC------------CCcCCCCCCeeeE----ECCc-chhhhhcCChhhhHHHhhhc-
Confidence 332233333333 33556666622 3567899998876 4566 3678999987 899999875
Q ss_pred cCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcC
Q psy12852 879 FKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930 (1102)
Q Consensus 879 ~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~ 930 (1102)
++|+|||++|+++||.++++||.|+|||++|+||+++|||..+.++|
T Consensus 596 -----~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 596 -----RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred -----cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 59999999999999999999999999999999999999999998875
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=416.65 Aligned_cols=470 Identities=20% Similarity=0.253 Sum_probs=352.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCE-EEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCc
Q psy12852 508 EAQIDEYSNKIARILQDDGFKKGDV-LALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSAL 586 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv~~g~~-V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~ 586 (1102)
|.|+..++..+|+.|.+.|+++++. |+|+.+.+.+|+++.+||++.|...|.+...+..+.+.+-|.+++++.++|+.+
T Consensus 92 y~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~ 171 (678)
T KOG1180|consen 92 YNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSE 171 (678)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHH
Confidence 9999999999999999999997777 999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcCCCceEEEecCC-C---------------CCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCC
Q psy12852 587 YYPEIEAIRESIPDVKLFLLDET-K---------------PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTG 650 (1102)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG 650 (1102)
..+.+.......+.++.+..-+. + -...+++++.......... ..+..|+|+|+|||||||||
T Consensus 172 LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~-~~~P~p~Dia~IMYTSGSTG 250 (678)
T KOG1180|consen 172 LLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIP-PHPPKPSDIACIMYTSGSTG 250 (678)
T ss_pred HHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCC-CCCCCCCceEEEEEcCCCCC
Confidence 98888777777777665443331 1 1234555665555444322 24458899999999999999
Q ss_pred CCceEEeccHHHHHhhhhhhhcc-CCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCC---CH-----hHHHHH
Q psy12852 651 LPKAAIMPNFKVLLGGQVGKHLL-SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKF---SA-----SNYFRD 721 (1102)
Q Consensus 651 ~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~---~~-----~~l~~~ 721 (1102)
.||||+++|+|+++.+....... .+++.|+++.++|+.|..-+.++ +.++..|+++-..+.. |. ...-..
T Consensus 251 ~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD 329 (678)
T KOG1180|consen 251 LPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGD 329 (678)
T ss_pred CCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCcceecccchhhccCCcCc
Confidence 99999999999999888776554 78999999999999999985555 5679999998887652 11 112234
Q ss_pred HhhcccccccccHHHHHHHHhc--------------------------cC----C--------------ccccccceeee
Q psy12852 722 CAKYKCNAGIYIGEMCRYLLAS--------------------------KE----S--------------EADYSHQVVKM 757 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~~~--------------------------~~----~--------------~~~~~l~~~~~ 757 (1102)
+...++|++.++|.++..+.+. -. . .....+|.++.
T Consensus 330 ~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~Ls 409 (678)
T KOG1180|consen 330 LTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILS 409 (678)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEe
Confidence 5677999999999987765210 00 0 00125688899
Q ss_pred eccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccc
Q psy12852 758 IGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837 (1102)
Q Consensus 758 ~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~ 837 (1102)
||.+++++..+-+.-.+. +++.++||.||++..++..+...-+.|++.+..+. +.+..+|-..|-+....
T Consensus 410 GGapLS~dtQrF~nic~C-~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c----~eiKLvdw~EgGY~~~~----- 479 (678)
T KOG1180|consen 410 GGAPLSPDTQRFMNICFC-CPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPC----CEIKLVDWEEGGYFAKN----- 479 (678)
T ss_pred CCCCCCHHHHHHHHHhcc-ccccccccccchhcccEecChhhcccccccCCccc----eEEEEEEhhhcCccCCC-----
Confidence 999999998876666664 48999999999998888766555555544332222 23333443333333211
Q ss_pred ccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEe-Cce
Q psy12852 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGE 915 (1102)
Q Consensus 838 ~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~ 915 (1102)
. | -.| ||+++|+. +..||++++ .|.+.|.. .+|.+||+|||+|+|.+||.|.++.|++|.||. +|+
T Consensus 480 ~--P--PrG----EI~i~G~~-vt~gY~kn~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GE 547 (678)
T KOG1180|consen 480 K--P--PRG----EILIGGPN-VTMGYYKNEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGE 547 (678)
T ss_pred C--C--CCc----eEEecCCc-cChhhhCChhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhhcccc
Confidence 1 1 234 46688995 677777665 78888875 357889999999999999999999999999999 999
Q ss_pred eechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCc----------cCH-----------------HHHHH
Q psy12852 916 NVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQ----------VDL-----------------KLLVQ 968 (1102)
Q Consensus 916 ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~----------~~~-----------------~~l~~ 968 (1102)
.|+++-||++++..|.|...+|.+ + ......+++|+++.. ++. .+|.+
T Consensus 548 YIsL~KvEa~l~s~p~V~NICvyA--d---~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~ 622 (678)
T KOG1180|consen 548 YISLGKVEAALRSSPYVDNICVYA--D---SNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIE 622 (678)
T ss_pred eeehHHHHHHHhcCcchhheEEec--c---cccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999987 2 234455555554421 111 12222
Q ss_pred HH-HccCCCCCcceEEEEecCc--c----CCCCccchhhhhhhcC
Q psy12852 969 GL-DANLPAYARPLFVRIMKAI--E----MTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 969 ~l-~~~Lp~~~~P~~i~~l~~l--P----~t~~GKidr~~L~~~~ 1006 (1102)
.- .++|....+|..|++.++- | .|+.-|+.|+.+...+
T Consensus 623 ~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~ 667 (678)
T KOG1180|consen 623 AAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAY 667 (678)
T ss_pred HHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHH
Confidence 22 5679999999999877552 2 3344489999887653
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=449.86 Aligned_cols=387 Identities=25% Similarity=0.382 Sum_probs=301.2
Q ss_pred hcccCCcccchhh-cch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTV-KNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~-~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++||++|+++ ... |+||.++++++|..|.+.|+++|++|+|+++|+.+++++++||+++|++++|++|.++.+
T Consensus 4 ~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~ 83 (417)
T PF00501_consen 4 QAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSED 83 (417)
T ss_dssp HHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHH
T ss_pred HHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccccccc
Confidence 6999999999988 444 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEE----cCcchhHHHHHHhcC-CCceEEEecCCCCCCCChhHhhccCCCCCCCCCCC-CCCCCeEE
Q psy12852 568 PLVHSISTVKSKAIIV----SALYYPEIEAIRESI-PDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP-LQTSDSLL 641 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~ 641 (1102)
++.++++.++++++|+ +......+....... ....++.++..... ....+.......... .+ ..++++++
T Consensus 84 ~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~ 159 (417)
T PF00501_consen 84 ELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLP--KKEALKSASLSDEPQ--SPEDSPDDPAF 159 (417)
T ss_dssp HHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCT--TCHHHHHHHHCHCSH--STTHTTTSEEE
T ss_pred cccccccccceeEEEEeccccccccccchhhhcccccccccccccccccc--ccccccccccccccc--cCCCCccceeE
Confidence 9999999999999997 222222233333322 22344455432211 111111100000000 00 15689999
Q ss_pred EEECCCCCCCCceEEeccHHHHHhhhhhh--hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCC---Hh
Q psy12852 642 YIYTSGTTGLPKAAIMPNFKVLLGGQVGK--HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFS---AS 716 (1102)
Q Consensus 642 ii~TSGSTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~---~~ 716 (1102)
++|||||||.||+|.++|+++.+.+..+. ..++++ |++++.+|++|..+++..++.++..|+++++++... ++
T Consensus 160 i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~ 237 (417)
T PF00501_consen 160 ILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPE 237 (417)
T ss_dssp EEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHH
T ss_pred eeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999877754 233444 699999999999996699999999999999999744 47
Q ss_pred HHHHHHhhcccccccccHHHHHHHHhccCC------ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKES------EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 717 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
.+++.++++++|++.++|++++.|++.... .....+|.++++|+++++++.+++.+.++.+.+++.||+||++.
T Consensus 238 ~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 317 (417)
T PF00501_consen 238 SLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGS 317 (417)
T ss_dssp HHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSS
T ss_pred cchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccccccce
Confidence 789999999999999999999999884322 24456888889999999999999999998778999999999999
Q ss_pred ccccCC--C---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 791 NLVNMD--N---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 791 ~~~~~~--~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
.++... . ..+++|.+. ..+.+.++|+++++++ +.|++||++ ++|| .++.||+
T Consensus 318 ~~~~~~~~~~~~~~~~~G~~~-------~~~~~~ivd~~~~~~~-----------~~g~~Gei~----i~~~-~~~~gy~ 374 (417)
T PF00501_consen 318 IATIRPPEDDIEKPGSVGKPL-------PGVEVKIVDPNTGEPL-----------PPGEPGEIV----IRGP-NVFSGYY 374 (417)
T ss_dssp EEEEEETTTHHSSTTSEBEES-------TTEEEEEECTTTSSBE-----------STTSEEEEE----EEST-TSBSEET
T ss_pred eeecccccccccccccccccc-------cccccccccccccccc-----------ccccccccc----ccCC-ccceeee
Confidence 887442 1 334555543 3567778888877655 667776655 5688 5889999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~ 913 (1102)
+++ .+.++|.. ++||+|||+|++|+||.++++||.||+||+|
T Consensus 375 ~~~~~~~~~~~~------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 375 NDPELTAEAFID------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp TBHHHHHHHEET------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred cccccccccccc------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 986 56666652 4699999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=435.12 Aligned_cols=393 Identities=19% Similarity=0.227 Sum_probs=317.0
Q ss_pred hHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcC
Q psy12852 507 LEAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585 (1102)
Q Consensus 507 ~Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~ 585 (1102)
+|.||.+.++++|+.|.+ .|+++|++|+++++|+.+++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 389999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHh
Q psy12852 586 LYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG 665 (1102)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~ 665 (1102)
.....+.... ......+.. ......... ..........++++++++|||||||.||+|.++|+++...
T Consensus 81 ~~~~~~~~~~-----~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~ 148 (408)
T TIGR01733 81 ALASRLAGLV-----LPIILVDPL------ELAALDDAP-APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNL 148 (408)
T ss_pred chhhhccccC-----CceEEechh------hhhhccccc-ccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHH
Confidence 7655443211 112222110 000000000 0011111245789999999999999999999999999999
Q ss_pred hhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCC---HhHHHHHHhhcccccccccHHHHHHHHh
Q psy12852 666 GQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFS---ASNYFRDCAKYKCNAGIYIGEMCRYLLA 742 (1102)
Q Consensus 666 ~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~---~~~l~~~i~~~~vt~~~~~Ps~~~~l~~ 742 (1102)
+......+++.++|+++...|++|..+ +..++.++..|+++++.++.. +..+.+.++++++|.+.++|++++.|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~ 227 (408)
T TIGR01733 149 LAWLARRYGLDPDDRVLQFASLSFDAS-VEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAA 227 (408)
T ss_pred HHHHHHhcCCCCCceEEEecCCccchh-HHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHH
Confidence 998888999999999999999999988 888999999999999988743 6889999999999999999999999988
Q ss_pred ccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCC--------CCcccccCCCCCCcCC
Q psy12852 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT--------EGAVGIIPTLLPTFLH 814 (1102)
Q Consensus 743 ~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--------~~~~g~~~~~~~~~~~ 814 (1102)
... .....++.++.||+++++++.+.|.+.++...+++.||+||++.+++..... ..++|.+. .
T Consensus 228 ~~~-~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~-------~ 299 (408)
T TIGR01733 228 ALP-PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPL-------A 299 (408)
T ss_pred hhh-hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCccc-------C
Confidence 755 4456788889999999999999999999866899999999999877532211 22233321 3
Q ss_pred CeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCC--eEEEecce
Q psy12852 815 PVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGD--KYFLSGDM 891 (1102)
Q Consensus 815 ~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~--~~yrTGDl 891 (1102)
...+.++|++ ++ .++.|+.||++ +.|+ .++.||++++ .+.+.|..+++...+ +||+|||+
T Consensus 300 ~~~~~i~~~~-~~-----------~~~~g~~Gel~----v~~~-~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl 362 (408)
T TIGR01733 300 NTRLYVLDDD-LR-----------PVPVGVVGELY----IGGP-GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDL 362 (408)
T ss_pred CceEEEECCC-CC-----------CCCCCCceEEE----ecCc-cccccccCChhhhhcceeeCCCCCCCCceEEECCce
Confidence 3445555554 43 34667767655 6688 5888999876 677777766665444 49999999
Q ss_pred eEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEE
Q psy12852 892 MVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937 (1102)
Q Consensus 892 ~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~v 937 (1102)
|+++++|++++.||.||+|+++|++|+|.|||+.|..+++|.+|+|
T Consensus 363 ~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 363 VRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9999999999999999999999999999999999999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=431.80 Aligned_cols=566 Identities=14% Similarity=0.112 Sum_probs=375.6
Q ss_pred cccCCcccchhhcc-----------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 493 ARSTNDAAATTVKN-----------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 493 a~~~P~~~Av~~~~-----------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
+...|+..+..+.- +|+.....++.+|+.|...|...|+.|++++.++.++++.+++++++|.+|+|+|
T Consensus 46 ~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~id 125 (1032)
T KOG1178|consen 46 LAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPID 125 (1032)
T ss_pred HhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEec
Confidence 55556655554321 2899999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----chhhhhh---hhccCceEEEEcCcchhHHHHHH-hcCCCceEEEecCCCCCCCChhHhhccCCCC-CCCCCC
Q psy12852 562 TNLK----KQPLVHS---ISTVKSKAIIVSALYYPEIEAIR-ESIPDVKLFLLDETKPDLPNLSDLMKTTPAS-EVKPSE 632 (1102)
Q Consensus 562 ~~~p----~~~l~~i---l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 632 (1102)
|++| .+++..+ +......++. . .+...... +..+...+... .+.+...... ......
T Consensus 126 p~~~~~e~~~~~~~ia~~~~s~~~~i~~--~--l~i~~~~~~~~~~~~sv~~~----------~~~f~~~~~~~~~r~~~ 191 (1032)
T KOG1178|consen 126 PSWPNSELAGYLMRIAHFLTSVELEIVR--R--LNIIDILLNSLFPKLSVETI----------ADSFQMVLHNEDTREIR 191 (1032)
T ss_pred CCCcccccchHHHhhhhhheeccceehh--h--hhhHHHHhhccccccchhhc----------cchhhhhhccCCCccee
Confidence 9999 3322222 1111111111 0 00000000 00111111000 0111111111 111113
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC-
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT- 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~- 711 (1102)
...++..+++.|||||||.||||..+|..+.+...|+...+..+..+++-.....+++.. +.....+++.++..++.+
T Consensus 192 ~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~-i~~~~~~~L~~~~~l~~p~ 270 (1032)
T KOG1178|consen 192 VGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDT-IQKFIGALLFNGNNLLVPT 270 (1032)
T ss_pred eecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccc-hHHHHhhHhhcCceeeccc
Confidence 455677899999999999999999999999999999999999999998755555656665 566555555555544443
Q ss_pred C---CCHhHHHHHHhhcccccccccHHHHHHHHhccCCc---------------cccccceeeeeccCCCHHHHHHHHHH
Q psy12852 712 K---FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE---------------ADYSHQVVKMIGVGMRGDIWAKFVKR 773 (1102)
Q Consensus 712 ~---~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------------~~~~l~~~~~~Ge~l~~~~~~~~~~~ 773 (1102)
. -.+.++.+.+++++++..+.+|++.+.++...... ....+++..++||+...++...+...
T Consensus 271 ~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~ 350 (1032)
T KOG1178|consen 271 ATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDL 350 (1032)
T ss_pred ccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhc
Confidence 3 23789999999999999999999988876543321 11256777888999999988877776
Q ss_pred hCcchhhhccccccCCcccccCCCCCC-------cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCc
Q psy12852 774 FHVQTIIEFYGATEGNANLVNMDNTEG-------AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPG 846 (1102)
Q Consensus 774 ~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~G 846 (1102)
+...-+..-|++|+.+...+.....+. .+..++......+......... . ...++..++.+
T Consensus 351 ~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~-----------~~~~~~~~v~~ 418 (1032)
T KOG1178|consen 351 LAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-R-----------AGGEGEGGVGK 418 (1032)
T ss_pred ccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-c-----------cCcccCCcccc
Confidence 654344455999998887765433221 1222222111111111111111 1 11223344444
Q ss_pred ceEEEEeecCCcccccccCCchHHHHHHhhccc---CCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHH
Q psy12852 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVF---KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923 (1102)
Q Consensus 847 el~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~---~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE 923 (1102)
+..+..+-.+.. +..||.. .+.|.++.. ...+++|||||+|+..++|.+.|.||.|+|||+||+||+++||+
T Consensus 419 ~~l~~~~~~~~~-~~~g~~~----~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~ 493 (1032)
T KOG1178|consen 419 GCLGAEQNLSSW-VVDGYST----PENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELN 493 (1032)
T ss_pred eeecccccccce-eeccccc----hhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhc
Confidence 444433333332 2233332 333333222 23479999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC--ccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhh
Q psy12852 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN--QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001 (1102)
Q Consensus 924 ~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~--~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~ 1001 (1102)
+++..+|.|.++++.++.+... ++..+++++..+. ......|+.++.+.|+.||+|..++.++++|+|+|||||+++
T Consensus 494 t~v~~~p~v~~~itl~~~~~~~-~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkka 572 (1032)
T KOG1178|consen 494 TVVEVHPDVKEAITLARENSTV-GQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKA 572 (1032)
T ss_pred hhhccCcchhhhheeeeecccc-CceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhh
Confidence 9999999999999999776654 4444444443322 234678999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCcc
Q psy12852 1002 LQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKY 1080 (1102)
Q Consensus 1002 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l 1080 (1102)
|.+.........+.......++...... ......|-...+. ..++.++|||++||||+.|+++...+|+. .+..
T Consensus 573 L~~~~s~~~~~~~s~~~~~~~~~~~~~~----~~v~d~~l~~~~~-~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~ 647 (1032)
T KOG1178|consen 573 LLEYNSKLTNVQDSSLSEAKDSILSLPL----STVFDLWLSIGSL-AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEG 647 (1032)
T ss_pred hhhhhhhhcccccceeeccccccccccc----cchhhhhhhhcCc-cccCCCcchhhhcchhHHHHHHHHhhhhhheecc
Confidence 9984433333333222222221111111 1111122222221 35889999999999999999999999998 5678
Q ss_pred ceEEEEeccccccccC
Q psy12852 1081 FLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1081 ~~~~l~~~pti~~laa 1096 (1102)
.+.-+|+.+||..+++
T Consensus 648 ~~~l~~~l~ti~~~~~ 663 (1032)
T KOG1178|consen 648 PLGLIFKLLTIVNLES 663 (1032)
T ss_pred ccccccchhhHHHHHH
Confidence 9999999999988765
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=396.72 Aligned_cols=319 Identities=20% Similarity=0.205 Sum_probs=251.7
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe--
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR-- 710 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~-- 710 (1102)
...++|+++++|||||||.||||+++|+++.+.+......+ ...++++..+|++|..+ +..++.+++.|+++++.
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g-~~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAG-LQVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHH-HHHHHHHHHcCCeEEecCc
Confidence 34568999999999999999999999999998877655544 35578899999999998 67788999999999873
Q ss_pred -CCCCHhHHHHHHhhcc--cccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 711 -TKFSASNYFRDCAKYK--CNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 711 -~~~~~~~l~~~i~~~~--vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
..+++..+++.+++++ +++...+|+++..++..... ....+++.+++||+++++++.+++.+ ++ .++++.||+|
T Consensus 108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~-~~v~~~YG~T 185 (358)
T PRK07824 108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAA-AG-INVVRTYGMS 185 (358)
T ss_pred CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccccCCcccceEEEECCCCCCHHHHHHHHh-cC-CcEEecccCC
Confidence 3478999999999998 55667788888776654432 33457788899999999999998876 44 5899999999
Q ss_pred cCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 787 EGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 787 E~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
|++..+.. .|.+.+ ...+.+ ..|| +++.|+ .++.||+|
T Consensus 186 E~~~~~~~-------~G~~~~-------g~~v~i-----------------------~~Ge----i~v~g~-~~~~gY~~ 223 (358)
T PRK07824 186 ETSGGCVY-------DGVPLD-------GVRVRV-----------------------EDGR----IALGGP-TLAKGYRN 223 (358)
T ss_pred ccCCCcCc-------CceeCC-------CCEEEe-----------------------cCCE----EEEecC-ccccccCC
Confidence 98754321 122211 111110 1244 446688 58889999
Q ss_pred chHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCC
Q psy12852 867 KKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD 946 (1102)
Q Consensus 867 ~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 946 (1102)
++... .|. .++||+|||+|++ ++|.++++||.||+||++|++|+|.|||++|.++|+|.+|+|++++++. .
T Consensus 224 ~~~~~-~~~------~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~-~ 294 (358)
T PRK07824 224 PVDPD-PFA------EPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDR-L 294 (358)
T ss_pred Ccccc-ccc------CCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCC-C
Confidence 87432 221 2569999999999 8999999999999999999999999999999999999999999866544 3
Q ss_pred CceeEEEEEc-CCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 947 GRAGMIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 947 ~~~~l~~~v~-~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
++..+++++. .+...+.++|+++++++||.|++|..|+++++||+|++||+||++|++.+.
T Consensus 295 g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 356 (358)
T PRK07824 295 GQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFA 356 (358)
T ss_pred ceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhh
Confidence 4444444442 234577899999999999999999999999999999999999999998653
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=398.26 Aligned_cols=453 Identities=13% Similarity=0.045 Sum_probs=309.7
Q ss_pred hhHHHHHHHHhhcccCCcccchhh----c----chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHH
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTV----K----NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 552 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~----~----~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~ 552 (1102)
.++..++.. .++++|+++|+.. + -+|+|+.+++.++|..|.+.|+++||+|+|+++|+++|+++.+||++
T Consensus 427 ~Tl~dll~~--~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~ 504 (1452)
T PTZ00297 427 RSLGEMWER--SVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACAL 504 (1452)
T ss_pred CCHHHHHHH--HHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 344444444 5889999999862 1 23999999999999999999999999999999999999999999999
Q ss_pred cCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCC---C---------CCCCChhHhh
Q psy12852 553 LGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET---K---------PDLPNLSDLM 620 (1102)
Q Consensus 553 aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~ 620 (1102)
+|+++||+++ +.+.+.+++++++++++|++.+....+..+... .-.++++++.. . .....++++.
T Consensus 505 ~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~-~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll 581 (1452)
T PTZ00297 505 YGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSR-KLETVVYTHSFYDEDDHAVARDLNITLIPYEFVE 581 (1452)
T ss_pred cCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhccc-CCcEEEEECCCcccccccccccCCcceeeHHHHH
Confidence 9999999975 357899999999999999998776666554321 12345555421 0 0134466666
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEE---CCCCCCCCceEEeccHHHHHhhhhhhhcc---CCCCCcEEEEecCchhhhhHH
Q psy12852 621 KTTPASEVKPSEPLQTSDSLLYIY---TSGTTGLPKAAIMPNFKVLLGGQVGKHLL---SLGSGDVIYNCLPMYHSAGGL 694 (1102)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~a~ii~---TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~ 694 (1102)
..............+++|++.|+| ||||||.||||++||+|++.++....... ...++|++++++|++|..+ .
T Consensus 582 ~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~e-r 660 (1452)
T PTZ00297 582 QKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFN-R 660 (1452)
T ss_pred hcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHH-H
Confidence 544221111223457889999996 99999999999999999999887765432 4567899999999999998 5
Q ss_pred HHHHhHhhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcc--------------------------
Q psy12852 695 IGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA-------------------------- 748 (1102)
Q Consensus 695 ~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-------------------------- 748 (1102)
...+.++..|+++.. +++..+++.|+++++|+++++|.++..+.+.-....
T Consensus 661 ~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~ 737 (1452)
T PTZ00297 661 VFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHR 737 (1452)
T ss_pred HHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 566778999999874 478999999999999999999999987643210000
Q ss_pred c------------------cccceeeeec--cCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccccCCC
Q psy12852 749 D------------------YSHQVVKMIG--VGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808 (1102)
Q Consensus 749 ~------------------~~l~~~~~~G--e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~ 808 (1102)
. ..+|+.++|| ++++..+.. ..+++.+||.||+.. ..........|.+
T Consensus 738 ~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~glTE~~~--~~~~~~~~~~G~P--- 805 (1452)
T PTZ00297 738 RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPCLREVFF--LPSEGVFCVDGTP--- 805 (1452)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecceEEeee--ecCCCCcccCCee---
Confidence 0 1123333343 233322222 124566899999532 1111111111322
Q ss_pred CCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEE
Q psy12852 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFL 887 (1102)
Q Consensus 809 ~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yr 887 (1102)
..+..+++...++. +. . +..||++. +|.++| .|.+ ++ ++|
T Consensus 806 --lpgvEvKI~~~~E~-~~-------------~-~~~GEIlv------------r~~kdpe~T~e-~~-------~gW-- 846 (1452)
T PTZ00297 806 --APSLQVDLEPFDEP-SD-------------G-AGIGQLVL------------AKKGEPRRTLP-IA-------AQW-- 846 (1452)
T ss_pred --cCceEEEEcccccc-cC-------------C-CCCCeEEE------------EECCChHHHHH-hh-------CcC--
Confidence 21123333222211 10 0 12477663 233555 4544 32 345
Q ss_pred ecceeEEecCccEEEEccCCCeEEe-CceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC-c-----
Q psy12852 888 SGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN-Q----- 960 (1102)
Q Consensus 888 TGDl~~~~~dG~l~~~GR~dd~Iki-~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~-~----- 960 (1102)
++||.|.++||++|.||. +|++|.|+.||+.+.++|.|.+++|+| + ++..++++++++. .
T Consensus 847 -------~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~G--d----~~k~lvALVvpd~e~l~~~w 913 (1452)
T PTZ00297 847 -------KRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYA--D----PSRPIIAIVSPNRDTVEFEW 913 (1452)
T ss_pred -------ccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEe--c----CCCceEEEEEeCHHHHHHHH
Confidence 479999999999999999 999999999999999999999999998 2 2233555553331 0
Q ss_pred ---------------cCHHH--------HHHHH-----HccCCCCCcceEEEEec-Cc-----cCCCCccchhhhhhhcC
Q psy12852 961 ---------------VDLKL--------LVQGL-----DANLPAYARPLFVRIMK-AI-----EMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 961 ---------------~~~~~--------l~~~l-----~~~Lp~~~~P~~i~~l~-~l-----P~t~~GKidr~~L~~~~ 1006 (1102)
.+..+ +++.+ .+.+..+.+++.|.+++ .| -+||+.|+.|+.+.+.+
T Consensus 914 a~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY 993 (1452)
T PTZ00297 914 RQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYF 993 (1452)
T ss_pred HHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHH
Confidence 01122 22222 12367789998877754 45 48999999999987644
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=356.41 Aligned_cols=287 Identities=19% Similarity=0.102 Sum_probs=221.6
Q ss_pred CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCC--CcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCC
Q psy12852 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS--GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFS 714 (1102)
Q Consensus 637 ~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~ 714 (1102)
+..++++|||||||.||||++||+++.+.+.+....++++. .|++++.+|++|.+++.+.++.++..|+++++.++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 45789999999999999999999999998887777777654 4689999999999987788899999999999998888
Q ss_pred HhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc
Q psy12852 715 ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN 794 (1102)
Q Consensus 715 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 794 (1102)
+..+++.++.+ |++.++|++++.|..... ...+++. ++||+++++++++.+.+. +..++++.||+||++.+++.
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~~--~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~ 248 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLDY--RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLR 248 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhCc--CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccc
Confidence 88888888653 889999999999876532 2233443 678999999999999875 43479999999999865432
Q ss_pred CCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHH
Q psy12852 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKI 874 (1102)
Q Consensus 795 ~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f 874 (1102)
.. ++..+.+.++ +.. ..+ .|. + .|+
T Consensus 249 ~~--~~~~~~~~p~-------~~~---~~~--------------------~~~---~---~g~----------------- 273 (386)
T TIGR02372 249 EA--PDDPFRLLPD-------LAC---FAD--------------------TLS---S---AGL----------------- 273 (386)
T ss_pred cC--CCCCcccCCC-------ccc---cCC--------------------Ccc---C---CCc-----------------
Confidence 21 1111111000 000 000 000 0 011
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
..||+|||+|+|+++|+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|.. .++...+++
T Consensus 274 --------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~------~g~~~~a~v 339 (386)
T TIGR02372 274 --------ARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL------DGRRLKAFI 339 (386)
T ss_pred --------cceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc------CCceEEEEE
Confidence 247899999999999999999999999999999999999999999999999998853 234444444
Q ss_pred EcCC-CccC--HHHHHHHHHccCCCCCcceEEEEecCccCCCCccch
Q psy12852 955 VDTS-NQVD--LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998 (1102)
Q Consensus 955 v~~~-~~~~--~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKid 998 (1102)
+..+ ...+ .++++++++++||.|++|..|.++++||+|++||++
T Consensus 340 v~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 340 VVAEDADEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred EECCCCChHHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 4222 1222 468999999999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=322.74 Aligned_cols=323 Identities=14% Similarity=0.055 Sum_probs=227.0
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhh---hhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV---GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
.++++++++|||||||.||+|.++|+++...... ....+++.++|+++...++.+..+.....+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 4567889999999999999999999998765332 2344688999999887766554443445667888999998887
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccccc
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 787 (1102)
..+++.+++.|+++++|++.++|+++..|+...... ...+++.++++||+++++..+.+.+.|+. ++++.||+||
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~-~v~~~YG~tE 231 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGM-KATDIYGLSE 231 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCC-ceEecccchh
Confidence 778899999999999999999999999887643211 12367788899999999999999999975 8999999999
Q ss_pred CCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc
Q psy12852 788 GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867 (1102)
Q Consensus 788 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~ 867 (1102)
++.......+.....|.. .......+.++|+++|.+ +++|++||+++. |.
T Consensus 232 ~~~~~~~~~~~~~~~g~~-----~~~~~~~~eivd~~~g~~-----------v~~Ge~Gelvvt----~~---------- 281 (422)
T TIGR02155 232 VIGPGVAMECVETQDGLH-----IWEDHFYPEIIDPHTGEV-----------LPDGEEGELVFT----TL---------- 281 (422)
T ss_pred hcCCceeecccccCCCce-----EecCeeEEEEECCCCCCC-----------CCCCCeeEEEEe----cC----------
Confidence 852111111111111211 110123344667665644 477888887743 32
Q ss_pred hHHHHHHhhcccCCCCeEEEecceeEEecC-c-----cEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEE
Q psy12852 868 KESQKKILENVFKPGDKYFLSGDMMVMDEL-G-----YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941 (1102)
Q Consensus 868 ~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d-G-----~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~ 941 (1102)
+...| + ..||+|||+|+++++ | .+++.||.||+||++|.+|+|.|||.+|.++|+|.....+.+.
T Consensus 282 --~~~~~-p------~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~ 352 (422)
T TIGR02155 282 --TKEAL-P------VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELT 352 (422)
T ss_pred --Ccccc-c------eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEE
Confidence 11222 1 469999999999886 4 4789999999999999999999999999999999854444433
Q ss_pred cCCCCCceeEEEEEcC-CCc-----c----CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhh
Q psy12852 942 VGDLDGRAGMIAIVDT-SNQ-----V----DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKI 1000 (1102)
Q Consensus 942 ~~~~~~~~~l~~~v~~-~~~-----~----~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~ 1000 (1102)
..+ ..+...+.++.. +.. . ..++|++++++.+..++. -.|+..++||+|+ ||+.|.
T Consensus 353 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 353 RNG-HMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred cCC-CccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 332 122222222222 111 1 146788888888877642 2333346999988 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=263.16 Aligned_cols=256 Identities=17% Similarity=0.105 Sum_probs=183.9
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc---cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR 710 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~ 710 (1102)
...++++.+.|||||||+||+|.+||+++.......... .+++++|+++...++.++.+.....+.++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 345688999999999999999999999998766544433 48899999999999888877444456677888887644
Q ss_pred CCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 711 TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 711 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
.. ....++.|+++++|.+..+|+.+..|...... .....++.+++|||+++++..+.+.+.++. +++|.||+|
T Consensus 163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~-~v~~~YG~T 239 (445)
T TIGR03335 163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGC-EVYNTYGST 239 (445)
T ss_pred Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCC-cEEecCChh
Confidence 32 34568899999999999999987776543211 122467888999999999999999888875 899999999
Q ss_pred cCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc-c-
Q psy12852 787 EGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG-Y- 864 (1102)
Q Consensus 787 E~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g-Y- 864 (1102)
|+++...+ .. ..|.. .......+.++|++++.++ |.|+.||+++. +. ... +
T Consensus 240 E~~~~~~c-~~---~~g~h-----~~~d~~~vEIvDp~~~~~v-----------p~Ge~GELvvT----~L---~~~~~r 292 (445)
T TIGR03335 240 EGTMCGEC-QA---VAGLH-----VPEDLVHLDVYDPRHQRFL-----------PDGECGRIVLT----TL---LKPGER 292 (445)
T ss_pred hhhheEEe-cC---CCCcc-----ccCCceEEEEEcCCCCCCC-----------cCCCceEEEEE----ec---CCCCcc
Confidence 98633222 11 11211 1112345667787766544 88999999854 11 000 0
Q ss_pred CCchHHHHHHhhcccCCCCeEEEecceeEEec-C----cc----EEEEccCCCeEEeCceeechHHHHHHHHhc---CCc
Q psy12852 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDE-L----GY----LYFKDRTGDTYRWKGENVSTMEVEATISKY---LPY 932 (1102)
Q Consensus 865 ~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~-d----G~----l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~---~~V 932 (1102)
...| ++ =|+|||++++.. + |. +...||.||+++++|.+|.|.+||++|.++ +++
T Consensus 293 ~~~P-----li---------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~ 358 (445)
T TIGR03335 293 CGSL-----LI---------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSL 358 (445)
T ss_pred CCce-----EE---------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCC
Confidence 0011 11 299999999742 2 32 555799999999999999999999999995 555
Q ss_pred c
Q psy12852 933 T 933 (1102)
Q Consensus 933 ~ 933 (1102)
.
T Consensus 359 ~ 359 (445)
T TIGR03335 359 T 359 (445)
T ss_pred C
Confidence 4
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=208.00 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=157.5
Q ss_pred hcccCCcccchhhc---------chHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 492 NARSTNDAAATTVK---------NLEAQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~---------~~Y~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
.++++|+++|++.. -+|+||.++++++|+.|++ .|+++||+|+|+++|+++++++++|++++|++++|++
T Consensus 5 ~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n 84 (227)
T TIGR03089 5 LLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG 84 (227)
T ss_pred hhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC
Confidence 37788999999631 2499999999999999998 6999999999999999999999999999999999994
Q ss_pred CCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEe-----cC-----CCCCCCChhHhhccCCCCCCCCC
Q psy12852 562 TNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL-----DE-----TKPDLPNLSDLMKTTPASEVKPS 631 (1102)
Q Consensus 562 ~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~ 631 (1102)
+++++++|++++..+.+.. +.. ++.+ .. ...+...+.+.......... +.
T Consensus 85 -------------~s~a~~~v~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 144 (227)
T TIGR03089 85 -------------DPDADVVVTGPDRLAAAAG-----SGE-VVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFA-PY 144 (227)
T ss_pred -------------CCCCCEEEeCcchhhhccc-----CCc-eEEEeccccccCCCCCCCCcccchhhhhhccCCCCC-CC
Confidence 7899999999877665431 111 2221 11 01122233333332111111 11
Q ss_pred CCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 632 EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 632 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
....++|++.|+||||+ +|+++.... ...+++++|+++ .+|++|..|+...++.+|..|+++++.+
T Consensus 145 ~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~ 210 (227)
T TIGR03089 145 EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVT 210 (227)
T ss_pred CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEec
Confidence 13467899999999986 666665544 567789999999 9999999997788999999999999999
Q ss_pred CCCHhHHHHHHhhcccc
Q psy12852 712 KFSASNYFRDCAKYKCN 728 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt 728 (1102)
+|++..+++.|+++|||
T Consensus 211 rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 211 HPDPARLDQIAETERVT 227 (227)
T ss_pred CCCHHHHHHHHHhhcCC
Confidence 99999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-20 Score=212.89 Aligned_cols=491 Identities=16% Similarity=0.136 Sum_probs=318.7
Q ss_pred hcccCCcccchhhcch---------HHHHHHHHHHHHHHHHHCC-CCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 492 NARSTNDAAATTVKNL---------EAQIDEYSNKIARILQDDG-FKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---------Y~eL~~~a~~lA~~L~~~g-v~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
.++++|+.+|+..-+. |++|..++.++|.+|+.++ +++||.|+++.+++.|++++++||+.+|.+++|+.
T Consensus 779 R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~ 858 (1363)
T KOG3628|consen 779 RAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVP 858 (1363)
T ss_pred HhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccC
Confidence 5899999999875332 9999999999999999884 89999999999999999999999999999999998
Q ss_pred CCC------CchhhhhhhhccCceEEEEcCcchhHHHHHH--hcCCC---ceEEEecCCCCCCCChhHhhcc-CCCCCCC
Q psy12852 562 TNL------KKQPLVHSISTVKSKAIIVSALYYPEIEAIR--ESIPD---VKLFLLDETKPDLPNLSDLMKT-TPASEVK 629 (1102)
Q Consensus 562 ~~~------p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 629 (1102)
|-. ....+..|++..++.+|+++......++.-. ..... ..++..++.... +...... .......
T Consensus 859 p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t---~~k~~~~~~k~~~~~ 935 (1363)
T KOG3628|consen 859 PPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPET---IRKRKKNIKKLNTPT 935 (1363)
T ss_pred CccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchh---hhhhhhhhhccCCCC
Confidence 854 3456788999999999999987554443211 11100 111111111000 0000000 0111112
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
++....++.+||+-|.--++|.=-||.++|.++.+.+........+.+..-++.+.+++...|+....+...++|.+.++
T Consensus 936 ~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~L 1015 (1363)
T KOG3628|consen 936 PPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLL 1015 (1363)
T ss_pred CccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceee
Confidence 22345668899998888899999999999999999999999999999999999999989988988888899999999888
Q ss_pred eCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccc--------cccceeeeeccCCCHHHHHHHHHHhCc-
Q psy12852 710 RTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEAD--------YSHQVVKMIGVGMRGDIWAKFVKRFHV- 776 (1102)
Q Consensus 710 ~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~--------~~l~~~~~~Ge~l~~~~~~~~~~~~~~- 776 (1102)
.++ .++..|+..|++++|.-++.+=+.+............ .+...++..-|.....+.+.|.+.|..
T Consensus 1016 i~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~i 1095 (1363)
T KOG3628|consen 1016 ISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAI 1095 (1363)
T ss_pred cCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHc
Confidence 776 5799999999999999998888888776553222111 112233334556666777777766521
Q ss_pred ----chhhhccccccCCccccc-----------CCCCCCcccccCCCC------------CCcCCCeeeEEeecCCCCCc
Q psy12852 777 ----QTIIEFYGATEGNANLVN-----------MDNTEGAVGIIPTLL------------PTFLHPVAIIQFDLVENQPI 829 (1102)
Q Consensus 777 ----~~l~n~YG~TE~~~~~~~-----------~~~~~~~~g~~~~~~------------~~~~~~~~~~~~d~~~g~~i 829 (1102)
..+--.|+.-=.-.++.. .+.+.-..|+..... ........+.++.+++-
T Consensus 1096 gLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk--- 1172 (1363)
T KOG3628|consen 1096 GLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETK--- 1172 (1363)
T ss_pred CCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccc---
Confidence 122223332222222211 111111111110000 00001223334444432
Q ss_pred CCCCCcccccccCCCCcceEEEEeecCCcccccccCCc--hHHHHHHhh---cccCCCCeEEEecceeEEec------Cc
Q psy12852 830 RDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK--KESQKKILE---NVFKPGDKYFLSGDMMVMDE------LG 898 (1102)
Q Consensus 830 ~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~--~~t~~~f~~---~~~~~g~~~yrTGDl~~~~~------dG 898 (1102)
.+|..|+.||+ ++.+... +.+|.+. +.....|-. .-...+..|-||||+|+... +|
T Consensus 1173 --------~pc~dge~GEI----W~~S~hn-A~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~ 1239 (1363)
T KOG3628|consen 1173 --------GPCRDGELGEI----WVNSAHN-ASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANV 1239 (1363)
T ss_pred --------cccccCCcceE----Eeccccc-cccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccc
Confidence 35566776665 4567743 3345443 233333311 11123578999999999843 23
Q ss_pred ----cEEEEccCCCeEEeCceeechHHHHHHHH-hcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHH-Hc
Q psy12852 899 ----YLYFKDRTGDTYRWKGENVSTMEVEATIS-KYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGL-DA 972 (1102)
Q Consensus 899 ----~l~~~GR~dd~Iki~G~ri~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l-~~ 972 (1102)
-||++|-.++.+-+||.|..|.+||..+. .||.|..|+|+- .+.. +++++....+....+|.-.+ ..
T Consensus 1240 e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~------~~gl-vVvviE~~gq~~~~~LvPlIv~~ 1312 (1363)
T KOG3628|consen 1240 ERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQ------ATGL-VVVVIECHGQQELADLVPLIVNV 1312 (1363)
T ss_pred eeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEe------eCCe-EEEEEEecCchhHhhhhHHHHHH
Confidence 38999999999999999999999998885 689999999984 2222 23333222233333332222 22
Q ss_pred cCCC-CCcceEEEEecC--ccCCCCccchhhhhhhcCCC
Q psy12852 973 NLPA-YARPLFVRIMKA--IEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 973 ~Lp~-~~~P~~i~~l~~--lP~t~~GKidr~~L~~~~~~ 1008 (1102)
.|.. |-+-..+.+++. +|+++.|--.|..+++....
T Consensus 1313 vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1313 VLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred HHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 2333 555666777766 99999999999998876544
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=209.10 Aligned_cols=319 Identities=17% Similarity=0.129 Sum_probs=220.7
Q ss_pred CCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh---ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH---LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 635 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
..++...|--||||||+|+-+.++...+-.....+.. ..+...+|++..+.....+.|.....+++--.|++++-..
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~ 167 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS 167 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence 3345666889999999999999999988776555554 3578899999887776666664555566666777777666
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccccc
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 787 (1102)
.-+.+.-+++++++++|++.++|+.+..|.+.... ....+++..++|+|+++++..+.+.++|+. ..++.||.||
T Consensus 168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~-~~~diYGltE 246 (438)
T COG1541 168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGC-KAFDIYGLTE 246 (438)
T ss_pred CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCC-ceeecccccc
Confidence 66788899999999999999999999888765333 334577888999999999999999999987 7899999999
Q ss_pred CCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCc
Q psy12852 788 GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867 (1102)
Q Consensus 788 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~ 867 (1102)
..+.. ...+.... |. .........-++||++|+++ +.|+.||++.. .+. +
T Consensus 247 ~~g~g-~~eC~~~~-gl-----hi~eD~~~~Ei~dP~t~e~l-----------~dge~GelV~T-------~L~-----~ 296 (438)
T COG1541 247 GFGPG-AGECTERN-GL-----HIWEDHFIFEIVDPETGEQL-----------PDGERGELVIT-------TLT-----K 296 (438)
T ss_pred ccCCc-cccccccc-CC-----CcchhhceeeeecCCcCccC-----------CCCCeeEEEEE-------ecc-----c
Confidence 97663 11221111 21 11214556678899988776 77888998854 111 1
Q ss_pred hHHHHHHhhcccCCCCeEEEecceeEEecC----cc-----EEEEccCCCeEEeCceeechHHHHHHHHhcCCcc-eeEE
Q psy12852 868 KESQKKILENVFKPGDKYFLSGDMMVMDEL----GY-----LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT-EFTV 937 (1102)
Q Consensus 868 ~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d----G~-----l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~-~a~v 937 (1102)
+...++ -|+|||+++..++ |+ ..+.||.||+++++|.+|.|..||.+|.+.+.+. +-.+
T Consensus 297 --~~~PlI---------RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi 365 (438)
T COG1541 297 --EGMPLI---------RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQI 365 (438)
T ss_pred --cCcceE---------EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEE
Confidence 011111 2999999999873 33 5689999999999999999999999999999999 4444
Q ss_pred EEEEcCCCCCceeEEEEEcCCC----ccCHHHHHHHHHccCCC-CCcce--EEEEecCccCCCCccchh
Q psy12852 938 YGVKVGDLDGRAGMIAIVDTSN----QVDLKLLVQGLDANLPA-YARPL--FVRIMKAIEMTGTFKIKK 999 (1102)
Q Consensus 938 v~~~~~~~~~~~~l~~~v~~~~----~~~~~~l~~~l~~~Lp~-~~~P~--~i~~l~~lP~t~~GKidr 999 (1102)
+.. .. ++...+.+-+.... ..+..++.+.+...+-. --+.. .++...++|+|.. |..|
T Consensus 366 ~~~-~~--~~~d~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~~-K~kr 430 (438)
T COG1541 366 ILT-RN--GGLDELTVRVELENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTEG-KAKR 430 (438)
T ss_pred EEe-cC--CCCceEEEEEEecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceecccC-ceeE
Confidence 432 22 23333444442221 12222222343333221 11222 4555678999985 6544
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=201.18 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=102.7
Q ss_pred CCeEEEecceeEE-ecCccEEEEccCCCeEEeCc---eeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcC
Q psy12852 882 GDKYFLSGDMMVM-DELGYLYFKDRTGDTYRWKG---ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDT 957 (1102)
Q Consensus 882 g~~~yrTGDl~~~-~~dG~l~~~GR~dd~Iki~G---~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~ 957 (1102)
.++||+|||+|++ |+||+|+|.||.| +| ++|+|. ||++|.+||+|.+|+|++++++. .|+. +++++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~-~ge~-v~A~Vv~ 278 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPA-KGVG-LYAFVEA 278 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCC-CCeE-EEEEEEE
Confidence 4789999999998 6999999999998 88 799999 99999999999999999987764 3444 4555543
Q ss_pred CCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 958 SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 958 ~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
....+.++|+++|+++||. |+|+.|.++++||+|+||||+|+.|+....
T Consensus 279 ~~~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 279 ELPADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAM 327 (365)
T ss_pred CCCCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhh
Confidence 3456789999999999999 999999999999999999999999998753
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-16 Score=194.34 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=135.1
Q ss_pred CCcccccc---------hhhhhhh-----HHHHHhhhhHHHHhhhcccch-h--HHHHHHh----hhhhhHHHHHHHHHh
Q psy12852 54 PIPKWAHL---------DQDEMND-----CTLVGIVNPSLFFLRLNQFQD-I--RVYIILL----TLPRDVNIIYSLSRA 112 (1102)
Q Consensus 54 ~~~~w~~~---------~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~----~~~~d~~~~~~~~~~ 112 (1102)
|.++|.|. ++|++.+ +.++++.+.+|..+|.||+.. . |...+.. +.......++..-+.
T Consensus 83 ~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (728)
T PLN03052 83 PPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDES 162 (728)
T ss_pred CCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCCC
Confidence 45799777 5688876 777898899999999999773 2 2211111 111111111110011
Q ss_pred hhcccccccCCCCHHHHHHH-HHhcCCCCcEEEECC--------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q psy12852 113 ILGTKRMAATNTTLVSEFKK-SVKRRPNAPCYYFQD--------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCEN 183 (1102)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n 183 (1102)
....+||.+...|+.+++.+ ++..+|+++|+++.+ +.+||+||.++++++|++|++.|+++||+|+++++|
T Consensus 163 ~~~~~wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn 242 (728)
T PLN03052 163 NPGGQWLPGAVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPM 242 (728)
T ss_pred CCCCEECCCCEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence 23357999999999886654 445689999999853 379999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 184 RPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 184 ~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 243 ~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~l 284 (728)
T PLN03052 243 NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAI 284 (728)
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEE
Confidence 999999999999999999999999999999999999999987
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-16 Score=191.11 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=135.2
Q ss_pred CCCcccccc---------hhhhhhhHHHHHhhhhHHHHhhhcccch-h--HHHHHHh----hhhhhHHHHHHHHHhhhcc
Q psy12852 53 LPIPKWAHL---------DQDEMNDCTLVGIVNPSLFFLRLNQFQD-I--RVYIILL----TLPRDVNIIYSLSRAILGT 116 (1102)
Q Consensus 53 ~~~~~w~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~----~~~~d~~~~~~~~~~~~~~ 116 (1102)
-||+||.|+ ++|++.+|.++++.+.+|..+|.||..+ - |...+.. +....-..++. .....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (652)
T TIGR01217 2 RPQPLWQPDAQRIAQARMTRFQAWAGEHHGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDD--RTMPGA 79 (652)
T ss_pred CCCCCCCCChhhcccchHHHHHHHHHHhhCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeC--CCCCCC
Confidence 367899666 5699999999999999999999999773 2 3222111 11111111110 111236
Q ss_pred cccccCCCCHHHHHHHHHhcCCCCcEEEECC-----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q psy12852 117 KRMAATNTTLVSEFKKSVKRRPNAPCYYFQD-----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191 (1102)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~p~~~al~~~~-----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~ 191 (1102)
+||.....|+.+++.++ .++++|+++.+ +.+||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus 80 ~wf~~~~~n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~ 156 (652)
T TIGR01217 80 QWFPGARLNYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAM 156 (652)
T ss_pred EECCCCeeeHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 89999999999988764 46889988732 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 192 LGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 192 la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|||+++|++++|+++.++.+++.+++++++++++
T Consensus 157 lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~l 190 (652)
T TIGR01217 157 LATASVGAIWSSCSPDFGARGVLDRFQQIEPKLL 190 (652)
T ss_pred HHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999999999999988
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=157.30 Aligned_cols=136 Identities=32% Similarity=0.490 Sum_probs=123.1
Q ss_pred hHHHHHHhh--hhhhHHHHHHHHHhhhcccccccCCCCHHHHHHHHHhcCCCCcEEEECC--eeeeHHHHHHHHHHHHHH
Q psy12852 90 IRVYIILLT--LPRDVNIIYSLSRAILGTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQD--ETWTIKQIDEYSNKIARI 165 (1102)
Q Consensus 90 ~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~al~~~~--~~~Ty~el~~~~~~~a~~ 165 (1102)
.+.+....+ .++|+..+..++......++....+.++++.|.++++++|+|+|+++.+ +++||+|+.++++++|+.
T Consensus 41 ~f~~~~~~~~~~~rD~~~~~~~~~v~~~i~~~rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~ 120 (649)
T KOG1179|consen 41 LFGLRALATPYLPRDLWGLLKYILVKIFIRGSRRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANY 120 (649)
T ss_pred hhhHHHHhcccccHHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHH
Confidence 334444434 7888887777777776777777788899999999999999999999976 799999999999999999
Q ss_pred HHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 166 LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 166 L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++|++.||.||++|+|+|||+.+|||++++|++...||++...+.+.|.+..++++.+
T Consensus 121 ~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aral 180 (649)
T KOG1179|consen 121 LHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARAL 180 (649)
T ss_pred HHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEE
Confidence 999999999999999999999999999999999999999999999999999999999988
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=181.32 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=129.7
Q ss_pred hhhhhhhHHHHHhhhhHHHHhhhcccch---hHHHHHHh----hhhhhHHHHHHHHHhhhcccccccCCCCHHHHHHHHH
Q psy12852 62 DQDEMNDCTLVGIVNPSLFFLRLNQFQD---IRVYIILL----TLPRDVNIIYSLSRAILGTKRMAATNTTLVSEFKKSV 134 (1102)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1102)
++|++++|.++++.+.+|..+|.||..+ -|...+.. +.... ..+.+. .....++||.+...|+.+++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~wf~~~~~n~~~~~~~~- 95 (655)
T PRK03584 19 TAFIRWLAARRGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPY-TVVLAG-RRMPGARWFPGARLNYAENLLRH- 95 (655)
T ss_pred HHHHHHHHHHhCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCC-cEeecC-CCCCCCeeCCCCEeeHHHHhhcc-
Confidence 5699999999999999999999998663 23221111 11100 001000 01123689999989999988764
Q ss_pred hcCCCCcEEEECC-----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccch
Q psy12852 135 KRRPNAPCYYFQD-----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWL 209 (1102)
Q Consensus 135 ~~~p~~~al~~~~-----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~ 209 (1102)
.+|+++|+++.+ +.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++.++
T Consensus 96 -~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~ 174 (655)
T PRK03584 96 -RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFG 174 (655)
T ss_pred -CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCC
Confidence 579999999743 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccceee
Q psy12852 210 AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 210 ~~~~~~~l~~~~~~~l 225 (1102)
.+++.+++++++++++
T Consensus 175 ~~~l~~~l~~~~~~~l 190 (655)
T PRK03584 175 VQGVLDRFGQIEPKVL 190 (655)
T ss_pred HHHHHHHHHHcCCcEE
Confidence 9999999999999887
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-13 Score=151.46 Aligned_cols=241 Identities=14% Similarity=0.058 Sum_probs=149.4
Q ss_pred eEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCce-EEEeC-CC
Q psy12852 639 SLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS-IAIRT-KF 713 (1102)
Q Consensus 639 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~-lv~~~-~~ 713 (1102)
-..+..||||||+|-.+.++............ ...++..++++..+..- .+.++. ++..... +...+ ..
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~---~~~ly~---~~~~~~~~~~~~~l~~ 174 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRA---DNNLYQ---SVNNRWISLDFFDLLA 174 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEcc---ChhHHH---HHHhccceeeecCCCc
Confidence 34677899999999999999886644322211 22356677777655211 111222 1222111 22221 14
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhccCCcc-ccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccc
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA-DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 792 (1102)
+.+..++.|++++++++.++|+.+..|........ ...++.++++||.+++...+.+.+.|++ ++++.||+|| +.++
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~~~~k~ii~~~E~l~~~~r~~Ie~~fg~-~V~~~YG~tE-g~la 252 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELTIKPKKVISVAEVLEPQDRELIRNVFKN-TVHQIYQATE-GFLA 252 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCCCCceEEEEccCCCCHHHHHHHHHHhCC-CeeEccCCch-hheE
Confidence 68889999999999999999999998877533222 2456778889999999999999999986 8999999999 5443
Q ss_pred ccCCCCCCcccccCCCCCCcCCCeeeE---EeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchH
Q psy12852 793 VNMDNTEGAVGIIPTLLPTFLHPVAII---QFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE 869 (1102)
Q Consensus 793 ~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~ 869 (1102)
..+. .+..- . +....++ ++|++ +.+ ..++. ++.|..
T Consensus 253 ~eC~--~g~lH-l-------~ed~~~vE~~ivD~~-~~~------------------~~ViT-----------~L~n~~- 291 (430)
T TIGR02304 253 STCR--CGTLH-L-------NEDLVHIEKQYLDEH-KRF------------------VPIIT-----------DFTRTT- 291 (430)
T ss_pred EecC--CCCEE-E-------ccccEEEEeeEECCC-Cce------------------EEEEe-----------cCCCcc-
Confidence 3221 11100 0 0111111 23433 111 11211 222221
Q ss_pred HHHHHhhcccCCCCeEEEecceeEEecC----cc----E-EEEccCCCeEEe---Cc--eeechHHHHHHHH-hcCCcce
Q psy12852 870 SQKKILENVFKPGDKYFLSGDMMVMDEL----GY----L-YFKDRTGDTYRW---KG--ENVSTMEVEATIS-KYLPYTE 934 (1102)
Q Consensus 870 t~~~f~~~~~~~g~~~yrTGDl~~~~~d----G~----l-~~~GR~dd~Iki---~G--~ri~~~eIE~~l~-~~~~V~~ 934 (1102)
..++ =|+|||++++.++ |. | .+.||.||++++ +| ..|.|..++.++. ..++|.+
T Consensus 292 --~PlI---------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~ 360 (430)
T TIGR02304 292 --QPIV---------RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVE 360 (430)
T ss_pred --ceEE---------eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCce
Confidence 1112 2999999998544 33 4 488999999996 44 4459999998854 5788988
Q ss_pred eEEEE
Q psy12852 935 FTVYG 939 (1102)
Q Consensus 935 a~vv~ 939 (1102)
.-++-
T Consensus 361 yQi~Q 365 (430)
T TIGR02304 361 YRVLQ 365 (430)
T ss_pred EEEEE
Confidence 87763
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=169.48 Aligned_cols=147 Identities=10% Similarity=-0.013 Sum_probs=115.7
Q ss_pred hhHHHHhhhcccch---hHHHHHHh---hhhhhHHHHHHHHHhhhcccccccCCCCHHHHHH-HHHhc--CCCCcEEEEC
Q psy12852 76 NPSLFFLRLNQFQD---IRVYIILL---TLPRDVNIIYSLSRAILGTKRMAATNTTLVSEFK-KSVKR--RPNAPCYYFQ 146 (1102)
Q Consensus 76 ~~~~~~l~~~~~~~---~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~p~~~al~~~ 146 (1102)
+.+|..+|.||... -|...+.. +....-..++ .....++||.+...|+...+. +++.. +|+++|+++.
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~---~~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~ 83 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKYVHWDKMYDKVYS---GDEIYPDWFKGGELNTCYNVLDIHVKNPLKRDQDALIYE 83 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCcccccC---CCCCchhhCCCCeeeHHHHHHHHhhcccCCCCceEEEEE
Confidence 46788899998763 23222211 1111111111 011226899999888877655 45443 7899999873
Q ss_pred ------CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccc
Q psy12852 147 ------DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHF 220 (1102)
Q Consensus 147 ------~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~ 220 (1102)
.+.+||+||.++++++|++|++.|+++||+|+++++|++|+++++|||+++|++++|+++.++.+++.++++++
T Consensus 84 ~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~ 163 (647)
T PTZ00237 84 CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETI 163 (647)
T ss_pred cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee
Q psy12852 221 KGIIL 225 (1102)
Q Consensus 221 ~~~~l 225 (1102)
+++++
T Consensus 164 ~~~~l 168 (647)
T PTZ00237 164 TPKLI 168 (647)
T ss_pred CCCEE
Confidence 99988
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-13 Score=153.41 Aligned_cols=108 Identities=22% Similarity=0.373 Sum_probs=96.7
Q ss_pred cccccCCCCHHHH-HHHHHhc-CCCCcEEEECC-----eeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHH
Q psy12852 117 KRMAATNTTLVSE-FKKSVKR-RPNAPCYYFQD-----ETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYV 188 (1102)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~~~-~p~~~al~~~~-----~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~ 188 (1102)
+||.....|+..+ ++++... .+++.|+++.+ +.+||+||.+.++++|++|++ .|+ +||||++++||.||.+
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~ 79 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAV 79 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHH
Confidence 3677777888776 6666653 46899999853 689999999999999999987 568 9999999999999999
Q ss_pred HHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 189 GVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 189 ~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|||+++|+|++|+++.++++++.+++++++++++
T Consensus 80 ~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~v 116 (528)
T COG0365 80 IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVL 116 (528)
T ss_pred HHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEE
Confidence 9999999999999999999999999999999999999
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=157.56 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEC----C-----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQ----D-----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~----~-----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
.|+.+.|.+.++.+|+++|+.+. + +++||+||.++++++|++|++.|+++||+|+++++|++||++++|||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999842 1 35899999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+++||+|+.++.+++.+++++++++++
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~v 155 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIV 155 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEE
Confidence 9999999999999999999999999999988
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=161.86 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=102.2
Q ss_pred cccccccCCCCHHH-HHHHHHhcCCCCcEEEE------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhH
Q psy12852 115 GTKRMAATNTTLVS-EFKKSVKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 187 (1102)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~ 187 (1102)
..+||.+...|+.. .+++++..+|+++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus 42 ~~~wf~~~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~ 121 (628)
T TIGR02316 42 FARWFAGGRTNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEA 121 (628)
T ss_pred cCccCCCCEeeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH
Confidence 36889888888765 56677788999999987 236899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 188 VGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 188 ~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 122 v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 159 (628)
T TIGR02316 122 VFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLI 159 (628)
T ss_pred HHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999999987
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=160.98 Aligned_cols=110 Identities=18% Similarity=0.320 Sum_probs=101.6
Q ss_pred ccccccCCCCHHH-HHHHHHhcCCCCcEEEEC------CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH
Q psy12852 116 TKRMAATNTTLVS-EFKKSVKRRPNAPCYYFQ------DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188 (1102)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~p~~~al~~~------~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~ 188 (1102)
.+||.+...|+.. .++++++.+|+++|+++. .+.+||+||.++++++|++|++.|+++||+|+++++|+++++
T Consensus 44 ~~wf~~~~~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~ 123 (629)
T PRK10524 44 ARWFVGGRTNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAA 123 (629)
T ss_pred CccCCCcEeeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence 5899888888755 466777889999999872 368999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 189 GVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 189 ~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 124 ~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~l 160 (629)
T PRK10524 124 FAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLI 160 (629)
T ss_pred HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999999999999999988
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=160.62 Aligned_cols=111 Identities=19% Similarity=0.306 Sum_probs=101.6
Q ss_pred cccccccCCCCHHHH-HHHHHh-cCCCCcEEEEC------CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh
Q psy12852 115 GTKRMAATNTTLVSE-FKKSVK-RRPNAPCYYFQ------DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE 186 (1102)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~-~~p~~~al~~~------~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e 186 (1102)
.++||.+...|+... +++++. .+|+++|+++. .+.+||+||.++++++|++|++.|+++||+|+++++|++|
T Consensus 78 ~~~wf~g~~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e 157 (666)
T PLN02654 78 SIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLME 157 (666)
T ss_pred cccccCCCEeeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 468999988998665 555665 48999999873 2689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 187 YVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 187 ~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 158 ~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~l 196 (666)
T PLN02654 158 LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVV 196 (666)
T ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEE
Confidence 999999999999999999999999999999999999988
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=161.49 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=101.7
Q ss_pred cccccccCCCCHHHH-HHHHHhcCCCCcEEEECC------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhH
Q psy12852 115 GTKRMAATNTTLVSE-FKKSVKRRPNAPCYYFQD------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 187 (1102)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~ 187 (1102)
.++||.+...|+... ++++++.+|+++|+++.+ +.+||+||.+++.++|++|++.|+++||+|+++++|++++
T Consensus 47 ~~~wf~~~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 126 (625)
T TIGR02188 47 FYKWFVGGELNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEA 126 (625)
T ss_pred CCeeCCCCEEEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 368888888888775 456777899999998743 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 188 VGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 188 ~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 127 ~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~l 164 (625)
T TIGR02188 127 AIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLV 164 (625)
T ss_pred HHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999887
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-12 Score=157.57 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=116.1
Q ss_pred hhhhHHHHhhhcccch-h--HHHHHH--hhhhhhHHHHHHHHHhhhcccccccCCCCHHH-HHHHHHhcCCCCcEEEECC
Q psy12852 74 IVNPSLFFLRLNQFQD-I--RVYIIL--LTLPRDVNIIYSLSRAILGTKRMAATNTTLVS-EFKKSVKRRPNAPCYYFQD 147 (1102)
Q Consensus 74 ~~~~~~~~l~~~~~~~-~--~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~al~~~~ 147 (1102)
+.+..|..+|.|+... - |..... .+....-..++. .....+||.+...|+.. .+.++++.+|+++|+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~w~~~~~~n~~~~~l~~~~~~~p~~~Al~~~~ 90 (637)
T PRK00174 14 IDMEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDTVLDW---NAPFIKWFEDGELNVSYNCLDRHLKTRGDKVAIIWEG 90 (637)
T ss_pred CChHHHHHHHHHHhcCHHHHHHHHHHhcCeecCCcccccC---CCCCCccCCCCEeEHHHHHHHHhhccCCCCeEEEEEC
Confidence 4567888888887652 2 221110 011111000100 22335788777778765 4667788899999999732
Q ss_pred ------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhcccc
Q psy12852 148 ------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFK 221 (1102)
Q Consensus 148 ------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~ 221 (1102)
+.+||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++
T Consensus 91 ~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~ 170 (637)
T PRK00174 91 DDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAG 170 (637)
T ss_pred CCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q psy12852 222 GIIL 225 (1102)
Q Consensus 222 ~~~l 225 (1102)
++++
T Consensus 171 ~~~l 174 (637)
T PRK00174 171 AKLV 174 (637)
T ss_pred CcEE
Confidence 9998
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-12 Score=150.25 Aligned_cols=105 Identities=26% Similarity=0.408 Sum_probs=100.6
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCee--eeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDET--WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~--~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G 198 (1102)
....++.+.+.+.+..+|+++|+++.+.. +||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~G 87 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAG 87 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 44578999999999999999999997766 9999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccccchHHHHhhhhccccceee
Q psy12852 199 VISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++++|+||.++..++.+++++++++++
T Consensus 88 av~vpln~~~~~~~l~~~l~~~~~~~~ 114 (534)
T COG0318 88 AVAVPLNPRLTPRELAYILNDAGAKVL 114 (534)
T ss_pred EEEeecCcccCHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999988
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-12 Score=135.69 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=99.6
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G 198 (1102)
-...|+.+.++..++.-||+.|+++ .+.++||+|+.+.+.++|+.|..+|+++||||++++||+.+|+...+||+++|
T Consensus 47 l~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG 126 (596)
T KOG1177|consen 47 LDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAG 126 (596)
T ss_pred cccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhc
Confidence 3456899999999999999999987 45679999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccccchHHHHhhhhccccceee
Q psy12852 199 VISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
.+.|++||.+..+++++.++.++++++
T Consensus 127 ~v~v~~NP~Yq~~elr~~L~k~~~k~l 153 (596)
T KOG1177|consen 127 LVLVNLNPAYQSEELRYVLKKVGCKAL 153 (596)
T ss_pred eEEeccCcccccHHHHHHHhhcCeEEE
Confidence 999999999999999999999999999
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=154.05 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEC-------C--eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQ-------D--ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~-------~--~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
.|+.+.|.+.++.+|+++|+.+. + +++||+|+.++++++|++|++.|+++||+|+++++|++||++++|||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 58899999999999999999741 1 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++++|+++.++.+++.+++++++++++
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v 153 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIA 153 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEE
Confidence 9999999999999999999999999999988
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=154.93 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC---------------------------CeeeeHHHHHHHHHHHHHHHHHCCCCCCC
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ---------------------------DETWTIKQIDEYSNKIARILQDDGFKKGD 175 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~---------------------------~~~~Ty~el~~~~~~~a~~L~~~G~~~gd 175 (1102)
..|+.+.|.++++.+|+++|+.+. .+++||+||.++++++|++|++.|+++||
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd 147 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS 147 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 358999999999999999999873 47899999999999999999999999999
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 176 VLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 176 ~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++++|++||+++++||+++|++++|+++.++.+++.+++++++++++
T Consensus 148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~l 197 (700)
T PTZ00216 148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAI 197 (700)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEE
Confidence 99999999999999999999999999999999999999999999999988
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=153.06 Aligned_cols=102 Identities=18% Similarity=0.092 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHhcCCCCcEEEE----CC-----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYF----QD-----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~----~~-----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
.++.+.|.+.++.+|+++|+.+ .+ +.+||+||.++++++|++|++.|+++||+|+++++|++||+++++||
T Consensus 44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 123 (651)
T PLN02736 44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123 (651)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 5799999999999999999953 11 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++++|+++.++.+++.+++++++++++
T Consensus 124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l 154 (651)
T PLN02736 124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAI 154 (651)
T ss_pred HHcCCeEEEeecCCCHHHHHHHHhccCCCEE
Confidence 9999999999999999999999999999998
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=153.17 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC------------C-----------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ------------D-----------ETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~------------~-----------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai 179 (1102)
..|+.+.|.+.++.+|+++|+.++ + .++||+|+.++++++|++|.+.|+++||+|++
T Consensus 57 ~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 57 ATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 358999999999999999999532 1 24899999999999999999999999999999
Q ss_pred EcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 180 MCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 180 ~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++||+++++||+++|+++||+|+.++.+++.+++++++++++
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~l 182 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTV 182 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEE
Confidence 9999999999999999999999999999999999999999999988
|
|
| >KOG2039|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-12 Score=155.14 Aligned_cols=138 Identities=27% Similarity=0.363 Sum_probs=112.0
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecC-C
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPL-E 329 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~-~ 329 (1102)
.....|+.|+++|+.|+.||||.|+.+.+.+.++|+|+||||+|.+|.++|+++ |+.|..+|++|++|.|+||++. .
T Consensus 694 ~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~~~~~V~yiDygn~E~lp~~~l~~l--p~~~~~~p~~a~~~~L~~ik~~~~ 771 (875)
T KOG2039|consen 694 YTPKRGDLCVAKYSLDGQWYRALIVEVLDPESMEVFYIDYGNIETLPFVRLKPL--PPHFSLLPPVAQECGLAGIKEPQL 771 (875)
T ss_pred CCCCCCCeeeeeeccccceeeeeeeeeccCcceeEEEEecCcccccccccccCC--ChHHhcCchHHhhhhhhcccCCcc
Confidence 445889999999999999999999998764678999999999999999999999 9999999999999999999988 4
Q ss_pred CCCCHHHHHHHHHHHhhhceEEEEE-EEeeecCceeEEEEEEcCCCcccHHHHHHH-cCcceeeccc
Q psy12852 330 GVWSQAAYDFLDDFTRLFARVVSVK-LHGEETGGRRYAVELFDLDEELNINKELVA-LDLAKFSEDA 394 (1102)
Q Consensus 330 ~~Ws~ea~~~f~~l~~~~~~~~~v~-~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~-~gla~~~~~~ 394 (1102)
+...++++.+|.+.+.. +.+++. ......+ .+.+.++...+..++++.|+. .|+.......
T Consensus 772 ~~~~e~~i~~l~~~~~~--~~~~~~~~~~i~~~--~~~~~l~~~~~~~d~~~~l~~~~~l~~~~~~~ 834 (875)
T KOG2039|consen 772 EDLKEEAIRYLDEDTLG--HKCQVNVELRVVGN--SLLVTLLYTVEELDVGEELVAVEGLSLVEQRK 834 (875)
T ss_pred cchHHHHHHHHHHHhhc--ccceeeeeeeeecc--ceeEEEeeecCcCChhHhhhhhcccccccccc
Confidence 68899999999988443 334444 2222233 355666665568899999999 7777665444
|
|
| >PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-12 Score=123.79 Aligned_cols=94 Identities=27% Similarity=0.478 Sum_probs=70.0
Q ss_pred hhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcc
Q psy12852 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRP 307 (1102)
Q Consensus 228 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~ 307 (1102)
..+.++.+++...+..... .......+|..|++.+..++.||||+|.....++.++|+|||||+++.|+.++||+| |
T Consensus 28 ~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~~~~~~~~V~~iD~G~~~~v~~~~l~~l--~ 104 (121)
T PF00567_consen 28 KAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVDIDENQYKVFLIDYGNTEKVSASDLRPL--P 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEEECTTEEEEEETTTTEEEEEEGGGEEE----
T ss_pred HHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEecccceeEEEEEecCceEEEcHHHhhhh--C
Confidence 3344445555444433322 223344789999999999999999999555567789999999999999999999999 8
Q ss_pred ccccCCCcceEEEEeec
Q psy12852 308 QLISNLPFQAIECYLAG 324 (1102)
Q Consensus 308 ~~l~~lP~qA~~c~L~~ 324 (1102)
..|..+|+||++|+|+|
T Consensus 105 ~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 105 PEFASLPPQAIKCKLAG 121 (121)
T ss_dssp HHHCSSSSSCEEEEET-
T ss_pred HHHhhCChhhEEEEEcC
Confidence 99999999999999987
|
Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A .... |
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=150.74 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC----C-----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHH
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ----D-----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~----~-----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la 193 (1102)
..|+.+.|.+.++++|+++|+.+. + +++||+|+.++++++|++|++.|+++||+|+|+++|++||++++||
T Consensus 41 ~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA 120 (660)
T PLN02430 41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120 (660)
T ss_pred CCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458999999999999999999752 1 3579999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 194 AAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 194 ~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++|++++|+++.++++++.+++++++++++
T Consensus 121 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v 152 (660)
T PLN02430 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV 152 (660)
T ss_pred HHHcCCeEEEeccCCCHHHHHHHHhccCCCEE
Confidence 99999999999999999999999999999998
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=148.24 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=99.1
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
++.+.|.+.++.+|+++|+++.++.+||+||.++++++|+.|++.|+++||+|+++++|+++|++++|||+++|++++|+
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++.++.+++.+++++++++++
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~i 150 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKAL 150 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEE
Confidence 999999999999999999988
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=141.10 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=98.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEE----CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYF----QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~----~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
....++...+.+++..+|+.+|+.. ..+.+||+|+.+++.++|++|++.|+++||+|+|++.|+++|+++.+|++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~ 92 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILA 92 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3446788899999999999888885 347899999999999999999999998899999999999999999999999
Q ss_pred cCCEEeeccccchHHHHhhhhccccceee
Q psy12852 197 LGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 197 ~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++.||++++.+++++.+++++++++++
T Consensus 93 ~g~v~Vp~y~t~~~~~~~~iL~~se~~~i 121 (613)
T COG1022 93 LGAVSVPIYSTSTPEQLAYILNESESKVI 121 (613)
T ss_pred cCCeEEecCCCCCHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999999
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=150.53 Aligned_cols=103 Identities=20% Similarity=0.189 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.+.+.++|+++|+++.++.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~v 85 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVA 85 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEE
Confidence 35789999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+|+.++.+++.+++++++++++
T Consensus 86 pl~~~~~~~~l~~~l~~~~~~~i 108 (563)
T PLN02860 86 PLNYRWSFEEAKSAMLLVRPVML 108 (563)
T ss_pred eCCcccCHHHHHHHHHhcCceEE
Confidence 99999999999999999999988
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-11 Score=146.86 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCe----------eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHH
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDE----------TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 192 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~----------~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~l 192 (1102)
..|+.+.+.+.++++|+++|+++.+. .+||+||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l 84 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF 84 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence 45788999999999999999988543 79999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 193 GAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 193 a~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
||+++|++++|++|.++.+++.++++++.++++
T Consensus 85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 117 (552)
T PRK09274 85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAF 117 (552)
T ss_pred HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999987
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=148.87 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.+.+.++.+|+++|+++.+..+||+||.++++++|++|.+.|+++||+|+++++|+++|++++|||+++|++++|
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vp 93 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNP 93 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEee
Confidence 57888999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+.++.+++.++++.++++++
T Consensus 94 l~~~~~~~~l~~~l~~~~~~~i 115 (579)
T PLN03102 94 INTRLDATSIAAILRHAKPKIL 115 (579)
T ss_pred ccccCCHHHHHHHHhccCCeEE
Confidence 9999999999999999999988
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=128.95 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=100.8
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
|...++.+.+.++|.++||++|++++++.+||+||.+++.++|..|+.+|+++||+|.+-+||..||.+++||++++|++
T Consensus 25 W~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~ 104 (542)
T COG1021 25 WQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVA 104 (542)
T ss_pred ccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
.|..-|.....+|.+...+..++.+
T Consensus 105 PVlALpsHr~~Ei~~f~~~~e~~~~ 129 (542)
T COG1021 105 PVLALPSHRASELGAFASQIEAALL 129 (542)
T ss_pred hhhccchhhHHHHHHHHHhhcchhe
Confidence 9999999999999999999988776
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=143.99 Aligned_cols=106 Identities=29% Similarity=0.465 Sum_probs=101.9
Q ss_pred ccCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 120 AATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
.....++.+.+++.++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++|++|+++++|+++|++++||++++|+
T Consensus 17 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~ 96 (542)
T PRK06155 17 PPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGA 96 (542)
T ss_pred CccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+++.++.+++.+++++++++++
T Consensus 97 ~~vpl~~~~~~~~l~~~l~~~~~~~l 122 (542)
T PRK06155 97 IAVPINTALRGPQLEHILRNSGARLL 122 (542)
T ss_pred EEEEeccccCHHHHHHHHHhcCceEE
Confidence 99999999999999999999999998
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=146.06 Aligned_cols=106 Identities=31% Similarity=0.556 Sum_probs=102.0
Q ss_pred ccCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 120 AATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
.....++.+.|.+.++++|+++|+++.++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 33 ~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~ 112 (600)
T PRK08279 33 PDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA 112 (600)
T ss_pred CCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+++.++.+++.++++.++++++
T Consensus 113 ~~v~l~~~~~~~~l~~~l~~~~~~~l 138 (600)
T PRK08279 113 VVALLNTQQRGAVLAHSLNLVDAKHL 138 (600)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999998
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=142.15 Aligned_cols=97 Identities=24% Similarity=0.297 Sum_probs=93.3
Q ss_pred HHHHHhcCCCCcEEEE-CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccc
Q psy12852 130 FKKSVKRRPNAPCYYF-QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVW 208 (1102)
Q Consensus 130 ~~~~~~~~p~~~al~~-~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~ 208 (1102)
|+++|+++||++|+++ .++++||+||.+++.++|..|++.|+++||+|+++++|+++++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6789999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhccccceeee
Q psy12852 209 LAQLLGKKMVHFKGIILE 226 (1102)
Q Consensus 209 ~~~~~~~~l~~~~~~~l~ 226 (1102)
+.+++.++++.++++++-
T Consensus 81 ~~~~~~~~l~~~~~~~ii 98 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVII 98 (417)
T ss_dssp SHHHHHHHHHHHTESEEE
T ss_pred ccccccccccccceeEEE
Confidence 999999999999999885
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-11 Score=143.73 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.|+.+.|++.++.+|+++|+++.++.+||+||.++++++|++|.+ .|+++||+|+++++|+++|++++||++++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 479999999999999999999988999999999999999999997 5999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++|.++.+++.++++++.++++
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~i 126 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKAL 126 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEE
Confidence 99999999999999999999998
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=149.20 Aligned_cols=103 Identities=13% Similarity=0.042 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--C---eeeeHHHHHHHHHHHHHHHHHC---CCCCC-----------CEEEEEcCC
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--D---ETWTIKQIDEYSNKIARILQDD---GFKKG-----------DVLALMCEN 183 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~---~~~Ty~el~~~~~~~a~~L~~~---G~~~g-----------d~Vai~~~n 183 (1102)
..|+.+.|.+.++.+|+++|+++. + +++||+|+.+++.++|++|.+. |+++| |+|+++++|
T Consensus 60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 458999999999999999999862 2 6899999999999999999974 99999 999999999
Q ss_pred ChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 184 RPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 184 ~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++||+++++||+++|++.||+++.++.+++.+++++++++++
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~l 181 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWL 181 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEE
Confidence 999999999999999999999999999999999999999999
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=143.02 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=98.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G 198 (1102)
....++.+.+.+.++.+|+++|+++. ++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 11 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G 90 (540)
T PRK05857 11 QLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLG 90 (540)
T ss_pred cCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 33458999999999999999999853 3579999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccccchHHHHhhhhccccceee
Q psy12852 199 VISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++++|+++.++.+++.++++.++++++
T Consensus 91 ~v~v~l~~~~~~~~l~~~~~~~~~~~i 117 (540)
T PRK05857 91 AIAVMADGNLPIAAIERFCQITDPAAA 117 (540)
T ss_pred eEEEecCccCCHHHHHHHHHhcCCceE
Confidence 999999999999999999999999887
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=143.02 Aligned_cols=109 Identities=22% Similarity=0.375 Sum_probs=103.8
Q ss_pred cccccCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 117 KRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
.++.....++.+.+.++++.+|+++|+.+.++.+||+||.+++.++|++|.+.|+++|++|+++++|+++|+++++|+++
T Consensus 26 ~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 105 (567)
T PRK06178 26 PEYPHGERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILK 105 (567)
T ss_pred CCCCcCcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHH
Confidence 34555667899999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccccchHHHHhhhhccccceee
Q psy12852 197 LGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 197 ~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++++|++|.++.+++.+++++++++++
T Consensus 106 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~i 134 (567)
T PRK06178 106 LGAVHVPVSPLFREHELSYELNDAGAEVL 134 (567)
T ss_pred hCeEEeecCCCCCHHHHHHHHHhcCCcEE
Confidence 99999999999999999999999999998
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.2e-11 Score=145.74 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=98.7
Q ss_pred cccCCCCHHHHHHHHHhcCCCCcEEEE--------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHH
Q psy12852 119 MAATNTTLVSEFKKSVKRRPNAPCYYF--------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190 (1102)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~p~~~al~~--------~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~ 190 (1102)
......|+++.|.+.++.+|+++|+.+ ..+++||+||.+++.++|++|++.|+++||+|+++++|+++++++
T Consensus 20 ~~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~ 99 (632)
T PRK07529 20 ARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFA 99 (632)
T ss_pred hhcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 334567899999999999999999986 246899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 191 WLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 191 ~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|||+++| +++|+|+.++++++.+++++++++++
T Consensus 100 ~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~l 133 (632)
T PRK07529 100 LWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVL 133 (632)
T ss_pred HHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEE
Confidence 99999999 56899999999999999999999988
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=139.34 Aligned_cols=102 Identities=24% Similarity=0.223 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.|.+++..+|+++|+.+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||++++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.+++++++++.+
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~v 103 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCL 103 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEE
Confidence 9999999999999999999877
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=133.27 Aligned_cols=476 Identities=11% Similarity=0.070 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHH-HHHHCCCCCCCEEEEEcCCc--hhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEc
Q psy12852 508 EAQIDEYSNKIAR-ILQDDGFKKGDVLALMCENR--PEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVS 584 (1102)
Q Consensus 508 Y~eL~~~a~~lA~-~L~~~gv~~g~~V~i~~~~~--~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~ 584 (1102)
|..+..++.+.|+ .|.+.|..++++|.++...+ .++++++++|..+|.+.+|+.+..+.+.+..+++....+++++.
T Consensus 127 wdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t 206 (1363)
T KOG3628|consen 127 WDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTT 206 (1363)
T ss_pred HHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeeh
Confidence 8999999999999 78888999999999998876 79999999999999999999999999999999999999999997
Q ss_pred CcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHH
Q psy12852 585 ALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL 664 (1102)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~ 664 (1102)
......+..........+.+.... ...+. .... -.....+..... ..||-||++++|.--||+++|+ +.+
T Consensus 207 ~a~~r~~~~~~~~~s~~k~v~~w~----t~~~k---~~~~-~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~ 276 (1363)
T KOG3628|consen 207 EAGERAFINDNSPVSLAKAVAWWK----TNDFK---GNYT-KDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLP 276 (1363)
T ss_pred hhhHHHhhhccCcccHHHHHHhhh----ccccc---ceee-hhhccCCceeee-eEEEEEeccchhceeeeEeecc-ccc
Confidence 665444333221110000000000 00000 0000 000111222222 7899999999999999999998 443
Q ss_pred hhhhhh--------------------hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHH
Q psy12852 665 GGQVGK--------------------HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRD 721 (1102)
Q Consensus 665 ~~~~~~--------------------~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~ 721 (1102)
..+.+. ..+++...+.++......-..|+++.++.+|++|.|.+-+++ ..|..+..+
T Consensus 277 q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l 356 (1363)
T KOG3628|consen 277 QMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANL 356 (1363)
T ss_pred chhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhh
Confidence 322211 123445566777766667777889999999999999999987 678889999
Q ss_pred HhhcccccccccHHHHHHHH----hccCC---------ccccccceeeeeccCCCHHHH----HHHHHHhCcchhhhccc
Q psy12852 722 CAKYKCNAGIYIGEMCRYLL----ASKES---------EADYSHQVVKMIGVGMRGDIW----AKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~----~~~~~---------~~~~~l~~~~~~Ge~l~~~~~----~~~~~~~~~~~l~n~YG 784 (1102)
+.+++.+++..=-..+.... +.+.. ....+++..++--+.+..+.- ++|.+-.+....--.|-
T Consensus 357 ~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~ 436 (1363)
T KOG3628|consen 357 ITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDF 436 (1363)
T ss_pred hccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeec
Confidence 99999988754322222211 11110 112233444444556655433 34444222211122222
Q ss_pred c-----------------ccCCcccccCCCCC--CcccccCCCCCCcCCCeeeEEeecCCCCCcCCC-------------
Q psy12852 785 A-----------------TEGNANLVNMDNTE--GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP------------- 832 (1102)
Q Consensus 785 ~-----------------TE~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~------------- 832 (1102)
+ +|.+...-..+... ...|....... ......+.++.+....-...
T Consensus 437 p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~--~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~ 514 (1363)
T KOG3628|consen 437 PILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKE--ALKLNEVEVDTEDDISSLSVKDVLCIMPGDATL 514 (1363)
T ss_pred hhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeecc--ccccceEEEcchhhhhhcCccccceecccceEE
Confidence 2 33332222111100 00000000000 00111122221111000000
Q ss_pred ---CCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcc------cCCCCeEEEecceeEEecCccEEE
Q psy12852 833 ---KTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENV------FKPGDKYFLSGDMMVMDELGYLYF 902 (1102)
Q Consensus 833 ---~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~------~~~g~~~yrTGDl~~~~~dG~l~~ 902 (1102)
.++.-+.|..++.||++ +..++ ...+|+.-+ .|..-|-..+ +.....+.|||=+|+..+ |.++|
T Consensus 515 ~vv~~~t~~LC~~~eVGEIw----VsS~~-~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~-gki~v 588 (1363)
T KOG3628|consen 515 AVVNPDTNQLCKTDEVGEIW----VSSNS-LGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN-GKIYV 588 (1363)
T ss_pred EEeCCCcccccccCcceeEE----EecCC-cccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC-CeEEE
Confidence 01223456666666654 55664 556777654 3333332111 122357999999999977 56666
Q ss_pred EccCCCeE-EeCceeechHHH----------HHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHH--HHHHH
Q psy12852 903 KDRTGDTY-RWKGENVSTMEV----------EATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLK--LLVQG 969 (1102)
Q Consensus 903 ~GR~dd~I-ki~G~ri~~~eI----------E~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~--~l~~~ 969 (1102)
+|=++|++ -+.|.+....+| +.+++..+.|-++.++- .+..++++...+.....+ +-+..
T Consensus 589 l~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~-------~E~~~Vv~~esP~a~e~~~~q~~~~ 661 (1363)
T KOG3628|consen 589 LGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE-------DEHIVVVVLESPDATEENSFQWMSR 661 (1363)
T ss_pred EEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee-------cceEEEEEEeCcchhhhhhhhHHHH
Confidence 66555544 458888877654 34445556677777762 223333333222211111 11112
Q ss_pred HHccCC-CCCcce---EEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 970 LDANLP-AYARPL---FVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 970 l~~~Lp-~~~~P~---~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+-+.+- -+.+-- .+++-..+|+|+-|-|.-..+++....
T Consensus 662 v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 662 VFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred HHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence 211111 122211 355567799999888988888776544
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-11 Score=143.97 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.|.+.++.+|+++|+++.++.+||+||.++++++|++|.+.|+++|++|+++++|+++|++++||++++|++++|
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 122 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILL 122 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEe
Confidence 57999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.+++++++++++
T Consensus 123 l~~~~~~~~l~~~l~~~~~~~v 144 (537)
T PRK13382 123 LNTSFAGPALAEVVTREGVDTV 144 (537)
T ss_pred cCcccCHHHHHHHHHhcCCCEE
Confidence 9999999999999999999988
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=140.34 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECC-----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhc
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQD-----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~-----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~ 197 (1102)
..++.+.|++.++++|+++|+++.+ +.+||+||.++++++|+.|.+.|+++||+|+++++|+++|+++++|++++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 3579999999999999999998754 68999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeccccchHHHHhhhhccccceee
Q psy12852 198 GVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 198 G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++++|+++.++.+++.++++++.++++
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l 113 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLL 113 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999988
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=145.69 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHhc--CCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 124 TTLVSEFKKSVKR--RPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 124 ~~~~~~~~~~~~~--~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
.|+.+.+.+.+.. +|+++|++.. +.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||+++|+++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~ 82 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA 82 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 3788999888876 7999999874 479999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++|.++.+++.++++++.++++
T Consensus 83 vpi~p~~~~~~l~~~l~~~~~~~v 106 (705)
T PRK06060 83 FLANPELHRDDHALAARNTEPALV 106 (705)
T ss_pred EecCCCCCHHHHHHHHhcCCCcEE
Confidence 999999999999999999999988
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-11 Score=143.66 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=100.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
+...++.+.|.+.++.+|+++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|+++|++++||+
T Consensus 21 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~ 100 (547)
T PRK13295 21 WHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC 100 (547)
T ss_pred CcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 345689999999999999999999865 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++++|+++.++.+++.+++++++++++
T Consensus 101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 131 (547)
T PRK13295 101 SRIGAVLNPLMPIFRERELSFMLKHAESKVL 131 (547)
T ss_pred HhcCcEEeccccccCHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999999988
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=140.16 Aligned_cols=103 Identities=21% Similarity=0.370 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..|+.+.+.+.+..+|+++|+++. ++.+||+||.++++++|+.|.+.|+++||+|+++++|+++|+++++|++++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 458999999999999999999874 478999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++..+++.++++++
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~l 126 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLI 126 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999988
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-11 Score=102.16 Aligned_cols=70 Identities=26% Similarity=0.294 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcc--eEEEEecC-ccCCCCcc
Q psy12852 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARP--LFVRIMKA-IEMTGTFK 996 (1102)
Q Consensus 921 eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P--~~i~~l~~-lP~t~~GK 996 (1102)
|||++|.+||+|.+|+|++++++. .| ..+++|+.. +.++|+++++++||+||+| ..|+.+++ ||+|+|||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~-~g-~~l~a~vv~----~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDED-WG-ERLVAFVVL----DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETT-TE-EEEEEEEEE----HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEccc-cc-ccceeEEEe----eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 899999999999999999987654 34 455566544 5599999999999999999 67777788 99999999
|
... |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=139.59 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=101.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....++.+.|.+.++.+|+++|+.+.++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~ 82 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 34568999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.++++.+.++++
T Consensus 83 ~v~~~~~~~~~~~~~~i~~~~~~~i 107 (521)
T PRK06187 83 LHPINIRLKPEEIAYILNDAEDRVV 107 (521)
T ss_pred EEecccCCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999988
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=133.95 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=99.8
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC--------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD--------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 192 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~l 192 (1102)
....|+++.|.+.+..+|+.+++.++. +++||+|+.+++.+++.+|+.+|+++++.|+|++.|+|||+++.+
T Consensus 72 ~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~ 151 (691)
T KOG1256|consen 72 DGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEM 151 (691)
T ss_pred CCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHH
Confidence 455799999999999999999998743 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 193 GAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 193 a~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
||...|++.||++.+++++++.++++++...++
T Consensus 152 a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv 184 (691)
T KOG1256|consen 152 ACYAYSLVNVPLYDTLGAEAVHYIINHAEISIV 184 (691)
T ss_pred HHHhcCCEEeecccCCCHHHHHHHHHhcceeEE
Confidence 999999999999999999999999999999988
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=140.69 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=101.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
.+..++.+.|.+.+..+|+++|+++.++.+||+||.+++.++|+.|.+. |+++||+|+++++|++++++++|||+++|+
T Consensus 7 ~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 86 (546)
T PRK08314 7 LPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANA 86 (546)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCc
Confidence 3456899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+++.++.+++.+++++++++++
T Consensus 87 ~~v~l~~~~~~~~l~~~l~~~~~~~i 112 (546)
T PRK08314 87 VVVPVNPMNREEELAHYVTDSGARVA 112 (546)
T ss_pred EEeecCcCcCHHHHHHHHHhCCCeEE
Confidence 99999999999999999999999988
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-11 Score=145.34 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC-----CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhc
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ-----DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~-----~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~ 197 (1102)
..++.+.|.++++.+|+++|+++. .+.+||+||.++++++|++|.+.|+++||+|+++++|+++|++++||++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 458999999999999999999874 268999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeccccch-----HHHHhhhhccccceeee
Q psy12852 198 GVISKLSNVVWL-----AQLLGKKMVHFKGIILE 226 (1102)
Q Consensus 198 G~v~~~~~~~~~-----~~~~~~~l~~~~~~~l~ 226 (1102)
|++++|+|+.++ .+++.+++++++++++-
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li 151 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVF 151 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEE
Confidence 999999999998 79999999999999883
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=140.56 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECC-eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQD-ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~-~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
...++.+.|.+.++++|+++|+.+.+ +.+||+||.++++++|++|.+ .+||+|+++++|+++|++++|||+++|++
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v 93 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKI 93 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence 34689999999999999999998765 689999999999999999987 38999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+|+.++.+++.+++++++++++
T Consensus 94 ~vpl~~~~~~~~l~~~l~~~~~~~i 118 (539)
T PRK06334 94 PVMINWSQGLREVTACANLVGVTHV 118 (539)
T ss_pred eEecCcccchHHHHHHHHHcCCCEE
Confidence 9999999999999999999999988
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=137.93 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=97.6
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.+.+.+.++++.+|+++|+++.++.+||+||.++++++|++|++ .|+++|++|+++++|+++|+++++|++++|++++|
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.++++.++++++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i 104 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVL 104 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEE
Confidence 9999999999999999999988
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=139.87 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGF-KKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~-~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.++.+.+.+++ .|+++|+++.+..+||+||.+++.++|++|.+.|+ ++||+|+++++|+++|+++++|++++|++++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v 80 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV 80 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence 46777776654 69999999988999999999999999999999999 7999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++|.++.+++.+++++++++++
T Consensus 81 ~l~p~~~~~~l~~~l~~~~~~~~ 103 (540)
T PRK13388 81 GLNTTRRGAALAADIRRADCQLL 103 (540)
T ss_pred EecccCChHHHHHHHHhcCCCEE
Confidence 99999999999999999999988
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=138.68 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.|.+.+..+|+++|+.+.++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 5 ~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~ 84 (513)
T PRK07656 5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVP 84 (513)
T ss_pred ccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.++++.++++++
T Consensus 85 l~~~~~~~~~~~~l~~~~~~~i 106 (513)
T PRK07656 85 LNTRYTADEAAYILARGDAKAL 106 (513)
T ss_pred cCcccCHHHHHHHHhhcCceEE
Confidence 9999999999999999999998
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=139.16 Aligned_cols=105 Identities=23% Similarity=0.309 Sum_probs=101.4
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....|+.+.+.+.+..+|+++|+.+.++.+||.||.++++++|.+|.+.|+++|++|+++++|+++|+++++||+++|++
T Consensus 14 ~~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~ 93 (542)
T PRK07786 14 ARRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAI 93 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 94 ~vpl~~~~~~~~~~~~l~~~~~~~i 118 (542)
T PRK07786 94 AVPVNFRLTPPEIAFLVSDCGAHVV 118 (542)
T ss_pred EEEcCccCCHHHHHHHHHhCCCcEE
Confidence 9999999999999999999999988
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-11 Score=145.03 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECC------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHH
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQD------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~ 195 (1102)
...++.+.|.++++.+|+++|+++.+ +.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+
T Consensus 47 ~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 126 (624)
T PRK12582 47 YPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM 126 (624)
T ss_pred cccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 34689999999999999999998743 689999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccccchH-----HHHhhhhccccceee
Q psy12852 196 KLGVISKLSNVVWLA-----QLLGKKMVHFKGIIL 225 (1102)
Q Consensus 196 ~~G~v~~~~~~~~~~-----~~~~~~l~~~~~~~l 225 (1102)
++|++++|++|.++. +++.+++++++++++
T Consensus 127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~v 161 (624)
T PRK12582 127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVV 161 (624)
T ss_pred HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEE
Confidence 999999999999985 999999999999988
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=139.17 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.|.+.++.+|+++|+++.++.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++||++++|++++|
T Consensus 23 ~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 102 (557)
T PRK07059 23 PSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVN 102 (557)
T ss_pred CCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEec
Confidence 57999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|.++.+++.++++.+.++++
T Consensus 103 v~~~~~~~~~~~~~~~~~~~~v 124 (557)
T PRK07059 103 VNPLYTPRELEHQLKDSGAEAI 124 (557)
T ss_pred cCcccCHHHHHHHHHccCceEE
Confidence 9999999999999999999988
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=140.08 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..|+.+.+.+.+..+|+++|+.+. ++.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++|++++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 367999999999999999999873 578999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~ 131 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLI 131 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999988
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=137.70 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...|+.+.+.+.++++|+++|+++.++.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~ 84 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVW 84 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEE
Confidence 34689999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++.++.+++.++++.+.++.+
T Consensus 85 v~l~~~~~~~~~~~~~~~~~~~~~ 108 (528)
T PRK07470 85 VPTNFRQTPDEVAYLAEASGARAM 108 (528)
T ss_pred EecCccCCHHHHHHHHHhcCceEE
Confidence 999999999999999999999988
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=139.97 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.+.+.+..+|+++|+.+.++.+||+|+.++++++|+.|++.|+++||+|+++++|++++++++||++++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 45789999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++.++.+++.+++++++++++
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~i 136 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTV 136 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEE
Confidence 999999999999999999999988
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=142.40 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.+.+.++.+|+++|+.+.++.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++|++++|++++|
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~ 111 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVE 111 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence 47999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|.++.+++.+++.++.++++
T Consensus 112 l~~~~~~~~l~~~l~~~~~~~i 133 (573)
T PRK05605 112 HNPLYTAHELEHPFEDHGARVA 133 (573)
T ss_pred cCcCCCHHHHHHHHhccCCcEE
Confidence 9999999999999999999987
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-10 Score=140.97 Aligned_cols=104 Identities=16% Similarity=0.275 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECC-eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQD-ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~-~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
...++.+.+.+.++.+|+++|+++.+ +.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 21 ~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 100 (547)
T PRK06087 21 GDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAV 100 (547)
T ss_pred CCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 44689999999999999999999865 79999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.++++.+.++++
T Consensus 101 ~v~l~~~~~~~~l~~~l~~~~~~~l 125 (547)
T PRK06087 101 SVPLLPSWREAELVWVLNKCQAKMF 125 (547)
T ss_pred EeccchhcCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999887
|
|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-11 Score=92.03 Aligned_cols=48 Identities=33% Similarity=0.657 Sum_probs=44.7
Q ss_pred CceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCccc
Q psy12852 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVP 303 (1102)
Q Consensus 256 G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~ 303 (1102)
|+.|+++|++|+.||||+|+++..++.+.|+|+||||.+.|+.++||+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 688999999999999999999987778999999999999999998875
|
For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-10 Score=136.49 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
..++.+.+.+.+. ++++|+++.++.+||+||.+++.++|++|++. |+++|++|+++++|+++|+++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3468888877774 78999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+|+.++.+++.+++++++++++
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~l 105 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLV 105 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEE
Confidence 999999999999999999999998
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=136.22 Aligned_cols=100 Identities=24% Similarity=0.336 Sum_probs=96.4
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
++.+.|.++++.+|+++|+++.++.+||+||.+++.++|++|.+.| .+|++|+++++|++++++++|||+++|++++|+
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l 80 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPL 80 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 5788899999999999999999999999999999999999999998 489999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++.++.+++.+++..++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v 101 (487)
T PRK07638 81 DIKWKQDELKERLAISNADMI 101 (487)
T ss_pred CccCCHHHHHHHHHhCCCCEE
Confidence 999999999999999999988
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-10 Score=139.33 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECC---------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHH
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQD---------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la 193 (1102)
..|+.+.+.+.++.+|+++|+++.+ +.+||+||.++++++|++|.+. +++||+|+++++|+++|++++||
T Consensus 33 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA 111 (612)
T PRK12476 33 GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFA 111 (612)
T ss_pred cCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHH
Confidence 4689999999999999999998621 4899999999999999999986 99999999999999999999999
Q ss_pred HHhcCCEEeec-cccch--HHHHhhhhccccceee
Q psy12852 194 AAKLGVISKLS-NVVWL--AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 194 ~~~~G~v~~~~-~~~~~--~~~~~~~l~~~~~~~l 225 (1102)
|+++|++++|+ ++.++ .+++.+++++++++++
T Consensus 112 ~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~l 146 (612)
T PRK12476 112 AIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVV 146 (612)
T ss_pred HHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEE
Confidence 99999999999 57776 7999999999999988
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=140.08 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.|+.+.+.+.++++|+++|+.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|+++|++++||++++|++++|
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.+++++++++++
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~ 104 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVAL 104 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEE
Confidence 9999999999999999999988
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=139.12 Aligned_cols=109 Identities=22% Similarity=0.350 Sum_probs=98.0
Q ss_pred cccccCCCCHH-HHHHHHHh-cCCCCcEEEECC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHH
Q psy12852 117 KRMAATNTTLV-SEFKKSVK-RRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190 (1102)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~-~~p~~~al~~~~----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~ 190 (1102)
.|+.....|+. +.+.+++. ..|+++|+.+.+ +.+||+||.+++.++|++|++.|+++||+|+++++|+++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 114 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFA 114 (570)
T ss_pred ccCCCCceeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence 46655556665 57777776 479999998743 6899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 191 WLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 191 ~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+||++++|++++|+++.++.+++.+++++++++++
T Consensus 115 ~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i 149 (570)
T PRK04319 115 LLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVL 149 (570)
T ss_pred HHHHHHcCcEEcccccccCHHHHHHHHHccCCcEE
Confidence 99999999999999999999999999999999988
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=148.59 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=96.4
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....++.+.|.++++++|+++|+++.++.+||+||.++++++|++|++.|+++||+|+++++|+++|+++++||+++|++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav 523 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV 523 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 44568999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+||. +++.+++++++++++
T Consensus 524 ~vpl~p~---~~l~~il~~s~~~~l 545 (994)
T PRK07868 524 AVLMPPD---TDLAAAVRLGGVTEI 545 (994)
T ss_pred EEEeCCc---hhHHHHHhccCCeEE
Confidence 9999995 688899999999887
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=153.56 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.++++.+|+++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~v 536 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWL 536 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++|.++.+++.+++++++++++
T Consensus 537 pld~~~p~~~~~~~l~~~~~~~~ 559 (1296)
T PRK10252 537 PLDTGYPDDRLKMMLEDARPSLL 559 (1296)
T ss_pred ecCccCHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999998
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=138.81 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=93.1
Q ss_pred CHHHHHHHHHhcCCCCcEEEECC---------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHH
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQD---------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~ 195 (1102)
++.+.|++++..+|+++|+++.+ +.+||+||.+++.++|++|++.| .+||+|+++++|+++|++++|||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 57788999999999999998632 68999999999999999999999 689999999999999999999999
Q ss_pred hcCCEEeeccc---cchHHHHhhhhccccceee
Q psy12852 196 KLGVISKLSNV---VWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 196 ~~G~v~~~~~~---~~~~~~~~~~l~~~~~~~l 225 (1102)
++|++++|+++ .++.+++.+++++++++++
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~i 113 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVV 113 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEE
Confidence 99999999997 5578999999999999998
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=140.27 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..|....|.+.+..+|+++|+.+.++.+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++
T Consensus 19 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v 98 (567)
T PLN02479 19 ALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVN 98 (567)
T ss_pred ccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEE
Confidence 35688889999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++.++.+++.++++.++++++
T Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~i 121 (567)
T PLN02479 99 CVNIRLNAPTIAFLLEHSKSEVV 121 (567)
T ss_pred EeccccCHHHHHHHHhhcCceEE
Confidence 99999999999999999999988
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=137.03 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=98.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEE--CC--eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYF--QD--ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~--~~--~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
....++.+.|+..++++|++++++. .+ +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|+++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 3446899999999999999999985 22 6899999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccccchHHHHhhhhccccceee
Q psy12852 197 LGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 197 ~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++++|+++.++.+++.++++.++++.+
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (542)
T PRK06018 87 IGAICHTVNPRLFPEQIAWIINHAEDRVV 115 (542)
T ss_pred cCeEeeccccccCHHHHHHHHhccCCCEE
Confidence 99999999999999999999999999998
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=136.08 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=100.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
+...++.+.+.++++.+|+++|+++.++.+||+||.++++++|..|.+.|+++|++|+++++|+++|+++++|++++|++
T Consensus 20 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 99 (527)
T TIGR02275 20 WQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIA 99 (527)
T ss_pred ccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++++++.++.+++.++++.++++++
T Consensus 100 ~v~~~~~~~~~~~~~~l~~~~~~~l 124 (527)
T TIGR02275 100 PVLALFSHRKSELTAYAQQIEPALY 124 (527)
T ss_pred EeccccccCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999988
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-10 Score=135.12 Aligned_cols=103 Identities=27% Similarity=0.458 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.+...++.+|+++|+.+.++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v 89 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV 89 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++.++.+++.++++.++++++
T Consensus 90 ~l~~~~~~~~i~~~l~~~~~~~i 112 (523)
T PRK08316 90 PVNFMLTGEELAYILDHSGARAF 112 (523)
T ss_pred ecccccCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999988
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=120.41 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=68.7
Q ss_pred HHHHhcCCCCcEEEEC------CeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 131 KKSVKRRPNAPCYYFQ------DETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 131 ~~~~~~~p~~~al~~~------~~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
...++.+|+++|+++. ++.+||+|+.++++++|+.|++ .|+++||||+++++|+++++++++|++++|++++|
T Consensus 3 ~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp 82 (227)
T TIGR03089 3 SPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVL 82 (227)
T ss_pred hhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Confidence 4567789999999752 2369999999999999999998 79999999999999999999999999999999999
Q ss_pred cc
Q psy12852 204 SN 205 (1102)
Q Consensus 204 ~~ 205 (1102)
+|
T Consensus 83 ~n 84 (227)
T TIGR03089 83 AG 84 (227)
T ss_pred CC
Confidence 97
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-10 Score=133.60 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.|.++++.+|+++|+++.++.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++++||++++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.++++.++++++
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~ 103 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLL 103 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999988
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=137.41 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.+.++.+|+++|+.+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|++++|++++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v 99 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVV 99 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 45899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceeee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIILE 226 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l~ 226 (1102)
|++|.++.+++.+++++++++++-
T Consensus 100 ~l~~~~~~~~l~~~i~~~~~~~vi 123 (541)
T TIGR03205 100 HLSPLDGERALSHKLSDSGARLLI 123 (541)
T ss_pred ecCCCCCHHHHHHHHhhcCceEEE
Confidence 999999999999999999999883
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=138.99 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.++.+.|.+++..+|+++|++..++.+||+||.++++++|++|.+. |+++||+|+++++|+++|++++|||+++|++++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v 103 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 4799999999999999999998888999999999999999999985 999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++.++.+++.+++++++++++
T Consensus 104 ~~~~~~~~~~l~~~l~~~~~~~~ 126 (562)
T PRK12492 104 NTNPLYTAREMRHQFKDSGARAL 126 (562)
T ss_pred ccCccCCHHHHHHHHhccCceEE
Confidence 99999999999999999999988
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=137.34 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEEC---------CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHH
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQ---------DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 192 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~---------~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~l 192 (1102)
...|+.+.+.++++.+|+++|+++. .+.+||+||.++++++|++|++. +++||+|+++++|+++|++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 3458999999999999999999863 15799999999999999999987 8999999999999999999999
Q ss_pred HHHhcCCEEeec-cccch--HHHHhhhhccccceee
Q psy12852 193 GAAKLGVISKLS-NVVWL--AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 193 a~~~~G~v~~~~-~~~~~--~~~~~~~l~~~~~~~l 225 (1102)
||+++|++++|+ ++..+ .+++.+++++++++++
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~v 133 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAI 133 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEE
Confidence 999999999999 45553 6889999999999988
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-10 Score=135.73 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEEC---CeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhc
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQ---DETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKL 197 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~---~~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~ 197 (1102)
...|+.+.++..+..+|+++|+++. .+.+||+||.+++.++|++|++ .|+++||+|+++++|+++++++++|++++
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~ 87 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM 87 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999874 3789999999999999999986 79999999999999999999999999999
Q ss_pred CCEEeeccccchHHHHhhhhccccceee
Q psy12852 198 GVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 198 G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++++|++|.++.+++.++++.++++++
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 115 (576)
T PRK05620 88 GAVFNPLNKQLMNDQIVHIINHAEDEVI 115 (576)
T ss_pred CCEEeecccccCHHHHHHHHhccCCcEE
Confidence 9999999999999999999999999988
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-10 Score=133.24 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEE-CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYF-QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~-~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
+.++.+.+.+.+ .+|+++|+.+ .++.+||+||.+++.++|.+|++.|+++||+|+++++|+++++++++|++++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 357888898888 8999999987 56789999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++.++.+++.++++..+++++
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~i 104 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALV 104 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEE
Confidence 999999999999999999999988
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-10 Score=134.40 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
++.+.+.+.+..+|+++|+.+.++.+||+||.+++.++|+.|++.|+++|++|+++++|+++|++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++.++.+++.++++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i 101 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELV 101 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEE
Confidence 999999999999999999988
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-10 Score=137.91 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.+.+.++.+|+++|++..++.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++++||+++|+++
T Consensus 8 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~ 87 (540)
T PRK06164 8 RADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV 87 (540)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEE
Confidence 34589999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++.++.+++.++++.++++++
T Consensus 88 v~l~~~~~~~~l~~~i~~~~~~~i 111 (540)
T PRK06164 88 IAVNTRYRSHEVAHILGRGRARWL 111 (540)
T ss_pred EecCCCCCcHHHHHHHHhcCccEE
Confidence 999999999999999999999988
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=143.06 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHHHhcCCC-CcEEEEC-CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 122 TNTTLVSEFKKSVKRRPN-APCYYFQ-DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~-~~al~~~-~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
...|+.+.|.+.++++|+ ++|+.+. .+.+||+||.++++++|++|++. +++||+|+++++|+++|++++||++++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 456899999999999998 6888763 37899999999999999999987 59999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+|+.++.+++.+++++++++++
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~v 306 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTI 306 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999999988
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=132.34 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=91.4
Q ss_pred HHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchH
Q psy12852 131 KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLA 210 (1102)
Q Consensus 131 ~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~ 210 (1102)
...++.+|+++|+.+.++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++|++++|++++|+++.++.
T Consensus 10 ~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~ 89 (458)
T PRK09029 10 RHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ 89 (458)
T ss_pred HHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccceee
Q psy12852 211 QLLGKKMVHFKGIIL 225 (1102)
Q Consensus 211 ~~~~~~l~~~~~~~l 225 (1102)
+++.++++.++++++
T Consensus 90 ~~~~~~~~~~~~~~~ 104 (458)
T PRK09029 90 PLLEELLPSLTLDFA 104 (458)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999888
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-10 Score=137.02 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECC--eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQD--ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~--~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..++.+.+.+.++++|+++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 15 GPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred cccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 3579999999999999999998743 47999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++.+
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~i 119 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVV 119 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEE
Confidence 9999999999999999999988877
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-10 Score=137.21 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=100.0
Q ss_pred ccCCCCHHHHHHHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhc
Q psy12852 120 AATNTTLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197 (1102)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~ 197 (1102)
.....++.+.|.+.++.+|+++|+++ .++.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 91 (559)
T PRK08315 12 PLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKI 91 (559)
T ss_pred ChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 34456899999999999999999987 5678999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeccccchHHHHhhhhccccceee
Q psy12852 198 GVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 198 G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++++|++|.++.+++..+++.++++++
T Consensus 92 G~~~v~l~~~~~~~~~~~~l~~~~~~~i 119 (559)
T PRK08315 92 GAILVTINPAYRLSELEYALNQSGCKAL 119 (559)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999987
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=132.52 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeecc
Q psy12852 126 LVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205 (1102)
Q Consensus 126 ~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~ 205 (1102)
+.+.|.+.+..+|+++|+.+.++.+||+||.+++.++|++|++.|+.+||+|+++++|++++++++|||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 81 (515)
T TIGR03098 2 LHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPIN 81 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCC
Confidence 67888899999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHhhhhccccceee
Q psy12852 206 VVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~~l 225 (1102)
+.++.+++..++++++++++
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~ 101 (515)
T TIGR03098 82 PLLKAEQVAHILADCNVRLL 101 (515)
T ss_pred CCCCHHHHHHHHHcCCCeEE
Confidence 99999999999999999988
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=145.10 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEC---C--eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQ---D--ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~---~--~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G 198 (1102)
.|+.+.+.+.++.+|+++|+.+. + +++||+|+.+++.++|++|++.|+++||+|+++++|++||+++++||+++|
T Consensus 427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G 506 (1452)
T PTZ00297 427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG 506 (1452)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 58999999999999999999742 3 689999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccccchHHHHhhhhccccceee
Q psy12852 199 VISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++||+++ +.+++.+++++++++++
T Consensus 507 aV~VPly~--t~~eL~yIL~~S~akvV 531 (1452)
T PTZ00297 507 FTTLPLVG--KGSTMRTLIDEHKIKVV 531 (1452)
T ss_pred CEEEeCCC--CHHHHHHHHHhcCCcEE
Confidence 99999986 46799999999999988
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-10 Score=136.04 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..++.+.|.+.++++|+++|+++ .++.+||+||.++++++|+.|.+.|+++||+|+++++|+++|++++||++++|++
T Consensus 17 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~ 96 (558)
T PRK12583 17 TQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAI 96 (558)
T ss_pred cCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCE
Confidence 35799999999999999999987 4578999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 97 ~v~l~~~~~~~~~~~~l~~~~~~~i 121 (558)
T PRK12583 97 LVNINPAYRASELEYALGQSGVRWV 121 (558)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999887
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=135.48 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
+.+..+.|++.++.+|+++|+.+.+..+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++||++++|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v 96 (545)
T PRK08162 17 PLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLN 96 (545)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEe
Confidence 35788999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++.++.+++.+++++++++.+
T Consensus 97 pl~~~~~~~~~~~~l~~~~~~~i 119 (545)
T PRK08162 97 TLNTRLDAASIAFMLRHGEAKVL 119 (545)
T ss_pred ccccccChHHHHHHHHhCCCeEE
Confidence 99999999999999999999988
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=134.38 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECC--eeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQD--ETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~--~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
.++.+.+... +.+|+++|+++.. ..+||+||.++++++|++|++ .|+++||+|+++++|+++|++++|||+++|++
T Consensus 40 ~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 118 (560)
T PLN02574 40 LDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI 118 (560)
T ss_pred CCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeE
Confidence 3444444444 5789999999853 379999999999999999999 99999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|++|.++.+++.++++.+.++++
T Consensus 119 ~v~l~p~~~~~~l~~~l~~~~~~~~ 143 (560)
T PLN02574 119 VTTMNPSSSLGEIKKRVVDCSVGLA 143 (560)
T ss_pred EeCcCcccCHHHHHHHHHhcCCEEE
Confidence 9999999999999999999999988
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=135.16 Aligned_cols=104 Identities=20% Similarity=0.342 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEE------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
..++.+.+.+.++.+|+++|+++ .++.+||+||.++++++|.+|++.|+++|++|+++++|+++++++++||++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 35899999999999999999985 236899999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccccchHHHHhhhhccccceeee
Q psy12852 197 LGVISKLSNVVWLAQLLGKKMVHFKGIILE 226 (1102)
Q Consensus 197 ~G~v~~~~~~~~~~~~~~~~l~~~~~~~l~ 226 (1102)
+|++++|+++.++.+++.+++++++++++-
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li 130 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADSKVFV 130 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999883
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-10 Score=136.15 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~-~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.++.+.|.+.++.+|+++|+++.++.+||+||.+++.++|+.|+ +.|+++||+|+++++|++++++++||++++|++++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 104 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVV 104 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEe
Confidence 47899999999999999999998899999999999999999997 58999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++|.++.+++.+++.+++++++
T Consensus 105 ~l~p~~~~~~~~~~l~~~~~~~v 127 (560)
T PRK08751 105 NVNPLYTPRELKHQLIDSGASVL 127 (560)
T ss_pred ccCccCCHHHHHHHHHhcCCeEE
Confidence 99999999999999999999887
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-10 Score=135.95 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.+.+.+..+|+++|+++.++.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 103 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ 103 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|.++.+++.++++.+.++.+
T Consensus 104 i~p~~~~~~l~~~l~~~~~~~i 125 (563)
T PRK06710 104 TNPLYTERELEYQLHDSGAKVI 125 (563)
T ss_pred cCcccCHHHHHHHHhccCCeEE
Confidence 9999999999999999999887
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=131.95 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEEC--C--eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhc
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQ--D--ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~--~--~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~ 197 (1102)
...++.+.++..++.+|+++++.+. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 4457889999999999998888752 2 57999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeccccchHHHHhhhhccccceee
Q psy12852 198 GVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 198 G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++++|+++.++++++.++++.++++++
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 115 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYV 115 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEE
Confidence 9999999999999999999999999987
|
|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-10 Score=91.46 Aligned_cols=54 Identities=24% Similarity=0.500 Sum_probs=49.5
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
+++|+.|+++| .|+.||||+|+++.+++.+.|+|+|||+.+.|+.++||++ |..
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l--~~~ 56 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPL--PEE 56 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecC--CCC
Confidence 47899999999 8999999999999876788999999999999999999999 643
|
Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished). |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=131.77 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=89.8
Q ss_pred HHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccch
Q psy12852 132 KSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWL 209 (1102)
Q Consensus 132 ~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~ 209 (1102)
.+++.+|+++|+.+ .++.+||+||.+.++++|++|++.|+++||+|+++++|+++|++++||++++|++++|+++.++
T Consensus 3 ~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~ 82 (488)
T PRK09088 3 FHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLS 82 (488)
T ss_pred hhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCC
Confidence 45678899999986 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccceee
Q psy12852 210 AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 210 ~~~~~~~l~~~~~~~l 225 (1102)
.+++.+++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~i 98 (488)
T PRK09088 83 ASELDALLQDAEPRLL 98 (488)
T ss_pred HHHHHHHHHhCCCCEE
Confidence 9999999999999998
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=130.65 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
+++.+.+.+.+..+|+++|+...++.+||+||.+++.++|..|.+.|+++|++|+++++|+.+|++++||++++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 36788999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++.++.+++.++++..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ 103 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLI 103 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEE
Confidence 9999999999999999999988
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.3e-10 Score=150.36 Aligned_cols=103 Identities=22% Similarity=0.307 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEE---------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHH
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYF---------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~---------~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la 193 (1102)
..++.+.|.++++.+|+++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++||
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 35799999999999999999985 346899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 194 AAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 194 ~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+++|++++|++|.++.+++.+++++++++++
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~l 346 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRAL 346 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999877
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=126.15 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=118.5
Q ss_pred HHhhhhHHHHhhhcccch---hHHHHHHhhhhhhHHH--HHHHHHhhhcccccccCCCCHHHHHHHHHh--cCCCCcEEE
Q psy12852 72 VGIVNPSLFFLRLNQFQD---IRVYIILLTLPRDVNI--IYSLSRAILGTKRMAATNTTLVSEFKKSVK--RRPNAPCYY 144 (1102)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~al~ 144 (1102)
+.....+|..+|.+|... -|...+.......-.. ..........++|+.....|..+++..+.. ..+++++++
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~~ 85 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKFPWPRCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAII 85 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCccccccccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcEEE
Confidence 455677888888887651 2222221111111111 112233445678898888898888776542 347888888
Q ss_pred ECC------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhc
Q psy12852 145 FQD------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMV 218 (1102)
Q Consensus 145 ~~~------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~ 218 (1102)
+.+ ..+||.|+.+.+.++|+.|++.|+++||+|++++|+.+|++++++||.++|++.+++...+++++++.+++
T Consensus 86 ~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~ 165 (626)
T KOG1175|consen 86 FEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQ 165 (626)
T ss_pred EEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHH
Confidence 732 35899999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cccceee
Q psy12852 219 HFKGIIL 225 (1102)
Q Consensus 219 ~~~~~~l 225 (1102)
++++|++
T Consensus 166 ~~~~k~i 172 (626)
T KOG1175|consen 166 DSKAKVI 172 (626)
T ss_pred hcCCCEE
Confidence 9999999
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=132.47 Aligned_cols=102 Identities=27% Similarity=0.396 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.++.+.|...++.+|+++|+++.++.+||+||.++++++|..|.+ .|+++|++|+++++|++++++++||++++|++++
T Consensus 23 ~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (560)
T PRK08974 23 QSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV 102 (560)
T ss_pred ccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence 479999999999999999999988999999999999999999985 8999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|++|.++.+++.++++.+.++.+
T Consensus 103 ~l~~~~~~~~~~~~l~~~~~~~i 125 (560)
T PRK08974 103 NVNPLYTPRELEHQLNDSGAKAI 125 (560)
T ss_pred ccCccCCHHHHHHHHHhcCceEE
Confidence 99999999999999999999888
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=130.63 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...|+.+.|.+.++++|+++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 89 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++|.++.+++.++++.+.++.+
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~ 113 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTL 113 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEE
Confidence 999999999999999999999887
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-09 Score=127.66 Aligned_cols=98 Identities=12% Similarity=0.227 Sum_probs=92.1
Q ss_pred HHHHHH-HhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccc
Q psy12852 128 SEFKKS-VKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNV 206 (1102)
Q Consensus 128 ~~~~~~-~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~ 206 (1102)
+.+.+. ++.+|+++|+++.++.+||.||.++++++|+.|.+.|+++|++|+++++|+++|+++++|++++|++++|+++
T Consensus 8 ~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~ 87 (508)
T TIGR02262 8 DLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNT 87 (508)
T ss_pred HHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccC
Confidence 344444 5669999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhhhccccceee
Q psy12852 207 VWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~l 225 (1102)
.++.+++.++++.+.++++
T Consensus 88 ~~~~~~l~~~~~~~~~~~~ 106 (508)
T TIGR02262 88 LLTADDYAYMLEDSRARVV 106 (508)
T ss_pred CCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999988
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=130.49 Aligned_cols=94 Identities=27% Similarity=0.357 Sum_probs=89.2
Q ss_pred HHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccch
Q psy12852 132 KSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWL 209 (1102)
Q Consensus 132 ~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~ 209 (1102)
.++..+|+++|+.+ .++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||++++|++++|+++.++
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 45677899999986 3679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccceee
Q psy12852 210 AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 210 ~~~~~~~l~~~~~~~l 225 (1102)
++++.+++.+++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~ 100 (501)
T PRK13390 85 APEADYIVGDSGARVL 100 (501)
T ss_pred HHHHHHHHHhcCCcEE
Confidence 9999999999999887
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=128.52 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.+.++++ |+++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++|+++++||+++|++++
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v 101 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPV 101 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEe
Confidence 4679999988886 99999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+..+.....++..+++.++++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l 124 (536)
T PRK10946 102 NALFSHQRSELNAYASQIEPALL 124 (536)
T ss_pred cCCccccHHHHHHHHhhcCCCEE
Confidence 77777778889999999999888
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=123.38 Aligned_cols=94 Identities=22% Similarity=0.348 Sum_probs=84.6
Q ss_pred HHHhcCCCC-cEEEECC---eeeeHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeecc
Q psy12852 132 KSVKRRPNA-PCYYFQD---ETWTIKQIDEYSNKIARILQDDG--FKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205 (1102)
Q Consensus 132 ~~~~~~p~~-~al~~~~---~~~Ty~el~~~~~~~a~~L~~~G--~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~ 205 (1102)
+.+...+++ +++++.. +.+||+|+.+++.|+|.+|.++| +++||+|++++||++++..+++||+.+|++..|+|
T Consensus 24 ~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~N 103 (537)
T KOG1176|consen 24 RPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLN 103 (537)
T ss_pred ccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccC
Confidence 333334444 7777644 89999999999999999999875 89999999999999999999999999999999999
Q ss_pred ccchHHHHhhhhccccceee
Q psy12852 206 VVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~~l 225 (1102)
|.+...++.+.++++.++++
T Consensus 104 p~~~~~ei~~~~~~s~~kii 123 (537)
T KOG1176|consen 104 PRLTASEIAKQLKDSKPKLI 123 (537)
T ss_pred cccCHHHHHHHHHhcCCeEE
Confidence 99999999999999999999
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-09 Score=128.30 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECC---eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQD---ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~---~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
.++.+.+...++.+|+.+++...+ +.+||+||+.++.++|++|++.|+++||+|+++++|+++|+++++|++++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 100 (579)
T PRK09192 21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLV 100 (579)
T ss_pred hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCe
Confidence 479999988888887665553322 67999999999999999999999999999999999999999999999999999
Q ss_pred Eeeccccch-------HHHHhhhhccccceee
Q psy12852 201 SKLSNVVWL-------AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~-------~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++ .+++.++++.++++++
T Consensus 101 ~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~i 132 (579)
T PRK09192 101 PVPLPLPMGFGGRESYIAQLRGMLASAQPAAI 132 (579)
T ss_pred eEeccCCcccccchHHHHHHHHHHHhcCCCEE
Confidence 999986443 6899999999999998
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=123.47 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCCcEEEECC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 126 LVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 126 ~~~~~~~~~~~~p~~~al~~~~----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
+.+.+++.++.+|+++|+++.+ +++||+||.++++++|++|.+. ++||+|+++++|++++++++||++++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 7788999999999999999876 7899999999999999999988 899999999999999999999999999987
Q ss_pred eecccc--------chHHHHhhhhccccceee
Q psy12852 202 KLSNVV--------WLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~--------~~~~~~~~~l~~~~~~~l 225 (1102)
+ +++. ...+++.+++.+++++++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 112 (525)
T PRK05851 82 S-ILPGPVRGADDGRWADATLTRFAGIGVRTV 112 (525)
T ss_pred c-CCCCCCCccchhhHHHHHHHHHHhcCCCEE
Confidence 5 4432 234566778888988887
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-09 Score=126.21 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=90.4
Q ss_pred HHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccc
Q psy12852 131 KKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVW 208 (1102)
Q Consensus 131 ~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~ 208 (1102)
...++.+|+++|+++ .++.+||+||.+++.++|+.|++.|+++|++|+++++|++++++++||++++|++++|+++.+
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~ 83 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL 83 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence 356778999999987 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhccccceee
Q psy12852 209 LAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 209 ~~~~~~~~l~~~~~~~l 225 (1102)
+.+++.++++.++++++
T Consensus 84 ~~~~l~~~l~~~~~~~l 100 (511)
T PRK13391 84 TPAEAAYIVDDSGARAL 100 (511)
T ss_pred CHHHHHHHHhccCCcEE
Confidence 99999999999999988
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=122.16 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=88.8
Q ss_pred CHHHHHHHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
++.+.+...+...|+++++.+ ..+.+||.||.++++++|++|++.|+++||+|+++++|+++|+++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 577888888999999999966 346899999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHH-------hhhhccccceee
Q psy12852 203 LSNVVWLAQLL-------GKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~-------~~~l~~~~~~~l 225 (1102)
|+++..+.+++ .++++.++++++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 112 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAV 112 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEE
Confidence 99988776544 445666777766
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=135.78 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=97.5
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEEC-CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQ-DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~-~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
....++.+.+.+.++++|+++|+++. ++.+||+||.++++++|++|++ ++++||+|+++++|+++++++++||+++|+
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 690 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGK 690 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence 34468999999999999999999974 5799999999999999999987 589999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+|+.++.+++.+++++++++++
T Consensus 691 v~v~l~~~~~~~~~~~~l~~~~~~~v 716 (1146)
T PRK08633 691 VPVNLNYTASEAALKSAIEQAQIKTV 716 (1146)
T ss_pred EEEEeCCCcCHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999988
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-08 Score=118.51 Aligned_cols=87 Identities=9% Similarity=-0.071 Sum_probs=82.3
Q ss_pred HhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHH
Q psy12852 134 VKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLL 213 (1102)
Q Consensus 134 ~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~ 213 (1102)
+...++++|+++.++.+||+||.++++++|..|+ +||+|+++++|+++|+++++||+++|++++|+++.++.+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 4456899999999999999999999999999986 57999999999999999999999999999999999999999
Q ss_pred hhhhccccceee
Q psy12852 214 GKKMVHFKGIIL 225 (1102)
Q Consensus 214 ~~~l~~~~~~~l 225 (1102)
.+++++++++++
T Consensus 85 ~~~l~~~~~~~i 96 (471)
T PRK07787 85 RHILADSGAQAW 96 (471)
T ss_pred HHHHHhcCCCEE
Confidence 999999999988
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-08 Score=134.12 Aligned_cols=102 Identities=11% Similarity=0.031 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHhcCC-CCcEEEE-CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRP-NAPCYYF-QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p-~~~al~~-~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..++.+.+.+.++++| +++|+.+ .++.+||+||.++++++|+.|++ |+++||+|+++++|+++++++++|++++|++
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 4578888888888886 5677765 46789999999999999999975 9999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+|+.++.+++.+++++++++++
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~v 733 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTV 733 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999988
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-08 Score=119.06 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccc
Q psy12852 141 PCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHF 220 (1102)
Q Consensus 141 ~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~ 220 (1102)
.|++..++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|++++|++++|+++.++.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 36777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee
Q psy12852 221 KGIIL 225 (1102)
Q Consensus 221 ~~~~l 225 (1102)
.++++
T Consensus 83 ~~~~i 87 (509)
T PRK12406 83 GARVL 87 (509)
T ss_pred CCcEE
Confidence 99888
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.9e-08 Score=112.94 Aligned_cols=112 Identities=8% Similarity=-0.101 Sum_probs=91.2
Q ss_pred EEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhcccc
Q psy12852 142 CYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFK 221 (1102)
Q Consensus 142 al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~ 221 (1102)
+|++.++.+||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 46778899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceeeehhhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCC
Q psy12852 222 GIILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKS 267 (1102)
Q Consensus 222 ~~~l~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~ 267 (1102)
++++-....... . .. .....+++.++..||++.
T Consensus 80 ~~~~i~~~~~~~---~----~~------~~~~~~~~~~~i~~TSGt 112 (414)
T PRK08308 80 CHGLLYGESDFT---K----LE------AVNYLAEEPSLLQYSSGT 112 (414)
T ss_pred CCEEEecCcccc---c----cc------CCCCCCCCceEEEECCCC
Confidence 988732210000 0 00 011246778888888765
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-08 Score=113.66 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=73.9
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 149 TWTIKQIDEYSNKIARILQDDGF-KKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 149 ~~Ty~el~~~~~~~a~~L~~~G~-~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
.+.|+||.++++++|++|++.|+ ++|++|+++++|+++++++++|++++|++++|+||.++.+++.+++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~ 96 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQI 96 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEE
Confidence 46899999999999999999988 579999999999999999999999999999999999999999999999999888
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=102.77 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECC-----------------------eeeeHHHHHHHHHHHHHHHHHCCCCCCCE-EEE
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQD-----------------------ETWTIKQIDEYSNKIARILQDDGFKKGDV-LAL 179 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~-----------------------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~-Vai 179 (1102)
.|+++.|....+++.++.++.+++ .++||.|+.+++.++|++|.+.|++++++ ++|
T Consensus 41 ~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~i 120 (678)
T KOG1180|consen 41 STLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAI 120 (678)
T ss_pred ccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 355565655555555555554321 57899999999999999999999998777 999
Q ss_pred EcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 180 MCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 180 ~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++..+.+|+.+++||.+.+..+|.++..++.+.+.|-++.+..+.+
T Consensus 121 Fa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i 166 (678)
T KOG1180|consen 121 FAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAI 166 (678)
T ss_pred EecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEE
Confidence 9999999999999999999999999999999999999999988888
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=111.71 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=74.0
Q ss_pred eHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 151 Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
||+||.++++++|+.|++.|+++||+|+++++|+++++++++|++++|++++|+++.++.+++.+++++.+++.+
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLL 75 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=113.50 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.++.+.|.+.+...|+++|+.+.+..+||+|+..+++++|..|.+.|+.+|++|+++++.++++++.++|++++|+.++|
T Consensus 227 ~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP 306 (642)
T COG1020 227 LTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306 (642)
T ss_pred chHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEec
Confidence 57999999999999999999998899999999999999999999999999999999998899999999999999999999
Q ss_pred ccccchHHHHhhhhccccceeee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIILE 226 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l~ 226 (1102)
+++.++.+++.++++++.++.+-
T Consensus 307 ~d~~~P~~r~~~~l~~~~~~~~~ 329 (642)
T COG1020 307 LDPLYPAERLAYILEDSRPTLLL 329 (642)
T ss_pred CCCCChHHHHHHHHhhcCccEEE
Confidence 99999999999999999999883
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=114.28 Aligned_cols=85 Identities=25% Similarity=0.300 Sum_probs=81.1
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccc
Q psy12852 141 PCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHF 220 (1102)
Q Consensus 141 ~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~ 220 (1102)
+++.+.++.+||+||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++.
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee
Q psy12852 221 KGIIL 225 (1102)
Q Consensus 221 ~~~~l 225 (1102)
.++++
T Consensus 83 ~~~~i 87 (502)
T PRK08276 83 GAKVL 87 (502)
T ss_pred CCCEE
Confidence 99988
|
|
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-09 Score=86.10 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=53.0
Q ss_pred cCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1037 NDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1037 ~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+|+++++. ...++++++||++|+||+.+++++..+++. |++++..++|++||+++|++
T Consensus 4 ~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~ 65 (67)
T PF00550_consen 4 REIIAEVLGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAE 65 (67)
T ss_dssp HHHHHHHHTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHH
T ss_pred HHHHHHHHCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHh
Confidence 3456666664 368999999999999999999999999887 99999999999999999875
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.2e-07 Score=104.16 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=73.7
Q ss_pred eHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 151 TIKQIDEYSNKIARILQD-DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 151 Ty~el~~~~~~~a~~L~~-~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
||+||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.+
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~i 76 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLL 76 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEE
Confidence 799999999999999998 899999999999999999999999999999999999999999999999999999988
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.5e-06 Score=91.58 Aligned_cols=226 Identities=18% Similarity=0.176 Sum_probs=121.7
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc---cC-CCCC-cEEEEecCchhhhh----HHHHHHhHhhcCce
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---LS-LGSG-DVIYNCLPMYHSAG----GLIGTIPALILGSS 706 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~-~~~~-d~~l~~~pl~~~~~----~~~~i~~~l~~G~~ 706 (1102)
++++..++-||||||.|--+.+.+..+......+... +. .... -.++...|-..... ........+..+..
T Consensus 88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 167 (365)
T PF04443_consen 88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR 167 (365)
T ss_pred hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence 4566788999999999865666665555544333322 22 2211 12333333322111 12223333445555
Q ss_pred EEEeC-CCCHhHHHHHHh----hcccccccccHHHHHHHHhc----cCCcccc-ccceeeeec------cCCCH-HHHHH
Q psy12852 707 IAIRT-KFSASNYFRDCA----KYKCNAGIYIGEMCRYLLAS----KESEADY-SHQVVKMIG------VGMRG-DIWAK 769 (1102)
Q Consensus 707 lv~~~-~~~~~~l~~~i~----~~~vt~~~~~Ps~~~~l~~~----~~~~~~~-~l~~~~~~G------e~l~~-~~~~~ 769 (1102)
-.+-. .++.+.+...+. +.++..++..|.++-.++.. ......+ .+.++-.|| |.++. ++.+.
T Consensus 168 ~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~ 247 (365)
T PF04443_consen 168 FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYAR 247 (365)
T ss_pred eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHH
Confidence 33322 267777666664 44567778877765544432 2221222 223333342 56765 55566
Q ss_pred HHHHhCc---chhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCc
Q psy12852 770 FVKRFHV---QTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPG 846 (1102)
Q Consensus 770 ~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~G 846 (1102)
+.+.|+. ..+++.||+||.......... +.. .. .++ +.+.|+++. .++|.|++|
T Consensus 248 l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~~--~~----p~w-V~iRDp~tl-----------~~~~~Ge~G 304 (365)
T PF04443_consen 248 LQEVFGVIPIENIYDMYGMTELNSQAYECGH-----GHF--HV----PPW-VIIRDPETL-----------EPLPPGETG 304 (365)
T ss_pred HHHHHCCCCHHHeeeeeeccccchhheeCCC-----Ccc--cC----CCe-EEEECCCCC-----------cCCCCCCee
Confidence 6677865 589999999997754432211 110 01 233 555576654 456888888
Q ss_pred ceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecC--------ccEEEEccCCC
Q psy12852 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL--------GYLYFKDRTGD 908 (1102)
Q Consensus 847 el~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d--------G~l~~~GR~dd 908 (1102)
-+-+ -.+.. ..| + +..-|.|+|.+..+ ..++++||.+.
T Consensus 305 li~v----idl~~--~s~----------------p--~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 305 LIQV----IDLAN--TSY----------------P--GFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred EEEE----Ecccc--cCC----------------C--cEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 7642 13311 011 1 23669999988654 26999999874
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=104.07 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=94.9
Q ss_pred cccceeeeeccCCCHHHHHHHHHHhCcc-hhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCC
Q psy12852 750 YSHQVVKMIGVGMRGDIWAKFVKRFHVQ-TIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQP 828 (1102)
Q Consensus 750 ~~l~~~~~~Ge~l~~~~~~~~~~~~~~~-~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~ 828 (1102)
+.++++.+.+..-...-.+++.+.+|.+ .+...|++||+-+.. ..+ ++..+.... +.. .=...+.+++.....
T Consensus 267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i-~~~--~~~~~~~l~--~~~-~ffEFip~~~~~~~~ 340 (528)
T PF03321_consen 267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGI-PLD--PEDPGYVLA--PDS-GFFEFIPVDEDEQNP 340 (528)
T ss_dssp TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEE-ES---CCC--EEE---TTS-SEEEEEE-STT----
T ss_pred CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEE-ecC--CCCCceEee--cCC-eEEEEEeccCCcccc
Confidence 4666565554444456677777778764 344799999964433 222 111121111 111 111223333221101
Q ss_pred cCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEec--Cc--cEEEEc
Q psy12852 829 IRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE--LG--YLYFKD 904 (1102)
Q Consensus 829 i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~--dG--~l~~~G 904 (1102)
..+++...+..+..|+.=|+++. .. .|.+. |+.||++++.. ++ .++|+|
T Consensus 341 ~~~~~~l~~~ele~G~~YelviT----t~----~GLyR-------------------Y~iGDvVrv~gf~~~~P~i~F~~ 393 (528)
T PF03321_consen 341 SEQPKTLLLHELEVGEEYELVIT----TN----SGLYR-------------------YRIGDVVRVTGFYNQTPRIEFVG 393 (528)
T ss_dssp ---SSSEEGGG--TT-EEEEEEE----ST----TS-SS-------------------EEECEEEEEEEEETTEEEEEEEE
T ss_pred cCCCceecHHHhcCCCeEEEEEe----cc----cceee-------------------eecCCEEEEeeccCCCcEEEEec
Confidence 22233334555566665565533 22 13222 99999999863 34 699999
Q ss_pred cCCCeEEeCceeechHHHHHHHHhc---C--CcceeEEEEEEcCCCCCceeEEEEEc-CCCccCHHHHHHHHHccC
Q psy12852 905 RTGDTYRWKGENVSTMEVEATISKY---L--PYTEFTVYGVKVGDLDGRAGMIAIVD-TSNQVDLKLLVQGLDANL 974 (1102)
Q Consensus 905 R~dd~Iki~G~ri~~~eIE~~l~~~---~--~V~~a~vv~~~~~~~~~~~~l~~~v~-~~~~~~~~~l~~~l~~~L 974 (1102)
|.+.++.+.|+++.-.+|+.++.+. . .+.+..+....... .....++++. .....+.+++.+.|.+.|
T Consensus 394 R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~--~~~~Y~~~~e~~~~~~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 394 RRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSG--NPPHYVLFWELEGEPDDLEELAKALDESL 467 (528)
T ss_dssp ETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SS--SSBEEEEEEEECS-HHHHHHHHHHHHHCS
T ss_pred cCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccC--CCCceEEEEEeCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999876 2 35566665421112 2223333332 222334556666666665
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >KOG2279|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-07 Score=102.16 Aligned_cols=137 Identities=24% Similarity=0.176 Sum_probs=101.0
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCCcc--EEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecCC
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDSEL--AMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLE 329 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~--~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~ 329 (1102)
.+..+-.|++. +.++.|.||.+....++.. +.+.||||| +..+.+++||++| ..+..||||+-+..|+-+.|.+
T Consensus 456 P~~~t~~sAAp-~g~~awpra~lvd~~det~l~I~~~~VdyG-Y~~~~~ddlrqiR--sd~~slPfq~tEv~l~~v~pl~ 531 (608)
T KOG2279|consen 456 PLVATISSAAP-TGISAWPRAYLVDTSDETKLDIGLELVDYG-YAIELPDDLRQIR--SDPDSLPFQATEVDLSLVTPLT 531 (608)
T ss_pred chhhceeeecc-cCCCCccceEEEeccCcccchhhheeeccc-ccccchhhhhhhh--cccccCCcccchhhHhheeccC
Confidence 34667778886 7778999999998774433 678999999 9999999999996 4566999999999999999997
Q ss_pred C--CCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEc--CC----CcccHHHHHHHcCcceeeccc
Q psy12852 330 G--VWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFD--LD----EELNINKELVALDLAKFSEDA 394 (1102)
Q Consensus 330 ~--~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~--~~----~~~~i~~~Lv~~gla~~~~~~ 394 (1102)
+ .||++|..-|..++.. +.......+...+.....+.++. .+ +.+-+++-|.+.|+|......
T Consensus 532 ~t~~~Spea~h~~s~Msi~--~~a~~~~v~~~~dt~Lp~~ql~s~~~D~k~~n~vk~~q~l~ecGla~~ad~y 602 (608)
T KOG2279|consen 532 ETKKSSPEATHTLSCMSIS--EAASMSGVDNLEDTYLPGSQLFSLLSDLKCCNSVKHAQPLNECGLASVADLY 602 (608)
T ss_pred CCcCcCcccccchhhhhhh--hhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhcccccccccc
Confidence 6 9999999999887432 22222233333333344555544 22 346688899999999886443
|
|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.8e-06 Score=67.14 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=50.5
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEe--cCCeeEecCCCcccCCcccc
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVD--YSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvD--yGn~~~v~~~~lr~l~~~~~ 309 (1102)
++.|+.+-+.|+.++.||+|+|+++..++.+.|+|.| +|+.+.++.++||++ +++
T Consensus 3 ~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~--~~w 59 (61)
T smart00743 3 FKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPH--PPW 59 (61)
T ss_pred cCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccC--CCC
Confidence 4789999999988899999999999887789999999 999999999999999 654
|
Domain in plant sequences with possible chromatin-associated functions. |
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0017 Score=76.84 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=38.9
Q ss_pred EEecceeEEe----cCccEEEEccCCCeEEeCceeechHHHHHHHHhcC
Q psy12852 886 FLSGDMMVMD----ELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930 (1102)
Q Consensus 886 yrTGDl~~~~----~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~ 930 (1102)
||.||+++.. ..-.+.|+||.+.+..+.|.+..-.++..++.+..
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a~ 465 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAK 465 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHHH
Confidence 9999998874 34569999999999999999999999988887643
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0022 Score=76.68 Aligned_cols=43 Identities=9% Similarity=0.271 Sum_probs=39.0
Q ss_pred EEecceeEEecC----ccEEEEccCCCeEEeCceeechHHHHHHHHh
Q psy12852 886 FLSGDMMVMDEL----GYLYFKDRTGDTYRWKGENVSTMEVEATISK 928 (1102)
Q Consensus 886 yrTGDl~~~~~d----G~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~ 928 (1102)
|+.||.+++..- -.|.|+||.+.++.+.|+++.-.+++.+|.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 999999998642 3699999999999999999999999999987
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=76.65 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=38.6
Q ss_pred EEecceeEEe----cCccEEEEccCCCeEEeCceeechHHHHHHHHhcC
Q psy12852 886 FLSGDMMVMD----ELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930 (1102)
Q Consensus 886 yrTGDl~~~~----~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~ 930 (1102)
||.||+++.. ..-.+.|+||.+.+..+.|.+.+-.++..++.+.-
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~ 471 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAV 471 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHH
Confidence 9999998875 34569999999999999999999999988886543
|
|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.7e-05 Score=82.06 Aligned_cols=54 Identities=19% Similarity=0.451 Sum_probs=45.8
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
..+++|+.|.|.|+.|+.||.|+|.+|..+ +.+.|.|.+|||.|.|.+++|++.
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~dL~~~ 121 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSDLKPS 121 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEEET
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhhhccc
Confidence 457899999999999999999999999854 578899999999999999999999
|
The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A. |
| >COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=1.6e-05 Score=63.11 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred hhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEecccccc
Q psy12852 1047 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDV 1093 (1102)
Q Consensus 1047 ~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~ 1093 (1102)
.+.+...+|....|-||+..|+|+.+.|+.|..+++.++.++|||++
T Consensus 15 ~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~G~~i~F~~La~~PTl~a 61 (74)
T COG3433 15 VEELDDQENLIDYGLDSIRMMALLERWRKRGADIDFAQLAANPTLAA 61 (74)
T ss_pred hhhcCchhhHHHhchhHHHHHHHHHHHHHcCCcccHHHHHhCccHHH
Confidence 36789999999999999999999999999999999999999999974
|
|
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00043 Score=60.49 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=48.7
Q ss_pred hcCCCcchhhhh-hh-cCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1036 MNDQPGMIIGEI-KQ-SDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1036 l~~~~~~~l~~~-~~-i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+...|...++.. .. ++.+.+||++|+||+.++.+...+++. +..+++.++|.+||+..+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~ 80 (86)
T smart00823 17 VREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAE 80 (86)
T ss_pred HHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHH
Confidence 333444444431 12 588999999999999999999999876 99999999999999998875
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
| >CHL00124 acpP acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.00041 Score=60.23 Aligned_cols=63 Identities=5% Similarity=-0.104 Sum_probs=52.1
Q ss_pred hhcCCCcchhhh-hhhcCCCCcccc-ccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1035 IMNDQPGMIIGE-IKQSDPSRHFYG-YADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1035 ~l~~~~~~~l~~-~~~i~~~~~Ff~-lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.+..+.+..++. .+.++++.+|.+ +|.||+..+.++.++++. |+.++..++...+|+++++++
T Consensus 9 ~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~ 74 (82)
T CHL00124 9 KVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDF 74 (82)
T ss_pred HHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHH
Confidence 334444555554 467999999998 999999999999999765 999999999999999998753
|
|
| >PRK00982 acpP acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.00056 Score=58.77 Aligned_cols=60 Identities=7% Similarity=-0.066 Sum_probs=50.3
Q ss_pred CCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1038 DQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1038 ~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
...+++++. .+.+..+.+| -++|-||+..+.++.+++++ |+.++..++++.+|+++++..
T Consensus 10 ~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~ 72 (78)
T PRK00982 10 KIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDY 72 (78)
T ss_pred HHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHH
Confidence 334445554 4679999999 79999999999999999765 999999999999999998753
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0061 Score=73.55 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=44.1
Q ss_pred cCCChhHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceeee
Q psy12852 181 CENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIILE 226 (1102)
Q Consensus 181 ~~n~~e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l~ 226 (1102)
++|++|+++++|||+++|++++|+|+.++.+++.+++++++++++-
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li 46 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVF 46 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEE
Confidence 5899999999999999999999999999999999999999999883
|
|
| >PRK09184 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0018 Score=56.44 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=50.0
Q ss_pred HhhhcCCCcchhh----hhhhcCCCCcccc--ccCchhhHHHHHHhhhCC-CCccce---EEEEeccccccccCC
Q psy12852 1033 EKIMNDQPGMIIG----EIKQSDPSRHFYG--YADKKESQKKILENVFKP-GDKYFL---SVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~----~~~~i~~~~~Ff~--lGgdSl~a~~l~~~l~~~-g~~l~~---~~l~~~pti~~laa~ 1097 (1102)
.+.+..+..+.++ .++.|..+.+||. +|.|||.++.|+..+++. |+.++- ..+...+|+++|+.+
T Consensus 8 ~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~ 82 (89)
T PRK09184 8 ERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAY 82 (89)
T ss_pred HHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHH
Confidence 3344445555555 2478999999966 999999999999999875 999964 346678999998864
|
|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.025 Score=43.13 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=38.7
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecC-CCccEEEEEEecCCeeEecCCCcc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTS-DSELAMILFVDYSDKQEIPYEDLV 302 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~-~~~~~~V~fvDyGn~~~v~~~~lr 302 (1102)
....|+.+.+.+..++.||.++|++.. ..+...|.|-| |....++.++|+
T Consensus 5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT-S-EEEEECCCEE
T ss_pred cccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC-CCEEEecccccC
Confidence 347899999999999999999999976 45578999999 999999888774
|
It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A. |
| >PRK05883 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0021 Score=56.55 Aligned_cols=71 Identities=6% Similarity=-0.019 Sum_probs=58.8
Q ss_pred cCHHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1027 MTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1027 ~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
...+...+.+..+.+..++. .+.|..+.+|+ ++|-|||..+.++..++++ |+.++..++...+|+++|+++
T Consensus 10 ~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~ 83 (91)
T PRK05883 10 SSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAA 83 (91)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHH
Confidence 34455566666677777776 57899999995 7999999999999999765 999999999999999998754
|
|
| >PRK12449 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.002 Score=55.65 Aligned_cols=62 Identities=8% Similarity=-0.160 Sum_probs=51.0
Q ss_pred hcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1036 MNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1036 l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+..+.+..++. ...+..+.+|+ ++|-||+..+.|+.++++. |+.++..++.+.+|+++++++
T Consensus 10 l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~ 74 (80)
T PRK12449 10 LINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDY 74 (80)
T ss_pred HHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHH
Confidence 33444455543 35799999996 9999999999999999765 999999999999999998764
|
|
| >PRK07081 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.0052 Score=53.15 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=43.8
Q ss_pred hhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEe--ccccccccC
Q psy12852 1048 KQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIR--NFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~--~pti~~laa 1096 (1102)
+.++.+.+|+++|-||+.++.|+..|+++ |+.++-.++.. .+|+..|++
T Consensus 20 ~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~ 71 (83)
T PRK07081 20 DSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAG 71 (83)
T ss_pred HhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHH
Confidence 57999999999999999999999999875 99999999875 788888765
|
|
| >TIGR00517 acyl_carrier acyl carrier protein | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.003 Score=54.02 Aligned_cols=59 Identities=5% Similarity=-0.104 Sum_probs=48.7
Q ss_pred CCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1039 QPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1039 ~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+.+..++. ...+..+.+|+ ++|-||+..+.|+..+++. |+.++..++...+|+++++++
T Consensus 11 il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~ 72 (77)
T TIGR00517 11 IIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDY 72 (77)
T ss_pred HHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHH
Confidence 33444444 35789999996 6999999999999999875 999999999999999988754
|
S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. |
| >PRK05350 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.0037 Score=54.14 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=52.1
Q ss_pred hhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1034 KIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1034 ~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+.+..+.+..++. ...+..+.+| -++|-|||..+.++..+++. |+.++..++.+.+|+++++++
T Consensus 9 ~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~ 75 (82)
T PRK05350 9 ERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDA 75 (82)
T ss_pred HHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHH
Confidence 3344444455554 4689999995 89999999999999999875 999999999999999998754
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.065 Score=47.98 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred ceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCcc-----C----HHHHHHHHHccCCCCCcce-EE
Q psy12852 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV-----D----LKLLVQGLDANLPAYARPL-FV 983 (1102)
Q Consensus 914 G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~-----~----~~~l~~~l~~~Lp~~~~P~-~i 983 (1102)
|.+|+|..||++|.++|++....-+.+...+ +...+.+.+...... + .++|.+.+++.|.- -|. .+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~--~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~~V~l 76 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREG--GLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RPEVEL 76 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEET--TEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCC--CCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eEEEEE
Confidence 7899999999999999999954444444443 344454545222222 2 23455555555432 232 44
Q ss_pred EEecCccCCCCccchh
Q psy12852 984 RIMKAIEMTGTFKIKK 999 (1102)
Q Consensus 984 ~~l~~lP~t~~GKidr 999 (1102)
+.-.+||++ .||..|
T Consensus 77 v~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 77 VPPGTLPRS-EGKAKR 91 (96)
T ss_dssp E-TT-S----SSSS-S
T ss_pred ECCCCccCC-CCcceE
Confidence 455579998 578765
|
|
| >smart00318 SNc Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.44 Score=46.03 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=62.1
Q ss_pred EEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecC------------CCCCCHHHH
Q psy12852 270 NRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPL------------EGVWSQAAY 337 (1102)
Q Consensus 270 yRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~------------~~~Ws~ea~ 337 (1102)
+.++|..+.+.+.+.|.+.+- +.+..+|+||..+ ...|..+|.
T Consensus 3 ~~~~V~~V~DGDT~~v~~~~~-------------------------~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~ 57 (138)
T smart00318 3 IRGVVERVLDGDTIRVRLPKN-------------------------KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAK 57 (138)
T ss_pred eeEEEEEEecCCEEEEEeCCC-------------------------CEEEEEEEeccCCccCCCCCCCccccCcHHHHHH
Confidence 567788888777776655332 2233444444433 136789999
Q ss_pred HHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHcCcceeecccc
Q psy12852 338 DFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSEDAN 395 (1102)
Q Consensus 338 ~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~~~~~ 395 (1102)
++++++ +..+.+.+.+......+. +...++.. ++.+||..|++.|+|.......
T Consensus 58 ~~l~~~--l~g~~V~~~~~~~D~~gr-~~a~v~~~-~~~~l~~~Lv~~G~A~~~~~~~ 111 (138)
T smart00318 58 EFLKKL--LLGKKVQVEVDSKDRYGR-FLGTVYLN-GGNNIAEELVKEGLAKVYRYAD 111 (138)
T ss_pred HHHHHH--hCCCEEEEEEeccCCCCC-EEEEEEEC-CCCcHHHHHHhcCCEEEEEecC
Confidence 999998 556777777765333333 33344432 3457999999999999875443
|
|
| >PRK07117 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.0077 Score=51.31 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=48.6
Q ss_pred hhcCCCcchh-hh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1035 IMNDQPGMII-GE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1035 ~l~~~~~~~l-~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..+....+ +. .+.|..+.+|.+||.|||-.+.++..+.+. |+.++-.++-+-.|+.++++
T Consensus 9 ~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~ 73 (79)
T PRK07117 9 ILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELAD 73 (79)
T ss_pred HHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHH
Confidence 3334444555 33 468999999999999999999999999875 99999888877777777654
|
|
| >PRK05828 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.01 Score=51.21 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=43.4
Q ss_pred hhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1048 KQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+.+.++.+|.+||.|||..+.++..+.+. |+.++-.++-+-.|++++..
T Consensus 24 d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~ 73 (84)
T PRK05828 24 DESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLIL 73 (84)
T ss_pred ccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHH
Confidence 67888999999999999999999999865 99999888888888887654
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.09 Score=66.08 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=76.4
Q ss_pred CHHHHHHHHHhcCCCCcEEEEC--------CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQ--------DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~--------~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
++...+.+.+...|...+..+. -..+||++.+..++.+++.|...|...|+.|++++..+.++++..+++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 4666777888888887776651 15799999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccccch
Q psy12852 197 LGVISKLSNVVWL 209 (1102)
Q Consensus 197 ~G~v~~~~~~~~~ 209 (1102)
.|..+++++|.++
T Consensus 117 ~g~~~~~idp~~~ 129 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWP 129 (1032)
T ss_pred cceEEEEecCCCc
Confidence 9999999999999
|
|
| >PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.47 Score=43.46 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=46.9
Q ss_pred EEeeceecC--------CCCCCHHHHHHHHHHHhhhceEEEEEEEee-ecCceeEEEEEEcCCCcccHHHHHHHcCccee
Q psy12852 320 CYLAGVEPL--------EGVWSQAAYDFLDDFTRLFARVVSVKLHGE-ETGGRRYAVELFDLDEELNINKELVALDLAKF 390 (1102)
Q Consensus 320 c~L~~v~p~--------~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~-~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~ 390 (1102)
.+|.||+-+ ...|..+|.+++++++ ..+.+.+.+... .+....+...++.. +.+||..|++.|+|..
T Consensus 2 vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l--~~~~~~~~~~~~~~d~~gr~~~~v~~~--~~~in~~Ll~~GlA~v 77 (108)
T PF00565_consen 2 VRLAGIDAPETNQPDKPEEPYGQEAKEFLRELL--LGRQVVVEVDDIKQDKYGRLLAYVYVD--GEDINEELLEEGLARV 77 (108)
T ss_dssp EEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHH--HTCSCEEEEEESSBSTTSCEEEEEEET--TEEHHHHHHHTTSSEE
T ss_pred EEEEEEECCCCCCCCCccchHHHHHHHHHHHHh--CCCeeeecccccCCCCCCceeEEEEEe--chhhhHHHHhCCeEEE
Confidence 468888733 2489999999999984 434444444443 23333455566553 7899999999999997
Q ss_pred ec
Q psy12852 391 SE 392 (1102)
Q Consensus 391 ~~ 392 (1102)
..
T Consensus 78 ~~ 79 (108)
T PF00565_consen 78 YR 79 (108)
T ss_dssp -C
T ss_pred EE
Confidence 75
|
Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A .... |
| >COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.016 Score=49.88 Aligned_cols=57 Identities=5% Similarity=-0.060 Sum_probs=46.4
Q ss_pred cchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1041 GMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1041 ~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
...++. ...+..+.+|. ++|.|||.++.|+..|+++ |+.++..++....|+++++.+
T Consensus 15 ~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~ 74 (80)
T COG0236 15 AEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDY 74 (80)
T ss_pred HHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHH
Confidence 334443 25688899998 5999999999999999875 999999999888888877653
|
|
| >PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.27 Score=40.71 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=34.1
Q ss_pred CCCceeEEEeCC---CCcEEEeEeeecCCCccEEEEEEecC--------CeeEecCCCcccCCcccc
Q psy12852 254 HPGLLCLARSDD---KSGYNRVQVTDTSDSELAMILFVDYS--------DKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 254 ~~G~~c~a~ft~---d~~wyRa~I~~~~~~~~~~V~fvDyG--------n~~~v~~~~lr~l~~~~~ 309 (1102)
++|+.+-+.... .+.||+|+|++...++.+.|.|-|+- ..+.|+...|||. |+.
T Consensus 2 ~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~--pP~ 66 (68)
T PF05641_consen 2 KKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPC--PPP 66 (68)
T ss_dssp -TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGGGEEE------
T ss_pred CCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechheEECc--CcC
Confidence 467776665433 35799999999987768889996554 3678999999999 654
|
The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A. |
| >PRK07639 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.044 Score=47.69 Aligned_cols=61 Identities=0% Similarity=-0.169 Sum_probs=45.4
Q ss_pred hcCCCcchhhh--hhhcCCCCcccc-ccCchhhHHHHHHhhhCC-CCccceEEE--EeccccccccC
Q psy12852 1036 MNDQPGMIIGE--IKQSDPSRHFYG-YADKKESQKKILENVFKP-GDKYFLSVI--IRNFSLDVMAP 1096 (1102)
Q Consensus 1036 l~~~~~~~l~~--~~~i~~~~~Ff~-lGgdSl~a~~l~~~l~~~-g~~l~~~~l--~~~pti~~laa 1096 (1102)
+..+....++. .+.+..+.+|++ +|.||+.++.|+..|++. |+.++-.++ -.--|+..+++
T Consensus 10 i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~ 76 (86)
T PRK07639 10 VLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLD 76 (86)
T ss_pred HHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHH
Confidence 33344444444 256899999987 999999999999999875 999987776 25557776654
|
|
| >KOG4327|consensus | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.14 Score=49.90 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=46.5
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecC-CCccEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTS-DSELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~-~~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
..+++|+-|.+.|.+++..|-|.|..+. ..+...|.|+-|||.+.|.+++|.+=
T Consensus 66 ~~wKVgdkc~A~Y~e~g~~ypatidsi~~~~~tcvv~ylgygnr~Ev~lsDLl~~ 120 (218)
T KOG4327|consen 66 QQWKVGDKCSAIYSEDGCIYPATIDSIDFKRETCVVVYLGYGNREEVNLSDLLSP 120 (218)
T ss_pred hhheecceeeeeeecCcccccceecccccccCceEEEEEeecchhhhhHHHhccc
Confidence 4568999999999999999999999998 55566689999999999998877543
|
|
| >PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.055 Score=46.02 Aligned_cols=48 Identities=6% Similarity=-0.029 Sum_probs=41.1
Q ss_pred hcCCCCccccccC-chhhHHHHHHhhhCC-CCccceEEEEe--ccccccccC
Q psy12852 1049 QSDPSRHFYGYAD-KKESQKKILENVFKP-GDKYFLSVIIR--NFSLDVMAP 1096 (1102)
Q Consensus 1049 ~i~~~~~Ff~lGg-dSl~a~~l~~~l~~~-g~~l~~~~l~~--~pti~~laa 1096 (1102)
.+..+.++|+.|+ ||+.++.|+..+++. |++++..++-. ..|+..|++
T Consensus 21 ~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~ 72 (78)
T PRK05087 21 SENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIA 72 (78)
T ss_pred ccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHH
Confidence 5678999999997 999999999999865 99999888876 777777664
|
|
| >KOG2279|consensus | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.089 Score=59.47 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHH
Q psy12852 264 DDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDF 343 (1102)
Q Consensus 264 t~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l 343 (1102)
.-.+.||++.+....+....+..++||+....+.+..++.| ...+..+|.++++|.++ -+..++|-..+... .+
T Consensus 375 nl~~~~~p~lps~al~~L~td~~wL~fpd~i~cev~V~s~i--~a~hlf~pq~tip~F~a--Lrsldqwm~l~y~e--q~ 448 (608)
T KOG2279|consen 375 NLNGSWYPALPSGALENLNTDLYWLDFPDNIDCEVKVLSAI--RADHLFLPQQTIPCFLA--LRSLDQWMELAYDE--QL 448 (608)
T ss_pred cccCccCcccCcccccccCCcceEEEcCCCceEEeeeehhh--cccceeeccccchhhhh--hhhHHHHHHHHhhc--cc
Confidence 33467999999877777677889999999999999999999 55555799999999999 25556888777552 11
Q ss_pred H-hhhce--EEEEEEEeeecCceeEEEEEEcC--CCcccHHHHHHHcCcceee
Q psy12852 344 T-RLFAR--VVSVKLHGEETGGRRYAVELFDL--DEELNINKELVALDLAKFS 391 (1102)
Q Consensus 344 ~-~~~~~--~~~v~~~~~~~~~~~~~v~l~~~--~~~~~i~~~Lv~~gla~~~ 391 (1102)
+ .-..+ ..++.-.....++.-+-+++++. +.+.+|...||.+||++..
T Consensus 449 t~pelP~P~~~t~~sAAp~g~~awpra~lvd~~det~l~I~~~~VdyGY~~~~ 501 (608)
T KOG2279|consen 449 THPELPKPLVATISSAAPTGISAWPRAYLVDTSDETKLDIGLELVDYGYAIEL 501 (608)
T ss_pred CCcCCCcchhhceeeecccCCCCccceEEEeccCcccchhhheeecccccccc
Confidence 1 01113 23334444555555567777773 4467899999999966553
|
|
| >PTZ00171 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.055 Score=52.14 Aligned_cols=69 Identities=4% Similarity=-0.123 Sum_probs=53.9
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.+...+.+..+.++.++. .+.+..+.+|. ++|-|||..+.|+..|+++ |+.++..++-+-.|+.+++++
T Consensus 68 ~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~ 139 (148)
T PTZ00171 68 KEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDY 139 (148)
T ss_pred HHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHH
Confidence 333444444555555554 46799999997 9999999999999999875 999999999888888887653
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.2 Score=50.91 Aligned_cols=76 Identities=22% Similarity=0.258 Sum_probs=64.5
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh--HHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE--YVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 149 ~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e--~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
-+|+.|+...+..+|+.|...|..+||+|..+..-++. -+...+|+.++|+.+.|+++... +.-..+++++++.++
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~-~~~~~l~~df~~tvI 186 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT-ERQLELMKDFKPTVI 186 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH-HHHHHHHHhcCCcEE
Confidence 57999999999999999999999999999888652221 16788999999999999998443 666778899999998
|
|
| >cd00175 SNc Staphylococcal nuclease homologues | Back alignment and domain information |
|---|
Probab=87.30 E-value=2.9 Score=39.63 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=50.4
Q ss_pred ceEEEEeeceecC------------CCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHH
Q psy12852 316 QAIECYLAGVEPL------------EGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELV 383 (1102)
Q Consensus 316 qA~~c~L~~v~p~------------~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv 383 (1102)
+.+..+|+||..+ ...|..+|.++++++ +..+.+.+........+. +...++.. +..+||..|+
T Consensus 16 ~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~--l~~~~V~i~~~~~d~~gr-~la~v~~~-~~~~v~~~Lv 91 (129)
T cd00175 16 PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKL--LLGKKVQVEVDSKDRYGR-TLGTVYLN-GGENIAEELV 91 (129)
T ss_pred CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHH--hCCCEEEEEEccCCCCCC-EEEEEEeC-CCCcHHHHHH
Confidence 3455666666533 226889999999998 455777777665333333 44444442 2479999999
Q ss_pred HcCcceeecccc
Q psy12852 384 ALDLAKFSEDAN 395 (1102)
Q Consensus 384 ~~gla~~~~~~~ 395 (1102)
+.|+|.......
T Consensus 92 ~~G~A~~~~~~~ 103 (129)
T cd00175 92 KEGLARVYRYYP 103 (129)
T ss_pred hcCCEEEEEECC
Confidence 999999875544
|
SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds. |
| >PRK08172 putative acyl carrier protein IacP; Validated | Back alignment and domain information |
|---|
Probab=85.78 E-value=0.1 Score=44.96 Aligned_cols=59 Identities=5% Similarity=-0.088 Sum_probs=47.9
Q ss_pred CCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1038 DQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1038 ~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+.+..++. .+.+..+.+| =++|-|||..+.|+..|.+. |+.++-.++.+-.|+.++++
T Consensus 11 ~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~ 72 (82)
T PRK08172 11 KVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICR 72 (82)
T ss_pred HHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHH
Confidence 344455554 4689999999 66999999999999999765 99999999888888877654
|
|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
Probab=84.86 E-value=2.4 Score=39.75 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=49.6
Q ss_pred CceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeec
Q psy12852 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAG 324 (1102)
Q Consensus 256 G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~ 324 (1102)
|+-++|+...|+.||||.|.+..+.+.+.|.| |.|....|+..++-++ .... .-|-+.=-+-|+-
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~~~~~~lV~f-~~~~~~~v~~~~iI~~--~~~~-~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCVSSGQFLVEF-DDGDTQEVPISDIIAL--SDAM-RHSLQVGDKVLAP 65 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEccCCCEEEEEE-CCCCEEEeChHHeEEc--cCcc-cCcCCCCCEEEEe
Confidence 56789999999999999999988777777888 8899999999999888 4332 3344444445554
|
|
| >KOG3026|consensus | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.6 Score=44.25 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=53.9
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccCC----ccccccCCCcce
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPIH----RPQLISNLPFQA 317 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l~----~~~~l~~lP~qA 317 (1102)
+..|+-|.+.|++|+.||-|.|..+.. ...+.|.|--||+...++..++|... ....+.+.|.++
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~s~~~a~~t~~a~lr~~e~~~s~~~~~~n~P~~~ 160 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFASYGTAPSTYAARLRSPEEKSSAAYTANNKPIQN 160 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEEeeccccccccHhhccCcchhhhhhcccCCCcchh
Confidence 578999999999999999999999975 45678999999999999999999773 123345567776
|
|
| >KOG2452|consensus | Back alignment and domain information |
|---|
Probab=82.98 E-value=0.61 Score=51.43 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=52.7
Q ss_pred HhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC--CCccceEEEEeccccccc
Q psy12852 1033 EKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP--GDKYFLSVIIRNFSLDVM 1094 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~--g~~l~~~~l~~~pti~~l 1094 (1102)
.+.+..+|..+|...-++..+.+||+-|..|...+||+.+++.. |..+.-.++|..||+.+.
T Consensus 324 ~~~~~~iw~~il~kv~~v~~~tdff~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~ 387 (881)
T KOG2452|consen 324 AEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDF 387 (881)
T ss_pred HHHHHHHHHHhcchheeecccchHhhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhH
Confidence 44566777777775567888999999999999999999999875 689999999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1102 | ||||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-22 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-15 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-15 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-15 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 2e-14 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 1e-13 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 1e-13 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-13 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 1e-13 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 1e-13 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-13 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 3e-13 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 2e-12 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-12 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 5e-12 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 6e-12 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 6e-12 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 6e-12 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 9e-12 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-11 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-11 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 5e-11 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 5e-11 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 6e-11 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 7e-11 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-10 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 1e-09 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-09 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 5e-09 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 1e-08 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 4e-08 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 4e-08 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-06 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-06 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-06 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-06 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 1e-06 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 1e-06 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 2e-06 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-06 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 4e-06 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 6e-06 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 4e-05 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 9e-05 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 1e-04 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 1e-04 | ||
| 4b9w_A | 201 | Structure Of Extended Tudor Domain Td3 From Mouse T | 3e-04 | ||
| 4b9x_A | 226 | Structure Of Extended Tudor Domain Td3 From Mouse T | 3e-04 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 8e-04 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 8e-04 |
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In Complex With Mili Peptide Containing Dimethylarginine 45. Length = 201 | Back alignment and structure |
|
| >pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 Length = 226 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 7e-52
Identities = 95/524 (18%), Positives = 185/524 (35%), Gaps = 73/524 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E + + A L+ G + + L+ + +LGA GV+ + NT L
Sbjct: 52 GELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPAD 111
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL-----DETKPDLPNLSDLMKTT 623
V+ ++ ++A+I S + ES L+ + P +L+
Sbjct: 112 YVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDA- 170
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG--QVGKHLLSLGSGDVI 681
A+ + D ++Y+SG+TG PK + L K +L + DV+
Sbjct: 171 -AAPAAKAAATGCDDIAFWLYSSGSTGKPKGT-VHTHANLYWTAELYAKPILGIAENDVV 228
Query: 682 YNCLPMYHSAGGLIGTIPALILG-SSIAIRTKFSASNYFRDCAKYKCNAGIYIGE--MCR 738
++ ++ + G G L +G ++I + + +A F +++ ++ G +
Sbjct: 229 FSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT--VFYGVPTLYA 286
Query: 739 YLLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN-- 794
+L S A + G + +I +F F I++ G+TE ++
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLHIFLSNR 345
Query: 795 -MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGEI 852
G G P + + + D + D + G L I+ P
Sbjct: 346 AGAVEYGTTG-----RPVPGYEIELR--D-EAGHAVPDGEVGDLYIKG----PSA----- 388
Query: 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
Y + +E + F + SGD G + R+ D +
Sbjct: 389 --------AVMYWNNREKSRA----TFLGE--WIRSGDKYCRLPNGCYVYAGRSDDMLKV 434
Query: 913 KGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAGMI--AIVDTSNQVDLKL 965
G+ VS +EVE + E V GV G +V ++
Sbjct: 435 SGQYVSPVEVEMVL-----VQHDAVLEAAVVGVD----HGGLVKTRAFVVLKREFAPSEI 485
Query: 966 LVQGLDA----NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L + L A L + P + + + T T KI++ +L+ +
Sbjct: 486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-16
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 126 LVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRP 185
+ + + R Y + T +++E + + A L+ G + + L+ +
Sbjct: 25 FAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTV 84
Query: 186 EYVGVWLGAAKLGVI 200
+LGA GV+
Sbjct: 85 ALPVAFLGALYAGVV 99
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-49
Identities = 114/510 (22%), Positives = 191/510 (37%), Gaps = 63/510 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + ++A +L G + GD +A E E + ++L + G + +NT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + I+ + K ++ I AI + L + + L + + ASE
Sbjct: 92 LDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAA-----GASEA 146
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ D +YTSGTTG K A++ + + DV+ + LP+Y
Sbjct: 147 FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIY 206
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG---IYIGEMCRYLLASKE 745
H+ G + + L S+ KF A+ G Y R L + +
Sbjct: 207 HTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARATVLMGVPTFYT----RLLQSPRL 262
Query: 746 SEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE--- 799
++ H +++ G + D ++ + ++E YG TE N N N + +
Sbjct: 263 TKETTGH--MRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETNMNTSNPYDGDRVP 319
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
GAVG + DP+TG + G IG I+ P+
Sbjct: 320 GAVG-----PALPGVSARVT-----------DPETGKEL-----PRGD-IGMIEVKGPNV 357
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY E K F+ D +F++GD+ +DE GY++ R D G NV
Sbjct: 358 -FKGYWRMPEKTKS----EFRD-DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYP 411
Query: 920 MEVEATISKYLPYT-----EFTVYGVKVGDLD-GRAGMIAIV-DTSNQVDLKLLVQGLDA 972
E+E+ I E V GV D G +V D +D ++ GLD
Sbjct: 412 KEIESEI-----DAMPGVVESAVIGVP--HADFGEGVTAVVVRDKGATIDEAQVLHGLDG 464
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L + P V + + K++K L
Sbjct: 465 QLAKFKMPKKVIFVDDLPRNTMGKVQKNVL 494
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-12
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 136 RRPNAPCYYFQD-ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
P+ + + ++ + ++A +L G + GD +A E E + ++L
Sbjct: 14 DDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLAT 73
Query: 195 AKLGVI 200
+ G +
Sbjct: 74 VRAGGV 79
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 1e-45
Identities = 91/449 (20%), Positives = 156/449 (34%), Gaps = 58/449 (12%)
Query: 492 NARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
NA D A V + + ++A L DG GD +A++ +N E + +
Sbjct: 15 NAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLD 607
A +G I +N L + + ++ Y + + S+ VK + +
Sbjct: 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIG 134
Query: 608 ETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ 667
+ DL TP S + +D + I+T+ G P+ A++ +L+
Sbjct: 135 DGSGPFAPFKDLASDTPFSAPEFGA----ADGFVIIHTAAVGGRPRGALISQGNLLIAQS 190
Query: 668 VGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727
L DV LP++H GL + G + I KF + RD +K
Sbjct: 191 SLVDAWRLTEADVNLGMLPLFHVT-GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
Query: 728 NAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787
M +L + A + ++ + + +F T +G +E
Sbjct: 250 TVMAEFAPMLGNILDQ-AAPAQLAS--LRAVTGLDTPETIERFEATCPNATFWATFGQSE 306
Query: 788 GNANLVNMDNTE--GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQP 845
+ + + G P F VA++ D + P
Sbjct: 307 TSGLSTFAPYRDRPKSAG-----RPLFWRTVAVV-----------DAEDRPL------PP 344
Query: 846 GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905
G +GEI P+ F GY + + + F+ G + +GDM D GYL++ R
Sbjct: 345 GE-VGEIVLRGPT-VFKGYWNNAAATQH----AFRNG--WHHTGDMGRFDADGYLFYAGR 396
Query: 906 --------TGDTYRWKGENVSTMEVEATI 926
TG GENV EVE +
Sbjct: 397 APEKELIKTG------GENVYPAEVEGAL 419
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 4e-16
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
M+ + TL ++++ P+ + T + + ++A L DG GD +A
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 179 LMCENRPEYVGVWLGAAKLGVI 200
++ +N E + + A +G I
Sbjct: 61 ILSQNCSEMIELIGAVALIGAI 82
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 5e-45
Identities = 91/436 (20%), Positives = 157/436 (36%), Gaps = 61/436 (13%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
++ E S + A +L G ++GD +A++ PE+ V LG + G+I +K
Sbjct: 77 RELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKST 136
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPA 625
+++ + K+KAI+ E++ + P +++ LL +++ N L+ A
Sbjct: 137 DILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE--A 194
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
S + ++ +TSGT+GLPK A + L ++ L + D+++
Sbjct: 195 STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI- 253
Query: 686 PMYHS----AGGLIGTI-PALILGSSIAI--RTKFSASNYFRDCAKYKCNAGIYIGEMC- 737
S ++ ++ LG+ + KF + + Y I M
Sbjct: 254 ----SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYP------IKSMMG 303
Query: 738 -----RYLLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGN- 789
R LL S + H + + VG + + + + + I E YG TE
Sbjct: 304 APIVYRMLLQQDLSSYKFPH-LQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTETGL 361
Query: 790 --ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
M G +G + V II D K G
Sbjct: 362 TCMVSKTMKIKPGYMG-----TAASCYDVQII-----------DDKGN---VLPPGTEGD 402
Query: 848 IIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
I +K P F GY D + + ++L GD + DE GY F R
Sbjct: 403 IGIRVKPIRPIGIFSGYVDNPDKTAA----NIRGD--FWLLGDRGIKDEDGYFQFMGRAD 456
Query: 908 DTYRWKGENVSTMEVE 923
D G + EVE
Sbjct: 457 DIINSSGYRIGPSEVE 472
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 136 RRPNAPCYYFQDE-----TWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVG 189
+RP +P ++ + W +++ E S + A +L G ++GD +A++ PE+
Sbjct: 55 KRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL 114
Query: 190 VWLGAAKLGVI 200
V LG + G+I
Sbjct: 115 VILGCIRAGLI 125
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-42
Identities = 102/446 (22%), Positives = 171/446 (38%), Gaps = 77/446 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A ++ + ++A L G ++GDV+ L + PE+V +LGA+ G I N
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L ++K +I A YY +++ VK+ +D + S+L +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDGCLHFSELTQADENE-- 169
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + D + Y+SGTTGLPK ++ + V L S DVI
Sbjct: 170 APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITS--VAQQVDGDNPNLYFHSEDVIL 227
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-----IYIGEMC 737
LPM+H + L +G+ I I KF + KYK + + + +
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS-IA 286
Query: 738 RYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE----GNA 790
+ K D S ++MI G + ++ +F + + YG TE
Sbjct: 287 KSPDLDKH---DLSS--LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAM 341
Query: 791 NLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPG 846
L GA G T++ E + I DP+TG + NQP
Sbjct: 342 CLAFAKEPFDIKPGACG---TVVRN------------AEMK-IVDPETGASL--PRNQP- 382
Query: 847 MIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
GEI K GY + E+ + ++ + + +GD+ +D+
Sbjct: 383 ---GEICIRGDQIMK---------GYLNDPEATSRTIDK-----EGWLHTGDIGYIDDDD 425
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEA 924
L+ DR + ++KG V+ E+EA
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEA 451
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-12
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYY--FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179
N L S +++ + PC + +T ++ + ++A L G ++GDV+ L
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIML 79
Query: 180 MCENRPEYVGVWLGAAKLGVI 200
+ PE+V +LGA+ G I
Sbjct: 80 FLPSSPEFVLAFLGASHRGAI 100
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 4e-42
Identities = 110/535 (20%), Positives = 177/535 (33%), Gaps = 78/535 (14%)
Query: 490 ASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
+ + D A A++ + A +A+ E
Sbjct: 30 PAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPAMETGVA 84
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
+ A GV + +N + L H +S ++ PD
Sbjct: 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP--------------PDA----- 125
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666
E P L L + A P + D L +YTSGTTG PK A++P +
Sbjct: 126 -ELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTL 184
Query: 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
DV+ LP++H G ++G + L G S+ +FS R+
Sbjct: 185 DALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-- 242
Query: 727 CNAGIYIG------EMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQ 777
A + G + L A E + +++ G + +
Sbjct: 243 -GATMLFGVPTMYHRIAETLPADPELAKALAG--ARLLVSGSAALPVHDHERIAAATGR- 298
Query: 778 TIIEFYGATEGNANLVNMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKT 834
+IE YG TE N + E G VG+ P+ ++ LV +
Sbjct: 299 RVIERYGMTETLMNTSVRADGEPRAGTVGV----------PLPGVELRLV------EEDG 342
Query: 835 GLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVM 894
G I +++ P+ F Y ++ ++ F D +F +GDM V
Sbjct: 343 TPIAALDGESVGEI--QVRG--PNL-FTEYLNRPDATAA----AFTE-DGFFRTGDMAVR 392
Query: 895 DELGYLYFKDRTG-DTYRWKGENVSTMEVEATISKYLPY-TEFTVYGVKVGDLDGRAGMI 952
D GY+ R D + G + E+E + + P E V G DL G +
Sbjct: 393 DPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLE-HPEVREAAVTGEPDPDL-GERIVA 450
Query: 953 AIV--DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
IV D + L L + A L + RP VR + A+ KI K L +
Sbjct: 451 WIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 118 RMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL 177
R + ++ + + P F + + T ++ + A +
Sbjct: 17 RGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRV 71
Query: 178 ALMCENRPEYVGVWLGAAKLGVI 200
A+ E + A GV
Sbjct: 72 AVWATPAMETGVAVVAALLAGVA 94
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-41
Identities = 80/425 (18%), Positives = 144/425 (33%), Gaps = 49/425 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ +A L DG + +A++ N + V L +LG + AL+N LK
Sbjct: 33 AELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAE 92
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L I + A +++ +AI +S ++ L + D S
Sbjct: 93 LAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLVRDGEPYS-------YGPP 144
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHL-LSLGSGDVIYNCLP 686
+ + YTSGTTGLPKAAI+P + + L G +V+ +P
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMP 204
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA--G---IYIGEMCRYLL 741
+YH G + AL L + + +F + + + + + +
Sbjct: 205 LYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA-LAAAAA 263
Query: 742 ASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT 798
+ ++ + M + + + YG TE +L
Sbjct: 264 HAGS-SLKLDS--LRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMRQPK 319
Query: 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
G P F V I+ G+ G GE+ +
Sbjct: 320 TGTEM-----APGFFSEVRIV-----------RIGGGVDEIVA---NGE-EGELIVAASD 359
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
F GY ++ ++ + L+ D ++ + D+ V G + R D GEN+
Sbjct: 360 SAFVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIH 413
Query: 919 TMEVE 923
E+E
Sbjct: 414 PSEIE 418
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-12
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 124 TTLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
T+ +++ R P+ + T ++ +A L DG + +A++
Sbjct: 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVA 61
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N + V L +LG +
Sbjct: 62 PNSADVVIAILALHRLGAV 80
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 7e-41
Identities = 90/450 (20%), Positives = 172/450 (38%), Gaps = 81/450 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S + + LQ+ G +AL EN E+ + +GV A N +
Sbjct: 56 AEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRE 115
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP---NLSDLMKTTPA 625
LVHS+ K + S ++ +++++ +K ++ ++K D L +K
Sbjct: 116 LVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTP 175
Query: 626 SEVKPSE----PLQTSDSLLYI-YTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLS 674
+ S + + + I +SG+TGLPK I+ F G
Sbjct: 176 PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ--- 232
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG---- 730
+ G + +P +H G+ T+ LI G + + TKF + + YKC +
Sbjct: 233 VSPGTAVLTVVPFHHGF-GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP 291
Query: 731 -IYIGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGAT 786
++ + + L +K D S+ + I G + ++ +RF++ + + YG T
Sbjct: 292 TLFAI-LNKSELLNKY---DLSN--LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLT 345
Query: 787 E----GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842
E D+ GA G ++P + + + D T +
Sbjct: 346 ETTSAIIITPEG-DDKPGASG---KVVPL------------FKAK-VIDLDTKKSL--GP 386
Query: 843 NQPGMIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVM 894
N+ GE+ K GY + E+ K++++ + + +GD+
Sbjct: 387 NRR----GEVCVKGPMLMK---------GYVNNPEATKELID-----EEGWLHTGDIGYY 428
Query: 895 DELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
DE + + DR ++KG V E+E+
Sbjct: 429 DEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
+ ++ +K ++R F + ++ + E S + + LQ+ G +A
Sbjct: 22 EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 179 LMCENRPEYVGVWLGAAKLGVI 200
L EN E+ + +GV
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVG 103
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 3e-40
Identities = 90/450 (20%), Positives = 165/450 (36%), Gaps = 81/450 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 54 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETKPDLP------NLSDLMK 621
L++S++ + + VS +I +++ +P K+ ++D ++ +
Sbjct: 114 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 173
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLS 674
E ++ I +SG+TGLPK F G
Sbjct: 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ--- 230
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG---- 730
+ I + +P +H G+ T+ LI G + + +F + R YK +
Sbjct: 231 IIPDTAILSVVPFHHGF-GMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 289
Query: 731 -IYIGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGAT 786
++ + L K D S+ + I G + ++ KRFH+ I + YG T
Sbjct: 290 TLFSF-FAKSTLIDKY---DLSN--LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 787 E----GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842
E D+ GAVG ++P E + + D TG +
Sbjct: 344 ETTSAILITPEG-DDKPGAVG---KVVPF------------FEAK-VVDLDTGKTL--GV 384
Query: 843 NQPGMIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVM 894
NQ GE+ GY + E+ +++ D + SGD+
Sbjct: 385 NQR----GELCVRGPMIMS---------GYVNNPEATNALIDK-----DGWLHSGDIAYW 426
Query: 895 DELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
DE + + DR ++KG V+ E+E+
Sbjct: 427 DEDEHFFIVDRLKSLIKYKGYQVAPAELES 456
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 4e-11
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 123 NTTLVSEFKKSVKR---RPNAPCY--YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL 177
+ T + K++KR P + + T + E S ++A ++ G +
Sbjct: 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 78
Query: 178 ALMCENRPEYVGVWLGAAKLGVI 200
+ EN ++ LGA +GV
Sbjct: 79 VVCSENSLQFFMPVLGALFIGVA 101
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 6e-40
Identities = 101/531 (19%), Positives = 207/531 (38%), Gaps = 81/531 (15%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+I E + K+A + G +KG+ + + N +YV ++ IN K
Sbjct: 56 LEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFE 115
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H ++ ++ ++V ++ Y + + E ++F++ ++ +LS++M + +
Sbjct: 116 LEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG---GEVNSLSEVMDSGSE-DF 171
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ + D L YT GTTG+PK ++ +F + L D I C+PM+
Sbjct: 172 ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMF 231
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-----IYIGEMCRYLLAS 743
HSA + +G+ + F+ + KYK L+ +
Sbjct: 232 HSA-EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV-----LVNT 285
Query: 744 KE---SEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQ------TIIEFYGATE---- 787
E D+S+ +K+ G + + K +K + + +G TE
Sbjct: 286 LESSNKTYDWSY--LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPM 343
Query: 788 GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
N + G+ + +E + + + G + + G
Sbjct: 344 VTTNPPLRLDKSTTQGV---PMSD------------IELK-VISLEDGREL--GVGESGE 385
Query: 848 IIGEIK--QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905
I+ I+ F GY +++ ++ K G K+F +GD+ +DE G+L+F+DR
Sbjct: 386 IV--IRGPNI-----FKGYWKREKENQECWWYDEK-GRKFFRTGDVGFIDEEGFLHFQDR 437
Query: 906 TGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG---MIAIV-- 955
+ ++KG ++ E+EA + + V G D AG IV
Sbjct: 438 VKEVIKYKGYTIAPFELEALL-----MKHEAVMDVAVIGKP----DEEAGEVPKAFIVLK 488
Query: 956 -DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
+ +VD + +++ + + Y R V ++ + T + K+ + L+ +
Sbjct: 489 PEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREK 539
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 8e-13
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQD--------ETWTIKQIDEYSNKIARILQDDGFKKG 174
+L + ++ + E+ +I E + K+A + G +KG
Sbjct: 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKG 77
Query: 175 DVLALMCENRPEYVGVWLGAAKLGVI 200
+ + + N +YV ++
Sbjct: 78 EHVGVCIPNSIDYVMTIYALWRVAAT 103
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 2e-38
Identities = 91/528 (17%), Positives = 179/528 (33%), Gaps = 86/528 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D S +A L + G KGD + N E+ V+ K GV+ + ++
Sbjct: 59 IELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYE 118
Query: 569 LVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
L I ++ K +I S I+++ + ++ L+ + L D ++ T
Sbjct: 119 LNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIE-T 177
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
PA + + + G+TG PK + + + L S +
Sbjct: 178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLC 237
Query: 684 CLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA-----GIYIGEMC 737
LP H+ G + L G + + N F +++ N I
Sbjct: 238 ALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMW-- 295
Query: 738 RYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796
L + + + +++++ G + + + + + + +G EG N +D
Sbjct: 296 --LEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KLQQVFGMAEGLVNYTRLD 352
Query: 797 NTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG---------LCIRCKYN 843
+++ G + E + I D + L R
Sbjct: 353 DSDEQIFTTQG-------RPISSD-------DEIK-IVDEQYREVPEGEIGMLATR---- 393
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
G P F GY E + VF D Y+ SGD++ G L
Sbjct: 394 --G----------PY-TFCGYYQSPEHNSQ----VFDE-DNYYYSGDLVQRTPDGNLRVV 435
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG---MIAIV 955
R D GE +++ E+E I + + D + G IV
Sbjct: 436 GRIKDQINRGGEKIASEEIEKLI-----LLHPEVMHAALVAIV----DEQFGEKSCAFIV 486
Query: 956 DTSNQVDLKLLVQGL-DANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ ++ +L + L + + Y P +++++++ +T K+ K QL
Sbjct: 487 SRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQL 534
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ L V+ P++ + + ++D S +A L + G KGD +
Sbjct: 28 IDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQL 87
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ V+ K GV+
Sbjct: 88 PNVAEFYIVFFALLKAGVV 106
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-38
Identities = 96/518 (18%), Positives = 175/518 (33%), Gaps = 70/518 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D ++++A Q G ++ D + + N E+ V +LG + + +
Sbjct: 54 RELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSE 113
Query: 569 LVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT- 622
+ + ++ A I+ Y ++ +P +K ++ + L DL
Sbjct: 114 ITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP 173
Query: 623 TPASEVKPSEP--LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
EVK S+ LQ + G+TGL K + + + + L V
Sbjct: 174 VKLPEVKSSDVAFLQ--------LSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV 225
Query: 681 IYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA-----GIYIG 734
LPM H+ G + L G + + S + F + K + +
Sbjct: 226 YLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMV 285
Query: 735 EMCRYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793
+ A+ D S QV+++ G + + F T+ + +G EG LV
Sbjct: 286 W----MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFGMAEG---LV 337
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
N + II + P E++ + D +PG G +
Sbjct: 338 NYTRLDDPEEIIVNTQGKPMSP-------YDESR-VWDDHDRDV------KPG-ETGHLL 382
Query: 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
P GY +E F D ++ +GD++ + GY+ + R D
Sbjct: 383 TRGPY-TIRGYYKAEEHNAA----SFTE-DGFYRTGDIVRLTRDGYIVVEGRAKDQINRG 436
Query: 914 GENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG---MIAIVDTSNQVDLKL 965
GE V+ EVE + + + + D G + I+
Sbjct: 437 GEKVAAEEVENHL-----LAHPAVHDAAMVSMP----DQFLGERSCVFIIPRDEAPKAAE 487
Query: 966 LVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L L L AY P V +++ TG K+ K L
Sbjct: 488 LKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 12/79 (15%), Positives = 31/79 (39%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
T + + + + W+ +++D ++++A Q G ++ D + +
Sbjct: 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ V +LG +
Sbjct: 83 PNIKEFFEVIFALFRLGAL 101
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 86/521 (16%), Positives = 161/521 (30%), Gaps = 78/521 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ ++ +A+ L + + L +N + + + + A+INT L
Sbjct: 30 QNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE 86
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIR--ESIPDVKLFLLDETKPDLPNLSDLMKT---- 622
+ + + ++ + I + I + I + D +
Sbjct: 87 MTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETV 146
Query: 623 --TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
+ + D ++TSGTTG KA K L
Sbjct: 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTN 206
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG--EMCR 738
+ LP+YH GL + A+I G ++ I KF+A + +
Sbjct: 207 WLSVLPIYHI-SGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERIT--HISLVPQTLN 263
Query: 739 YLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE--GNANLVNMD 796
+L+ Y+ Q + + G + + ++ I +G TE +
Sbjct: 264 WLMQQGL-HEPYNLQKILLGGAKLSATMIETALQYNL--PIYNSFGMTETCSQFLTATPE 320
Query: 797 NTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
VG +P+ V I +P G ++ IK
Sbjct: 321 MLHARPDTVG-----MPSANVDVKIK-----------NPNKE--------GHGELM--IK 354
Query: 854 QSDPSRH-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
+ GY + F+ G YF +GD+ +D GY+ DR D
Sbjct: 355 ----GANVMNGYLYPTDLTG-----TFENG--YFNTGDIAEIDHEGYVMIYDRRKDLIIS 403
Query: 913 KGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAGMI--AIVDTSNQVDLKL 965
GEN+ ++E + G D G + + + +
Sbjct: 404 GGENIYPYQIETVA-----KQFPGISDAVCVGHP----DDTWGQVPKLYFVSESDISKAQ 454
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006
L+ L +L Y P + + T T K+++ +L EG
Sbjct: 455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREG 495
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 8/76 (10%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
+L K ++ + E++T + + ++ +A+ L + + L +N
Sbjct: 2 SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNS 58
Query: 185 PEYVGVWLGAAKLGVI 200
+ + + +
Sbjct: 59 IQSIILIHACWLANIE 74
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 2e-37
Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 18/285 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ++ +N+ A +L G KGD +AL+ N E+ ++ GAAKLG ++ INT L
Sbjct: 47 AQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPE 106
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ +S SK +I A P I+AIR +L++ +++ A E
Sbjct: 107 VSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVT---DWIGADSLAERLRSAAADE- 162
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
P+ D+L +YTSGTTG PK + + V + + D + LPM+
Sbjct: 163 -PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMF 221
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG--EMCRYLLASKE- 745
H A L I + + G ++ +F A+ + + + I + ++ E
Sbjct: 222 HVA-ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVC--IGGAVPAILNFMRQVPEF 278
Query: 746 SEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE 787
+E D + G M + K +++ +++ Y TE
Sbjct: 279 AELDAPD--FRYFITGGAPMPEAL-IKIYAAKNIE-VVQGYALTE 319
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-13
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 124 TTLVSEFKKSVKRRPNAPC--YYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ ++ P D T Q++ +N+ A +L G KGD +AL+
Sbjct: 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLM 75
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ ++ GAAKLG +
Sbjct: 76 PNSVEFCCLFYGAAKLGAV 94
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 886 FLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGV 940
F +GD+ +D+ GYLY KDR D GENV E+E+ I E V G+
Sbjct: 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVI-----IGVPGVSEVAVIGL 446
Query: 941 KVGDLD---GRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997
D G +V N+V + +V+ L Y P V +AI T KI
Sbjct: 447 P----DEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKI 502
Query: 998 KKIQL 1002
K L
Sbjct: 503 LKTVL 507
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 6e-37
Identities = 84/527 (15%), Positives = 170/527 (32%), Gaps = 85/527 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++++ ++ +A L+ G K G+ + N E + KLGV L + ++
Sbjct: 54 RELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSE 113
Query: 569 LVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
L S ++ +I + +++ L NL D +
Sbjct: 114 LNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND-SGEHNLQDAINH- 171
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
+E + P + + + GTTG PK + + +
Sbjct: 172 -PAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLC 230
Query: 684 CLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA-----GIYIGEMC 737
+P H+ G++ + G ++ + SA+ F K++ N +
Sbjct: 231 AIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290
Query: 738 RYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796
L ES A + +++++ G + + A+ Q + + +G EG N +D
Sbjct: 291 --ALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGMAEGLVNYTRLD 347
Query: 797 NTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPK--------TG-LCIRCKYN 843
++ G P E + D + G L R
Sbjct: 348 DSAEKIIHTQG-----YPMCPD---------DEVW-VADAEGNPLPQGEVGRLMTR---- 388
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
G P F GY + F + ++ SGD++ +D GY+ +
Sbjct: 389 --G----------PY-TFRGYYKSPQHNAS----AFDA-NGFYCSGDLISIDPEGYITVQ 430
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG--MIAIVD 956
R D GE ++ E+E + + ++ D G A +
Sbjct: 431 GREKDQINRGGEKIAAEEIENLL-----LRHPAVIYAALVSME----DELMGEKSCAYLV 481
Query: 957 TSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ + + L + + P V + ++ +T K+ K QL
Sbjct: 482 VKEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQL 528
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-11
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 136 RRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195
++ + + +++++ ++ +A L+ G K G+ + N E +
Sbjct: 37 AASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALL 96
Query: 196 KLGVI 200
KLGV
Sbjct: 97 KLGVA 101
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 8e-37
Identities = 92/450 (20%), Positives = 167/450 (37%), Gaps = 83/450 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ YS+K A G KGD + L ++R ++ LG KLG I+ LK +
Sbjct: 90 KDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRD 149
Query: 569 LVHSISTVKSKAIIVSA--LYYPEIEAIRESIPDVKLFLL---DETKPDLPNLSDLMKTT 623
+V+ I K I+ A +++ D+ L + + ++ +
Sbjct: 150 IVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209
Query: 624 PASEVKPSEPLQTS--DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDV 680
+P+ + T D L ++SGT G PK + LG + K+ ++ +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEH-DNTYPLGHILTAKYWQNVEDDGL 268
Query: 681 IYNCLPMYHS----AGGLIGTI-PALILGSSIAI--RTKFSASNYFRDCAKYKCNAGIYI 733
Y + + G + I G ++ + +F A N +KY
Sbjct: 269 HYTV-----ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT---- 319
Query: 734 GEMC------RYLLASKESEADYSHQVVKMIGVGMRG-----DIWAKFVKRFHVQTIIEF 782
C R+L+ S ++S +K V G +++ +F++ + ++E
Sbjct: 320 --FCAPPTIYRFLIKEDLSHYNFST--LKYAVVA--GEPLNPEVFNRFLEFTGI-KLMEG 372
Query: 783 YGATEGN---ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCI 838
+G TE A M+ G++G PT + + ++ D + + + G + I
Sbjct: 373 FGQTETVVTIATFPWMEPKPGSIG-----KPTPGYKIELM--D-RDGRLCEVGEEGEIVI 424
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
+P + F Y E ++ + G Y+ +GDM MDE G
Sbjct: 425 NTMEGKPVGL------------FVHYGKDPERTEE----TWHDG--YYHTGDMAWMDEDG 466
Query: 899 YLYFKDRTGDT-----YRWKGENVSTMEVE 923
YL+F R D Y+ V EVE
Sbjct: 467 YLWFVGRADDIIKTSGYK-----VGPFEVE 491
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 5e-09
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 134 VKRRPNAPCYYFQDE-----TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188
+ P + D+ +T K + YS+K A G KGD + L ++R ++
Sbjct: 66 ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125
Query: 189 GVWLGAAKLGVI 200
LG KLG I
Sbjct: 126 YCMLGLHKLGAI 137
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 8e-37
Identities = 101/451 (22%), Positives = 172/451 (38%), Gaps = 79/451 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ + S +IA G + DV+ L+ N PE+V +L A+ G + N
Sbjct: 92 SDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAE 151
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP----NLSDLMKT-T 623
+ +K II A Y +I+ ++ V + + D +P ++L ++ T
Sbjct: 152 IAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTT 211
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGS 677
ASEV S + D + Y+SGTTGLPK ++ + V L S
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTS--VAQQVDGENPNLYFHS 269
Query: 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-----IY 732
DVI LPM+H + L +G++I I KF + + K I
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329
Query: 733 IGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE-- 787
+ + + K D S ++++ G + ++ +F + + YG TE
Sbjct: 330 LA-IAKSSETEKY---DLSS--IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383
Query: 788 --GNANLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841
+L GA G T++ E + I DP TG +
Sbjct: 384 PVLAMSLGFAKEPFPVKSGACG---TVVRN------------AEMK-IVDPDTGDSL--S 425
Query: 842 YNQPGMIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMV 893
NQP GEI K GY + + + ++ D + +GD+ +
Sbjct: 426 RNQP----GEICIRGHQIMK---------GYLNNPAATAETIDK-----DGWLHTGDIGL 467
Query: 894 MDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
+D+ L+ DR + ++KG V+ E+EA
Sbjct: 468 IDDDDELFIVDRLKELIKYKGFQVAPAELEA 498
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYY--FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179
+ +L +++ PC +T + S +IA G + DV+ L
Sbjct: 59 NHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVML 118
Query: 180 MCENRPEYVGVWLGAAKLGVI 200
+ N PE+V +L A+ G
Sbjct: 119 LLPNCPEFVLSFLAASFRGAT 139
|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 9e-22
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+L KL + + D++ G C+A+ D Y R +V + +
Sbjct: 387 TQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWY-RARVEKVESPAKIHVFY 445
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGV-WSQAAYDFLDDFT-- 344
+DY +++ +P L + LP QA E A ++ + A D +
Sbjct: 446 IDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQN 505
Query: 345 -RLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLA 388
+ V + V L D + ++ LV L
Sbjct: 506 TQCLLNVEHLS-------AGCPHVTLQFADSKGDVGLGLVKEGLV 543
|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 6e-20
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 6/163 (3%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+ KL + + D++ G C+A+ D Y R +V + +
Sbjct: 41 TQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWY-RARVEKVESPAKIHVFY 99
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVE-PLEGVWSQAAYDFLDDFTRL 346
+DY +++ +P L + LP QA E A ++ P + A D + +
Sbjct: 100 IDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQN 159
Query: 347 FARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAK 389
+++V E V L D + ++ LV L
Sbjct: 160 TQCLLNV----EHLSAGCPHVTLQFADSKGDVGLGLVKEGLVM 198
|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 3e-18
Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 25/170 (14%)
Query: 218 VHFKGIILELHRLMK-LNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTD 276
V + + L ++ L + G LC+A+ + + R Q+
Sbjct: 19 VQMESDVPALEQMTDKLLDA-------EQDLPAFSDLKEGALCVAQFPEDEVFYRAQIRK 71
Query: 277 TSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAA 336
D + F+D+ + + P+ ++ + C L + A
Sbjct: 72 VLDDGKCEVHFIDFGNNAVTQ--QFRQL--PEELAKPARYSRHCELDASTISK--CDAAL 125
Query: 337 YDFLDDFT---RLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELV 383
D +++ K G + V LF + NI+++L
Sbjct: 126 LQSFIDTRFSETFQVEILATKGTG------THVVRLF--YQSKNISEKLQ 167
|
| >2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 3e-17
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 226 ELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMI 285
+L KL E+ + H G + A + R +V T ++ +
Sbjct: 8 RSLQLDKLVNEMTQHYENSVPE--DLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDL 65
Query: 286 LFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEG 330
FVD+ D + P +DL + +S LPFQAIEC LA +
Sbjct: 66 YFVDFGDNGDCPLKDLRALR-SDFLS-LPFQAIECSLARIASGPS 108
|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 2e-16
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 12/205 (5%)
Query: 223 IILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSEL 282
+ +L L ++ D G L A+ + + R +V S
Sbjct: 22 SVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQGSN- 80
Query: 283 AMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVE-PLEGVWSQAAYDFLD 341
A +L++DY +K+ +P L + S+ A E LA V P + + A
Sbjct: 81 ATVLYIDYGNKETLPTNRLAALPPA--FSSEKPYATEYALALVALPTDNEDKEEALRAFS 138
Query: 342 DFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSEDANVCLSED 401
+ V + + + TG L D +++ K+LVA L + L E
Sbjct: 139 EDV--LNHKVQLNVELKVTGS-PNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKE- 194
Query: 402 DATIFKEIEKLMQSSESEDGEEVWE 426
+ + + Q + +W+
Sbjct: 195 ---LVDQYKAA-QEAARVAHLAIWK 215
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 4e-16
Identities = 107/668 (16%), Positives = 204/668 (30%), Gaps = 218/668 (32%)
Query: 60 HLDQD--EMNDC--TLVGIVNPSLFFLRLNQFQDIRVYIILLTLPRDVNIIYSLSRAILG 115
H+D + E ++ + + F+ +D++ + +++ I A+ G
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 116 TKRMAATNTTLVSEFKKSVKR------RPNAPCYYFQDETWTIKQID------EYSNKIA 163
T R+ TL+S+ ++ V++ R N Y F +Q Y +
Sbjct: 64 TLRLF---WTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 164 RILQDDG--FKKGDV------LAL---MCENRPE-YVGV---------WLGAAKL---GV 199
R L +D F K +V L L + E RP V + W+ V
Sbjct: 118 R-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 200 ISKLSN-VVWLAQLLGKKMVHFKGIILE----LHRLMKLNKEIGVDVSKT---------- 244
K+ + WL L + +LE L + N D S
Sbjct: 177 QCKMDFKIFWLN--LKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 245 -SSRYSKEQCHP-GLLCLARSDD---KSGYN------RVQVTDTSDSELAMILFVDYSDK 293
R K + + LL L + +N ++ +T T ++ F+ +
Sbjct: 233 ELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLT-TRFKQVT--DFLSAATT 286
Query: 294 QEIPYEDLV-PIHRPQL-----------ISNLPFQAIECYLAGVEPL----------EGV 331
I + + ++ +LP + + P +G+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-----TTNPRRLSIIAESIRDGL 341
Query: 332 --WSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAK 389
W + D T + ++V L E R+ FD L+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNV-LEPAEY--RKM----FD--------------RLSV 380
Query: 390 FSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVIEKQA--------- 440
F A++ + + D V L S ++EKQ
Sbjct: 381 FPPSAHI--PT------ILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPS 430
Query: 441 INFD---QQDEEY-----VIDEAALLDEEEMTEFVRQLQ------------SKIEQLEVD 480
I + + + EY ++D + + + + IE E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 481 VTYS------RFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLA 534
+ RF ++ ST A+ ++ N Q+ Y I
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---------------- 534
Query: 535 LMCENRPEYVGVWLGAAKLGVISALINTNLKK--QPLVHSISTVKSKAIIVSALYYPE-- 590
C+N P+Y +++A+++ L K + L+ S K ++ AL +
Sbjct: 535 --CDNDPKYE---------RLVNAILD-FLPKIEENLICS----KYTDLLRIALMAEDEA 578
Query: 591 --IEAIRE 596
EA ++
Sbjct: 579 IFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 6e-10
Identities = 112/786 (14%), Positives = 219/786 (27%), Gaps = 259/786 (32%)
Query: 288 VDY-SDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFL----DD 342
+D+ + + + Y+D++ + + N + ++ + + + S+ D + D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDHIIMSKDA 60
Query: 343 FTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSEDANVCLSEDD 402
+ ++ EE V+ F ++E L IN + + +
Sbjct: 61 VSGTLRLFWTLLSKQEEM------VQKF-VEEVLRINYKFLMSPIKTEQRQ-----PSMM 108
Query: 403 ATIFKE-IEKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDE------- 454
++ E ++L ++ V + +QA+ + + + V+ +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKL--RQAL-LELRPAKNVLIDGVLGSGK 163
Query: 455 -----AALLDEEEMTEF--------VRQLQSKIEQLEVDVT-YSRFKQEASNARSTNDAA 500
L + + ++ S LE+ + N S +D +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHS 220
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKG-DVLALMCENRPEYVGVWLGAAKLGVISAL 559
N++ +I ++ R+L+ ++ VL V +A
Sbjct: 221 ----SNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQ----NAKAWNAF 262
Query: 560 INTNLKKQPLVHSISTVKSKAII--VSALYYPEIEAIRESI---PD--VKLFL--LDETK 610
NL + L+ T + K + +SA I S+ PD L L LD
Sbjct: 263 ---NLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 611 PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK 670
DLP EV + P + S++ A + + K
Sbjct: 316 QDLP-----------REVLTTNPRRL--SII------------AESIRDGLATW--DNWK 348
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG 730
H NC + I+ SS+ + F + + +A
Sbjct: 349 H----------VNCDKLTT------------IIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 731 IYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790
I + +S+ + K K
Sbjct: 387 IPTILLSLIWFDVIKSDVM---------------VVVNKLHKY----------------- 414
Query: 791 NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850
+LV E + I I +L + YN P
Sbjct: 415 SLVEKQPKESTISI---------PS---IYLELKVKLENEYALHRSIVD-HYNIP----- 456
Query: 851 EIKQSDPS--------RHFY---GY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
K D ++FY G+ E +++ F+ FL
Sbjct: 457 --KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL--FR---MVFLD--------FR 501
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS 958
+L K R D+ W S + + Y PY I D
Sbjct: 502 FLEQKIRH-DSTAWNASG-SILNTLQQLKFYKPY---------------------ICD-- 536
Query: 959 NQVDLKLLVQGLDANLPAYARPL----FVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISD 1014
N + LV + LP L + ++ +I L E I +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLL------------RIALMAED---EAIFE 581
Query: 1015 DLYVRQ 1020
+ + +Q
Sbjct: 582 EAH-KQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 8e-07
Identities = 49/265 (18%), Positives = 88/265 (33%), Gaps = 59/265 (22%)
Query: 9 LLEDGVDREIRWLVYNVDHLDQ------EENEDSSSEDEFDRVPVLASSELPIPK----- 57
+ DG+ W N D L E + FDR+ V S IP
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSL 394
Query: 58 -WAHLDQDEMNDCTLVGIVNPSLFFLRLNQFQDIRVYIILLTLPRDVNIIYSLSRAILGT 116
W + + ++ + + SL + + I + I L L + Y+L R+I+
Sbjct: 395 IWFDVIKSDVMV-VVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 117 KRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQID--EYSNKIARILQDDGF--K 172
+ F P Y++ +K I+ E + D F +
Sbjct: 453 YN-------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 173 K-----------GDVLAL----------MCENRPEY---VGVWL----GAAKLGVISKLS 204
K G +L +C+N P+Y V L + + SK +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 205 NVVWLAQLLGKKMVHFKGIILELHR 229
+++ +A L+ + + I E H+
Sbjct: 566 DLLRIA-LMAED----EAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-06
Identities = 107/754 (14%), Positives = 211/754 (27%), Gaps = 258/754 (34%)
Query: 370 FDLDEELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLP 429
F+ E K+++++ F ++ + K+++ + +S S+ EE+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFD----------CKDVQDMPKSILSK--EEI----- 51
Query: 430 DKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQE 489
+H+I + + LL ++E E V++ ++ ++ S K E
Sbjct: 52 ---DHIIMSKD---AVSGTLRLFW--TLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 490 ASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDG--FKKGDV------LAL---MCE 538
+ T Y + R L +D F K +V L L + E
Sbjct: 102 ------QRQPSMMT--------RMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 539 NRPE-YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRES 597
RP V + G G K + + S + +
Sbjct: 147 LRPAKNVLID-GVLGSG-----------KTWVA--LDVCLSYKV--------------QC 178
Query: 598 IPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM 657
D K+F L+ + P ++ E LQ LLY T +
Sbjct: 179 KMDFKIFWLNLKNCNSPE--TVL-----------EMLQK---LLYQIDPNWTSRSDHSSN 222
Query: 658 PNFKVLLGGQVGKHLLSLGSGDVIY-NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716
++ + LL Y NCL L+L
Sbjct: 223 IKLRIHSIQAELRRLLKSKP----YENCL---------------LVL------------- 250
Query: 717 NYFRDCAKYKCNAGIY----IGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK 772
+ NA + + C+ LL ++ QV +
Sbjct: 251 ---LNV----QNAKAWNAFNLS--CKILLTTRFK------QVTDFLSAA----------T 285
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNTEG----AVGIIPTLLP---TFLHPVAIIQFDLVE 825
H+ T D + + P LP +P +
Sbjct: 286 TTHISLDHHSMTLTP--------DEVKSLLLKYLDCRPQDLPREVLTTNPRRL------- 330
Query: 826 NQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR-HFYGYADKKESQKKILE---NVFKP 881
II E + + + + + + I+E NV +P
Sbjct: 331 ---------------------SIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP 368
Query: 882 GD--KYFLSGDMMVMDE--------LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931
+ K F + V L ++F D V+ + + + K
Sbjct: 369 AEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIKSDV----MVVVNKLHKYSLVEKQPK 422
Query: 932 YTEFTVYGV---KVGDLDGRAGM-IAIVDTSNQVDLKLLVQGLDANLPA---YARPLFVR 984
+ ++ + L+ + +IVD ++ D P Y +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQY---FYSH 476
Query: 985 I---MKAIEMTGTFKIKKIQLQNEGF-------------DPSQISDDLY-VRQGSEFVRM 1027
I +K IE + ++ + F I + L ++ ++
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 1028 TPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYAD 1061
YE+++N I+ + + + + Y D
Sbjct: 537 NDPKYERLVNA----ILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-04
Identities = 74/487 (15%), Positives = 129/487 (26%), Gaps = 156/487 (32%)
Query: 10 LEDGVDREIRWLVYNV-------DHLDQEEN-------EDSSSEDEFDRVPVLASSELPI 55
++ +D +I WL N+ L+ + +S D + L +
Sbjct: 176 VQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQA 232
Query: 56 PKWAHLDQDEMNDCTLV--GIVNPSLFFLRLNQFQDIRVYIILLTLPRDVNIIYSLSRAI 113
L +C LV + N N F ++ I+L T R + LS A
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKA----WNAF-NLSCKILLTT--RFKQVTDFLSAAT 285
Query: 114 LGTKRMAATNTTLVSE-----FKKSVKRRPNAPCYYFQDETWTIKQIDEYS-NKIARILQ 167
+ + TL + K + RP QD + + + IA ++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREVLTTNPRRLSIIAESIR 338
Query: 168 DDGFKKGDVLALMCENRPEYVGVW--LGAAKLGVISKLSNVVWLAQL---LGKKMVHFKG 222
D + W + KL I + S L L +KM
Sbjct: 339 DG------------LATWDN---WKHVNCDKLTTIIESS----LNVLEPAEYRKMFDRLS 379
Query: 223 IILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSEL 282
+ + LL L D SD +
Sbjct: 380 VFPP-----------SAHIP------------TILLSLIWFDV----------IKSDVMV 406
Query: 283 AMILFVDYSDKQEIPYEDLVPIHRPQL-----ISNLPF---QAIECYLA---------GV 325
+ YS ++ P E + I L + N ++ Y
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 326 EPLEGVWSQAAYDFL-------------DDFTRLFA--RVVSVKL--HGEETGGRRYAVE 368
L+ + Y + F +F R + K+ +
Sbjct: 467 PYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 369 LF-DLD-------EELNINKELVALDLAKF----------SEDANV---CLSEDDATIFK 407
L + + LV + F S+ ++ L +D IF+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 408 EIEKLMQ 414
E K +Q
Sbjct: 582 EAHKQVQ 588
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-14
Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 23/209 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+Q+ + +A+ L G GD + + EYV +LGA + G I+ ++
Sbjct: 62 SQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVT 120
Query: 569 LVHSISTVKS---KAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625
S S + AI+ ++ ++ P + E DL+
Sbjct: 121 DERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEV--------DLLDLDAP 172
Query: 626 SEVKPSEPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLSLGSG 678
+ E S Y+ YTSG+T P + NF+ L+ G
Sbjct: 173 NGYTFKED--EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN 230
Query: 679 DVIYNCLPMYHSAGGLIGTI-PALILGSS 706
+ + LP YH GL+ I ++ G
Sbjct: 231 SALVSWLPFYHD-MGLVIGICAPILGGYP 258
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 120 AATNTTLVSEFKKSVKRRPNAPCYYFQD---------ETWTIKQIDEYSNKIARILQDDG 170
+ +L + + + +P+ P + F D T T Q+ + +A+ L G
Sbjct: 20 HMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG 79
Query: 171 FKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
GD + + EYV +LGA + G I
Sbjct: 80 -STGDRVVISAPQGLEYVVAFLGALQAGRI 108
|
| >3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+L KL E+ + H G + A + R +V T ++ + F
Sbjct: 5 LQLDKLVNEMTQHYENSVPEDLT--VHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 62
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIEC 320
VD+ D + P +DL + R +S LPFQAIEC
Sbjct: 63 VDFGDNGDCPLKDLRAL-RSDFLS-LPFQAIEC 93
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-12
Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 34/204 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI-----NTN 563
Q+D+++ IA LQ +G K GD + L+ + +LG G I+ I
Sbjct: 44 EQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKL 103
Query: 564 LKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
L K ++ K +++ A + I L+ P + + +
Sbjct: 104 LDK--AQRIVTNSKPVIVLMIA----------DHIKKFTADELNTN-PKFLKIPAIALES 150
Query: 624 PASEVKPS--EPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLS 674
S S+ + ++ YTSG+T PK ++ N +
Sbjct: 151 IELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKI------FTSFH 204
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTI 698
+ +I++ LP +H GLIG I
Sbjct: 205 MNDETIIFSWLPPHHD-MGLIGCI 227
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 116 TKRMAATNTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGF 171
K+ +LV + PN F + ET T +Q+D+++ IA LQ +G
Sbjct: 3 LKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGA 62
Query: 172 KKGDVLALMCENRPEYVGVWLGAAKLGVI 200
K GD + L+ + +LG G I
Sbjct: 63 KPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 36/197 (18%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + + ++ L+ G GD +A + N ++ + +G + N L +
Sbjct: 51 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE 110
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPAS 626
+ + ++ + K ++ P +EAIR + V+ F++ ++ + +
Sbjct: 111 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP 170
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPK--------------AAIMPNFKVLLGGQVGKHL 672
P + + + Y T+GTTGLPK AA + +
Sbjct: 171 ---VRVPERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAASLVD------------G 213
Query: 673 LSLGSGDVIYNCLPMYH 689
+L DV+ +PM+H
Sbjct: 214 TALSEKDVVLPVVPMFH 230
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ V DE GY+ KDR D + GE +S++++E + + E V +
Sbjct: 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP- 469
Query: 943 GDLDGRAG----MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998
+ + + +L L A + P + I T K
Sbjct: 470 ---HPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFL 526
Query: 999 KIQL 1002
K L
Sbjct: 527 KRAL 530
|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-06
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 254 HPGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPI 304
PG C A + + + R +V S A++ F+DY + +E+ ++ PI
Sbjct: 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 70
|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 254 HPGLLCLAR-SDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPI 304
PG C A +D + R +V S A++ F+DY + +E+ ++ PI
Sbjct: 3 KPGDECFALYWEDNK-FYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54
|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 255 PGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNL 313
PG C A + + + R +V S A++ F DY + +E+ ++ P+ + +
Sbjct: 12 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV-QTEAWVRD 70
Query: 314 PFQA 317
P
Sbjct: 71 PNSG 74
|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 245 SSRYSKEQCHPGLLCLAR-SDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLV 302
+S G C+A S+D Y ++ + ++ A I F Y + + P +L
Sbjct: 1 ASTQPTHSWKVGDKCMAVWSEDGQCY-EAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59
Query: 303 PI 304
P+
Sbjct: 60 PV 61
|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 243 KTSSRYSKEQCHPGLLCLAR-SDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYED 300
K ++ S +Q G C A S+D Y + E ++++ Y +++E D
Sbjct: 1 KKNTAASLQQWKVGDKCSAIWSEDGCIY-PATIASIDFKRETCVVVYTGYGNREEQNLSD 59
Query: 301 LVPI 304
L+
Sbjct: 60 LLSP 63
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 592 EAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTG 650
E +I + L L E + VK D Y I+TSGTTG
Sbjct: 109 EEFPLTIEGISLVSLSEIESAKLAEMP---YERTHSVKG-------DDNYYIIFTSGTTG 158
Query: 651 LPKAAIMP-----NFKVLLGGQVGKHLLSLGSGDVI 681
PK + +F + + +
Sbjct: 159 QPKGVQISHDNLLSF---TNWMIEDAAFDVPKQPQM 191
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 9e-04
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ ++ ++ + + + P Y E T Q+ S+ IA + + +
Sbjct: 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFG 61
Query: 182 E 182
Sbjct: 62 A 62
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCE 182
L FK++V P+AP + +T + +++DE +N+IAR LQ G KG V+AL +
Sbjct: 463 TKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTK 522
Query: 183 NRPEYVGVWLGAAKLG 198
E V LG K G
Sbjct: 523 RSLELVIGILGVLKAG 538
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 45/178 (25%)
Query: 493 ARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549
+ DA A T ++DE +N+IAR LQ G KG V+AL + E V
Sbjct: 474 VNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV----- 528
Query: 550 AAKLGVISALINTNLK----------KQP---LVHSISTVKSKAIIVSALYYPEIEAIRE 596
LGV LK K P + + ++ + ++ + +
Sbjct: 529 IGILGV--------LKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY 580
Query: 597 SIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPK 653
+ + + D + + PA+ + P + Y +YTSGTTG PK
Sbjct: 581 TGTTLFI--------DDQTRFEEQASDPATAIDP-------NDPAYIMYTSGTTGKPK 623
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 6e-04
Identities = 12/84 (14%), Positives = 31/84 (36%)
Query: 115 GTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKG 174
+ + T+V+ F + P+ + + +Q+ + + +++ L + + G
Sbjct: 18 NSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPG 77
Query: 175 DVLALMCENRPEYVGVWLGAAKLG 198
L + E E + L G
Sbjct: 78 VCLGVYGEYSRESITCLLAILLSG 101
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 6e-04
Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 54/207 (26%)
Query: 493 ARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549
A A + Q+ + + +++ L + + G L + E E + L
Sbjct: 37 AALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA 96
Query: 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY------YPEIEAIRESIPD--V 601
G Y P E
Sbjct: 97 ILLSG------------------------------HHYLYIDLKQPA-AWNAELCRQVDC 125
Query: 602 KLFL----LDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPKAAI 656
+L L LP + PA+ + P +D + Y ++SGTTG PKA
Sbjct: 126 RLILDCSTTPTPANGLPCVPVR--HLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIA 183
Query: 657 MPNFKV--LLGGQVGKHLLSLGSGDVI 681
+ + L GQ L+
Sbjct: 184 CTHAGITRLCLGQ---SFLAFAPQMRF 207
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1102 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.94 | |
| 4b9w_A | 201 | TDRD1, tudor domain-containing protein 1; replicat | 99.93 | |
| 4b9x_A | 226 | TDRD1, tudor domain-containing protein 1; replicat | 99.93 | |
| 2wac_A | 218 | CG7008-PA; unknown function, tudor, beta-barrel, n | 99.86 | |
| 3ntk_A | 169 | Maternal protein tudor; tudor domain, OB-fold, GER | 99.83 | |
| 3bdl_A | 570 | Staphylococcal nuclease domain-containing protein | 99.83 | |
| 2hqx_A | 246 | P100 CO-activator tudor domain; human P100 tudor d | 99.81 | |
| 2diq_A | 110 | Tudor and KH domain-containing protein; tudor doma | 99.77 | |
| 3fdr_A | 94 | Tudor and KH domain-containing protein; TDRD2, str | 99.73 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 99.57 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 99.56 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 99.53 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 99.53 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 99.51 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 99.51 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 99.5 | |
| 2eqk_A | 85 | Tudor domain-containing protein 4; structural geno | 99.49 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.49 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 99.49 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 99.48 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 99.48 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.48 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 99.48 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 99.47 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 99.46 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.45 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 99.43 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 99.43 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 99.43 | |
| 3s6w_A | 54 | Tudor domain-containing protein 3; methylated argi | 99.43 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 99.42 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 99.42 | |
| 1mhn_A | 59 | SurviVal motor neuron protein; SMN, SMA, spinal mu | 99.42 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.41 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 99.4 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 99.4 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.4 | |
| 2d9t_A | 78 | Tudor domain-containing protein 3; structural geno | 99.39 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 99.38 | |
| 4a4f_A | 64 | SurviVal of motor neuron-related-splicing factor; | 99.38 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 99.37 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 99.36 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.35 | |
| 3pnw_C | 77 | Tudor domain-containing protein 3; FAB, structural | 99.35 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 99.34 | |
| 1g5v_A | 88 | SurviVal motor neuron protein 1; mRNA processing, | 99.34 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 99.33 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.32 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 99.24 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 99.18 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.15 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 99.14 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 99.09 | |
| 2equ_A | 74 | PHD finger protein 20-like 1; tudor domain, struct | 98.95 | |
| 2ldm_A | 81 | Uncharacterized protein; PHF20, tudor domain, epig | 98.34 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.73 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.71 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.59 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 98.57 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 98.54 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.49 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 98.49 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.45 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 98.41 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 98.25 | |
| 3qii_A | 85 | PHD finger protein 20; tudor domain, structural ge | 98.15 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.13 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 98.03 | |
| 2cnr_A | 82 | FAS, ACP, acyl carrier protein; polykdetide, phosp | 98.02 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 98.0 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 97.99 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 97.99 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 97.97 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 97.95 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 97.79 | |
| 2kjs_A | 87 | Putative acyl carrier protein; alpha, ACP, PNS, st | 97.77 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 97.68 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 97.68 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 97.64 | |
| 1klp_A | 115 | ACP, ACPM, meromycolate extension acyl carrier pro | 97.56 | |
| 3gzm_A | 81 | Acyl carrier protein; helix bundle, phosphopanteth | 97.55 | |
| 2fq1_A | 287 | Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy | 97.53 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 96.65 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 97.5 | |
| 2qnw_A | 82 | Acyl carrier protein; malaria, SGC, structural gen | 97.47 | |
| 2kwl_A | 84 | ACP, acyl carrier protein; structural genomics, se | 97.38 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 97.35 | |
| 2dig_A | 68 | Lamin-B receptor; tudor domain, integral nuclear e | 97.29 | |
| 2jq4_A | 105 | AGR_C_4658P, hypothetical protein ATU2571; ATC2521 | 97.26 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 97.23 | |
| 3ejb_A | 97 | Acyl carrier protein; protein-protein complex, cyt | 97.21 | |
| 2l8d_A | 66 | Lamin-B receptor; DNA binding protein; NMR {Gallus | 97.18 | |
| 2amw_A | 83 | Hypothetical protein NE2163; all helical protein, | 96.73 | |
| 1vku_A | 100 | Acyl carrier protein; TM0175, structural genomics, | 96.65 | |
| 2l4b_A | 88 | Acyl carrier protein; infectious disease, human gr | 96.46 | |
| 1dv5_A | 80 | APO-DCP, APO-D-alanyl carrier protein; 3-helix bun | 96.38 | |
| 2kw2_A | 101 | Specialized acyl carrier protein; structural genom | 96.36 | |
| 4dxe_H | 101 | ACP, acyl carrier protein; acyl-carrier-protein sy | 96.35 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.04 | |
| 1fh1_A | 92 | NODF, nodulation protein F; ROOT nodulation factor | 95.94 | |
| 3ce7_A | 107 | Specific mitochodrial acyl carrier protein; malari | 94.6 | |
| 2lki_A | 105 | Putative uncharacterized protein; helical bundle, | 94.25 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 93.69 | |
| 2cgq_A | 113 | Acyl carrier protein ACPA; RV0033, protein transpo | 93.45 | |
| 2kci_A | 87 | Putative acyl carrier protein; alpha, ACP, PCP, st | 92.44 | |
| 4eqp_A | 143 | Thermonuclease; staphylococcal nuclease, hyperstab | 91.93 | |
| 2l9f_A | 102 | CALE8, meacp; transferase, acyl carrier protein; N | 88.29 | |
| 3bdl_A | 570 | Staphylococcal nuclease domain-containing protein | 87.42 | |
| 2eqj_A | 66 | Metal-response element-binding transcription facto | 86.81 | |
| 3h8z_A | 128 | FragIle X mental retardation syndrome-related Pro; | 84.38 | |
| 2g3r_A | 123 | Tumor suppressor P53-binding protein 1; tandem tud | 82.96 | |
| 1ssf_A | 156 | Transformation related protein 53 binding protein | 81.08 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-92 Score=932.01 Aligned_cols=626 Identities=17% Similarity=0.219 Sum_probs=528.7
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+..+ ++++.++|.++|++++. +|+++++++++++++|+++++..||.+...++..+.++.|.+
T Consensus 401 ~~~y~~~lf~~~~-i~~l~~~~~~lL~~l~~-----~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~-- 472 (1304)
T 2vsq_A 401 KLAYNENVFDEAF-ILRLKSQLLTAIQQLIQ-----NPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKE-- 472 (1304)
T ss_dssp EEEEETTTSCHHH-HHHHHHHHHHHHHHHHH-----STTSBGGGCCCCCHHHHHHHHTTTSCCCCCCCCCCHHHHHHH--
T ss_pred EEEECCccCCHHH-HHHHHHHHHHHHHHhcc-----CccccccccCCCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHH--
Confidence 6789999999999 99999999999999999 999999999999999999999999998887776554554444
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|++||||||.+|.+
T Consensus 473 -~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~ 551 (1304)
T 2vsq_A 473 -AVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPED 551 (1304)
T ss_dssp -HHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHH
T ss_pred -HHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHH
Confidence 5999999999998765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCC-ceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTS 646 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 646 (1102)
|+.+++++++++++|++......+.. ++. ...+.+++. ... .. . ...+.....++++|||+|||
T Consensus 552 rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~-~~-~--~~~~~~~~~~~~~ayiiyTS 616 (1304)
T 2vsq_A 552 RISYMLADSAAACLLTHQEMKEQAAE----LPYTGTTLFIDDQ-------TRF-EE-Q--ASDPATAIDPNDPAYIMYTS 616 (1304)
T ss_dssp HHHHHHHHHTCCEEEECSTTCTTSTT----CCCCSEEEESSCG-------GGG-GS-C--SSCCCCCCCTTSEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEECcchhhhhhc----cCCCCcEEEeccc-------ccc-cc-c--cCCCCCCCCCCCeEEEEeCC
Confidence 99999999999999998865543221 221 223333321 011 11 1 11112356789999999999
Q ss_pred CCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHh
Q psy12852 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCA 723 (1102)
Q Consensus 647 GSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~ 723 (1102)
||||+||||+++|+++.+. .+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .++..+.+.|+
T Consensus 617 GSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~ 694 (1304)
T 2vsq_A 617 GTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTLLDTERLTDLIL 694 (1304)
T ss_dssp CSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHH
Confidence 9999999999999999986 55667889999999999999999987 8999999999999999875 78999999999
Q ss_pred hcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCC--Cc
Q psy12852 724 KYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE--GA 801 (1102)
Q Consensus 724 ~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~ 801 (1102)
++++|+++++|++++.|..... ....+++.+++|||+++++++++|.+.++..+++|.||+||++++++...... ..
T Consensus 695 ~~~vt~~~~~p~~~~~l~~~~~-~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 695 QENVNVMFATTALFNLLTDAGE-DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp HHTCCEEEEEHHHHHHHHHHCS-HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred HcCCcEEEccHHHHHHHHhhch-hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 9999999999999999976532 23457889999999999999999999998778999999999998877543221 11
Q ss_pred ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccC
Q psy12852 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFK 880 (1102)
Q Consensus 802 ~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~ 880 (1102)
.... +++.+. .+..++++|++ + +++|.|++||++ ++|+ .+++||+|+| +|+++|+.+||.
T Consensus 774 ~~~~-~iG~p~-~~~~~~i~d~~-~-----------~~~p~G~~GEl~----i~G~-~v~~GY~~~p~~T~~~f~~~p~~ 834 (1304)
T 2vsq_A 774 ISSL-PIGKPI-SNASVYILNEQ-S-----------QLQPFGAVGELC----ISGM-GVSKGYVNRADLTKEKFIENPFK 834 (1304)
T ss_dssp CSSC-CCBEEC-TTEEEEEECTT-S-----------CBCCTTCCEEEE----EEET-TCCCCBTTCHHHHHHHEEECTTS
T ss_pred CCCC-CCceee-CCCEEEEECCC-c-----------CCCCCCCceEEE----Eecc-ccCccccCCcccchhhhccCCCC
Confidence 1112 222222 45677777765 3 456899999876 4577 4889999997 899999999998
Q ss_pred CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCc
Q psy12852 881 PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQ 960 (1102)
Q Consensus 881 ~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~ 960 (1102)
+|++||||||+|++++||+|+|+||+|+|||+||+||+|+|||++|.++|+|++|+|++.+ +..+...+++|++....
T Consensus 835 ~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~--~~~~~~~l~a~vv~~~~ 912 (1304)
T 2vsq_A 835 PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADR--HESGDASINAYLVNRTQ 912 (1304)
T ss_dssp TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEEC--CSSSCCEEEEEEECSSS
T ss_pred CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEe--cCCCCEEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999844 33456667777766667
Q ss_pred cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCC
Q psy12852 961 VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQP 1040 (1102)
Q Consensus 961 ~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1040 (1102)
.+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++....... ..+ ....+..|+.+..+|
T Consensus 913 ~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~---~~~--------~~p~~~~e~~l~~~~ 981 (1304)
T 2vsq_A 913 LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLA---EEW--------IGPRNEMEETIAQIW 981 (1304)
T ss_dssp SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGGGGC---CCC--------CCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcchhhhc---ccc--------cCCCChHHHHHHHHH
Confidence 889999999999999999999999999999999999999999876432110 011 112234678888999
Q ss_pred cchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1041 GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1041 ~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+++||. +.|++++|||++|||||+|++|+++|++. |+.+++.+||++|||++||+
T Consensus 982 ~~vL~~-~~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~ 1037 (1304)
T 2vsq_A 982 SEVLGR-KQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISA 1037 (1304)
T ss_dssp HHHHTC-SCCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHH
T ss_pred HHHcCC-CccCCCCCHHHhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHH
Confidence 999998 88999999999999999999999999987 99999999999999999985
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-87 Score=820.17 Aligned_cols=569 Identities=14% Similarity=0.093 Sum_probs=387.8
Q ss_pred HHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchh
Q psy12852 466 FVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPE 542 (1102)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~ 542 (1102)
+....+....+.....+++.+++. +|+++|+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|+++
T Consensus 12 ~~~~~~~~~~~~~~~~tl~~~~~~--~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~ 89 (620)
T 4dg8_A 12 IVRMSQNSLLDLYAHPTVVARFSE--MAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRE 89 (620)
T ss_dssp -----CCSTTSGGGSCCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHH
T ss_pred HHHHhcCCcCCCCCCCCHHHHHHH--HHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence 333333344444444445555554 6999999999998775 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhcc
Q psy12852 543 YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT 622 (1102)
Q Consensus 543 ~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1102)
+++++|||+|+|++|||+||.+|.+++.+++++++++++|++....... .......+.. .
T Consensus 90 ~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~~~~~-------------~ 149 (620)
T 4dg8_A 90 SITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCVPVRH-------------L 149 (620)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEEEGGG-------------C
T ss_pred HHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCceeeecc-------------C
Confidence 9999999999999999999999999999999999999999765432211 1111111111 0
Q ss_pred CCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 623 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
.............++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++++|++|+.+ ++++|.+|+
T Consensus 150 ~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~ 227 (620)
T 4dg8_A 150 PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAA-TLEIWGALL 227 (620)
T ss_dssp CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHH-HHHHHHHHT
T ss_pred CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHH-HHHHHHHHh
Confidence 0111111123457899999999999999999999999999987766 56788999999999999999998 888999999
Q ss_pred cCceEEEeC--CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhh
Q psy12852 703 LGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780 (1102)
Q Consensus 703 ~G~~lv~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~ 780 (1102)
.|+++++.+ .+++..+.+.|+++++|+++++|++++.|+.... ....+++.+++|||++++++++++.+.+++++++
T Consensus 228 ~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 306 (620)
T 4dg8_A 228 NGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLV 306 (620)
T ss_dssp TTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEE
T ss_pred cCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEE
Confidence 999999975 4899999999999999999999999999876533 3456789999999999999999999988877999
Q ss_pred hccccccCCcccccCCCCCCc-ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcc
Q psy12852 781 EFYGATEGNANLVNMDNTEGA-VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859 (1102)
Q Consensus 781 n~YG~TE~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~ 859 (1102)
|.||+||++++++........ .....+++.+. .+..+.++|++ +.+ .+|.|++||++ +.|+ .
T Consensus 307 n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~i~d~~-~~~----------~~~~g~~GEl~----i~G~-~ 369 (620)
T 4dg8_A 307 NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAI-AGTAVLLLDEH-GQE----------IAEPDRAGEIV----AFGA-G 369 (620)
T ss_dssp EEECCGGGCSCSEEEECCTGGGGSSSCCCBEEC-TTEEEEEECTT-SCB----------CCSSSCCEEEE----EEET-T
T ss_pred eeEchhhhhhheEEEeccccccCCCCCCceecc-cCcEEEEECcc-CCC----------CCCCCCceEEE----Eecc-c
Confidence 999999999877643322111 11111222222 45667777765 322 24778888876 4588 4
Q ss_pred cccccCCch-HHHHHHhhcccCCCC--eEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeE
Q psy12852 860 HFYGYADKK-ESQKKILENVFKPGD--KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFT 936 (1102)
Q Consensus 860 ~~~gY~~~~-~t~~~f~~~~~~~g~--~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~ 936 (1102)
++.||+|++ .|.++|+.+|+. |. +||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|.+|+
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~-~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~ 448 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYR-GRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEET-TEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEE
T ss_pred cccccCCChhhhhhhhccCCCC-CCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEE
Confidence 889999987 788999888753 33 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCce
Q psy12852 937 VYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDL 1016 (1102)
Q Consensus 937 vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~ 1016 (1102)
|++.+++ .....+++++.. .++++++|+++||.||+|+.|+++++||+|+||||||++|++........
T Consensus 449 Vv~~~~~--~~~~lv~~~~~~-----~~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~---- 517 (620)
T 4dg8_A 449 LLVRERN--GVKQLLCAWTGK-----ADASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLER---- 517 (620)
T ss_dssp EEEEEET--TEEEEEEEEEEC-----TTCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC------
T ss_pred EEEEeCC--CceEEEEEEecC-----hHHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccccccc----
Confidence 9986554 233334444422 22345677888999999999999999999999999999998876443211
Q ss_pred EEEcCCceeecCHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhC--CCCccceEEEEeccccccc
Q psy12852 1017 YVRQGSEFVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFK--PGDKYFLSVIIRNFSLDVM 1094 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~--~g~~l~~~~l~~~pti~~l 1094 (1102)
. ....+..|+.+..+|+++|+. +.++.+||||++|||||+|+||+++|++ .|+.+++.+||+||||++|
T Consensus 518 ~--------~~~~~~~e~~l~~iw~~vL~~-~~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~l 588 (620)
T 4dg8_A 518 C--------ASALDPDQRGCAQLWSELLGC-EVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQF 588 (620)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------cCCCCHHHHHHHHHHHHHhCC-CCCCCCCChhhccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHH
Confidence 0 111223567788899999998 8899999999999999999999999988 4999999999999999999
Q ss_pred cCC
Q psy12852 1095 APP 1097 (1102)
Q Consensus 1095 aa~ 1097 (1102)
|+.
T Consensus 589 a~~ 591 (620)
T 4dg8_A 589 SRL 591 (620)
T ss_dssp ---
T ss_pred HHH
Confidence 975
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-83 Score=790.69 Aligned_cols=572 Identities=15% Similarity=0.169 Sum_probs=456.7
Q ss_pred hhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 479 VDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 479 ~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
.+.+++.+++. +|+ |+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|+
T Consensus 25 ~~~~l~~~~~~--~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 25 QDLPLTDILTR--HAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp CCCCTTHHHHT--TTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CcCCHHHHHHH--hhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 33445555554 455 99999998775 999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKP 630 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1102)
+|||++|.+|.+++.++++++++++++++.... ..........+....+...... ....+.+......... .
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 177 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS-GEHNLQDAINHPAEDF--T 177 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC-STTBHHHHHHSCCSSC--C
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc-cccchhhhhccccccc--C
Confidence 999999999999999999999999999987654 3333333344444433332211 1223333333222221 1
Q ss_pred CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHH-HHHHhHhhcCceEEE
Q psy12852 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGL-IGTIPALILGSSIAI 709 (1102)
Q Consensus 631 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~-~~i~~~l~~G~~lv~ 709 (1102)
.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|.++.. ++++.+++.|+++++
T Consensus 178 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 178 ATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 2456789999999999999999999999999999999999999999999999999999887743 379999999999999
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccC----CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE----SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 785 (1102)
.+..++..+++.++++++|++.++|+++..++.... .....+++.+++|||++++++.++|.+.++. +++|.||+
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~-~~~~~YG~ 336 (617)
T 3rg2_A 258 AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC-QLQQVFGM 336 (617)
T ss_dssp CSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS-EEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC-cEEEEecc
Confidence 998999999999999999999999999999876432 2245678999999999999999999998865 89999999
Q ss_pred ccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 786 TEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 786 TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
||+++.++........ .....+.|.. ....+.++|++ | +++|.|++||++ +.|| .++.||+
T Consensus 337 tE~~~~~~~~~~~~~~-~~~~~G~p~~-~~~~~~i~d~~-~-----------~~~p~G~~GEl~----i~G~-~v~~GY~ 397 (617)
T 3rg2_A 337 AEGLVNYTRLDDSAEK-IIHTQGYPMC-PDDEVWVADAE-G-----------NPLPQGEVGRLM----TRGP-YTFRGYY 397 (617)
T ss_dssp TTEEEEECCTTSCHHH-HHHCCCEESC-TTCEEEEECTT-S-----------CBCCTTCCEEEE----EECS-SSCSCCT
T ss_pred CcceeecccCCCcccc-cccCCCccCC-CCceEEEECCC-C-----------CCCCCCCceEEE----ecCc-cccchhc
Confidence 9998766544322110 0011111111 23456666654 3 356889888876 5588 4889999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
|++ .|.++|.. ++||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|.+|+|++.+++.
T Consensus 398 ~~p~~t~~~f~~------~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~ 471 (617)
T 3rg2_A 398 KSPQHNASAFDA------NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDEL 471 (617)
T ss_dssp TCHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred CChhhhhhccCC------CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcc
Confidence 997 67777743 68999999999999999999999999999999999999999999999999999999866553
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCc
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSE 1023 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~ 1023 (1102)
+...+++++......+.+++++++++ .||.||+|..|+++++||+|+||||||++|+++....... ...
T Consensus 472 --~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~--------~~~ 541 (617)
T 3rg2_A 472 --MGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA--------GRA 541 (617)
T ss_dssp --TEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHH--------SSS
T ss_pred --cCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccccc--------ccc
Confidence 33445555544457889999999998 6999999999999999999999999999998764321100 000
Q ss_pred eeecCHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1024 FVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1024 ~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.... .++.+..+|.++|+..+.++.+||||++|||||+||+|+++|++.+..+++.+||+||||++||+.
T Consensus 542 ~~~~----~~~~l~~~~~~~l~~~~~~~~~d~Ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~pti~~la~~ 611 (617)
T 3rg2_A 542 SIPA----SKAALREVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKL 611 (617)
T ss_dssp CCCC----SHHHHHHHHGGGSCTTCCCCTTSCGGGGTCCHHHHHHHHHHHHTTSTTCCHHHHHHSCCHHHHHHH
T ss_pred cccc----cHHHHHHHHHHHhccCCCCCCCCChhhcCccHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHH
Confidence 0001 234455567777764468999999999999999999999999999999999999999999999863
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-76 Score=712.45 Aligned_cols=547 Identities=18% Similarity=0.197 Sum_probs=411.6
Q ss_pred CCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHH
Q psy12852 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARIL 522 (1102)
Q Consensus 446 ~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L 522 (1102)
++++..|+++..++++|+++++..+|.+...++...++..+++. +++++|+++|+++.+. |+||.++++++|+.|
T Consensus 4 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~l~~--~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L 81 (563)
T 1amu_A 4 SSKSILIHAQNKNGTHEEEQYLFAVNNTKAEYPRDKTIHQLFEE--QVSKRPNNVAIVCENEQLTYHELNVKANQLARIF 81 (563)
T ss_dssp -------------CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHH
T ss_pred cCCCccccccccCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHH--HHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHH
Confidence 37888999999999999999998999888888766556565555 6899999999987654 999999999999999
Q ss_pred HHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCce
Q psy12852 523 QDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK 602 (1102)
Q Consensus 523 ~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 602 (1102)
++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|.+++.+++++++++++|++......+..+. ....
T Consensus 82 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~---~~~~ 158 (563)
T 1amu_A 82 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ---FNGQ 158 (563)
T ss_dssp HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC---CCSE
T ss_pred HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc---ccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999986654332211 1123
Q ss_pred EEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEE
Q psy12852 603 LFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682 (1102)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l 682 (1102)
+..++... + ..... ........++|++||+|||||||.||||++||+++.+.+.+....++++++|+++
T Consensus 159 ~~~~~~~~-----~----~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l 227 (563)
T 1amu_A 159 VEIFEEDT-----I----KIREG--TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIG 227 (563)
T ss_dssp EEECCCST-----T----TTSCC--SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred eeeecchh-----h----ccccC--ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEE
Confidence 33332210 0 00011 1111345678999999999999999999999999999988888889999999999
Q ss_pred EecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeec
Q psy12852 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIG 759 (1102)
Q Consensus 683 ~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~G 759 (1102)
+++|++|+.+ ++.++.+|+.|+++++.+. +++..+++.++++++|++.++|+++..|... ...+++.+++||
T Consensus 228 ~~~p~~~~~~-~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~lr~~~~gG 302 (563)
T 1amu_A 228 QFASISFDAS-VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE----RILSIQTLITAG 302 (563)
T ss_dssp ECSCTTSTHH-HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT----TCCSCSEEEEES
T ss_pred EeCCccHHHH-HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc----ccccccEEEEEE
Confidence 9999999988 7789999999999999876 6899999999999999999999999877443 345788889999
Q ss_pred cCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccc
Q psy12852 760 VGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839 (1102)
Q Consensus 760 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~ 839 (1102)
+++++++.++|.+. .+++|.||+||++++++.........+...+.+.+. .+..+.++|++ |. +
T Consensus 303 ~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~-~~~~v~i~d~~-~~-----------~ 366 (563)
T 1amu_A 303 SATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPI-QNTQIYIVDEN-LQ-----------L 366 (563)
T ss_dssp SCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEEC-TTEEEEEECTT-SC-----------B
T ss_pred ecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCccccee-CCCEEEEECCC-cC-----------C
Confidence 99999999999774 479999999999977664332221111222222222 45566667754 43 4
Q ss_pred ccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeec
Q psy12852 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918 (1102)
Q Consensus 840 ~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~ 918 (1102)
++.|++||++ ++|| .++.||++++ .|.++|..+++.+|++||+|||+|++|+||+|+|+||+||+||++|+||+
T Consensus 367 ~~~g~~GEl~----v~g~-~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~ 441 (563)
T 1amu_A 367 KSVGEAGELC----IGGE-GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVE 441 (563)
T ss_dssp CCTTCEEEEE----EEET-TCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEE
T ss_pred CCCCCcEEEE----Eech-hhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeC
Confidence 5778877766 5588 5889999987 78888888888778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccch
Q psy12852 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998 (1102)
Q Consensus 919 ~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKid 998 (1102)
|.|||++|.+||+|.+|+|++.+++ .+...++++++.....+.++|+++|+++||.||+|..|+++++||+|+|||||
T Consensus 442 p~eIE~~l~~~p~V~~a~Vv~~~~~--~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 442 LEEVESILLKHMYISETAVSVHKDH--QEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred HHHHHHHHHhCCCcceEEEEEeecC--CCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChh
Confidence 9999999999999999999986654 34455566665555678999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCcchhhh
Q psy12852 999 KIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPGMIIGE 1046 (1102)
Q Consensus 999 r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1046 (1102)
|++|++....... ...+. .+.+..|+.|..+|+++|+.
T Consensus 520 r~~L~~~~~~~~~--~~~~~--------~p~~~~e~~l~~iw~~~L~~ 557 (563)
T 1amu_A 520 RKQLPEPDLTFGM--RVDYE--------APRNEIEETLVTIWQDVLGS 557 (563)
T ss_dssp GGGSCCCCCCC-------------------------------------
T ss_pred HHhcCCccccccc--ccccC--------CCCCHHHHHHHHHHHHHhhh
Confidence 9999987543211 11111 22334677888889998887
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-73 Score=684.34 Aligned_cols=497 Identities=22% Similarity=0.292 Sum_probs=411.9
Q ss_pred cccchhhhHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 475 EQLEVDVTYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
...|...+++.++.. +++++|+++|+++.. +|+||+++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 16 ~~~p~~~~l~~~l~~--~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la 93 (536)
T 3ni2_A 16 IYIPKNLPLHSYVLE--NLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLG 93 (536)
T ss_dssp CCCCSSCCHHHHHTT--TGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHH--HhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 344444455555554 699999999998752 2999999999999999999999999999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCC
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1102)
|+++|++++|++|.++.+++.+++++++++++|++....+.+....... ..+++.++....+...+.++........
T Consensus 94 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (536)
T 3ni2_A 94 ASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVKVMCVDSAPDGCLHFSELTQADENEA-- 170 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCEEEESSCCCTTCEETHHHHTSCGGGC--
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-CceEEEecCCCCCccCHHHHhhcccccc--
Confidence 9999999999999999999999999999999999998877776654332 3566776654444455555544332222
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh----ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCc
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH----LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~ 705 (1102)
+.....++|++||+|||||||.||||+++|+++.+.+..... .+++.++|++++.+|++|..++...++.+|..|+
T Consensus 171 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 250 (536)
T 3ni2_A 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGA 250 (536)
T ss_dssp CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTC
T ss_pred ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCC
Confidence 224567899999999999999999999999999887665433 4678899999999999999997788899999999
Q ss_pred eEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcc
Q psy12852 706 SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFY 783 (1102)
Q Consensus 706 ~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 783 (1102)
++++.+++++..+++.|+++++|++.++|+++..|++.... ....+++.+++|||++++++.++|.+.+++++++|.|
T Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 251 PILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp CEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999999887543 2345788899999999999999999999877999999
Q ss_pred ccccCCcccccC--------CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec
Q psy12852 784 GATEGNANLVNM--------DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855 (1102)
Q Consensus 784 G~TE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~ 855 (1102)
|+||++.+++.. ....+++|.+. .+..+.++|+++|.+ +|.|++||++ ++
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----v~ 388 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVV-------RNAEMKIVDPETGAS-----------LPRNQPGEIC----IR 388 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEEC-------SSCEEEEECTTTCCB-----------CCTTCCEEEE----EE
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeC-------CCcEEEEEeCCCCcC-----------CCCCCccEEE----Ee
Confidence 999999765432 11233444432 455677778666644 4788888876 55
Q ss_pred CCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce
Q psy12852 856 DPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE 934 (1102)
Q Consensus 856 G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~ 934 (1102)
|| .++.||+|++ .|.+.|. +++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 389 g~-~v~~GY~~~p~~t~~~~~------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 461 (536)
T 3ni2_A 389 GD-QIMKGYLNDPEATSRTID------KEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISD 461 (536)
T ss_dssp ST-TSCSEETTCHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEE
T ss_pred Cc-ccchhhcCChhHHHhhcc------CCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcce
Confidence 88 5899999997 5555542 37899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 935 FTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 935 a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
|+|++++++. .++..+++++ ..+...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|+++.
T Consensus 462 a~Vv~~~~~~-~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~ 533 (536)
T 3ni2_A 462 AAVVGLKDED-AGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533 (536)
T ss_dssp EEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC-
T ss_pred EEEEeeecCC-CCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHh
Confidence 9999977664 3444444444 334567889999999999999999999999999999999999999999864
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-72 Score=682.26 Aligned_cols=497 Identities=20% Similarity=0.280 Sum_probs=374.4
Q ss_pred cchhhhHHHHHHHHhhcccCCcccchhhcc-----------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHH
Q psy12852 477 LEVDVTYSRFKQEASNARSTNDAAATTVKN-----------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 545 (1102)
Q Consensus 477 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~-----------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv 545 (1102)
++..+..+.|.+ +|+++|+++|+++.+ +|+||+++++++|+.|++.|+++|++|+|+++|++++++
T Consensus 16 ~~~~~l~~~l~~---~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 16 YPKISLADRIDA---AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCTTHHHHH---HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCCCHHHHHHH---HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 334444555555 489999999998776 399999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCC
Q psy12852 546 VWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625 (1102)
Q Consensus 546 ~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1102)
++|||+++|++++|++|.+|.+++.+++++++++++|++....+.+.......+...++..+. ....+.+.......
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 169 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG---EVNSLSEVMDSGSE 169 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC---SSSCHHHHHHHSCS
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC---CCcCHHHHHhcCcc
Confidence 999999999999999999999999999999999999999988887777666555444555443 34456665554333
Q ss_pred CCCCCCCCCCC-CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 626 SEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 626 ~~~~~~~~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
.... ....+ +|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.++..|
T Consensus 170 ~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~-~~~~~~~l~~G 246 (549)
T 3g7s_A 170 DFEN--VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAE-FGLVNLMVTVG 246 (549)
T ss_dssp CCCC--CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHH-HHHHTTHHHHC
T ss_pred cccc--ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHH-HHHHHHHHhcC
Confidence 2111 23334 89999999999999999999999999999999889999999999999999999998 55588999999
Q ss_pred ceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHH----hC-
Q psy12852 705 SSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKR----FH- 775 (1102)
Q Consensus 705 ~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~----~~- 775 (1102)
+++++.+.+++..+++.|+++++|+++++|++++.|+..... ....+++.+++||+++++++.++|.+. ++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~ 326 (549)
T 3g7s_A 247 NEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNN 326 (549)
T ss_dssp CEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSC
T ss_pred ceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999875332 234578888999999999999999987 54
Q ss_pred -cchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEE
Q psy12852 776 -VQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850 (1102)
Q Consensus 776 -~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~g 850 (1102)
..+++|.||+||++++++.... ...++|.+. .++.+.++|+++|. +++.|++|||+
T Consensus 327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~~g~-----------~~~~g~~GEl~- 387 (549)
T 3g7s_A 327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPM-------SDIELKVISLEDGR-----------ELGVGESGEIV- 387 (549)
T ss_dssp TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEEC-------TTCEEEEECSSSCC-----------EECTTCCEEEE-
T ss_pred ccccccceEeccccchhhhcCCccccCcCCCccccC-------CCCEEEEEeCCCCc-----------CCCCCCceEEE-
Confidence 2589999999999987764432 223344432 45566677756554 45888888876
Q ss_pred EEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc
Q psy12852 851 EIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929 (1102)
Q Consensus 851 ei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~ 929 (1102)
+.|| .++.||+|++ .|.++|+.+ .+|++||+|||+|++|+||.|+|+||+|||||++|+||+|.|||++|.+|
T Consensus 388 ---v~g~-~v~~GY~~~~~~t~~~f~~~--~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 388 ---IRGP-NIFKGYWKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp ---EEST-TSCSEETTCTTGGGTSEEEC--TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred ---EECc-chhhhhCCChhhhhhhhhcc--CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 4588 5899999987 676666432 24677999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEcCCCCCceeEEEEEc-CC--CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 930 LPYTEFTVYGVKVGDLDGRAGMIAIVD-TS--NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 930 ~~V~~a~vv~~~~~~~~~~~~l~~~v~-~~--~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
|+|.+|+|++++++. .++...++++. ++ ...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++..
T Consensus 462 p~V~~a~Vv~~~~~~-~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~ 540 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEE-AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKE 540 (549)
T ss_dssp TTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC----------------
T ss_pred CCeeeEEEEeeEccc-cCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHh
Confidence 999999999855443 33444444442 32 457899999999999999999999999999999999999999999876
Q ss_pred CC
Q psy12852 1007 FD 1008 (1102)
Q Consensus 1007 ~~ 1008 (1102)
..
T Consensus 541 ~~ 542 (549)
T 3g7s_A 541 AE 542 (549)
T ss_dssp --
T ss_pred hc
Confidence 54
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-71 Score=662.60 Aligned_cols=479 Identities=22% Similarity=0.257 Sum_probs=393.8
Q ss_pred hcccCCcccchh---hcc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCC
Q psy12852 492 NARSTNDAAATT---VKN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565 (1102)
Q Consensus 492 ~a~~~P~~~Av~---~~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p 565 (1102)
+++++|+++|+. +.+ +|+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|
T Consensus 9 ~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~ 88 (503)
T 4fuq_A 9 LFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88 (503)
T ss_dssp HHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred HHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCC
Confidence 588899999887 232 29999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEEC
Q psy12852 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYT 645 (1102)
Q Consensus 566 ~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~T 645 (1102)
.+++.+++++++++++|++......+..+..... ..+..++... ...+......... ........++|++||+||
T Consensus 89 ~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~T 163 (503)
T 4fuq_A 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-ATVETLGPDG--RGSLTDAAAGASE--AFATIDRGADDLAAILYT 163 (503)
T ss_dssp HHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-CEEEECCTTS--CSHHHHHHHTSCS--CCCCCCCCTTSEEEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-ceEEEecCCc--ccccchhhhcCCC--CcCcCCCCCCCeEEEEEC
Confidence 9999999999999999999877665555443332 2344443221 1112222111111 112245678999999999
Q ss_pred CCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhc
Q psy12852 646 SGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKY 725 (1102)
Q Consensus 646 SGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~ 725 (1102)
|||||.||||+++|+++.+++.+....++++++|++++.+|++|..++...++.+++.|+++++.+++++..+++.++
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~-- 241 (503)
T 4fuq_A 164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA-- 241 (503)
T ss_dssp C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--
T ss_pred CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999999986677888999999999999999999999998
Q ss_pred ccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC---CCCC
Q psy12852 726 KCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD---NTEG 800 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~---~~~~ 800 (1102)
++|+++++|+++..|+...... ...+++.+++|||++++++.++|.+.++. +++|.||+||+++.++... ...+
T Consensus 242 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~ 320 (503)
T 4fuq_A 242 RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETNMNTSNPYDGDRVPG 320 (503)
T ss_dssp TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC-CEEECCEETTTEECBCCCSSSCCCTT
T ss_pred hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC-CccceEcccccCcccccCCCCCCcCC
Confidence 8999999999999998875432 24567888999999999999999999876 8999999999997765332 1233
Q ss_pred cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc
Q psy12852 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF 879 (1102)
Q Consensus 801 ~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~ 879 (1102)
++|.+. .+..+.++|+++|.+ +|.|++||++ +.|| .++.||+|++ .|.++|..
T Consensus 321 ~~G~p~-------~~~~~~i~d~~~g~~-----------~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~~f~~--- 374 (503)
T 4fuq_A 321 AVGPAL-------PGVSARVTDPETGKE-----------LPRGDIGMIE----VKGP-NVFKGYWRMPEKTKSEFRD--- 374 (503)
T ss_dssp EEEEBC-------TTCEEEEECTTTCCB-----------CCTTCCEEEE----EEST-TSCCCBTTCHHHHHHTBCT---
T ss_pred ccccCC-------CCeEEEEEECCCCCC-----------CcCCCceEEE----EECC-chhhhhcCChhhhHhhhCC---
Confidence 444442 355667777665644 4888888876 5588 5899999987 56666632
Q ss_pred CCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCC
Q psy12852 880 KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTS 958 (1102)
Q Consensus 880 ~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~ 958 (1102)
++||+|||+|++++||.|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++++++. .++...++++ ..+
T Consensus 375 ---~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a~v~~~~~ 450 (503)
T 4fuq_A 375 ---DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD-FGEGVTAVVVRDKG 450 (503)
T ss_dssp ---TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT-TEEEEEEEEEECTT
T ss_pred ---CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchh-cCceeEEEEEeCCC
Confidence 68999999999999999999999999999999999999999999999999999999977664 3333333333 344
Q ss_pred CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 959 NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 959 ~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
...+.++++++|+++||.||+|+.|+++++||+|+||||||++|++.+.+
T Consensus 451 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 451 ATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp CCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999988654
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-71 Score=669.63 Aligned_cols=487 Identities=18% Similarity=0.229 Sum_probs=394.4
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +|+++|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 26 tl~~~l~~--~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~v 103 (539)
T 1mdb_A 26 TFGDLLRD--RAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV 103 (539)
T ss_dssp CHHHHHHH--HHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHH--HHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEe
Confidence 34444444 5889999999987654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
|++|.++.+++.+++++++++++|+++... ..+..+....+..+.+.+..... .+.++...... ......
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~ 178 (539)
T 1mdb_A 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---EFLPLEDLHTE--PVKLPE 178 (539)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---TSEEGGGCCCC--CCCCCC
T ss_pred cCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---chhhhhhcccc--ccccCC
Confidence 999999999999999999999999987642 23334434444443333222111 12222221111 111235
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH-HHHhHhhcCceEEEeCC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI-GTIPALILGSSIAIRTK 712 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~i~~~l~~G~~lv~~~~ 712 (1102)
..++|++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++... .++.+|+.|+++++.++
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~ 258 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCC
Confidence 67899999999999999999999999999999988888899999999999999999998444 69999999999999999
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
+++..+++.|+++++|++.++|+++..|++... .....+++.+++|||++++++.++|.+.++. +++|.||+||+++
T Consensus 259 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~ 337 (539)
T 1mdb_A 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFGMAEGLV 337 (539)
T ss_dssp SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEEEEEECTTSCE
T ss_pred CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC-cEEEEEcCCCCcc
Confidence 999999999999999999999999999987542 2334678889999999999999999998865 8999999999776
Q ss_pred ccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 791 NLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 791 ~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
.++..... ..++|.+.+ ....+.++|++ | +++|.|++||++ ++|| .++.||+|
T Consensus 338 ~~~~~~~~~~~~~~~~G~p~~------~~~~~~i~d~~-~-----------~~~~~g~~GEl~----v~g~-~v~~GY~~ 394 (539)
T 1mdb_A 338 NYTRLDDPEEIIVNTQGKPMS------PYDESRVWDDH-D-----------RDVKPGETGHLL----TRGP-YTIRGYYK 394 (539)
T ss_dssp EECCTTSCHHHHHHCCCEESS------TTCEEEEECTT-S-----------CBCCTTCCEEEE----EECT-TSCSSCTT
T ss_pred cccCCCCcHHhcCCCCCcccC------CCceEEEECCC-C-----------CCCcCCCcceEE----eeCc-ccchhhcC
Confidence 55432211 123343321 11245556644 4 345888888866 5588 58999999
Q ss_pred ch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 867 KK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 867 ~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
++ .|.++|.. ++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++++++.
T Consensus 395 ~~~~t~~~f~~------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~- 467 (539)
T 1mdb_A 395 AEEHNAASFTE------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF- 467 (539)
T ss_dssp CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT-
T ss_pred ChhhhhhhccC------CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccc-
Confidence 97 56666643 68999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 946 DGRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 946 ~~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
.++..+++++..+...+.++|+++|+++ ||.||+|+.|+++++||+|+||||||++|++..
T Consensus 468 ~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 529 (539)
T 1mdb_A 468 LGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAI 529 (539)
T ss_dssp TEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHH
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHH
Confidence 3444444444444567889999999998 999999999999999999999999999998753
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-71 Score=666.47 Aligned_cols=495 Identities=23% Similarity=0.260 Sum_probs=393.9
Q ss_pred HhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch-----HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhH
Q psy12852 469 QLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL-----EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 543 (1102)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~-----Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~ 543 (1102)
+++......+...++..+++. +|+++|+++|+++.+. |+||+++++++|+.|++.|+++|++|+|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~--~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 81 (517)
T 3r44_A 4 HHHHHVDDDDKMKNIGWMLRQ--RATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF 81 (517)
T ss_dssp --------CGGGGCHHHHHHH--HHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred cccccCCCcccccCHHHHHHH--HHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH
Confidence 344555556666666666665 6999999999986543 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhcc
Q psy12852 544 VGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKT 622 (1102)
Q Consensus 544 vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 622 (1102)
++++|||+++|++++|++|.+|.+++.+++++++++++|++......+..+....+.. .++.+.. ...+.+....
T Consensus 82 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 157 (517)
T 3r44_A 82 CCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG----ADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----HHHHHHHHHH
T ss_pred HHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC----cccHHHHhhc
Confidence 9999999999999999999999999999999999999999998887777665443321 1111110 0122233332
Q ss_pred CCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 623 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
..... +.....++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.+++
T Consensus 158 ~~~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~~~ 234 (517)
T 3r44_A 158 AAADE--PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAA-LTTVIFSAM 234 (517)
T ss_dssp CCCCC--CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHH-HHHHHHHHH
T ss_pred cCcCC--CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHH-HHHHHHHHh
Confidence 22222 224567899999999999999999999999999999999899999999999999999999998 555555555
Q ss_pred cCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhh
Q psy12852 703 LGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780 (1102)
Q Consensus 703 ~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~ 780 (1102)
.|+++++.+.+++..+++.|+++++|++.++|++++.|...+.. ....+++.+++|||++++++.++|.+. +++++
T Consensus 235 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 235 RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999999999999999999999999999999999999876432 233577888999999999999999886 44899
Q ss_pred hccccccCCcccccCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec
Q psy12852 781 EFYGATEGNANLVNMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855 (1102)
Q Consensus 781 n~YG~TE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~ 855 (1102)
|.||+||+++.++... ...+++|.+. ....+.++|++ |.+ ++.| + |||++.
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~-~~~-----------~~~g-~----GEl~v~ 368 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRAT-------MFTDVAVRGDD-GVI-----------REHG-E----GEVVIK 368 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEEC-------TTEEEEEECTT-SCE-----------ESSE-E----EEEEEE
T ss_pred EeecccccccceeecCCccccccCCCCCcCC-------CCeEEEEECCC-CCC-----------CCCC-C----eEEEEe
Confidence 9999999987665332 2233444432 33445555543 432 3444 4 455577
Q ss_pred CCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce
Q psy12852 856 DPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE 934 (1102)
Q Consensus 856 G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~ 934 (1102)
|| .++.||+++| .|.++|. ++||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 369 g~-~v~~GY~~~p~~t~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 440 (517)
T 3r44_A 369 SD-ILLKEYWNRPEATRDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSE 440 (517)
T ss_dssp ET-TSCSEETTCHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred Cc-chhhhhCCChhhhHhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeE
Confidence 88 5899999997 5555552 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 935 FTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 935 a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
|+|++++++. .++...++++..+...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.
T Consensus 441 ~~Vv~~~~~~-~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 512 (517)
T 3r44_A 441 VAVIGLPDEK-WGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYS 512 (517)
T ss_dssp EEEEEEEETT-TEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHG
T ss_pred EEEEeccccc-cCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHH
Confidence 9999977664 34444444445556788999999999999999999999999999999999999999998753
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-70 Score=655.90 Aligned_cols=472 Identities=21% Similarity=0.254 Sum_probs=380.9
Q ss_pred hcccCCcccchhhc--ch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTVK--NL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~--~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++|+.+. +. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|.
T Consensus 11 ~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~ 90 (504)
T 1t5h_X 11 AATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90 (504)
T ss_dssp HHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCH
T ss_pred HHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccCh
Confidence 58899999999875 32 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEE--cCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccC---CCCCCCCCCCCCCCCeEE
Q psy12852 567 QPLVHSISTVKSKAIIV--SALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT---PASEVKPSEPLQTSDSLL 641 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~ 641 (1102)
+++.+++++++++++|+ +....+.+. ...+..+++.++ ++.... ............+++++|
T Consensus 91 ~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~a~ 157 (504)
T 1t5h_X 91 AELAELIKRGEMTAAVIAVGRQVADAIF---QSGSGARIIFLG----------DLVRDGEPYSYGPPIEDPQREPAQPAF 157 (504)
T ss_dssp HHHHHHHHHTTCSEEEECC--CHHHHHH---HHCCCCEEEEGG----------GTEETTEECCCSCCCCCCCCCTTSEEE
T ss_pred HHHHHHHhhcCCcEEEEecchhhhhhhh---hccccceeEEec----------chhhcCcccccCCccCCCCCCCCCeEE
Confidence 99999999999999999 665444331 112334433322 222111 001111113457899999
Q ss_pred EEECCCCCCCCceEEeccHHHHHhhhhhhhccCC--CCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHH
Q psy12852 642 YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSL--GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYF 719 (1102)
Q Consensus 642 ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~ 719 (1102)
|+|||||||.||||+++|+++.+.+.+....+++ +++|++++.+|++|+.++...++.++..|+++++.+++++..++
T Consensus 158 i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 237 (504)
T 1t5h_X 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237 (504)
T ss_dssp EEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHH
Confidence 9999999999999999999999998888888888 88999999999999999657899999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHHHHhcc-C---CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC
Q psy12852 720 RDCAKYKCNAGIYIGEMCRYLLASK-E---SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795 (1102)
Q Consensus 720 ~~i~~~~vt~~~~~Ps~~~~l~~~~-~---~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 795 (1102)
+.|+++++|+++++|++++.|+... . .....+++.+++|||++++++.++|.+.++. .++|.||+||+++.....
T Consensus 238 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~ 316 (504)
T 1t5h_X 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMR 316 (504)
T ss_dssp HHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS-EEEEEEEETTTEEEEEEE
T ss_pred HHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc-ceeeeecccccccccccc
Confidence 9999999999999999999998754 1 2234678889999999999999999999875 899999999994333322
Q ss_pred CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec-CCcccccccCCch-HHHHH
Q psy12852 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS-DPSRHFYGYADKK-ESQKK 873 (1102)
Q Consensus 796 ~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~-G~~~~~~gY~~~~-~t~~~ 873 (1102)
....++.|.+. ....+.++|++.+ ..++++.|+.||++ +. |+ .++.||+|++ .|.++
T Consensus 317 ~~~~~~~g~p~-------~~~~~~i~~~~~~---------~~~~~~~g~~GEl~----v~gg~-~~~~GY~~~~~~t~~~ 375 (504)
T 1t5h_X 317 QPKTGTEMAPG-------FFSEVRIVRIGGG---------VDEIVANGEEGELI----VAASD-SAFVGYLNQPQATAEK 375 (504)
T ss_dssp SCSSSSEEBCC-------TTCCEEEECTTSC---------TTCBCCTTCCEEEE----EECCT-TSCCCBTTCHHHHHHH
T ss_pred CCCCCccccCC-------CCCceeEEeccCC---------CCCcCCCCCcceEE----EeCCc-eeeceecCCchhhhhh
Confidence 33344455442 2334445554421 12456888888876 44 56 5889999997 56666
Q ss_pred HhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEE
Q psy12852 874 ILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA 953 (1102)
Q Consensus 874 f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~ 953 (1102)
| . ++||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++++++. .++...++
T Consensus 376 f-~------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~-~g~~~~a~ 447 (504)
T 1t5h_X 376 L-Q------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR-WGQSVTAC 447 (504)
T ss_dssp E-E------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSS-SSEEEEEE
T ss_pred h-c------CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCC-CCcEEEEE
Confidence 5 2 57999999999999999999999999999999999999999999999999999999976654 34444444
Q ss_pred EE-cCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 954 IV-DTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 954 ~v-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++ ..+...+.++|++++++ +||.||+|+.|+++++||+|+||||||++|++.+
T Consensus 448 vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 502 (504)
T 1t5h_X 448 VVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (504)
T ss_dssp EEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence 44 23345788999999999 9999999999999999999999999999998753
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-70 Score=665.03 Aligned_cols=495 Identities=20% Similarity=0.234 Sum_probs=382.9
Q ss_pred hHHHHHHHHhhcccCCcccchhhc--------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHc
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVK--------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~--------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~a 553 (1102)
+...+++. +|+++|+++|+++. -+|+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 57 ~~~~~l~~--~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 57 FAYDVVDV--YARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp HHHHTHHH--HHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 33344444 58899999999862 139999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCCchhhhhhhhccCceEEEEcCcch--hHHHHHHhcCCC--ceEEEecCC-CCCCCChhHhhccCCCCCC
Q psy12852 554 GVISALINTNLKKQPLVHSISTVKSKAIIVSALYY--PEIEAIRESIPD--VKLFLLDET-KPDLPNLSDLMKTTPASEV 628 (1102)
Q Consensus 554 G~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 628 (1102)
|++++|++|.++.+++.+++++++++++|++.+.. ..+.......+. ..++.++.. ..++..+.+..........
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence 99999999999999999999999999999988765 555555444433 334444432 2344556555544333221
Q ss_pred CC--CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCce
Q psy12852 629 KP--SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706 (1102)
Q Consensus 629 ~~--~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~ 706 (1102)
.+ .....++|++||+|||||||.||||+++|+++...+......+++.+++++++.+|++|+.+....++.++..|++
T Consensus 215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 11 1246789999999999999999999999999988887777778899999999999999998856678899999999
Q ss_pred EEEe--CCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcc
Q psy12852 707 IAIR--TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFY 783 (1102)
Q Consensus 707 lv~~--~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 783 (1102)
+++. ..+++..+++.|+++++|+++++|++++.|+..... ....+++.+++|||++++++.++|.+.++. +++|.|
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~-~i~~~Y 373 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGF 373 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSC-CCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCC-eEeccc
Confidence 9998 458999999999999999999999999999876432 233578889999999999999999998875 899999
Q ss_pred ccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe-ecCCcc
Q psy12852 784 GATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK-QSDPSR 859 (1102)
Q Consensus 784 G~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~-~~G~~~ 859 (1102)
|+||+++.++..+. ..+++|++. ..+.+.++|++ | +++|.|++|||+++.. +.++ .
T Consensus 374 G~TE~~~~~~~~~~~~~~~~~~G~p~-------~~~~v~ivd~~-g-----------~~~~~g~~GEl~v~~~~g~~~-~ 433 (580)
T 3etc_A 374 GQTETVVTIATFPWMEPKPGSIGKPT-------PGYKIELMDRD-G-----------RLCEVGEEGEIVINTMEGKPV-G 433 (580)
T ss_dssp CCTTSSCCEECCTTSCCCTTCCBEEC-------TTCEEEEECTT-S-----------CBCCTTCCEEEEEECTTCCCT-T
T ss_pred ccccccceeecCCCCCCCCCccccCC-------CCCEEEEECCC-C-----------CCCCCCCceEEEEecCCCCCC-e
Confidence 99999887765432 344555543 34556677765 4 3458899999884411 1114 5
Q ss_pred cccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEE
Q psy12852 860 HFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVY 938 (1102)
Q Consensus 860 ~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv 938 (1102)
++.||+++| .|.+.|. ++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|+
T Consensus 434 ~~~gY~~~p~~t~~~f~-------~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vv 506 (580)
T 3etc_A 434 LFVHYGKDPERTEETWH-------DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAIT 506 (580)
T ss_dssp CCCEETTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEE
T ss_pred eeccccCCHhHHHhhcC-------CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEE
Confidence 889999997 5555552 67999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCceeEEEEEcCCC-c---cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 939 GVKVGDLDGRAGMIAIVDTSN-Q---VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 939 ~~~~~~~~~~~~l~~~v~~~~-~---~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
+++++. .++...++++.... . ...++|+++++++||.||+|+.|+++++||+|+||||||++|+++..
T Consensus 507 g~~~~~-~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 507 GVPDPV-RGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp EEEETT-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------------
T ss_pred eeeccC-CCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 987764 34444444443222 2 23578999999999999999999999999999999999999998753
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-71 Score=670.38 Aligned_cols=492 Identities=17% Similarity=0.213 Sum_probs=311.4
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +|+++|+++|+++.+. |+||+++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++
T Consensus 31 tl~~~l~~--~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 108 (544)
T 3o83_A 31 PLTRILTV--GVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVL 108 (544)
T ss_dssp CTTHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHH--HHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEe
Confidence 34444444 5999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
|+++.++.+++.+++++++++++|++.... .....+....+.. .++..+.. .....+.++....... .....
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 186 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-ATDFGLLDWIETPAET-FVDFS 186 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-TTSEEHHHHHHSCCSS-CCCCC
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-ccccchhhhhhccccc-ccccc
Confidence 999999999999999999999999987654 3334444333333 33333322 1122233333322221 11124
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH-HHHhHhhcCceEEEeC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI-GTIPALILGSSIAIRT 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~i~~~l~~G~~lv~~~ 711 (1102)
...+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++... .++.+|..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 567899999999999999999999999999999999999999999999999999999887443 6899999999999999
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
++++..+++.|+++++|++.++|+++..|++.... ....+++.+++|||++++++.++|.+.++. +++|.||+||++
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~ 345 (544)
T 3o83_A 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KLQQVFGMAEGL 345 (544)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS-EEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC-cEEeeecccccc
Confidence 99999999999999999999999999999876543 234578889999999999999999999865 899999999998
Q ss_pred cccccCCCCC----CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 790 ANLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 790 ~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
+.++...... .++|.+. . ....+.++|++ |. ++|.|++||++ ++|| .++.||+
T Consensus 346 ~~~~~~~~~~~~~~~~~G~p~-----~-~~~~~~i~d~~-~~-----------~~~~g~~GEl~----v~g~-~v~~GY~ 402 (544)
T 3o83_A 346 VNYTRLDDSDEQIFTTQGRPI-----S-SDDEIKIVDEQ-YR-----------EVPEGEIGMLA----TRGP-YTFCGYY 402 (544)
T ss_dssp EEECCTTSCHHHHHHCCCEES-----C-TTCEEEEECTT-SC-----------BCCTTCCEEEE----EECT-TSCSCCT
T ss_pred ceeecCCCchhhccCCCceec-----C-CCcEEEEECCC-CC-----------CCCCCCeeEEE----EecC-Ccchhhc
Confidence 6655433211 2233321 1 33455566643 43 45888888876 5588 4889999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
+++ .|.++|. .++||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++++++.
T Consensus 403 ~~~~~t~~~f~------~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 476 (544)
T 3o83_A 403 QSPEHNSQVFD------EDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQ 476 (544)
T ss_dssp TCHHHHHHHBC------TTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------------
T ss_pred CChhhhhhhCC------CCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCC
Confidence 997 5666653 278999999999999999999999999999999999999999999999999999999866554
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
.++..+++++..+...+.+++++++++ +||.||+|+.|+++++||+|+||||||++|+++...
T Consensus 477 -~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 477 -FGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------------------
T ss_pred -CCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 344445555544455778889999999 799999999999999999999999999999987543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-71 Score=671.72 Aligned_cols=476 Identities=17% Similarity=0.171 Sum_probs=307.9
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
.+++.+++. +|+++|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 75 ~~l~~~l~~--~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 75 ACVHELFEA--QAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHH--HHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 345555554 6999999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
+|++|.++.+++.+++++++++++|++...... +.....+.+.+.. ... ...........++
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~ 214 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEA---------ASD--APAGNLATGVGPE 214 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC------------------CCCCCCCCCTT
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeeccc---------ccc--ccccccCCCCCCC
Confidence 999999999999999999999999998765432 2222222222110 000 0111122456789
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC--CCH
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK--FSA 715 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~--~~~ 715 (1102)
|++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++++|++|+.+ .+.++.+++.|+++++.+. +++
T Consensus 215 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~v~~~~~~~~~ 292 (570)
T 4gr5_A 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAF-GLELFGALLFGARCVLQSGQNPDP 292 (570)
T ss_dssp SEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTH-HHHHHHHHTTTCEEEECSSSSCCH
T ss_pred CeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHH-HHHHHHHHhcCCEEEEcCCccCCH
Confidence 9999999999999999999999999887665 45678999999999999999876 7889999999999999874 789
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 795 (1102)
..+++.|+++++|++.++|++++.|++... ....+++.+++|||++++++.+++.+.+++++++|.||+||++++++..
T Consensus 293 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 371 (570)
T 4gr5_A 293 LEIGELVARHGVTMLQLSASLFNFLVDEVP-EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHH 371 (570)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHHHHcCCcEEEecHHHHHHHHhhch-hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeee
Confidence 999999999999999999999999987543 3456789999999999999999999999877999999999998876543
Q ss_pred CC-------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch
Q psy12852 796 DN-------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868 (1102)
Q Consensus 796 ~~-------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~ 868 (1102)
.. ...++|.+. ....+.++|++ |. +++.|++|||+ ++|| .++.||++++
T Consensus 372 ~~~~~~~~~~~~~iG~p~-------~~~~v~i~d~~-~~-----------~~~~G~~GEl~----v~g~-~v~~GY~~~~ 427 (570)
T 4gr5_A 372 AVVAGDLSGTALPIGVPL-------AGKRAYVLDDD-LK-----------PAANGALGELY----VAGA-GLAHGYVSRP 427 (570)
T ss_dssp ECCGGGTTSSSCCCBEEC-------TTEEEEEECTT-SC-----------BCCTTCEEEEE----EEET-TCCCEETTCH
T ss_pred eecccccCCCccccceee-------CCCEEEEECCC-CC-----------CCCCCCcEEEE----Eeec-ccchhcCCCc
Confidence 22 112233332 45566667754 43 45778877766 5588 5899999987
Q ss_pred -HHHHHHhhcccC--CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 869 -ESQKKILENVFK--PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 869 -~t~~~f~~~~~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
.|.++|..+++. ++++||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++.
T Consensus 428 ~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~- 506 (570)
T 4gr5_A 428 ALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRL- 506 (570)
T ss_dssp HHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------------
T ss_pred hhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCC-
Confidence 788889887774 4679999999999999999999999999999999999999999999999999999999855443
Q ss_pred CCceeEEEEEcC---CCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 946 DGRAGMIAIVDT---SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 946 ~~~~~l~~~v~~---~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
+...++++++. ....+.++|+++|+++||.||+|..|+++++||+|+||||||++|++.
T Consensus 507 -~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 507 -GDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------------
T ss_pred -CCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 33344444432 234678899999999999999999999999999999999999999875
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-69 Score=653.77 Aligned_cols=483 Identities=19% Similarity=0.229 Sum_probs=394.0
Q ss_pred hcccCCcccchhhc--c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTVK--N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~--~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+++++ +++|+++. + +|+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+++|++++|++|.++.
T Consensus 35 ~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~ 113 (548)
T 2d1s_A 35 RYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113 (548)
T ss_dssp HHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCH
T ss_pred hhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCH
Confidence 37778 99999862 2 299999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCC-CceEEEecCCC--CCCCChhHhhccCCCCCCCCCCCC------CCC
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETK--PDLPNLSDLMKTTPASEVKPSEPL------QTS 637 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 637 (1102)
+++.+++++++++++|++....+.+.......+ ...++.++... .....+.++........... ... .++
T Consensus 114 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 192 (548)
T 2d1s_A 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQA-SSFKTVEVDRKE 192 (548)
T ss_dssp HHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCG-GGCCCCCCCTTT
T ss_pred HHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCc-ccccccccCCCC
Confidence 999999999999999999988777666554444 24555554321 11233555544321110100 111 238
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc---cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCC
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFS 714 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~ 714 (1102)
+++||+|||||||.||||++||+++.+.+.+.... ++++++|++++++|++|+.++...++.++ .|+++++.++++
T Consensus 193 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~ 271 (548)
T 2d1s_A 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFD 271 (548)
T ss_dssp CEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCC
T ss_pred CEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCC
Confidence 99999999999999999999999999988777766 78899999999999999998545567777 999999999999
Q ss_pred HhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccc
Q psy12852 715 ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792 (1102)
Q Consensus 715 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 792 (1102)
+..+++.|+++++|+++++|++++.|++..... ...+++.+++|||++++++.++|.+.+++.+++|.||+||++..+
T Consensus 272 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 351 (548)
T 2d1s_A 272 EETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI 351 (548)
T ss_dssp HHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEE
T ss_pred HHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeecccccccccee
Confidence 999999999999999999999999998765432 345778889999999999999999999777899999999998776
Q ss_pred ccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-
Q psy12852 793 VNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK- 868 (1102)
Q Consensus 793 ~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~- 868 (1102)
+.... ..+++|.+. ....+.++|+++|.+ ++.|+.||++ ++|| .++.||++++
T Consensus 352 ~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----v~g~-~v~~GY~~~~~ 408 (548)
T 2d1s_A 352 IITPEGDDKPGASGKVV-------PLFKAKVIDLDTKKS-----------LGPNRRGEVC----VKGP-MLMKGYVNNPE 408 (548)
T ss_dssp EECCTTCCCTTCCBEEC-------TTCEEEEECTTTCCB-----------CCTTCCEEEE----EEST-TSCSEETTCHH
T ss_pred eecCcccCCCCCCCccC-------CCceEEEEeCCcCcc-----------CCCCCCeEEE----ECCH-HHhhhhcCChH
Confidence 54322 223444432 344566677555543 4778888766 5588 5899999997
Q ss_pred HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCc
Q psy12852 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGR 948 (1102)
Q Consensus 869 ~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~ 948 (1102)
.|.+.|. .++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++
T Consensus 409 ~t~~~f~------~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~-~g~ 481 (548)
T 2d1s_A 409 ATKELID------EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPV-AGE 481 (548)
T ss_dssp HHHHHBC------TTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETT-TEE
T ss_pred Hhhhccc------CCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC-CCe
Confidence 5666553 268999999999999999999999999999999999999999999999999999999977654 334
Q ss_pred eeEEEEE-cCCCccCHHHHHHHHHccCCCCCcce-EEEEecCccCCCCccchhhhhhhcCC
Q psy12852 949 AGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPL-FVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 949 ~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~-~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
...++++ ..+...+.++|+++|+++||.||+|. .|+++++||+|+||||||++|++...
T Consensus 482 ~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~ 542 (548)
T 2d1s_A 482 LPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542 (548)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHH
T ss_pred eeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHh
Confidence 3344443 33345788999999999999999999 99999999999999999999998653
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=669.32 Aligned_cols=540 Identities=16% Similarity=0.178 Sum_probs=411.5
Q ss_pred hhhHHHHHHHHhhccCCCcccccccc--cccCHHHHHHHHHHhhc----c-ccccchh--hhHHHHHHHHhhcccCCccc
Q psy12852 430 DKSNHVIEKQAINFDQQDEEYVIDEA--ALLDEEEMTEFVRQLQS----K-IEQLEVD--VTYSRFKQEASNARSTNDAA 500 (1102)
Q Consensus 430 ~~~~~~l~~~~~~~~~~~p~~~l~~l--~~l~~~~~~~~~~~~~~----~-~~~~~~~--~~~~~~~~~~~~a~~~P~~~ 500 (1102)
.+|..+++..+. ||+...+++ .+......++++. ++. . ...++.. .+++.+++. +++++|+++
T Consensus 22 ~~y~~l~~~~~~-----~p~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wf~~~~~n~~~~~l~~--~a~~~pd~~ 93 (652)
T 1pg4_A 22 EQYETKYKQSIN-----DPDTFWGEQGKILDWITPYQKVKN-TSFAPGNVSIKWYEDGTLNLAANCLDR--HLQENGDRT 93 (652)
T ss_dssp HHHHHHHHHHHH-----CHHHHHHHHGGGSCCSBCCSCCEE-EECCTTCCEEEESTTCEECHHHHHTGG--GHHHHTTSE
T ss_pred HHHHHHHHHHhc-----CHHHHHHHHHhhCceecCCccccc-CccccCCCCCEECCCCChhHHHHHHHH--HhccCCCce
Confidence 478889998888 888765544 2211111111111 111 0 0111111 234444433 578899999
Q ss_pred chhhc------c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhh
Q psy12852 501 ATTVK------N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVH 571 (1102)
Q Consensus 501 Av~~~------~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~ 571 (1102)
|+++. . +|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+
T Consensus 94 Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~ 173 (652)
T 1pg4_A 94 AIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 173 (652)
T ss_dssp EEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Confidence 99862 1 29999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceEEEEcCcch---------hHHHHHHhcCC--C-ceEEEecCCCC-------CCCChhHhhccCCCCCCCCCC
Q psy12852 572 SISTVKSKAIIVSALYY---------PEIEAIRESIP--D-VKLFLLDETKP-------DLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 572 il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
++++++++++|+++... +.+.......+ . .++++++.... ....+.++....... ....
T Consensus 174 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 251 (652)
T 1pg4_A 174 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE--HQPE 251 (652)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSC--CCCC
T ss_pred HHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCC--CCcc
Confidence 99999999999987643 23344433322 2 34555543211 112244444332211 1223
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh-hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
...++|++||+|||||||+||||+++|+++...+ ......++++++|++++.+|++|+.+..+.++.+|+.|+++++.+
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 5578999999999999999999999999988765 345567899999999999999999996689999999999999987
Q ss_pred C----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCc--chhhh
Q psy12852 712 K----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHV--QTIIE 781 (1102)
Q Consensus 712 ~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~--~~l~n 781 (1102)
. +++..+++.|+++++|+++++|++++.|++.... ....++|.+++|||+++++++++|.+.++. ++++|
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 411 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc
Confidence 5 5899999999999999999999999999876531 234578888999999999999999998872 58999
Q ss_pred ccccccCCcccccCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecC
Q psy12852 782 FYGATEGNANLVNMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856 (1102)
Q Consensus 782 ~YG~TE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G 856 (1102)
.||+||++..++... ...+++|.+. .++.+.++|++ |. +++.|++||++ +.|
T Consensus 412 ~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~-------~g~~v~i~d~~-g~-----------~v~~g~~GEl~----i~g 468 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGAIELKAGSATRPF-------FGVQPALVDNE-GH-----------PQEGATEGNLV----ITD 468 (652)
T ss_dssp EBCCGGGSSCSBCCCTTTCCBCTTCCBSBC-------TTCCEEEECTT-CC-----------BCCSSEEEEEE----ECS
T ss_pred cccCcccccceecCCCCCcCccCCccccCc-------CCCeEEEECCC-CC-----------CcCCCceEEEE----Ecc
Confidence 999999997665432 1233444432 34556666754 43 34666666654 668
Q ss_pred C-cccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce
Q psy12852 857 P-SRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE 934 (1102)
Q Consensus 857 ~-~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~ 934 (1102)
| ..++.||++++ .+.+.|+. ..++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~e 544 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAE 544 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 4 25899999997 44455543 236799999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEEc-C-CCccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 935 FTVYGVKVGDLDGRAGMIAIVD-T-SNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 935 a~vv~~~~~~~~~~~~l~~~v~-~-~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|+|++++++. .++ .++++++ . +...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++....
T Consensus 545 a~Vvg~~~~~-~g~-~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 545 AAVVGIPHAI-KGQ-AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEEEEEETT-TEE-EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEEEEEcCC-CCe-EEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 9999977654 333 4444443 2 22222 5789999999999999999999999999999999999999987644
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-70 Score=658.48 Aligned_cols=485 Identities=18% Similarity=0.228 Sum_probs=309.3
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..+++. +|+++|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|
T Consensus 8 l~~~l~~--~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 8 LADVYRR--NAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP 85 (509)
T ss_dssp HHHHHHH--HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHH--HHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEe
Confidence 3344444 5999999999998765 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSD 638 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1102)
++|.+|.+++.+++++++++++|++......+.......+.. .++.++... ..+......... .........++|
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~d 161 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS---GPFAPFKDLASD-TPFSAPEFGAAD 161 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC---SSCEEGGGTCCC-SCCCCCCCCTTS
T ss_pred cCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC---cChhhHhhccCC-CCCCcCCCCccc
Confidence 999999999999999999999999998877755555555543 344444321 122222221111 112224677899
Q ss_pred eEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHH
Q psy12852 639 SLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNY 718 (1102)
Q Consensus 639 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l 718 (1102)
++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.+++.|++.++...+++..+
T Consensus 162 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (509)
T 3ivr_A 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG-LGLMLTLQQAGGASVIAAKFDPAQA 240 (509)
T ss_dssp EEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH-HHHHHHHHHHTCEEEECSSCCHHHH
T ss_pred cEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhH-HHHHHHHHHhCCcEEEecccCHHHH
Confidence 999999999999999999999999999999999999999999999999999998 6666666677777777778999999
Q ss_pred HHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC-
Q psy12852 719 FRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN- 797 (1102)
Q Consensus 719 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~- 797 (1102)
++.|+++++|++.++|+++..|+.........+++.++.+|++ +..+++.+.+++++++|.||+||++++++....
T Consensus 241 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 317 (509)
T 3ivr_A 241 ARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR 317 (509)
T ss_dssp HHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG
T ss_pred HHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc
Confidence 9999999999999999999999987755556677887888887 889999999977799999999999987664322
Q ss_pred -CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHh
Q psy12852 798 -TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKIL 875 (1102)
Q Consensus 798 -~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~ 875 (1102)
....+|.+. ....+.++|++ |. ++|.|++||++ +.|| .++.||++++ .|.++|.
T Consensus 318 ~~~~~~G~p~-------~~~~~~i~d~~-~~-----------~~~~g~~GEl~----v~g~-~~~~gY~~~~~~t~~~f~ 373 (509)
T 3ivr_A 318 DRPKSAGRPL-------FWRTVAVVDAE-DR-----------PLPPGEVGEIV----LRGP-TVFKGYWNNAAATQHAFR 373 (509)
T ss_dssp GSTTSCCEEC-------TTCEEEEECTT-SC-----------BCCTTCCEEEE----EEST-TSCCEETTCHHHHHHHTG
T ss_pred cCCCcccccC-------CCcEEEEECCC-CC-----------CCCCCCceEEE----EecC-CccccccCCHHHhHHHhh
Confidence 222344432 34556667755 43 45888888876 4588 5889999987 5666663
Q ss_pred hcccCCCCeEEEecceeEEecCccEEEEccC--CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEE
Q psy12852 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRT--GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA 953 (1102)
Q Consensus 876 ~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~--dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~ 953 (1102)
++||+|||+|++++||+++|+||+ ||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++...++
T Consensus 374 -------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a~ 445 (509)
T 3ivr_A 374 -------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQ-WSEAIKAV 445 (509)
T ss_dssp -------GGSEEEEEEEEECTTSCEEEEEEC-------------------------------------------------
T ss_pred -------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccc-cCcEEEEE
Confidence 579999999999999999999999 99999999999999999999999999999999866554 23333333
Q ss_pred EE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCC
Q psy12852 954 IV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009 (1102)
Q Consensus 954 ~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~ 1009 (1102)
++ .++...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++...+.
T Consensus 446 v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 446 CVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ---------------------------------------------------------
T ss_pred EEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 33 334457788999999999999999999999999999999999999999886553
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-70 Score=661.68 Aligned_cols=496 Identities=19% Similarity=0.267 Sum_probs=309.7
Q ss_pred hhhHHHHHHHHhhcccCCcccchh---h--cc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHH
Q psy12852 480 DVTYSRFKQEASNARSTNDAAATT---V--KN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551 (1102)
Q Consensus 480 ~~~~~~~~~~~~~a~~~P~~~Av~---~--~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l 551 (1102)
.+..+.|.+ +++++|+++|++ + .+ +|+||+++++++|++|++.|+++||+|+|+++|++++++++|||+
T Consensus 20 ~tl~~~l~~---~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 20 GTAGEQLHK---AMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp SCHHHHHHH---HHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred CCHHHHHHH---HHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 344444544 588999999975 2 22 399999999999999999999999999999999999999999999
Q ss_pred HcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCC--CCCCChhHhhccCCCC--
Q psy12852 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETK--PDLPNLSDLMKTTPAS-- 626 (1102)
Q Consensus 552 ~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~-- 626 (1102)
++|++++|++|.++.+++.+++++++++++|++....+.+.......+.. .++.++... .....+.++.......
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGF 176 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTC
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccc
Confidence 99999999999999999999999999999999999888877776666653 344443321 2334444444322111
Q ss_pred ---CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc---cCCCCCcEEEEecCchhhhhHHHHHHhH
Q psy12852 627 ---EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---LSLGSGDVIYNCLPMYHSAGGLIGTIPA 700 (1102)
Q Consensus 627 ---~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~i~~~ 700 (1102)
...+.....+++++||+|||||||.||||+++|+++.+.+.+.... +++.++|++++.+|++|+.+ ++.++.+
T Consensus 177 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g-~~~~~~~ 255 (550)
T 3rix_A 177 NEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG-MFTTLGY 255 (550)
T ss_dssp CTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHH-HHHHHHH
T ss_pred cccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHH-HHHHHHH
Confidence 1111123346789999999999999999999999999887766654 57889999999999999998 7788999
Q ss_pred hhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcch
Q psy12852 701 LILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT 778 (1102)
Q Consensus 701 l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~ 778 (1102)
++.|+++++.+++++..+++.|+++++|+++++|+++..|+...... ...+++.+++|||++++++.++|.+.++...
T Consensus 256 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 335 (550)
T 3rix_A 256 LICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG 335 (550)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred HHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998875432 3457888899999999999999999998756
Q ss_pred hhhccccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec
Q psy12852 779 IIEFYGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855 (1102)
Q Consensus 779 l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~ 855 (1102)
++|.||+||+++.++.... ..+++|.+. ....+.++|+++|.+ ++.|++||++ ++
T Consensus 336 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----v~ 393 (550)
T 3rix_A 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVV-------PFFEAKVVDLDTGKT-----------LGVNQRGELC----VR 393 (550)
T ss_dssp CEEEEECGGGSSEEEECCTTCCCTTEEEEEC-------TTCEEEEECTTTCCB-----------CCTTCCEEEE----EE
T ss_pred cccccCcCccccceecCCCCCCCCCCccccc-------CCcEEEEEeCCCCcC-----------CCCCCCeEEE----Ee
Confidence 9999999999987765433 234445443 345666777665644 4788888866 55
Q ss_pred CCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCccee
Q psy12852 856 DPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEF 935 (1102)
Q Consensus 856 G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a 935 (1102)
|| .++.||++++..+..++. .++||+|||+|++++||+++|+||+|||||++|+||+|.|||++|.+||+|.+|
T Consensus 394 g~-~v~~GY~~~~~~t~~~~~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a 467 (550)
T 3rix_A 394 GP-MIMSGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 467 (550)
T ss_dssp ST-TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEC--------------------------------
T ss_pred CC-CcchhhcCChhhhhhhcC-----CCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceE
Confidence 88 589999999844444332 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCc-ceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 936 TVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYAR-PLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~-P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+|++++++. .++...++++ ..+...+.++++++++++|+.|+. |..|+++++||+|+||||||++|+++..+
T Consensus 468 ~vv~~~~~~-~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 468 GVAGLPDDD-AGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEeecCC-CCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHh
Confidence 999866554 3333333333 334457788999999999999855 55799999999999999999999987654
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-70 Score=657.44 Aligned_cols=485 Identities=18% Similarity=0.221 Sum_probs=353.3
Q ss_pred HHHHHHHHhhcccCCcccchhh----cc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 483 YSRFKQEASNARSTNDAAATTV----KN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~----~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+..+++. +|+++|+++|+++ .+ +|+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+
T Consensus 20 l~~~l~~--~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 97 (541)
T 1v25_A 20 LWDFLER--AAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA 97 (541)
T ss_dssp THHHHHH--HHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--HHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 3344444 5889999999983 22 2999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCce-EEEecCCCC-CCCChhHhhccCCCCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLDETKP-DLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
+++|++|.++.+++.+++++++++++|++....+.+..+...++... ++.++...+ ....+.+........ ..
T Consensus 98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 172 (541)
T 1v25_A 98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP-----VR 172 (541)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCC-----CC
T ss_pred EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCc-----cc
Confidence 99999999999999999999999999999988777777666555543 444443221 222344443322111 34
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhh--hhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV--GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
..+++++||+|||||||.||||++||+++.+.... ....++++++|++++.+|++|..+ +..++.+++.|+++++.+
T Consensus 173 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~-~~~~~~~l~~G~~~v~~~ 251 (541)
T 1v25_A 173 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA-WCLPYAATLVGAKQVLPG 251 (541)
T ss_dssp CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH-HTHHHHHHHHTCEEEECT
T ss_pred CCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhH-HHHHHHHHhcCceEEeeC
Confidence 56789999999999999999999999999877655 345678899999999999999988 567888999999999987
Q ss_pred C-CCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccC
Q psy12852 712 K-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEG 788 (1102)
Q Consensus 712 ~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 788 (1102)
. +++..+++.|+++++|+++++|+++..|++.... ....+++.+++|||++++++.++| +.++. +++|.||+||+
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~-~~~~~YG~TE~ 329 (541)
T 1v25_A 252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV-EVRQGYGLTET 329 (541)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTC-EEEEEEECGGG
T ss_pred CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCC-ceeeccccccc
Confidence 5 7999999999999999999999999999775432 234578888999999999999999 66654 89999999999
Q ss_pred CcccccCCCC--------------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC--CCCcceEEEE
Q psy12852 789 NANLVNMDNT--------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY--NQPGMIIGEI 852 (1102)
Q Consensus 789 ~~~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~--g~~Gel~gei 852 (1102)
+.+++..... ..++|.+. ..+.+.++|++ |.++ +. ++.|| |
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~-g~~~-----------~~~~~~~GE----l 386 (541)
T 1v25_A 330 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI-------PLVRLRVADEE-GRPV-----------PKDGKALGE----V 386 (541)
T ss_dssp SSEEEECCCCGGGTTSCHHHHHHHHTSCBEEC-------TTCEEEEECTT-SCBC-----------CSSSCCCEE----E
T ss_pred ccceecccccccccccCccccccccCCCCCcC-------CCcEEEEECCC-CCCC-----------CCCCCcceE----E
Confidence 9776544221 12233332 34556667755 4433 32 24555 5
Q ss_pred eecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCC
Q psy12852 853 KQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931 (1102)
Q Consensus 853 ~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~ 931 (1102)
+++|| .++.||++++ .|.++|.. ++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+
T Consensus 387 ~v~g~-~v~~GY~~~p~~t~~~f~~------~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~ 459 (541)
T 1v25_A 387 QLKGP-WITGGYYGNEEATRSALTP------DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPK 459 (541)
T ss_dssp EEEST-TSBSSCBTCHHHHHTTBCT------TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC------
T ss_pred EEeCc-chhccccCChhhhhhhccC------CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCC
Confidence 56799 5899999997 45555532 6799999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 932 YTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 932 V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|.+|+|++++++. .++..+++++..+...+.+++++++++ +||.||+|+.|+++++||+|+||||||++|++.+.+
T Consensus 460 V~~a~Vv~~~~~~-~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 460 VKEAAVVAIPHPK-WQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ----CEEEEECSS-SSEEEEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred ceEEEEEEecCCC-cCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 9999999977654 234444333333445677899999999 999999999999999999999999999999987644
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-70 Score=707.06 Aligned_cols=548 Identities=20% Similarity=0.227 Sum_probs=326.5
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.-+|+..+++..+ +++++.++..+++.+.. .++.+..+..+.+. .+...+|...+++.++..
T Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~p~~~tl~~~l~~- 69 (979)
T 3tsy_A 8 HHHSSGLVPRGSH-MARMAPQEQAVSQVMEK-----QSNNNNSDVIFRSK-----------LPDIYIPNHLSLHDYIFQ- 69 (979)
T ss_dssp -------------------------------------------CCCBCCS-----------SCCCCCCTTSCHHHHHTT-
T ss_pred cccccCcccCcch-hhhhhhHHHHHHHhhhh-----cccCCCCCceeecC-----------CCCCCCCCCCCHHHHHHH-
Confidence 4468888999999 99999999888887766 33333322222111 122344544556666655
Q ss_pred hhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCC
Q psy12852 491 SNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p 565 (1102)
+++++|+++|+++.. +|+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|
T Consensus 70 -~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~ 148 (979)
T 3tsy_A 70 -NISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148 (979)
T ss_dssp -TGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSC
T ss_pred -HHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 799999999998752 39999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC-----CCCCChhHhhccCCCC-CCCCCCCCCCCCe
Q psy12852 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK-----PDLPNLSDLMKTTPAS-EVKPSEPLQTSDS 639 (1102)
Q Consensus 566 ~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 639 (1102)
.+++.+++++++++++|++....+.+..+.... ...++.++... .....+.++....... .........++|+
T Consensus 149 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (979)
T 3tsy_A 149 PAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDV 227 (979)
T ss_dssp HHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSE
T ss_pred HHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-CceEEEeCCcccccCCcccccHHHHhhccccccccCCcCCCCccce
Confidence 999999999999999999998877666654432 34555555421 1122233332221110 1112245678999
Q ss_pred EEEEECCCCCCCCceEEeccHHHHHhhhhhhh----ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 640 LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH----LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 640 a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
+||+|||||||+||||+++|+++.+.+..... .+++.++|++++.+|++|+.++...++.+|..|+++++.+++++
T Consensus 228 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~ 307 (979)
T 3tsy_A 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEI 307 (979)
T ss_dssp EECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCH
T ss_pred EEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCH
Confidence 99999999999999999999999987765443 56788999999999999999977888999999999999999999
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 793 (1102)
..+++.|+++++|++.++|+++..|+...... ...+++.+++|||++++++.++|.+.+|+++++|.||+||++++++
T Consensus 308 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 387 (979)
T 3tsy_A 308 NLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLA 387 (979)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEE
T ss_pred HHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHH
Confidence 99999999999999999999999998875433 3457888899999999999999999998779999999999997654
Q ss_pred cCC--------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 794 NMD--------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 794 ~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
... ...+++|.+. .+..+.++|+++|.+ ++.|++|||+ +.|| .++.||+
T Consensus 388 ~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----i~g~-~v~~GY~ 444 (979)
T 3tsy_A 388 MSLGFAKEPFPVKSGACGTVV-------RNAEMKIVDPDTGDS-----------LSRNQPGEIC----IRGH-QIMKGYL 444 (979)
T ss_dssp ECGGGSSSCCCCCTTCCCEEC-------SSCEEEEECTTSCCB-----------CCTTCCEEEE----EEST-TSCSEET
T ss_pred hCCCCCCCccccCCCCcCccc-------CCcEEEEEeCCCCCC-----------CCCCCccEEE----EECC-Ccccccc
Confidence 321 1223344432 456677788776644 4788888866 5588 5899999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
|+| .|.++|. +++||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++++++.
T Consensus 445 ~~p~~t~~~f~------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~ 518 (979)
T 3tsy_A 445 NNPAATAETID------KDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEA 518 (979)
T ss_dssp TCHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------
T ss_pred CChhhhhhhcc------CCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccC
Confidence 997 5655553 378999999999999999999999999999999999999999999999999999999866543
Q ss_pred CCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 945 LDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 945 ~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
.++..+++++ ..+...+.++|+++|+++||.||+|..|+++++||+|+||||||++|++...+
T Consensus 519 -~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 519 -AGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp -----------------------------------------------------------------
T ss_pred -CCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 3333333333 23345678899999999999999999999999999999999999999987654
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-69 Score=646.90 Aligned_cols=474 Identities=18% Similarity=0.237 Sum_probs=383.7
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+++|+++|+++.+. |+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|++|.+|.++
T Consensus 10 ~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~ 89 (512)
T 3fce_A 10 WAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADR 89 (512)
T ss_dssp HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHH
T ss_pred HHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHH
Confidence 5899999999998765 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.+++++++++++|++...... .. ...++..+ .+.............+.....+++++||+|||||
T Consensus 90 l~~il~~~~~~~~i~~~~~~~~------~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGT 155 (512)
T 3fce_A 90 VQRIAENSGAKLLLSATAVTVT------DL-PVRIVSED-------NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGS 155 (512)
T ss_dssp HHHHHHHSCCCEEEESSCCCSS------CC-SSEEEETH-------HHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC-
T ss_pred HHHHHHhcCCCEEEecCccccc------cc-ccceechh-------hhhhhcccccccCCCccccCCCCCeEEEEECCCC
Confidence 9999999999999998543210 01 12222111 1222222222222222245678999999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhhc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKY 725 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~~ 725 (1102)
||.||||+++|+++.+.+.+....++++++|++++++|++|+.+ +..++.+++.|+++++.++ +++..+++.++++
T Consensus 156 TG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~ 234 (512)
T 3fce_A 156 TGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLS-VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQS 234 (512)
T ss_dssp ---CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGG-HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHH
T ss_pred CCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHH-HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998 7889999999999999986 7899999999999
Q ss_pred ccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC------
Q psy12852 726 KCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN------ 797 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~------ 797 (1102)
++|++.++|+++..++..... ....+++.+++|||++++++.++|.+.+++++++|.||+||+++.++....
T Consensus 235 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 235 DIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp CCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred CCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 999999999999998876543 234577888999999999999999999987799999999999987764322
Q ss_pred --CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHH
Q psy12852 798 --TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKI 874 (1102)
Q Consensus 798 --~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f 874 (1102)
....+|.+. ....+.++|++ |. +++.|++||++ +.|| .++.||++++ .|.+.|
T Consensus 315 ~~~~~~~G~~~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~~f 370 (512)
T 3fce_A 315 QYKSLPVGYCK-------SDCRLLIMKED-GT-----------IAPDGEKGEIV----IVGP-SVSVGYLGSPELTEKAF 370 (512)
T ss_dssp HCSSCCCEEEC-------TTCEEEEECSS-SC-----------BCCTTSCEEEE----EEST-TSCSCBTTCHHHHHHHE
T ss_pred ccCCCcccccc-------CCcEEEEECCC-CC-----------CCCCCCeEEEE----Eecc-ccChhhcCCchhhhhcc
Confidence 222334332 34556666644 43 45788888866 5588 5889999997 566666
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
.. .++++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. ....++++
T Consensus 371 ~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~--~~~~~~a~ 444 (512)
T 3fce_A 371 TM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE--KYDYLLAV 444 (512)
T ss_dssp EE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETT--EEEEEEEE
T ss_pred cc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCC--CceEEEEE
Confidence 42 246899999999999 7999999999999999999999999999999999999999999876553 33344444
Q ss_pred EcC-CCc-cC----HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCC
Q psy12852 955 VDT-SNQ-VD----LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPS 1010 (1102)
Q Consensus 955 v~~-~~~-~~----~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~ 1010 (1102)
+.. +.. .+ .++|+++|+++||.||+|..|+++++||+|+||||||++|++...+..
T Consensus 445 vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 445 VVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp EEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred EecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 432 222 12 357999999999999999999999999999999999999998765533
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-68 Score=646.58 Aligned_cols=480 Identities=20% Similarity=0.219 Sum_probs=389.5
Q ss_pred CCcccchhhc------c--hHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 496 TNDAAATTVK------N--LEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 496 ~P~~~Av~~~------~--~Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++. . +|+||+++++++|++|++. |+++|++|+|+++|++++++++|||+++|++++|++|.++.
T Consensus 56 ~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~ 135 (570)
T 3c5e_A 56 RPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135 (570)
T ss_dssp SCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCH
T ss_pred CCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCH
Confidence 9999999862 1 2999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecC-CCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEE
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDE-TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIY 644 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~ 644 (1102)
+++.+++++++++++|++....+.+..+....+.. .++.++. ...+...+.++......... .....++|++||+|
T Consensus 136 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~ 213 (570)
T 3c5e_A 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHH--CVETGSQEASAIYF 213 (570)
T ss_dssp HHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCCC--CCCCBTTSEEEEEE
T ss_pred HHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhccccccc--ccCCCCCCcEEEEE
Confidence 99999999999999999998887777666555554 3444443 11233345555443322211 13467899999999
Q ss_pred CCCCCCCCceEEeccHHHHH-hhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC--CCCHhHHHHH
Q psy12852 645 TSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT--KFSASNYFRD 721 (1102)
Q Consensus 645 TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~--~~~~~~l~~~ 721 (1102)
||||||.||||+++|+.+.+ ..... ..++++++|++++.+|++|+.++...++.++..|+++++.+ .+++..+++.
T Consensus 214 TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~ 292 (570)
T 3c5e_A 214 TSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT 292 (570)
T ss_dssp CCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH
T ss_pred CCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH
Confidence 99999999999999994442 44444 67889999999999999999996668999999999999987 5899999999
Q ss_pred HhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---
Q psy12852 722 CAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN--- 797 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--- 797 (1102)
|+++++|+++++|++++.|++.... ....+++.+++|||++++++.++|.+.++. +++|.||+||+++.++....
T Consensus 293 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE~~~~~~~~~~~~~ 371 (570)
T 3c5e_A 293 LSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTETGLTCMVSKTMKI 371 (570)
T ss_dssp HHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC-CCEEEEEETTTEEEEECCTTSCC
T ss_pred HHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCC-chhhccchhhcccceecCccccc
Confidence 9999999999999999999876422 234578888999999999999999998865 89999999999977654432
Q ss_pred CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe-ecCCcccccccCCch-HHHHHHh
Q psy12852 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK-QSDPSRHFYGYADKK-ESQKKIL 875 (1102)
Q Consensus 798 ~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~-~~G~~~~~~gY~~~~-~t~~~f~ 875 (1102)
..+++|.+. ....+.++|++ |. ++|.|++||++++.. +.|| .++.||++++ .|.++|.
T Consensus 372 ~~~~vG~p~-------~~~~v~i~d~~-g~-----------~~~~G~~GEl~v~~~~~~g~-~v~~GY~~~~~~t~~~f~ 431 (570)
T 3c5e_A 372 KPGYMGTAA-------SCYDVQIIDDK-GN-----------VLPPGTEGDIGIRVKPIRPI-GIFSGYVDNPDKTAANIR 431 (570)
T ss_dssp CTTCCCEEC-------TTCCEEEECTT-SC-----------BCCTTCCEEEEEECSSBCCT-TCCCEETTCHHHHHHTEE
T ss_pred CCCcccccC-------CCceEEEECCC-CC-----------CCCCCCCCeeEEeccCCCCc-hhhccccCChhHhhhhhc
Confidence 234444442 33455666654 43 458899998774311 1277 5889999997 5555552
Q ss_pred hcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE
Q psy12852 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV 955 (1102)
Q Consensus 876 ~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v 955 (1102)
++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++.+++. ....+++++
T Consensus 432 -------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~--~g~~~~a~v 502 (570)
T 3c5e_A 432 -------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV--RGEVVKAFV 502 (570)
T ss_dssp -------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT--TEEEEEEEE
T ss_pred -------CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCC--CCeEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999976653 333444444
Q ss_pred cCCCc-------cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 956 DTSNQ-------VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 956 ~~~~~-------~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+.... ...++|+++|+++||.||+|+.|+++++||+|+||||||++|++....
T Consensus 503 v~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 503 VLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 32211 236789999999999999999999999999999999999999987543
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=638.93 Aligned_cols=484 Identities=18% Similarity=0.211 Sum_probs=379.5
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +++ +|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~--~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRL--NET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHH--TGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHh--hhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 35555555 577 999999997654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC--ceEEEecCCCC---CCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDETKP---DLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
|+++.++.+++.+++++++++++|++......+.......+. ..++..+.... ....++++....... .....
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 179 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPA--AKAAA 179 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCC--SSCCC
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCc--ccccC
Confidence 999999999999999999999999998877666655443332 23333333210 122455544322211 11235
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHH-HHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe-C
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKV-LLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR-T 711 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~-~ 711 (1102)
..++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++|+.++...++.++..|+++++. +
T Consensus 180 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 259 (529)
T 2v7b_A 180 TGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259 (529)
T ss_dssp CCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS
T ss_pred CCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC
Confidence 67899999999999999999999999999 677777777789999999999999999999666778899999999988 5
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcc--ccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA--DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
.+++..+++.|+++++|++.++|+++..++....... ..+++.+++|||++++++.++|.+.++. +++|.||+||++
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE~~ 338 (529)
T 2v7b_A 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEML 338 (529)
T ss_dssp CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC-CEEEEEECTTTS
T ss_pred CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceeeeEchhhcC
Confidence 6899999999999999999999999999987654322 3467888899999999999999999865 899999999996
Q ss_pred cccccCC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 790 ANLVNMD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 790 ~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
.+++... ...+++|.+. ....+.++|++ |. ++|.|++||++ ++|| .++.||++
T Consensus 339 ~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~~~~gY~~ 394 (529)
T 2v7b_A 339 HIFLSNRAGAVEYGTTGRPV-------PGYEIELRDEA-GH-----------AVPDGEVGDLY----IKGP-SAAVMYWN 394 (529)
T ss_dssp SEEEECCTTCCCTTSCCEEC-------TTCEEEEECTT-SC-----------BCCTTSCEEEE----EECT-TCCCCBTT
T ss_pred ceeeccccCCCccCCcccCC-------CCCEEEEECCC-CC-----------CCCCCCccEEE----EecC-CcccccCC
Confidence 5544322 1223444432 34556666644 43 45788888866 5588 48899999
Q ss_pred ch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 867 KK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 867 ~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
++ .|.+.|. ++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|+++ ++.
T Consensus 395 ~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~- 465 (529)
T 2v7b_A 395 NREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHG- 465 (529)
T ss_dssp CHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EET-
T ss_pred ChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCC-
Confidence 87 5666653 5799999999999999999999999999999999999999999999999999999986 222
Q ss_pred CCceeEEEEEcCCCc--c--CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 946 DGRAGMIAIVDTSNQ--V--DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 946 ~~~~~l~~~v~~~~~--~--~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
.++...++++..... . ..++|+++|+++||.||+|..|+++++||+|+||||||++|++
T Consensus 466 ~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 466 GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred CceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 233333334322221 1 3468999999999999999999999999999999999999985
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-68 Score=654.91 Aligned_cols=488 Identities=19% Similarity=0.249 Sum_probs=387.9
Q ss_pred hcccCCcccchhhc------c---hHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 492 NARSTNDAAATTVK------N---LEAQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~------~---~Y~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
+++++|+++|+++. . +|+||.++++++|+.|+ +.|+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 91 ~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp HHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeC
Confidence 48889999999862 1 29999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhccCceEEEEcCcch---------hHHHHHHhcCCCc-eEEEecCCCC--------CCCChhHhhccC
Q psy12852 562 TNLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDV-KLFLLDETKP--------DLPNLSDLMKTT 623 (1102)
Q Consensus 562 ~~~p~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~ 623 (1102)
+.++.+++.+++++++++++|+++... +.+.......+.+ ++++++.... ....+.++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKY 250 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhc
Confidence 999999999999999999999987653 2344444444443 3555543211 112244444322
Q ss_pred CCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhh-hhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ-VGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 624 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
.. ........++|++||+|||||||+||||+++|+++..... .....++++++|++++.+|++|+.+..+.++.+|+
T Consensus 251 ~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~ 328 (663)
T 1ry2_A 251 KT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLL 328 (663)
T ss_dssp CS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHH
T ss_pred CC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHH
Confidence 21 1122456789999999999999999999999999876653 45567899999999999999999996689999999
Q ss_pred cCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHh
Q psy12852 703 LGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 703 ~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~ 774 (1102)
.|+++++.+. +++..+++.|+++++|+++++|++++.|.+.... ....++|.+++|||++++++++++.+.+
T Consensus 329 ~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 408 (663)
T 1ry2_A 329 YGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 408 (663)
T ss_dssp HTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred hCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999999875 5899999999999999999999999999876532 2345788889999999999999999988
Q ss_pred C--cchhhhccccccCCcccccCC------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC-CCC
Q psy12852 775 H--VQTIIEFYGATEGNANLVNMD------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY-NQP 845 (1102)
Q Consensus 775 ~--~~~l~n~YG~TE~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~-g~~ 845 (1102)
+ .++++|.||+||++..++... ...+++|.+. ..+.+.++|+++|.++ +. |+.
T Consensus 409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~-------~g~~v~i~d~~~g~~v-----------~~~g~~ 470 (663)
T 1ry2_A 409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF-------FGIDAVVLDPNTGEEL-----------NTSHAE 470 (663)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEEC-------TTCCEEEECSSSTTCE-----------ECSSCE
T ss_pred CCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCc-------CCCeEEEEcCCCCCcC-----------CCCCcc
Confidence 6 258999999999987654332 1233444432 3455667777456544 44 666
Q ss_pred cceEEEEeecCC-cccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHH
Q psy12852 846 GMIIGEIKQSDP-SRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923 (1102)
Q Consensus 846 Gel~gei~~~G~-~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE 923 (1102)
||++ +.|| ..++.||++++ .+.+.|+. ..++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||
T Consensus 471 Gel~----i~g~~p~~~~gy~~~~~~~~~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE 542 (663)
T 1ry2_A 471 GVLA----VKAAWPSFARTIWKNHDRYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 542 (663)
T ss_dssp EEEE----ESSCCTTSCCEETTCHHHHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHH
T ss_pred eEEE----EecCCCchhcccccChHHHHHhhhc----CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHH
Confidence 6654 6675 25899999997 45555543 2367999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC-c---c-------CHHHHHHHHHccCCCCCcceEEEEecCccCC
Q psy12852 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN-Q---V-------DLKLLVQGLDANLPAYARPLFVRIMKAIEMT 992 (1102)
Q Consensus 924 ~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~-~---~-------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t 992 (1102)
++|.+||+|.+|+|++++++. .++..+++++..+. . . ..++|+++|+++||+||+|+.|+++++||+|
T Consensus 543 ~~l~~~p~V~ea~Vvg~~~~~-~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T 621 (663)
T 1ry2_A 543 AAIIEDPIVAECAVVGFNDDL-TGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 621 (663)
T ss_dssp HHHHSSTTEEEEEEECCCCCT-TSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBC
T ss_pred HHHHhCCCcceEEEEEEecCC-CCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCC
Confidence 999999999999999865443 34444444442221 1 1 1578999999999999999999999999999
Q ss_pred CCccchhhhhhhcCCC
Q psy12852 993 GTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 993 ~~GKidr~~L~~~~~~ 1008 (1102)
+||||+|++|+++...
T Consensus 622 ~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 622 RSGKIMRRILRKILAG 637 (663)
T ss_dssp TTSCBCHHHHHHSCC-
T ss_pred CccCchHHHHHHHHcC
Confidence 9999999999998654
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-68 Score=637.00 Aligned_cols=470 Identities=18% Similarity=0.213 Sum_probs=386.7
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+++.+. |+||+++++++|++|++. |.++|++|+++++|++++++++|||+++|++++|+++.+|.+
T Consensus 10 ~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~ 89 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSE 89 (511)
T ss_dssp HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHH
T ss_pred HHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHH
Confidence 5999999999998765 999999999999999986 888999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCC-CceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTS 646 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 646 (1102)
++.+++++++++++|++...... ... ....+ ...++....... ........+++++||+|||
T Consensus 90 ~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TS 152 (511)
T 3e7w_A 90 RIAKIIESSGAELLIHAAGLSID------AVGQQIQTV----------SAEELLENEGGS-VSQDQWVKEHETFYIIYTS 152 (511)
T ss_dssp HHHHHHHHHTCCEEEESSSCCTT------CCCCSSCEE----------EHHHHHTSCSCC-CCGGGSCCTTSEEEEEEEC
T ss_pred HHHHHHHhCCCCEEEecccccch------hccccccee----------cHhhhhccccCC-ccccccCCCCCeEEEEECC
Confidence 99999999999999997543210 000 11111 222333222211 1122346788999999999
Q ss_pred CCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHh
Q psy12852 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCA 723 (1102)
Q Consensus 647 GSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~ 723 (1102)
||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+ +..++.++..|+++++.+. +++..+++.++
T Consensus 153 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~ 231 (511)
T 3e7w_A 153 GSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLS-VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELK 231 (511)
T ss_dssp CTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHH-HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHH
T ss_pred CCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHH-HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 7889999999999999876 68999999999
Q ss_pred hcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----
Q psy12852 724 KYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---- 797 (1102)
Q Consensus 724 ~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---- 797 (1102)
++++|++.++|++++.++..+.. ....+++.+++|||++++++.+++.+.+++++++|.||+||+++.++....
T Consensus 232 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 311 (511)
T 3e7w_A 232 KSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDV 311 (511)
T ss_dssp HHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHH
T ss_pred HcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccc
Confidence 99999999999999999886543 234567888999999999999999999987799999999999987664321
Q ss_pred ----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHH
Q psy12852 798 ----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQK 872 (1102)
Q Consensus 798 ----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~ 872 (1102)
....+|.+. ..+.+.++|++ |. ++|.|++||++ +.|| .++.||++++ .|.+
T Consensus 312 ~~~~~~~~~G~~~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~ 367 (511)
T 3e7w_A 312 ISRSESLPVGFAK-------PDMNIFIMDEE-GQ-----------PLPEGEKGEIV----IAGP-SVSRGYLGEPELTEK 367 (511)
T ss_dssp HTTCSSCCCBEEC-------TTCEEEEECTT-SC-----------BCCTTCCEEEE----EEST-TSCCCBTTCHHHHHH
T ss_pred cccCCcCCCccee-------CCCEEEEECCC-CC-----------CCCCCCceEEE----EecC-ccChhhCCCcccchh
Confidence 222344432 34566667755 43 45888888876 4588 5889999987 6777
Q ss_pred HHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEE
Q psy12852 873 KILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI 952 (1102)
Q Consensus 873 ~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~ 952 (1102)
.|+.. +|++||+|||+|++ +||.|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++..++
T Consensus 368 ~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a 442 (511)
T 3e7w_A 368 AFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNG-TVEYLIA 442 (511)
T ss_dssp HEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSS-SCCEEEE
T ss_pred hhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCC-CceEEEE
Confidence 77543 45678999999999 5899999999999999999999999999999999999999999866443 3444444
Q ss_pred EEEcCCCc-cC----HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 953 AIVDTSNQ-VD----LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 953 ~~v~~~~~-~~----~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++..+.. .+ .++|+++|+++||.||+|..|+++++||+|+||||||++|++...+
T Consensus 443 ~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 443 AIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp EEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 45433322 22 4689999999999999999999999999999999999999987543
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-68 Score=644.67 Aligned_cols=482 Identities=16% Similarity=0.155 Sum_probs=381.2
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
..+.|.+ +|+++|+++|+.+.+. |+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 6 l~~~l~~---~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 6 MIDSIEQ---FAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp HHHHHHH---HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHH---HHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 3444444 4899999999988764 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSD 638 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1102)
|+++.++.+++.+++++++++++|++.+....+ ....++.++. +........ .........++|
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~d 146 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------EGISLVSLSE-------IESAKLAEM--PYERTHSVKGDD 146 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------TTSEEEEHHH-------HHHHHHHTC--CCCCSSCCCTTS
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc-------ccCcccchhh-------hhhcccccC--CcccCCCCCCCC
Confidence 999999999999999999999999987653221 1222322211 111111111 111224567899
Q ss_pred eEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc--cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---C
Q psy12852 639 SLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL--LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---F 713 (1102)
Q Consensus 639 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~ 713 (1102)
++||+|||||||.||||+++|+++.+.+.+.... +++.+++++++..|++|+.+ +..++.++..|+++++.+. .
T Consensus 147 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~ 225 (521)
T 3l8c_A 147 NYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLS-VMYWAPTLALGGTLFALPKELVA 225 (521)
T ss_dssp EEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGG-HHHHHHHHHTTCEEEECCGGGTT
T ss_pred cEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHH-HHHHHHHHhcCCEEEEcCHHHhh
Confidence 9999999999999999999999999888777655 77889999999999999988 7889999999999999886 4
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
++..+++.+.++++|++.++|+++..++..... ....+++.+++||+++++++.+++.+.+++++++|.||+||+++.
T Consensus 226 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 305 (521)
T 3l8c_A 226 DFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA 305 (521)
T ss_dssp CHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhh
Confidence 899999999999999999999999988776543 234577888999999999999999999987799999999999987
Q ss_pred cccCC--------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 792 LVNMD--------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 792 ~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
++... ....++|.+. ....+.++|++ |. +++.|++||++ ++|| .++.|
T Consensus 306 ~~~~~~~~~~~~~~~~~~vG~p~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~v~~G 361 (521)
T 3l8c_A 306 LSAIEITREMVDNYTRLPIGYPK-------PDSPTYIIDED-GK-----------ELSSGEQGEII----VTGP-AVSKG 361 (521)
T ss_dssp SEEEEECHHHHHHCSSCEEEEEC-------TTSCEEEECTT-SC-----------BCCTTCCEEEE----EEST-TSCSC
T ss_pred hceeecccccccCCCcccccccc-------CCCEEEEECCC-cC-----------CCCCCCceEEE----eccc-ccChh
Confidence 65432 1233455543 34455566654 43 45788888866 5588 58899
Q ss_pred cCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEc
Q psy12852 864 YADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942 (1102)
Q Consensus 864 Y~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~ 942 (1102)
|++++ .|.+.|+.. ++++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.++|+|.+|+|++...
T Consensus 362 Y~~~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 438 (521)
T 3l8c_A 362 YLNNPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYN 438 (521)
T ss_dssp BTTCHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred hcCCchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence 99987 677777532 45799999999999999999999999999999999999999999999999999999998554
Q ss_pred CCCCCceeEEEEEcCCCc-c-------CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCC
Q psy12852 943 GDLDGRAGMIAIVDTSNQ-V-------DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPS 1010 (1102)
Q Consensus 943 ~~~~~~~~l~~~v~~~~~-~-------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~ 1010 (1102)
....++..+++++..+.. . ..++|+++|+++||.||+|..|+++++||+|+||||||++|++...+..
T Consensus 439 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp SSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 443344445555433221 1 1578999999999999999999999999999999999999999876543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-68 Score=639.01 Aligned_cols=471 Identities=20% Similarity=0.219 Sum_probs=360.9
Q ss_pred ccchhhhHHHHHHHHhhcccCCc-ccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHH
Q psy12852 476 QLEVDVTYSRFKQEASNARSTND-AAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551 (1102)
Q Consensus 476 ~~~~~~~~~~~~~~~~~a~~~P~-~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l 551 (1102)
.++..+.++.+.+ +++++|+ ++|+++++. |+||+++++++|+.|. .|++|+|+++|++++++++|||+
T Consensus 18 ~~~~~tl~~~l~~---~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 18 GSHMSSLFPALSP---APTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp ------CCTTTSS---CCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHH
T ss_pred CcccchhHHHHHH---HHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHH
Confidence 3333444455544 4778876 999998775 9999999999999874 37899999999999999999999
Q ss_pred HcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCC
Q psy12852 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPS 631 (1102)
Q Consensus 552 ~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1102)
++|++++|+||.+|.+++.+++++++++++|++..... .........+.++.. .......
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~---------------~~~~~~~ 149 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDVDVR---------------ARGAVPE 149 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEECCTT---------------CCCCCCC
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccccccc---------------cccCCCC
Confidence 99999999999999999999999999999999865211 011122333332211 0011112
Q ss_pred CCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 632 EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 632 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
....++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++..++.+|..|+++++.+
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 45678899999999999999999999999999999999999999999999999999999997788999999999999999
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC-----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
++++..+++.+ ++++|+++++|+++..|+..... ....+++.+++||+++++++.+++.+.++. +++|.||+|
T Consensus 230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~T 307 (505)
T 3nyq_A 230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RVIERYGMT 307 (505)
T ss_dssp SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC-CCEEEEEET
T ss_pred CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC-eeecccchh
Confidence 99999999999 88999999999999998773221 223467888999999999999999998866 899999999
Q ss_pred cCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 787 EGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 787 E~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
|+++.++.... ...++|.+. ....+.++|++ |.++. .++.|++||++ +.|| .++.|
T Consensus 308 E~~~~~~~~~~~~~~~~~vG~p~-------~~~~~~i~d~~-g~~~~--------~~~~g~~GEl~----v~g~-~v~~G 366 (505)
T 3nyq_A 308 ETLMNTSVRADGEPRAGTVGVPL-------PGVELRLVEED-GTPIA--------ALDGESVGEIQ----VRGP-NLFTE 366 (505)
T ss_dssp TTEEEEECCTTSCCCTTCCCEEC-------TTCEEEEC------CCC--------CCCSCCCEEEE----EEST-TSCCE
T ss_pred hcccccccCCCCCCCCCCcccCC-------CCCEEEEECCC-CCCcc--------cCCCCceEEEE----EecC-chhhh
Confidence 99987664432 223344432 34556666655 54441 12336666655 5688 58999
Q ss_pred cCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccC-CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEE
Q psy12852 864 YADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT-GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941 (1102)
Q Consensus 864 Y~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~ 941 (1102)
|++++ .|.++|.. ++||+|||+|++++||.|+|+||+ |+|||++|+||+|.|||++|.+||+|.+|+|++++
T Consensus 367 Y~~~~~~t~~~f~~------~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~ 440 (505)
T 3nyq_A 367 YLNRPDATAAAFTE------DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEP 440 (505)
T ss_dssp ETTCHHHHHHTBCT------TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred hCCChhHhhhhhcC------CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeE
Confidence 99997 56666643 689999999999999999999997 69999999999999999999999999999999977
Q ss_pred cCCCCCceeEEEEEcC--CCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 942 VGDLDGRAGMIAIVDT--SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 942 ~~~~~~~~~l~~~v~~--~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
++. .++..+++++.. ....+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 441 ~~~-~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 441 DPD-LGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp ETT-TEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCC-CCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 664 334444444432 23567899999999999999999999999999999999999999985
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-68 Score=639.10 Aligned_cols=471 Identities=17% Similarity=0.188 Sum_probs=358.8
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+++|+++|+++.+. |+||+++++++|++|++. +|++|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 10 ~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~ 86 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE 86 (501)
T ss_dssp HHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHH
T ss_pred HHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHH
Confidence 5899999999998775 999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCC------CCChhHh---hccCCCCCCCCCCCCCCCCe
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPD------LPNLSDL---MKTTPASEVKPSEPLQTSDS 639 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 639 (1102)
+.+++++++++++|++........... .......+........ ...+... ................++|+
T Consensus 87 l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 165 (501)
T 3ipl_A 87 MTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDI 165 (501)
T ss_dssp HHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC--------------------------------CCHHHHTCCCCCTTSE
T ss_pred HHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccccccccccccccchhhccccCCcccccccCCCCCCe
Confidence 999999999999999876543221100 0000000000000000 0000000 00000000011234678999
Q ss_pred EEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHH
Q psy12852 640 LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYF 719 (1102)
Q Consensus 640 a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~ 719 (1102)
+||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.+++.|+++++.+++++..++
T Consensus 166 a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~l~~G~~~~~~~~~~~~~~~ 244 (501)
T 3ipl_A 166 ASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISG-LSVLLRAVIEGFTVRIVDKFNAEQIL 244 (501)
T ss_dssp EEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHH-HHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred EEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHH-HHHHHHHHHcCceEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 66789999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC---
Q psy12852 720 RDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD--- 796 (1102)
Q Consensus 720 ~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--- 796 (1102)
+.|+++++|++.++|++++.|+........ +++.+++|||++++++.+++.+ ++ ++++|.||+||++..++...
T Consensus 245 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~-~~-~~~~~~YG~TE~~~~~~~~~~~~ 321 (501)
T 3ipl_A 245 TMIKNERITHISLVPQTLNWLMQQGLHEPY-NLQKILLGGAKLSATMIETALQ-YN-LPIYNSFGMTETCSQFLTATPEM 321 (501)
T ss_dssp HHHHHSCCCEEEECHHHHHHHHHHTCCSCT-TCCEEEECSSCCCHHHHHHHHH-TT-CCEEEEEEEGGGTEEEEEECHHH
T ss_pred HHHHHcCCcEEEchHHHHHHHHhcCCCCcC-cccEEEEeCCCCCHHHHHHHHH-hC-CCEeccccccccccceeecCccc
Confidence 999999999999999999999887654333 7888999999999999999987 44 48999999999987554322
Q ss_pred --CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHH
Q psy12852 797 --NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKI 874 (1102)
Q Consensus 797 --~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f 874 (1102)
....++|.+. .+..+.++|++ .|..|| |++.|+ .++.||++++..+..|
T Consensus 322 ~~~~~~~~G~p~-------~~~~~~i~d~~-----------------~~~~GE----l~v~g~-~~~~gY~~~~~~t~~~ 372 (501)
T 3ipl_A 322 LHARPDTVGMPS-------ANVDVKIKNPN-----------------KEGHGE----LMIKGA-NVMNGYLYPTDLTGTF 372 (501)
T ss_dssp HHHCTTCCBEEC-------TTCEEEEESCC-----------------SSCCEE----EEEEST-TSCSCCSBSTTCCCSE
T ss_pred cccCCCCCCCCC-------CCcEEEEecCC-----------------CCCccE----EEEecc-chhhhhCcChhhcchh
Confidence 2334455543 23444445433 234455 556798 5899999987433333
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
.++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++. ....++++
T Consensus 373 -------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~--~g~~~~a~ 443 (501)
T 3ipl_A 373 -------ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDT--WGQVPKLY 443 (501)
T ss_dssp -------ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT--TEEEEEEE
T ss_pred -------cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEeccc--CCceEEEE
Confidence 268999999999999999999999999999999999999999999999999999999976654 33444555
Q ss_pred EcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 955 VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 955 v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+..+...+.++|+++|+++||.||+|..|+++++||+|+||||||++|++....
T Consensus 444 v~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 444 FVSESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEeCCCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 545667889999999999999999999999999999999999999999987543
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-65 Score=630.02 Aligned_cols=490 Identities=16% Similarity=0.185 Sum_probs=381.1
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc-------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN-------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~-------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
++..++.. +|+++|+++|+++.+ +|+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus 12 tl~~~l~~--~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 89 (590)
T 3kxw_A 12 SLVDVVRL--RALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAG 89 (590)
T ss_dssp SHHHHHHH--HHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cHHHHHHH--HHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence 34444444 599999999998632 299999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCC---CchhhhhhhhccCceEEEEcCcchhHHHHHH-hcCCC---ceEEEecCCCCCCCChhHhhccCCCCC
Q psy12852 555 VISALINTNL---KKQPLVHSISTVKSKAIIVSALYYPEIEAIR-ESIPD---VKLFLLDETKPDLPNLSDLMKTTPASE 627 (1102)
Q Consensus 555 ~~~vpld~~~---p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1102)
++++|++|.+ +.+++.++++++++++++++.+....+.... ...+. ..++..+. ...... .
T Consensus 90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~ 157 (590)
T 3kxw_A 90 CIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALES----------IELNRS--S 157 (590)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGG----------CCGGGG--G
T ss_pred cEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechh----------cccccc--c
Confidence 9999999988 4578999999999999999876554433221 11111 12221111 000000 0
Q ss_pred CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 628 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
........++|++||+|||||||.||||++||+++.+++.+....++++++|++++++|++|+.|+...++.+++.|+++
T Consensus 158 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~ 237 (590)
T 3kxw_A 158 SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQA 237 (590)
T ss_dssp GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEE
T ss_pred cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceE
Confidence 11124567899999999999999999999999999999999999999999999999999999999555589999999999
Q ss_pred EEeCCC----CHhHHHHHHhhcccccccccHHHHHHHHhccC-----CccccccceeeeeccCCCHHHHHHHHHHhC---
Q psy12852 708 AIRTKF----SASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-----SEADYSHQVVKMIGVGMRGDIWAKFVKRFH--- 775 (1102)
Q Consensus 708 v~~~~~----~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~--- 775 (1102)
++.+++ ++..+++.|+++++|++.++|+++..+++... .....+++.+++|||++++++.++|.+.++
T Consensus 238 v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g 317 (590)
T 3kxw_A 238 IMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFG 317 (590)
T ss_dssp EECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGT
T ss_pred EEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcC
Confidence 998874 89999999999999999999999998876422 123457788899999999999999999884
Q ss_pred --cchhhhccccccCCcccccCCCC-------------------------CCcccccCCCCCCcCCCeeeEEeecCCCCC
Q psy12852 776 --VQTIIEFYGATEGNANLVNMDNT-------------------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQP 828 (1102)
Q Consensus 776 --~~~l~n~YG~TE~~~~~~~~~~~-------------------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~ 828 (1102)
..+++|.||+||++++++..... .........+.|. +. +.++|++++.
T Consensus 318 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~---~~-v~i~d~~~~~- 392 (590)
T 3kxw_A 318 FRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPI---QE-VKIIDPDTLI- 392 (590)
T ss_dssp CCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEES---SE-EEEECTTTCC-
T ss_pred CCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCC---CC-eEEEcCCCCc-
Confidence 34799999999999877643211 1111111112121 11 4556666543
Q ss_pred cCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCC--CCeEEEecceeEEecCccEEEEcc
Q psy12852 829 IRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKP--GDKYFLSGDMMVMDELGYLYFKDR 905 (1102)
Q Consensus 829 i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~--g~~~yrTGDl~~~~~dG~l~~~GR 905 (1102)
+++.|++|||+ ++|| .++.||+|++ .|.++|..+++.+ |.+||+|||+|+++ ||.|+|+||
T Consensus 393 ----------~~~~g~~GEl~----v~g~-~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 393 ----------PCDFDQVGEIW----VQSN-SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp ----------BCCTTBCEEEE----EEST-TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred ----------CCCCCCEEEEE----EeCC-cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 45788888866 5588 5899999987 6778887655543 34599999999999 999999999
Q ss_pred CCCeEEeCceeechHHHHHHH-HhcCCcc--eeEEEEEEcCCCCCceeEEEEEcCCC---ccCHHHHHHHHHccCCC-CC
Q psy12852 906 TGDTYRWKGENVSTMEVEATI-SKYLPYT--EFTVYGVKVGDLDGRAGMIAIVDTSN---QVDLKLLVQGLDANLPA-YA 978 (1102)
Q Consensus 906 ~dd~Iki~G~ri~~~eIE~~l-~~~~~V~--~a~vv~~~~~~~~~~~~l~~~v~~~~---~~~~~~l~~~l~~~Lp~-~~ 978 (1102)
+|||||++|+||+|.|||++| ..+|+|. +|+|++++++. ++...++++.... ..+.++++++|+++|+. |+
T Consensus 457 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 534 (590)
T 3kxw_A 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH--EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ 534 (590)
T ss_dssp SSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT--EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC--CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999 8899998 78888876654 4444444443322 45678899999999985 78
Q ss_pred cce-EEEE--ecCccCCCCccchhhhhhhcCCC
Q psy12852 979 RPL-FVRI--MKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 979 ~P~-~i~~--l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+|. .+++ +++||+|+||||||++|+++..+
T Consensus 535 ~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 535 LEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred CceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 886 4444 47999999999999999987644
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-66 Score=629.23 Aligned_cols=479 Identities=15% Similarity=0.159 Sum_probs=291.0
Q ss_pred HHHHHHHHhhcccCCcccchhhcc-------------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN-------------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~-------------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
.+.|.+ +|+++|+++|+++.+ +|+||+++++++|+.|.+.|+ +|++|+|+++|++++++++||
T Consensus 23 ~~~l~~---~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA 98 (562)
T 3ite_A 23 SHYIET---WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVG 98 (562)
T ss_dssp THHHHH---HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHH---HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHH
Confidence 444444 599999999998643 399999999999999999999 799999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCC
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1102)
|+++|++++|++|.++.+++.+++++++++++|++......+. ......++..+ ...+.+..........
T Consensus 99 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~- 168 (562)
T 3ite_A 99 IMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE----LPPETKVLDTK-----NQSFIENLSTQDTSDI- 168 (562)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC----CCTTCEEEETT-----CHHHHHHHHHSCCSCC-
T ss_pred HHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc----cCccceeeccc-----chhhhhhccccccccc-
Confidence 9999999999999999999999999999999999876443210 01112222211 1112222222222111
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh--------ccCCCCCcEEEEecCchhhhhHHHHHHhHh
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH--------LLSLGSGDVIYNCLPMYHSAGGLIGTIPAL 701 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l 701 (1102)
.....+++++||+|||||||.||||+++|+++.+.+.+... .+.+...+++++..|++|+.+ +..++.++
T Consensus 169 -~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 246 (562)
T 3ite_A 169 -LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVH-IGEMFLAW 246 (562)
T ss_dssp -CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHH-HHHHHHHH
T ss_pred -ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhh-HHHHHHHH
Confidence 13456788999999999999999999999999887765443 345788999999999999987 88899999
Q ss_pred hcCceEEEeCCCC-HhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhh
Q psy12852 702 ILGSSIAIRTKFS-ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780 (1102)
Q Consensus 702 ~~G~~lv~~~~~~-~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~ 780 (1102)
..|+++++.+++. +..+.+.++++++|++.++|++++.+...+ ....+++.+++||+++++++.++|.+.++. +++
T Consensus 247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~ 323 (562)
T 3ite_A 247 RFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP--EDAPHLVYLGVGGEKMTPRTQQIWSSSDRV-ALV 323 (562)
T ss_dssp HTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG--GGSTTCCEEEEESSCCCHHHHHHHTTCSSC-EEE
T ss_pred hcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc--cccCceEEEEEecCCCCHHHHHHHhhCCCc-EEE
Confidence 9999999987643 577889999999999999999998874433 235578889999999999999999886654 899
Q ss_pred hccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecC
Q psy12852 781 EFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856 (1102)
Q Consensus 781 n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G 856 (1102)
|.||+||+++.++.... ...++|.+. .+..+.++|++++. +++.|++||++ ++|
T Consensus 324 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~~~~-----------~~~~g~~GEl~----v~g 381 (562)
T 3ite_A 324 NVYGPTEVTIGCSAGRILPDSDTRCIGHPL-------GDSVAHVLAPGSNE-----------HVKKGMAGELV----IEG 381 (562)
T ss_dssp EEECCGGGCSCSEEEECCTTSCTTEEEEEC-------TTCEEEEECTTSSC-----------BCCTTSCEEEE----EES
T ss_pred EeeccchheeeeeeeeecCCCCCccccccC-------CCCeEEEEeCCCCC-----------CCCCCCceEEE----Eec
Confidence 99999999877654322 223444442 34556677766554 34788888876 458
Q ss_pred CcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc-CCccee
Q psy12852 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY-LPYTEF 935 (1102)
Q Consensus 857 ~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~-~~V~~a 935 (1102)
| .++.||+|++..+. |. +.+|++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.++ +.+.++
T Consensus 382 ~-~v~~GY~~~p~~t~-~~---~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~ 456 (562)
T 3ite_A 382 S-LVANGYLNRPDAKG-FC---DINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDV 456 (562)
T ss_dssp T-TSCCEESSCTTCCS-EE---EETTEEEEEEEEEEEECTTSCEEEEEEC------------------------------
T ss_pred c-ccchhhCCCccccc-cc---cCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeE
Confidence 8 58999999874332 21 235678999999999999999999999999999999999999999999998 778888
Q ss_pred EEEEEEcCCCCCceeEEEEEcC-CCcc-------------CHHHHHHHHHccCCCCCcceEEEEecCccCC-CCccchhh
Q psy12852 936 TVYGVKVGDLDGRAGMIAIVDT-SNQV-------------DLKLLVQGLDANLPAYARPLFVRIMKAIEMT-GTFKIKKI 1000 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v~~-~~~~-------------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t-~~GKidr~ 1000 (1102)
+|++.+++. .++..+++++.. +... ..++|+++|+++||.||+|+.|+++++||+| +||||||+
T Consensus 457 ~v~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~ 535 (562)
T 3ite_A 457 VTLLLNHPG-TSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAK 535 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCC-CcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHH
Confidence 888766654 344445555432 2221 2358999999999999999999999999998 99999999
Q ss_pred hhhhcCCC
Q psy12852 1001 QLQNEGFD 1008 (1102)
Q Consensus 1001 ~L~~~~~~ 1008 (1102)
+|+++...
T Consensus 536 ~L~~~~~~ 543 (562)
T 3ite_A 536 ALEHMFHT 543 (562)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 99987654
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=499.78 Aligned_cols=399 Identities=16% Similarity=0.159 Sum_probs=300.4
Q ss_pred hccccccchhhhHHHHHHHHhhcccCCcccchhhcc------------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC
Q psy12852 471 QSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKN------------LEAQIDEYSNKIARILQDDGFKKGDVLALMCE 538 (1102)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~------------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~ 538 (1102)
+.+....+..+..+.|.+ +|+++|+++|+++.+ +|+||.++++++|+.|++.|+ +|++|+|+++
T Consensus 15 ~~~~~~~~~~tl~~~l~~---~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~ 90 (480)
T 3t5a_A 15 VPRGSHMSVRSLPAALRA---CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAP 90 (480)
T ss_dssp ---------CCHHHHHHH---HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECC
T ss_pred CcccCCCCcccHHHHHHH---HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcC
Confidence 334444454555555555 489999999998754 399999999999999999996 9999999999
Q ss_pred CchhHHHHHHHHHHcCceEeecCC---CCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC---ceEEEecCCCCC
Q psy12852 539 NRPEYVGVWLGAAKLGVISALINT---NLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPD 612 (1102)
Q Consensus 539 ~~~~~vv~~lA~l~aG~~~vpld~---~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 612 (1102)
|++++++++|||+++|+++||+++ .++.+++.+++++++++++|++......+.......+. ..++.++...
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-- 168 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC--
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc--
Confidence 999999999999999999999999 88999999999999999999999887766654433322 2333333211
Q ss_pred CCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCC------CcEEEEecC
Q psy12852 613 LPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS------GDVIYNCLP 686 (1102)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p 686 (1102)
... ..........+++++||+|||||||.||||++||+++.+++.+....+++.. +|++++++|
T Consensus 169 ---------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------ccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 000 1111224567889999999999999999999999999999988888888887 999999999
Q ss_pred chhhhhHHHHHHhHhhcCceEEEeCCC----CHhHHHHHHhhcccccccccHHHHHHHHhcc------CCccccccceee
Q psy12852 687 MYHSAGGLIGTIPALILGSSIAIRTKF----SASNYFRDCAKYKCNAGIYIGEMCRYLLASK------ESEADYSHQVVK 756 (1102)
Q Consensus 687 l~~~~~~~~~i~~~l~~G~~lv~~~~~----~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~------~~~~~~~l~~~~ 756 (1102)
++|+.|+...++.+|+.|+++++.++. ++..+++.++++++| +.++|+++..++... ......+++.++
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~ 317 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTIL 317 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEE
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheee
Confidence 999999778899999999999998763 899999999999999 889999888776531 123345788899
Q ss_pred eeccCCCHHHHHHHHHHhC-----cchhhhccccccCCcccccCCCCCCc----------------------ccccCCCC
Q psy12852 757 MIGVGMRGDIWAKFVKRFH-----VQTIIEFYGATEGNANLVNMDNTEGA----------------------VGIIPTLL 809 (1102)
Q Consensus 757 ~~Ge~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~~----------------------~g~~~~~~ 809 (1102)
+|||+++++++++|.+.++ .++++|.||+||++++++........ .....+.+
T Consensus 318 ~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G 397 (480)
T 3t5a_A 318 SGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYM 397 (480)
T ss_dssp ECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEE
T ss_pred ecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecC
Confidence 9999999999999999983 45899999999999877654321100 00111122
Q ss_pred CCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc-----CCCC
Q psy12852 810 PTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF-----KPGD 883 (1102)
Q Consensus 810 ~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~-----~~g~ 883 (1102)
.+. . ..+.++|+++|. ++|.|++|||+ ++|| .++.||+|+| .|.++|..+++ .+++
T Consensus 398 ~p~-~-~~~~ivd~~~g~-----------~~~~g~~GEl~----v~g~-~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~ 459 (480)
T 3t5a_A 398 LPR-S-PIVRIVDSDTCI-----------ECPDGTVGEIW----VHGD-NVANGYWQKPDESERTFGGKIVTPSPGTPEG 459 (480)
T ss_dssp CCS-S-SEEEEEETTTTE-----------ECCTTBCEEEE----EEST-TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCC
T ss_pred ccc-C-CEEEEEcCCCCc-----------CCCCCCEEEEE----EeCC-ccccccccCcchhHHHHhhhhccccCCCCCC
Confidence 222 2 567778877554 45888888866 5588 5899999987 77788854332 2257
Q ss_pred eEEEecceeEEecCccEEEEcc
Q psy12852 884 KYFLSGDMMVMDELGYLYFKDR 905 (1102)
Q Consensus 884 ~~yrTGDl~~~~~dG~l~~~GR 905 (1102)
+||||||+|+++ ||+|+|+||
T Consensus 460 ~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 460 PWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CBEEEEEEEEEE-TTEEEECC-
T ss_pred CeeeccceeeEE-CCEEEEeCC
Confidence 899999999997 999999999
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=467.18 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=249.5
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
.+++|||+|||||||.||||++||+++.+++.+....++++++|++++++|++|++| +..++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g-l~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAG-LMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH-HHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHH-HHHHHHHHHhCcEEEecCcc--
Confidence 368999999999999999999999999999999999999999999999999999998 77889999999999998752
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN 794 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 794 (1102)
...++.|+++++|++.++|++++.|++.... ....+++.+++||+++++++.+++.+ ++ .+++|.||+||++..++.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~-~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISD-LA-MPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHT-CS-SCEEEEEECGGGSSEEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccc-cC-ceEEeccccccccceeec
Confidence 2335678999999999999999999886543 34457888899999999999999976 34 489999999999877654
Q ss_pred CCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHH
Q psy12852 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKI 874 (1102)
Q Consensus 795 ~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f 874 (1102)
........|... +..+ | ..++.+..||++.+ |+.
T Consensus 191 ~~~~~~~~g~~~-------------~~~p--g-----------v~~~~~~~Gel~~~----g~~---------------- 224 (358)
T 4gs5_A 191 KALNGPEASELY-------------VFLP--G-----------IQYGVDERGCLHIS----GAV---------------- 224 (358)
T ss_dssp EECSSTTCCSCE-------------EECT--T-----------CEEEECTTSEEEEE----SGG----------------
T ss_pred ccccccccceee-------------ccCC--C-----------eEEEecCcCceEEe----ccc----------------
Confidence 332221111110 0000 1 11234556766532 431
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHH---HhcCCcceeEEEE-EEcCCCCCcee
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI---SKYLPYTEFTVYG-VKVGDLDGRAG 950 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l---~~~~~V~~a~vv~-~~~~~~~~~~~ 950 (1102)
..++||+|||+|++|+|| ++|+||+||+||++|+||+|.|||++| .+||+|.+|+|+. .+++ ..++..
T Consensus 225 ------~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~-~~ge~~ 296 (358)
T 4gs5_A 225 ------TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDA-KLGQKL 296 (358)
T ss_dssp ------GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEET-TTEEEE
T ss_pred ------ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCc-cCCEEE
Confidence 126899999999999988 778899999999999999999999877 4689999998874 3333 234444
Q ss_pred EEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 951 MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 951 l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++++......+.++|+++|+++||.||+|++|+++++||+|+||||||++|++...+
T Consensus 297 ~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 297 VLVIENAMPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred EEEEECCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 4444444455677899999999999999999999999999999999999999987544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=426.06 Aligned_cols=328 Identities=16% Similarity=0.099 Sum_probs=255.0
Q ss_pred CCCC-CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEE
Q psy12852 633 PLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 633 ~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv 708 (1102)
...+ +++++|+|||||||.||||+++|+++.+...... ..++++++|++++.+|++|+.+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8899999999999999999999999987766553 34589999999999999887777888899999999999
Q ss_pred EeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccc
Q psy12852 709 IRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 709 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 784 (1102)
+.+..++..+++.|+++++|+++++|+++..|++..... ...+++.+++|||++++++.++|.+.++. +++|.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV-KAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc-cEEecCc
Confidence 998899999999999999999999999999998753221 24578889999999999999999999865 8999999
Q ss_pred cccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccccc
Q psy12852 785 ATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864 (1102)
Q Consensus 785 ~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY 864 (1102)
+||+++.++.... ....|... + .....+.++|+++|.+ ++.|+.||++++ |+.
T Consensus 240 ~TE~~~~~~~~~~-~~~~g~~~---~--~~~~~v~i~d~~~g~~-----------~~~g~~Gel~v~----~~~------ 292 (436)
T 3qov_A 240 MTEMNGPGVAFEC-QEQNGMHF---W--EDCYLVEIIDPETGEP-----------VPEGEIGELVLT----TLD------ 292 (436)
T ss_dssp EGGGTEEEEEEEC-TTCSSEEE---C--TTTEEEEEECTTTCSB-----------CSTTCCEEEEEE----ESS------
T ss_pred chhhcCCeeEEec-CCCCeeEE---c--cCceEEEEEECCCCCC-----------CCCCCceEEEEe----ccC------
Confidence 9999654322221 11122111 1 1345666777666654 488899988754 331
Q ss_pred CCchHHHHHHhhcccCCCCeEEEecceeEEecCc------c---EEEEccCCCeEEeCceeechHHHHHHHHhcCCccee
Q psy12852 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELG------Y---LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEF 935 (1102)
Q Consensus 865 ~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG------~---l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a 935 (1102)
+ +.| ..+||+|||+|+++++| . ++|+||+||+||++|+||+|.|||++|.+||+|.++
T Consensus 293 -~-----~~~-------~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~ 359 (436)
T 3qov_A 293 -R-----EMM-------PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSN 359 (436)
T ss_dssp -C-----CSS-------CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEE
T ss_pred -c-----CCc-------eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCc
Confidence 1 011 26799999999999998 5 699999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCceeEEEEEcC-CCccC----HHHHHHHHHccCCCC-CcceEEEEec--CccCCCCccchhhhhhh
Q psy12852 936 TVYGVKVGDLDGRAGMIAIVDT-SNQVD----LKLLVQGLDANLPAY-ARPLFVRIMK--AIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v~~-~~~~~----~~~l~~~l~~~Lp~~-~~P~~i~~l~--~lP~t~~GKidr~~L~~ 1004 (1102)
+|+++..+. +...+++++.. +...+ .++++++|+++|+.| ++|..+.+++ +||+|+ ||++|...++
T Consensus 360 ~vv~~~~~~--~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~R 433 (436)
T 3qov_A 360 YLITLETVN--NQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKDLR 433 (436)
T ss_dssp EEEEEEEET--TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEECS
T ss_pred EEEEEEcCC--CCcEEEEEEEEcCccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEecC
Confidence 999876654 34445555533 22233 678999999999999 9999999999 999999 9999976543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=426.34 Aligned_cols=328 Identities=13% Similarity=0.059 Sum_probs=257.6
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
...++++++|+|||||||.||||+++|+++.+...... ..++++++|++++.+|+++..+.+..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45678999999999999999999999999987655443 367899999999999985444447788999999999999
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 785 (1102)
.+.+++..+++.|+++++|++.++|+++..|++..... ...+++.+++|||++++++.++|.+.++. +++|.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI-DALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc-CEEeccCc
Confidence 88889999999999999999999999999987653211 13577888999999999999999999864 89999999
Q ss_pred ccCCcc--cccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 786 TEGNAN--LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 786 TE~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
||+++. +..... ...|... ......+.++|+++|.+ +|.|+.||++++ |..
T Consensus 247 TE~~g~~~~~~~~~--~~~g~~~-----~~~~~~~~i~d~~~g~~-----------~~~G~~Gel~v~----~~t----- 299 (443)
T 2y4o_A 247 SEVMGPGVACECVE--TKDGPVI-----WEDHFYPEIIDPVTGEV-----------LPDGSQGELVFT----SLT----- 299 (443)
T ss_dssp TTTTEEEEEEECTT--TCCSEEE-----CTTTEEEEEECTTTCCB-----------CCTTCCEEEEEE----ESS-----
T ss_pred hhhcCCeEEeccCC--CCCceEE-----ccCCeEEEEEcCCCCCC-----------CCCCCceEEEEe----CCC-----
Confidence 998543 222221 1112211 11345666777666654 478889988744 321
Q ss_pred cCCchHHHHHHhhcccCCCCeEEEecceeEEecC-ccE-----EEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEE
Q psy12852 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDEL-GYL-----YFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937 (1102)
Q Consensus 864 Y~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d-G~l-----~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~v 937 (1102)
+ +.| ..+||+|||+|+++++ |++ +|+||+||+||++|++|+|.|||++|.++|+|.+++|
T Consensus 300 --~-----~~~-------p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~v 365 (443)
T 2y4o_A 300 --K-----EAM-------PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQ 365 (443)
T ss_dssp --C-----SSS-------CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred --c-----ccC-------hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEE
Confidence 1 111 1579999999999999 997 8999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCceeEEEEEcCC-------CccCHHHHHHHHHccCCCCC-cceEEEEe--cCccCCCCccchhhhhhh
Q psy12852 938 YGVKVGDLDGRAGMIAIVDTS-------NQVDLKLLVQGLDANLPAYA-RPLFVRIM--KAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 938 v~~~~~~~~~~~~l~~~v~~~-------~~~~~~~l~~~l~~~Lp~~~-~P~~i~~l--~~lP~t~~GKidr~~L~~ 1004 (1102)
++++++.. ++ .++++++.. ...+.++++++|+++|+.|+ +|..+.++ ++||+|+|||++|+..++
T Consensus 366 v~~~~~~~-~~-~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 366 ITLSRDGH-MD-RLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp EEEEEETT-EE-EEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred EEEecCCC-Cc-eEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 88766542 33 344444322 23456889999999999985 99888887 599999999999987554
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=416.56 Aligned_cols=326 Identities=11% Similarity=0.051 Sum_probs=256.6
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCch-hhhhHHHHHHhHhhcCceEE
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMY-HSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~-~~~~~~~~i~~~l~~G~~lv 708 (1102)
...++++++|+|||||||.||||+++|+++........ ..++++++|++++.+|+. |..+ +..++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LGAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hHHHHHHHHcCCEEE
Confidence 34668999999999999999999999999987665433 357899999999999984 5554 777889999999999
Q ss_pred EeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccc
Q psy12852 709 IRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 709 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 784 (1102)
+.+.+++..+++.|+++++|+++++|+++..|++..... ...+++.+++|||++++++.+++.+.++. +++|.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI-DAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc-CEEecCC
Confidence 888889999999999999999999999999987753211 13577888999999999999999998864 8999999
Q ss_pred cccCCcc--cccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccc
Q psy12852 785 ATEGNAN--LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862 (1102)
Q Consensus 785 ~TE~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~ 862 (1102)
+||+++. +..... ...|.. .......+.++|+++|.+ +|.|+.||++++ |..
T Consensus 244 ~TE~~g~~~~~~~~~--~~~g~~-----~~~~~~~~~i~d~~~g~~-----------~~~g~~Gel~v~----~~t---- 297 (437)
T 2y27_A 244 LSEVMGPGVASECVE--TKDGPT-----IWEDHFYPEIIDPETGEV-----------LPDGELGELVFT----SLT---- 297 (437)
T ss_dssp ETTTTEEEEEECCTT--TCSSCE-----ECTTTEEEEEECTTTCCB-----------CCTTCCEEEEEE----ESS----
T ss_pred chhhcCCeeEEecCC--CCCcee-----EccCceEEEEEcCCCCCC-----------CCCCCccEEEEe----cCC----
Confidence 9998533 222221 111211 111345666777666654 478888988744 321
Q ss_pred ccCCchHHHHHHhhcccCCCCeEEEecceeEEec-CccE-----EEEccCCCeEEeCceeechHHHHHHHHhcCCcceeE
Q psy12852 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDE-LGYL-----YFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFT 936 (1102)
Q Consensus 863 gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~-dG~l-----~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~ 936 (1102)
+ +.| ..+||+|||+|++++ +|++ +|+||+||+||++|++|+|.|||++|.+||+|.+++
T Consensus 298 ---~-----~~~-------~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~ 362 (437)
T 2y27_A 298 ---K-----EAL-------PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHY 362 (437)
T ss_dssp ---C-----SSS-------CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCC
T ss_pred ---c-----CCc-------hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccE
Confidence 1 111 157999999999999 6996 999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCceeEEEEEcCCCc-----cCHHHHHHHHHccCCCC-CcceEEEEe--cCccCCCCccchhhhhhh
Q psy12852 937 VYGVKVGDLDGRAGMIAIVDTSNQ-----VDLKLLVQGLDANLPAY-ARPLFVRIM--KAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 937 vv~~~~~~~~~~~~l~~~v~~~~~-----~~~~~l~~~l~~~Lp~~-~~P~~i~~l--~~lP~t~~GKidr~~L~~ 1004 (1102)
|++++++. +...+++++..... .+.++++++|+++||.| ++|..+.++ ++||+|+ ||++|+..++
T Consensus 363 vv~~~~~~--~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~R 435 (437)
T 2y27_A 363 QIVLTKEG--PLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVDKR 435 (437)
T ss_dssp EEEEEEET--TEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEECC
T ss_pred EEEEeecC--CCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEecC
Confidence 88876654 33455566543322 35678999999999998 599988888 5999999 9999987543
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=269.74 Aligned_cols=242 Identities=14% Similarity=0.020 Sum_probs=173.9
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhh---hhccCCCCCcEEEEecCc-hhhhhHHHHHHhHhhcCceEEE
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG---KHLLSLGSGDVIYNCLPM-YHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
..++++++|+|||||||+||||+++|+++.+.+.+. ...++++++|++++.+|+ +|..+ +...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g-~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVG-AINKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHH-HHHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhh-HHHHHHHHHcCC-EEE
Confidence 467899999999999999999999999999888744 356788999999999999 88887 666777799999 667
Q ss_pred eCCCCHh-----------------------HHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCH
Q psy12852 710 RTKFSAS-----------------------NYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRG 764 (1102)
Q Consensus 710 ~~~~~~~-----------------------~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~ 764 (1102)
...+++. .+++.|+++++|++.++|+++..|++.... ....+++.+++|||++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7677777 888899999999999999999999876432 223567888999999999
Q ss_pred HHHHHHH-HHhCcchhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCC
Q psy12852 765 DIWAKFV-KRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843 (1102)
Q Consensus 765 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g 843 (1102)
++.+++. +.||+++++|.||+||+++++...... ++|.+....+.. ..+.+.++|+++|+++ |.|
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~--~~G~~~~~~~~~-~~~~v~ivD~~~g~~v-----------p~G 311 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT--SESQQVIYDSFS-PFITYDVVDSITAQTV-----------EYG 311 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC--TTCSSCEEECCT-TTEEEEEECTTTCSBC-----------CTT
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccccc--cCCCcccccCCC-CCeEEEEECCCCCcCC-----------CCC
Confidence 9999999 899777999999999998766433211 244431111112 4567778887666554 889
Q ss_pred CCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecC---------ccEEEEccCCCeEEeCc
Q psy12852 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL---------GYLYFKDRTGDTYRWKG 914 (1102)
Q Consensus 844 ~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d---------G~l~~~GR~dd~Iki~G 914 (1102)
++||+++. +.. ...| --.|+|||++++.+. ..+..++|.|+++||+|
T Consensus 312 ~~GEl~vt----~l~------------~~~~--------l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 312 ERGNVIVT----HLS------------PWAF--------YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp CEEEEEEE----EEE------------TTEE--------EEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred CceEEEEE----EcC------------cccc--------cccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 99998854 221 0011 124999999998653 24778999999999998
Q ss_pred e
Q psy12852 915 E 915 (1102)
Q Consensus 915 ~ 915 (1102)
.
T Consensus 368 v 368 (369)
T 3hgu_A 368 V 368 (369)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-26 Score=231.53 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=135.2
Q ss_pred cccceeee---hhhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeE
Q psy12852 219 HFKGIILE---LHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQE 295 (1102)
Q Consensus 219 ~~~~~~l~---~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~ 295 (1102)
++.+++.+ .+++.+++.++..++...... ...+++|++|+++|+.|+.||||+|+++.+++.++|+||||||++.
T Consensus 31 ~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~ 108 (201)
T 4b9w_A 31 EFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEE 108 (201)
T ss_dssp EEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEccCCEEE
Confidence 35555552 245566666666655443322 2334789999999999999999999999877789999999999999
Q ss_pred ecCCCcccCCccccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcC--C
Q psy12852 296 IPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDL--D 373 (1102)
Q Consensus 296 v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~--~ 373 (1102)
|+.++||+| +++|.++|+||++|+|+||+|.++.|+++|+++|++++ .++.+.+++.....+ .+.|.|++. .
T Consensus 109 v~~~~l~~l--~~~f~~lP~qA~~c~L~~v~p~~~~w~~ea~~~f~~l~--~~k~l~~~V~~~~~~--~~~V~L~d~~~~ 182 (201)
T 4b9w_A 109 VTTDQLQAI--LPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQACV--VGLKLQARVVEITAN--GVGVELTDLSTP 182 (201)
T ss_dssp ECGGGEEEC--CGGGGSSCBCCEEEEESSEECSSSSCCHHHHHHHHHHH--TTCCEEEEEEEEETT--EEEEEEEECSSS
T ss_pred EEHHHhccC--hHhHcccchhhEEEEEcCEEcCCCCCCHHHHHHHHHHH--CCCEEEEEEEEEeCC--EEEEEEEECCCC
Confidence 999999999 99999999999999999999999999999999999994 457777777776665 356778874 3
Q ss_pred CcccHHHHHHHcCcceee
Q psy12852 374 EELNINKELVALDLAKFS 391 (1102)
Q Consensus 374 ~~~~i~~~Lv~~gla~~~ 391 (1102)
.+++||+.|+++|||.++
T Consensus 183 ~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 183 YPKIISDVLIREQLVLRC 200 (201)
T ss_dssp SCEEHHHHHHHTTSSEEC
T ss_pred CccchHHHHHHCcCeecc
Confidence 468999999999999875
|
| >4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-26 Score=236.23 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=136.2
Q ss_pred cccceeee---hhhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeE
Q psy12852 219 HFKGIILE---LHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQE 295 (1102)
Q Consensus 219 ~~~~~~l~---~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~ 295 (1102)
+|.+++++ .+.+.+++.++..++...... ...+++|++|+++|+.|+.||||+|+++.+++.++|+||||||++.
T Consensus 31 ~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~ 108 (226)
T 4b9x_A 31 EFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEE 108 (226)
T ss_dssp EEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTTCCEEE
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEecCCEEE
Confidence 35566552 245566666666655443322 2334789999999999999999999999877789999999999999
Q ss_pred ecCCCcccCCccccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcC--C
Q psy12852 296 IPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDL--D 373 (1102)
Q Consensus 296 v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~--~ 373 (1102)
|+.++||+| ++.|.++|+||++|+|+||+|.++.|+++|+.+|+++ ..++.+.+++.....+. +.|.|++. .
T Consensus 109 v~~~~l~~l--~~~f~~lP~qA~~c~L~~v~p~~~~w~~ea~~~f~~l--~~~k~l~~~V~~~~~~~--~~V~L~d~~~~ 182 (226)
T 4b9x_A 109 VTTDQLQAI--LPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQAC--VVGLKLQARVVEITANG--VGVELTDLSTP 182 (226)
T ss_dssp EEGGGEECC--CGGGSSSCBCCEEEEESSEECSSSSCCHHHHHHHHHH--HTTCCEEEEEEEECSSC--EEEEEEECSSS
T ss_pred EEHHHhccC--hHHHcccccceEEEEEecEECCCCCCCHHHHHHHHHH--HCCCeEEEEEEEEeCCe--EEEEEEECCCC
Confidence 999999999 9999999999999999999999999999999999999 45577888887766653 56788874 3
Q ss_pred CcccHHHHHHHcCcceeeccccc
Q psy12852 374 EELNINKELVALDLAKFSEDANV 396 (1102)
Q Consensus 374 ~~~~i~~~Lv~~gla~~~~~~~~ 396 (1102)
.+++||+.|+++|||..+.....
T Consensus 183 ~~~~I~~~Lv~~gla~~~~~~~~ 205 (226)
T 4b9x_A 183 YPKIISDVLIREQLVLRCGSPQD 205 (226)
T ss_dssp SCEEHHHHHHHTTSSEECC----
T ss_pred CCccHHHHHHHCCCccccCCccc
Confidence 46899999999999988765543
|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=204.44 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=126.3
Q ss_pred hhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 230 LMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 230 l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
+.++++++...+....+......+++|++|+++|+.|+.||||+|+++.+ +.+.|+|+||||++.|+.++||+| |+.
T Consensus 29 l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l--~~~ 105 (218)
T 2wac_A 29 LESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAAL--PPA 105 (218)
T ss_dssp HHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEEC--CGG
T ss_pred HHHHHHHHHHHHhhCCCCCCCccCCcCCEEEEEECCCCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccC--Chh
Confidence 55566666554443221111234589999999999999999999999977 689999999999999999999999 899
Q ss_pred ccCCCcceEEEEeeceecCCC-CCCHHHHHHHHHHHhhhceEEEEEEEeeecCcee-EEEEEEcCCCcccHHHHHHHcCc
Q psy12852 310 ISNLPFQAIECYLAGVEPLEG-VWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRR-YAVELFDLDEELNINKELVALDL 387 (1102)
Q Consensus 310 l~~lP~qA~~c~L~~v~p~~~-~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~-~~v~l~~~~~~~~i~~~Lv~~gl 387 (1102)
|..+|+||++|+|+||+|+.+ .|+.+|.++|++++ .++.+.+.+.....+ . ..|.+++.+++.+||+.|+++|+
T Consensus 106 ~~~~p~~a~~~~Lagv~~p~~~~w~~eA~~~l~~lv--~~k~v~~~v~~~d~g--~~~~V~L~~~~~~~~in~~Lv~~G~ 181 (218)
T 2wac_A 106 FSSEKPYATEYALALVALPTDNEDKEEALRAFSEDV--LNHKVQLNVELKVTG--SPNLATLRDPTTKVDFGKQLVAEGL 181 (218)
T ss_dssp GSSSCCSEEEEEETTEECCSSHHHHHHHHHHHHHHH--BTCEEEEEEEECCTT--SCEEEEEECTTTCCBHHHHHHHTTS
T ss_pred hccCCcceeEEEECCEECCCCcchHHHHHHHHHHHh--cCCEEEEEEEEEcCC--ceEEEEEEeCCCCccHHHHHHHCCC
Confidence 999999999999999997754 89999999999994 456777777664422 4 77888886567899999999999
Q ss_pred ceeec
Q psy12852 388 AKFSE 392 (1102)
Q Consensus 388 a~~~~ 392 (1102)
|....
T Consensus 182 A~~~~ 186 (218)
T 2wac_A 182 VLAEQ 186 (218)
T ss_dssp SEECC
T ss_pred ccccc
Confidence 99863
|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-21 Score=187.89 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=112.8
Q ss_pred hhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcc
Q psy12852 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRP 307 (1102)
Q Consensus 228 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~ 307 (1102)
..+.++++++...... .+. ...+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||.+. .++||+| |
T Consensus 26 ~~L~~L~~~l~~~~~~-~p~--~~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~--v~~lr~l--~ 98 (169)
T 3ntk_A 26 PALEQMTDKLLDAEQD-LPA--FSDLKEGALCVAQFPEDEVFYRAQIRKVLDDGKCEVHFIDFGNNAV--TQQFRQL--P 98 (169)
T ss_dssp HHHHHHHHHHHHHGGG-CCB--CCCCCTTCEEEEEETTTTEEEEEEEEEECSTTCEEEEETTTTEEEE--ESCEECC--C
T ss_pred HHHHHHHHHHHHHHhc-CCC--CCCCCCCCEEEEEECCCCcEEEEEEEEECCCCEEEEEEEecCCeEE--hhhhhcc--C
Confidence 3455555555443321 111 1356899999999999999999999999877789999999999999 4899999 9
Q ss_pred ccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHH
Q psy12852 308 QLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELV 383 (1102)
Q Consensus 308 ~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv 383 (1102)
..|..+|+||++|+|+||+|+++ +.+|.++|+++ ..++.+.+.+....++ ....|.|++.+ .+||+.|-
T Consensus 99 ~~f~~lP~qA~~c~L~~v~~~~~--~~ea~~~f~~l--~~~k~l~~~V~~~~~~-~~~~V~L~~~~--~~in~~L~ 167 (169)
T 3ntk_A 99 EELAKPARYSRHCELDASTISKC--DAALLQSFIDT--RFSETFQVEILATKGT-GTHVVRLFYQS--KNISEKLQ 167 (169)
T ss_dssp HHHHSSCCSSEEEEECGGGSCHH--HHHHHHHHHHT--TTTSEEEEEEEEECTT-SCEEEEEEETT--EEHHHHCT
T ss_pred HHHhhCCceeEEEEECCcCCCCC--hHHHHHHHHHH--hCCCeEEEEEEEecCC-CCEEEEEEECC--CCHHHHhh
Confidence 99999999999999999999865 89999999999 5567777888775444 33558888743 58998874
|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=223.39 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=132.0
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.+++.++...+....+......+.+|++|+++|+ |+.||||+|+++.+++.+.|+||||||++.|+.++||+| |.
T Consensus 388 ~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l--~~ 464 (570)
T 3bdl_A 388 QLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL--SP 464 (570)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC--CG
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEEHHHCccC--CH
Confidence 355566666554443221111234689999999999 899999999999876789999999999999999999999 88
Q ss_pred cccCC--CcceEEEEeeceecCC-CCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHc
Q psy12852 309 LISNL--PFQAIECYLAGVEPLE-GVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVAL 385 (1102)
Q Consensus 309 ~l~~l--P~qA~~c~L~~v~p~~-~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~ 385 (1102)
.|..+ |+||++|+|++|+|+. +.|+++|+.+|+++ ..++.+.+++....++ .+.|.|++.+++.|||+.|+++
T Consensus 465 ~f~~l~lP~qA~~c~La~v~pp~~~~w~~ea~~~f~~l--v~~k~l~~~V~~~~~~--~~~V~L~~~~~~~sIn~~Lv~~ 540 (570)
T 3bdl_A 465 AFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRD--IQNTQCLLNVEHLSAG--CPHVTLQFADSKGDVGLGLVKE 540 (570)
T ss_dssp GGSTTTSCCCCEEEEETTEECCSSHHHHHHHHHHHHHH--HTTEEEEEEEEECCSS--SCEEEEEETTTCCBHHHHHHHT
T ss_pred HHhcCCCCcceEEEEECCeEcCCCCCCcHHHHHHHHHH--hCCCEEEEEEEEEeCC--cEEEEEEECCCCccHHHHHHHC
Confidence 99866 9999999999999775 49999999999999 4467787787766544 4778999876789999999999
Q ss_pred CcceeeccccccC
Q psy12852 386 DLAKFSEDANVCL 398 (1102)
Q Consensus 386 gla~~~~~~~~~l 398 (1102)
|||...+.....+
T Consensus 541 G~A~~~~~~~~~~ 553 (570)
T 3bdl_A 541 GLVMVEVRKEKQF 553 (570)
T ss_dssp TSSEECCCCSGGG
T ss_pred CCeEcchhhhhhH
Confidence 9999986655443
|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-21 Score=202.56 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=58.7
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccccc--CCCcceEEEEeeceecC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLIS--NLPFQAIECYLAGVEPL 328 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~--~lP~qA~~c~L~~v~p~ 328 (1102)
..+.+|++|+++|+ |+.||||+|+++.+++.+.|+||||||++.|+.++||+| +..|. .+|+||++|+|+||+|+
T Consensus 64 ~~~~~G~~c~a~~~-d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l--~~~~~~~~lp~~a~~~~L~~v~~p 140 (246)
T 2hqx_A 64 YAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL--SPAFSTRVLPAQATEYAFAFIQVP 140 (246)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC--CGGGSTTTSCCCC-----------
T ss_pred CCCCCCCEEEEEcC-CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcC--CHhHcCCCCchhhhhhhhhceecC
Confidence 34579999999999 899999999999766689999999999999999999999 88887 78999999999999977
Q ss_pred C-CCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHcCcceeec
Q psy12852 329 E-GVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSE 392 (1102)
Q Consensus 329 ~-~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~~ 392 (1102)
. ..|..+|..+|.+++ .++.+.+.+..... ....+.+++.+.+.+||+.|+++|+|...+
T Consensus 141 ~~~~~~~eA~~~l~~lv--~~k~v~~~v~~~d~--g~~~v~L~~~~~~~~In~~LV~~GlA~~~~ 201 (246)
T 2hqx_A 141 QDDDARTDAVDSVVRDI--QNTQCLLNVEHLSA--GCPHVTLQFADSKGDVGLGLVKEGLVMVEV 201 (246)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCccchHHHHHHHHHHh--cCCEEEEEEEEecC--CeEEEEEEeCCCCccHHHHHHHCCCEEecc
Confidence 5 489999999999884 44555555543322 235567776556789999999999998875
|
| >2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-19 Score=166.29 Aligned_cols=98 Identities=28% Similarity=0.393 Sum_probs=82.6
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.+++.++.+.+..... ....+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||++.|+.++||+| +.
T Consensus 11 ~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l--~~ 86 (110)
T 2diq_A 11 QLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL--RS 86 (110)
T ss_dssp HHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC--CH
T ss_pred HHHHHHHHHHHHHccCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcC--cH
Confidence 355566666555544322 23445899999999999999999999999876789999999999999999999999 88
Q ss_pred cccCCCcceEEEEeeceecCCC
Q psy12852 309 LISNLPFQAIECYLAGVEPLEG 330 (1102)
Q Consensus 309 ~l~~lP~qA~~c~L~~v~p~~~ 330 (1102)
.|..+|+||++|+|++|+|.++
T Consensus 87 ~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 87 DFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp HHHSSCCSSCCSCSSCSCCSCC
T ss_pred HHhCCCcceEEEEECCeEECCC
Confidence 9999999999999999999864
|
| >3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=152.98 Aligned_cols=89 Identities=28% Similarity=0.416 Sum_probs=75.4
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.+++.++.+++....+ ....+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||.+.|+.++||+| +.
T Consensus 6 ~Le~Lm~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l--~~ 81 (94)
T 3fdr_A 6 QLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL--RS 81 (94)
T ss_dssp HHHHHHHHHHHHHTTCCC--CCCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEEC--CG
T ss_pred HHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhc--CH
Confidence 455666777666655432 23456899999999999999999999999876789999999999999999999999 89
Q ss_pred cccCCCcceEEEE
Q psy12852 309 LISNLPFQAIECY 321 (1102)
Q Consensus 309 ~l~~lP~qA~~c~ 321 (1102)
.|.++|+||++|+
T Consensus 82 ~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 82 DFLSLPFQAIECS 94 (94)
T ss_dssp GGGCSCCCCCCC-
T ss_pred HHhcCCcceEEeC
Confidence 9999999999996
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=172.88 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=102.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....|+.+.|.++++.+|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~v 107 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVV 107 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEE
T ss_pred EEecCCCCCHHHHHHHHHhcCceEE
Confidence 9999999999999999999999998
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=175.50 Aligned_cols=148 Identities=9% Similarity=0.028 Sum_probs=119.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....++.+.|.++++++|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++||++++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceeee-hhhhhhhhhccc----ccccccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIILE-LHRLMKLNKEIG----VDVSKTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~l~~l~~~l~----~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
++|++|.++.+++.+++++++++++- ............ ................+++++++.||++++
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGST 176 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTT 176 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSCEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEBSSS
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCceeeeccCCcCCccccCCCCCCCCeEEEEECCCcc
Confidence 99999999999999999999999882 221111111000 001111111112334678999999998763
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=170.14 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=117.9
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.|.++++++|+++|+++.++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee-ehhhhhhhhhcccc------cccccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL-ELHRLMKLNKEIGV------DVSKTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l-~~~~l~~l~~~l~~------~~~~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
+|+|+.++.+++.+++++++++++ .............. ...............+++++++.||++.+
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 226 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGST 226 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSSEEEECCC-------CCCCCCCCCTTSEEEEECCSSCC
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCCcceeeeccccccccccccCCCCCCCCeEEEEECCcCC
Confidence 999999999999999999999998 22222111111100 00000111112334678999999998763
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=167.33 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.++++++|+++|+++.++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+|+.++.+++.+++++++++++
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~l 140 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARML 140 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EeCCCCcHHHHHHHHHhcCCCEE
Confidence 99999999999999999999998
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-14 Score=168.28 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=100.1
Q ss_pred ccccCCCCHH-HHHHHHHhcCCCCcEEEE-----CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q psy12852 118 RMAATNTTLV-SEFKKSVKRRPNAPCYYF-----QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191 (1102)
Q Consensus 118 ~~~~~~~~~~-~~~~~~~~~~p~~~al~~-----~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~ 191 (1102)
|......|+. +.|+++++.+|+++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++
T Consensus 49 ~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 49 ILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp BCCCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred CCCcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 4444456766 999999999999999997 2468999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 192 LGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 192 la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|||+++|++++|+++.++.+++.+++++++++++
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 162 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI 162 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEE
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999988
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=166.70 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCe--eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDE--TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~--~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
...|+.+.|.++++.+|+++|+++.++ ++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 93 (517)
T 3r44_A 14 KMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 93 (517)
T ss_dssp GGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCc
Confidence 346899999999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+|+.++.+++.+++++++++++
T Consensus 94 ~~vpl~~~~~~~~l~~~l~~~~~~~v 119 (517)
T 3r44_A 94 VAVPINTRLAAPEVSFILSDSGSKVV 119 (517)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EEEecCcccCHHHHHHHHHhcCceEE
Confidence 99999999999999999999999988
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=168.53 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=101.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC--------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD--------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 192 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~l 192 (1102)
.+..++.+.|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|+++|++++|
T Consensus 16 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 95 (549)
T 3g7s_A 16 YPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIY 95 (549)
T ss_dssp CCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 345789999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 193 GAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 193 a~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
||+++|++++|+||.++.+++.+++++++++++
T Consensus 96 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~ 128 (549)
T 3g7s_A 96 ALWRVAATPVPINPMYKSFELEHILNDSEATTL 128 (549)
T ss_dssp HHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred HHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999988
|
| >2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=117.71 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=61.3
Q ss_pred ccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceE
Q psy12852 250 KEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAI 318 (1102)
Q Consensus 250 ~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~ 318 (1102)
+..++.|+.|+++|+.+++||||+|.++.+++.++|+|+||||.+.|+.++||+| ++.|..++.+|+
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L--~~~l~~~~~~~~ 85 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKL--EENLKTMGRLSL 85 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTTEEEC--CHHHHTCSSCCC
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccccccC--CHHHhhhhhccC
Confidence 3445899999999999999999999999998899999999999999999999999 888988887763
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=166.03 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
+|+.+.|.++++.+|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+.++.+++.+++++++++++
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~ 102 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLL 102 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEE
T ss_pred eCCCCcHHHHHHHHHhcCCCEE
Confidence 9999999999999999999988
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=162.71 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
.|+.+.|.++++++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47899999999999999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+|+.++.+++.+++++++++++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~ 105 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAA 105 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEE
T ss_pred EecCCccChHHHHHHHhhcCCcEE
Confidence 999999999999999999999887
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=166.36 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..++.+.|.++++.+|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 478999999999999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+|+.++.+++.+++++++++++
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~ 125 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLL 125 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEE
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEE
Confidence 9999999999999999999999998
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=163.99 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=100.7
Q ss_pred cccCCCCHHHHHHHHHhcCCCCcEEEE----CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 119 MAATNTTLVSEFKKSVKRRPNAPCYYF----QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~p~~~al~~----~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
+.....++.+.|.++++.+|+++|+++ .++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 334456899999999999999999994 4578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++++|+|+.++.+++.+++++++++++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 9999999999999999999999999999998
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=165.76 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.|+.+.|.+.++.+|+++|+.+.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp 83 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP 83 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+.++.+++.+++++++++++
T Consensus 84 l~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 84 VDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EETTSCHHHHHHHHHHSCCSEE
T ss_pred cCccccHHHHHHHHHhCCCCEE
Confidence 9999999999999999999988
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=165.90 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.|.++++++|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++.++.+++.+++++++++++
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~l 131 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLL 131 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEE
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEE
Confidence 999999999999999999999998
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-14 Score=177.00 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=116.1
Q ss_pred hHHHHHhhhhHHHHhhhcccch---hHHHHHH---hhhhhhHHHHHHH---H-HhhhcccccccCCCC-HHHHHHHHHhc
Q psy12852 68 DCTLVGIVNPSLFFLRLNQFQD---IRVYIIL---LTLPRDVNIIYSL---S-RAILGTKRMAATNTT-LVSEFKKSVKR 136 (1102)
Q Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~---~~~~~d~~~~~~~---~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (1102)
++..+++.+.+|..+|.||..+ -|...+. .+....-..++.. . ......+||.....| +.+.++++++.
T Consensus 15 ~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~ 94 (663)
T 1ry2_A 15 VPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALK 94 (663)
T ss_dssp ---------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTT
T ss_pred cccccCCChhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHhcc
Confidence 5666778888999999998762 2332211 1111110000000 0 001114678776665 55677788999
Q ss_pred CCCCcEEEE------CCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccch
Q psy12852 137 RPNAPCYYF------QDETWTIKQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWL 209 (1102)
Q Consensus 137 ~p~~~al~~------~~~~~Ty~el~~~~~~~a~~L~-~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~ 209 (1102)
+|+++|+++ .++++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||+++|++++|+++.++
T Consensus 95 ~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 95 TPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp CTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 999999998 3478999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccceee
Q psy12852 210 AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 210 ~~~~~~~l~~~~~~~l 225 (1102)
.+++.+++++++++++
T Consensus 175 ~~~l~~~l~~~~~~~l 190 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVV 190 (663)
T ss_dssp HHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhcCCeEE
Confidence 9999999999999988
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=162.95 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.|.++++++|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++|.++.+++.+++++++++++
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~v 126 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAY 126 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEE
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEE
Confidence 999999999999999999999988
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=162.32 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=97.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC---------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD---------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~ 191 (1102)
....++.+.|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+ +||+|+++++|+++|++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 445789999999999999999999855 799999999999999999999996 9999999999999999999
Q ss_pred HHHHhcCCEEeeccc---cchHHHHhhhhccccceee
Q psy12852 192 LGAAKLGVISKLSNV---VWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 192 la~~~~G~v~~~~~~---~~~~~~~~~~l~~~~~~~l 225 (1102)
|||+++|++++|+|+ .++.+++.+++++++++++
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~v 136 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAI 136 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEE
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEE
Confidence 999999999999999 7889999999999999988
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=162.72 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC----------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD----------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~----------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~ 190 (1102)
....|+.+.|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+ +||+|+++++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 455789999999999999999998742 789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 191 WLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 191 ~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|||+++|++++|+|+.++.+++.+++++++++++
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~ 130 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMA 130 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999977
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=163.96 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=99.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEE---E--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYY---F--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~---~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~ 195 (1102)
....|+.+.+.+.++++|+++|++ + .++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 17 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp CCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 445799999999999999999876 3 45789999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 196 KLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 196 ~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|++++|+|+.++.+++.+++++++++++
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 126 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVV 126 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999988
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=159.56 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCCCcEEE---ECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 128 SEFKKSVKRRPNAPCYY---FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 128 ~~~~~~~~~~p~~~al~---~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
+.|.+.++.+|+++|+. +.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 35678889999998887 467899999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+.++.+++.+++++++++++
T Consensus 84 ~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEE
T ss_pred CCCCCHHHHHHHHHhcCCcEE
Confidence 999999999999999999998
|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-14 Score=107.85 Aligned_cols=52 Identities=25% Similarity=0.483 Sum_probs=46.7
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
+++|+.|+|+|+.|+.||||+|+++.. ++.+.|+|+||||.+.|+.++||||
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 478999999999999999999999974 4578999999999999999999986
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-13 Score=159.85 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=96.5
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
++.+.+.++++ +|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 37888888888 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+.++.+++.+++++++++++
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEE
T ss_pred CcccCHHHHHHHHhccCCeEE
Confidence 999999999999999999988
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-13 Score=162.75 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=99.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
+...++.+.|.++++ |+++|+++.++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 345789999998887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~v 126 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALL 126 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEE
T ss_pred EccCCccccHHHHHHHHhhcCceEE
Confidence 9999999999999999999999988
|
| >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=109.50 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=48.8
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
+++|+.|+|+|+.|+.||||+|+++.+ ++.+.|+|+||||.+.|+.++||++
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCC
Confidence 478999999999999999999999975 4689999999999999999999999
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=159.79 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
+|+.+.|.++++.+|+++|+++.++++||+||.++++++|++|++. |.++|++|+++++|+++|++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999885 888999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+|+.++.+++.+++++++++++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEE
T ss_pred ecCCCChHHHHHHHHHhCCCCEE
Confidence 99999999999999999999988
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=158.79 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=98.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEEC----CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQ----DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~----~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
....|+.+.|.+.++.+|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 34568999999999999999999873 47999999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccccc---hHHHHhhhhccccceee
Q psy12852 197 LGVISKLSNVVW---LAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 197 ~G~v~~~~~~~~---~~~~~~~~l~~~~~~~l 225 (1102)
+|++++|+|+.+ +.+++.+++++++++++
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~v 119 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIV 119 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEE
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEE
Confidence 999999999987 66899999999999988
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=157.26 Aligned_cols=108 Identities=19% Similarity=0.340 Sum_probs=98.0
Q ss_pred ccccCCCC-HHHHHHHHHhc-----CCCCcEEEEC-----CeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCh
Q psy12852 118 RMAATNTT-LVSEFKKSVKR-----RPNAPCYYFQ-----DETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRP 185 (1102)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~-----~p~~~al~~~-----~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~ 185 (1102)
|+.....+ +.+.+.++++. +|+++|+++. ++.+||+||.++++++|++|++. |+++||+|+++++|++
T Consensus 31 ~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 31 QEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp CCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 33333344 46888888888 9999999972 37899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 186 EYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 186 e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++++|||+++|++++|+|+.++.+++.+++++++++++
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 150 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI 150 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999999999999999999988
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-13 Score=170.46 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..|+.+.|.++++++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 468999999999999999999985 679999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+||.++.+++.+++++++++++
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~v 164 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLI 164 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEE
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999998
|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-13 Score=113.88 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=52.1
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccCCcccccc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPIHRPQLIS 311 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~ 311 (1102)
.+++|++|+|+|+.|++||||+|+++.. ++.+.|+|+||||.+.|+.++||+| +..+.
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l--~~~ll 67 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV--QTEAW 67 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEEC--CCCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeC--CHHHh
Confidence 3589999999999999999999999975 4678999999999999999999999 66653
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=170.45 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.++++++|+++|+++.++.+||+||.++++++|+.|++.|+++|++|+++++|++++++++||++++|++++
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v 542 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee-ehhhhhhhhhccc---------ccc-cccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL-ELHRLMKLNKEIG---------VDV-SKTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l-~~~~l~~l~~~l~---------~~~-~~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
|++|.++.+++.+++++++++++ ...........+. ... .............+++++++.||++++
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSGST 619 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTT 619 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCCTTSEEEEEEECCSS
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCCCCCeEEEEeCCCCC
Confidence 99999999999999999999988 2221111110000 000 000111112234678999999998864
|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=108.70 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=49.8
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
..+++|+.|+++|+.|++||||+|+++.+ ++.+.|+|+||||.+.|+.++||+|
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 34589999999999999999999999986 4678999999999999999999999
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-13 Score=158.09 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=93.9
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
|+.+.|.++++++|+++|+++.++++||+||.++++++|++|++. +||+|+++++|+++|++++|||+++|++++|+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 78 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMI 78 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEec
Confidence 566788999999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+.++.+++.+++++++++++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~l 99 (501)
T 3ipl_A 79 NTRLTPNEMTNQMRSIDVQLI 99 (501)
T ss_dssp CTTSCHHHHHHHHHHTTCCEE
T ss_pred CccCCHHHHHHHHHhcCCCEE
Confidence 999999999999999999988
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-13 Score=163.10 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=100.6
Q ss_pred ccccccCCCC-HHHHHHHHHhcCCCCcEEEE------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH
Q psy12852 116 TKRMAATNTT-LVSEFKKSVKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188 (1102)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~ 188 (1102)
.+||.....| +.+.|+++++.+|+++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++++
T Consensus 67 ~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v 146 (652)
T 1pg4_A 67 IKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146 (652)
T ss_dssp EEESTTCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH
T ss_pred CEECCCCChhHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 4677766555 45677788888999999998 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 189 GVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 189 ~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 147 va~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 183 (652)
T 1pg4_A 147 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 183 (652)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999988
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-13 Score=122.41 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=64.5
Q ss_pred ccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCcc---CHHHHHHHHHccCCCC-C
Q psy12852 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQV---DLKLLVQGLDANLPAY-A 978 (1102)
Q Consensus 904 GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~---~~~~l~~~l~~~Lp~~-~ 978 (1102)
.|.||+||++|++|+|.|||++|.+||+|.++++++++++. .++...+++. ...... +.+++.+.+++++..+ .
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~-~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAE-SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEET-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccc-cceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999987765 3333333333 222222 2345555555555433 3
Q ss_pred cceEEEEe--cCccCCCCccchhh
Q psy12852 979 RPLFVRIM--KAIEMTGTFKIKKI 1000 (1102)
Q Consensus 979 ~P~~i~~l--~~lP~t~~GKidr~ 1000 (1102)
+|..+.++ ++||+| +||++|-
T Consensus 80 v~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CccceEEEcCCeecCC-CCCcchh
Confidence 55556666 479999 7999883
|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-13 Score=110.93 Aligned_cols=53 Identities=26% Similarity=0.479 Sum_probs=48.9
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCcccC
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
.+++|+.|+|+|+.|+.||||+|+++..+ +.+.|+|+||||.+.|+.++||+|
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l 70 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 70 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEEC
Confidence 35899999999999999999999999743 578999999999999999999999
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=155.67 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCHHH-HHHHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 124 TTLVS-EFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 124 ~~~~~-~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
.++.+ .+.+.++.+ +++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47888 888888889 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+|+.++.+++.+++++++++++
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~v 128 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIV 128 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEE
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999998
|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-13 Score=112.51 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=50.2
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccCCcccccc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPIHRPQLIS 311 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~ 311 (1102)
.+++|+.|+|+|+.|+.||||+|.++.. .+.+.|+|+||||.|.|+.++||++ +..|.
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~--~~~~~ 68 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP--ICEVA 68 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC--C----
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC--Chhhc
Confidence 4589999999999999999999999975 4688999999999999999999999 77664
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-13 Score=122.02 Aligned_cols=66 Identities=8% Similarity=-0.014 Sum_probs=60.8
Q ss_pred HHHHhhhcCCCcchhh-hhhhcCCCCccccccCchhhHHHHHHhhhCC-C-CccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIG-EIKQSDPSRHFYGYADKKESQKKILENVFKP-G-DKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~-~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g-~~l~~~~l~~~pti~~laa 1096 (1102)
...++.|..+|+++|+ . +.|++++|||++|||||+|++|+.+|++. | +.+++.+||++|||++||+
T Consensus 24 ~~~E~~La~iW~~vL~~~-~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~ 92 (110)
T 2cq8_A 24 LVTAEAVRSVWQRILPKV-LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQ 92 (110)
T ss_dssp HHHHHHHHHHHHHHCSSC-SCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHH
Confidence 4467888899999998 6 78999999999999999999999999986 8 9999999999999999986
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-12 Score=148.82 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHhcCCC-CcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPN-APCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~-~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.++.+.+.+.++.+|+ ++|+++.++++||+||.++++++|++|+ .|++|+++++|++++++++||++++|++++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~v 96 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV 96 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEE
Confidence 4667777778888887 9999999999999999999999998774 489999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceeeehhh---hhhhhhccccc-cc-ccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIILELHR---LMKLNKEIGVD-VS-KTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l~~~~---l~~l~~~l~~~-~~-~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
|+||.++.+++.+++++++++++-... .......+... .. ............+++++++.||++.+
T Consensus 97 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 167 (505)
T 3nyq_A 97 PLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTT 167 (505)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCCCCCCCTTSEEEEEEECCSS
T ss_pred EcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCCCCCCCCCCeEEEEeCCCCc
Confidence 999999999999999999999982211 11111111000 00 00111112234678889999987753
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-12 Score=152.08 Aligned_cols=69 Identities=9% Similarity=0.165 Sum_probs=0.0
Q ss_pred CHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+.+..|+.|..+|+++|+. +.|+++||||++|||||+|++|+++|++.|+.+++.+||++|||++||+.
T Consensus 42 p~~~~e~~l~~~w~~~l~~-~~i~~~~~ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~~~~t~~~la~~ 110 (508)
T 4f6l_B 42 PSNEIEQTFVDVFGEVLKQ-NDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNY 110 (508)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCCCCCChHHcCchHHHHHHHHHHHHHcCCCccHHHHhcCCcHHHHHHH
Confidence 3444688899999999999 78999999999999999999999999988999999999999999999975
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-12 Score=114.95 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=62.1
Q ss_pred HHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..++.+..+|+++|+. +.+++++|||++|||||+|++|+.+|++. |+.+++.++|++|||++||+
T Consensus 14 ~~~~e~~l~~i~~~vL~~-~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~ 81 (93)
T 4i4d_A 14 RRALERDIAAIWAETLGR-DSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTD 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHTC-SCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHH
Confidence 445678888999999998 88999999999999999999999999987 99999999999999999985
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-12 Score=112.62 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=60.8
Q ss_pred HHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1031 TYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
..++.+..+|+++|+. +.+++++|||++|||||.|++|+.+|++. |+.+++.++|++||+++||+.
T Consensus 14 ~~e~~l~~i~~~vL~~-~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~ 80 (91)
T 1dny_A 14 AVESKLAEIWERVLGV-SGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQY 80 (91)
T ss_dssp HHHHHHHHHHHHHHTC-SSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence 3677888899999998 78999999999999999999999999876 999999999999999999863
|
| >2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.3e-10 Score=89.81 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=51.3
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLIS 311 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~ 311 (1102)
..+++|+.|+|+|+ |+.||||+|.++.+++.+.|+|.|| |.+.|+.++||+| |..+.
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrpl--p~~~k 64 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAM--PEDAK 64 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTTSSEEEEETTS-CEEEECGGGEECC--CGGGT
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCCCEEEEEEecC-CeEEecHHHCeeC--ChhHh
Confidence 34589999999999 9999999999998777899999999 9999999999999 76543
|
| >2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-10 Score=92.99 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
..+++|+.|+|+|+ |+.||||+|+++..++.+.|+|.| ||.|.|+.++|||+ +.+
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~~~~~y~V~F~D-Gn~E~V~~s~LrPl--~~~ 59 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF--SKD 59 (81)
Confidence 34589999999999 999999999999877789999999 99999999999999 654
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-08 Score=114.09 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCcchhh-hccccccCCcccccCCC-CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccccc
Q psy12852 764 GDIWAKFVKRFHVQTII-EFYGATEGNANLVNMDN-TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841 (1102)
Q Consensus 764 ~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~ 841 (1102)
..-..++...+|+..++ ..|++||+-+..-..+. .+...+... .+.. .=..++.+++. .++....+..+.
T Consensus 311 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L--~~~~-~ffEFip~~~~-----~~~~~v~l~eVe 382 (581)
T 4eql_A 311 GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTF--MPNM-SYFEFIPMDGG-----DKNDVVDLEDVK 382 (581)
T ss_dssp GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEE--CTTS-SEEEEEECSTT-----CCSSCEEGGGCC
T ss_pred HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCceee--cCCc-EEEEEEecccc-----CCCcEeCHHHcC
Confidence 34445565656665666 99999996433211111 111222211 1110 01122222321 122334567778
Q ss_pred CCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEec----CccEEEEccCCCeEEeCceee
Q psy12852 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE----LGYLYFKDRTGDTYRWKGENV 917 (1102)
Q Consensus 842 ~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~----dG~l~~~GR~dd~Iki~G~ri 917 (1102)
.|+.+|+++. .. .|.+ -||+||++++.. ..++.|+||.|+++.++|.+|
T Consensus 383 ~G~~YelViT----t~----~GL~-------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl 435 (581)
T 4eql_A 383 LGCTYEPVVT----NF----AGLY-------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKT 435 (581)
T ss_dssp TTCEEEEEEE----CS----SSCC-------------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCE
T ss_pred CCceEEEEEe----ec----ccee-------------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeEC
Confidence 8999998854 11 1211 199999999986 468999999999999999999
Q ss_pred chHHHHHHHHhcC
Q psy12852 918 STMEVEATISKYL 930 (1102)
Q Consensus 918 ~~~eIE~~l~~~~ 930 (1102)
...+||.+|.+.-
T Consensus 436 ~~~~v~~al~~a~ 448 (581)
T 4eql_A 436 NEEDLFKAVSQAK 448 (581)
T ss_dssp EHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998543
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.2e-07 Score=105.72 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCcchhh-hccccccCCcccccCCC-CCCcccccCCCCCCcCCCeeeEEeecCCCC---CcCCCCCcccc
Q psy12852 764 GDIWAKFVKRFHVQTII-EFYGATEGNANLVNMDN-TEGAVGIIPTLLPTFLHPVAIIQFDLVENQ---PIRDPKTGLCI 838 (1102)
Q Consensus 764 ~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~---~i~~~~~~~~~ 838 (1102)
..-..++...+++..++ ..|++||+-+..-..+. .++..+... .|.. .=..++.+++. +. .-.++..-.+.
T Consensus 316 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L--~p~~-~ffEFIP~~~~-~~~~~~~~~~~~v~l~ 391 (609)
T 4b2g_A 316 AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI--MPNM-AYFEFLPHEHS-SIPLSRDSPPRLVDLA 391 (609)
T ss_dssp GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEE--CTTS-CEEEEEEGGGT-TSCCCSSSCCCCEEGG
T ss_pred HHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCcccCceee--cCCc-EEEEEEecccc-ccccccCCCCccccHh
Confidence 33345555555555565 99999997433222111 111222211 1110 00122222321 00 11122234567
Q ss_pred cccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEec----CccEEEEccCCCeEEeCc
Q psy12852 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE----LGYLYFKDRTGDTYRWKG 914 (1102)
Q Consensus 839 ~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~----dG~l~~~GR~dd~Iki~G 914 (1102)
.+..|+.+|+++. . ..|+++ ||+||++++.. ..++.|+||.+++++++|
T Consensus 392 eVe~G~~YelViT----t----~~GL~R-------------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~G 444 (609)
T 4b2g_A 392 HVEVGKEYELVIT----T----YAGLYR-------------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDS 444 (609)
T ss_dssp GCCTTCEEEEEEE----C----TTSCCS-------------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSS
T ss_pred HcCCCCeEEEehh----h----hhhhhh-------------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccc
Confidence 7888999998854 1 123322 99999999984 578999999999999999
Q ss_pred eeechHHHHHHHHh
Q psy12852 915 ENVSTMEVEATISK 928 (1102)
Q Consensus 915 ~ri~~~eIE~~l~~ 928 (1102)
.+|...+||.+|.+
T Consensus 445 eki~~~~v~~av~~ 458 (609)
T 4b2g_A 445 DKTDEAELQKAVDN 458 (609)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999999974
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=101.80 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=77.7
Q ss_pred HHHHHHHHhCcchhh-hccccccCCcccccCCCC-CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCC
Q psy12852 766 IWAKFVKRFHVQTII-EFYGATEGNANLVNMDNT-EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843 (1102)
Q Consensus 766 ~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g 843 (1102)
-..++.+.+++..++ ..|++||+-+..-..+.. ++..+... .|.. .=..++.+++. +. .++..-.+..+..|
T Consensus 318 Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L--~p~~-~ffEFiP~~~~-~~--~~~~~v~l~eve~G 391 (581)
T 4epl_A 318 YVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAV--IPNL-GYFEFLPVSET-GE--GEEKPVGLTQVKIG 391 (581)
T ss_dssp GHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEE--CTTS-CEEEEEEC----------CCCEEGGGCCTT
T ss_pred HHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceee--cCCc-EEEEEEecccc-cC--CCCceeeHHHcCCC
Confidence 335565556666666 999999974333222211 11222211 1110 01122222322 11 12233456788899
Q ss_pred CCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecC----ccEEEEccCCCeEEeCceeech
Q psy12852 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL----GYLYFKDRTGDTYRWKGENVST 919 (1102)
Q Consensus 844 ~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d----G~l~~~GR~dd~Iki~G~ri~~ 919 (1102)
+.+|+++. .. .|.+ -||+||++++..- ..+.|+||.|++++++|.++..
T Consensus 392 ~~YelviT----t~----~GL~-------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~ 444 (581)
T 4epl_A 392 EEYEVVIT----NY----AGLY-------------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTE 444 (581)
T ss_dssp CEEEEEEE----ST----TSCS-------------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred CeEEEEEe----ec----ccee-------------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCH
Confidence 99998854 11 1211 1999999999753 5799999999999999999999
Q ss_pred HHHHHHHHh
Q psy12852 920 MEVEATISK 928 (1102)
Q Consensus 920 ~eIE~~l~~ 928 (1102)
.+||.+|.+
T Consensus 445 ~~v~~al~~ 453 (581)
T 4epl_A 445 RDLQLSVES 453 (581)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.6e-09 Score=92.02 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=61.8
Q ss_pred cCHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1027 MTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1027 ~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
...+..++.+...|+.+++. .+.++.+++||++|||||.++++...+++. |+.+++.++|++||+++||+
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~ 81 (88)
T 2afd_A 10 ASVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAK 81 (88)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHH
Confidence 44556777788888899886 367999999999999999999999999876 99999999999999999875
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-09 Score=93.59 Aligned_cols=67 Identities=7% Similarity=0.120 Sum_probs=59.1
Q ss_pred HHHHhhhcCCCcchhh-h-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIG-E-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~-~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+..++.+...|+.+|+ . .+.++.+++||++|||||.++++...+++. |+.+++.++|.+||+++||+
T Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~ 88 (95)
T 2ju1_A 19 AELVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAG 88 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHH
Confidence 3456677788888888 3 468999999999999999999999999876 99999999999999999875
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.5e-09 Score=116.91 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.|+.+..+|+++||. +.|+.++|||++|||||+|++|+++|++. |+.+++.++|++|||++||+
T Consensus 12 ~e~~l~~~~~~~l~~-~~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~ 76 (329)
T 3tej_A 12 SETIIAAAFSSLLGC-DVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLAT 76 (329)
T ss_dssp HHHHHHHHHHHHHTC--CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence 577788899999998 77999999999999999999999999887 99999999999999999975
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-09 Score=93.87 Aligned_cols=69 Identities=4% Similarity=-0.035 Sum_probs=60.7
Q ss_pred CHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+..++.+...|+.+++. .+.++.+++||++|+|||.++++...+++. |+.+++.++|.+||+++||+
T Consensus 18 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~ 88 (99)
T 2liu_A 18 NLSEIKQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSG 88 (99)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHH
Confidence 4555677777888888876 467999999999999999999999999886 99999999999999999875
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-09 Score=123.28 Aligned_cols=65 Identities=9% Similarity=0.181 Sum_probs=60.6
Q ss_pred HHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1031 TYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..|+.+..+|+++||. +.|+.++|||++|||||+||++++++++. |+.+++.+||++|||++||+
T Consensus 10 ~~e~~l~~iw~~vL~~-~~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~ 75 (520)
T 2jgp_A 10 VWEARLAQVWEQVLNV-PQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAA 75 (520)
T ss_dssp HHHHHHHHHHHHHHTC-SCCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHH
Confidence 3678888899999998 78999999999999999999999999987 99999999999999999975
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-08 Score=88.62 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=58.4
Q ss_pred HHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccce--EEEEeccccccccCC
Q psy12852 1031 TYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFL--SVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~--~~l~~~pti~~laa~ 1097 (1102)
..++.+...|+.+++. .+.++.+++||++|+|||.+++++..+++. |+.++. .++|.+||+++|++.
T Consensus 11 ~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~ 81 (89)
T 2kr5_A 11 EKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDF 81 (89)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHH
Confidence 3566677778888876 367999999999999999999999999876 999999 999999999998753
|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-06 Score=69.54 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
+.++.|+-|+|+| +|+.||.|+|+++.++..+.|.|-| |+++.|...+|+++ +..
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~--~~~ 59 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF--SKD 59 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGGGEEEC--C--
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCCCeEEEEEeC-CceEEEeHHHcccC--Ccc
Confidence 4568999999999 8999999999999988889999999 99999999999999 543
|
| >3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=70.94 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=49.2
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
..+.+|+-|+|+| .|+.||.|+|+++.++..+.|.|-| |+++.|...+|+++ |..
T Consensus 20 ~~f~vGd~VlArW-~D~~yYPAkI~sV~~~~~YtV~F~D-G~~etvk~~~IKp~--~~~ 74 (85)
T 3qii_A 20 SEFQINEQVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF--SKD 74 (85)
T ss_dssp -CCCTTCEEEEEC-TTSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGGGEEEC--C--
T ss_pred cccccCCEEEEEe-CCCCEeeEEEEEECCCCeEEEEEeC-CCeEEecHHHcccC--Chh
Confidence 4558999999999 8999999999999988899999999 99999999999999 544
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-07 Score=98.75 Aligned_cols=88 Identities=6% Similarity=-0.048 Sum_probs=59.0
Q ss_pred ccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHH
Q psy12852 989 IEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQK 1067 (1102)
Q Consensus 989 lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~ 1067 (1102)
-|-|.|||.++..-.... ...+..++.+..+|+++|+. .+.|+.+++||++|+|||.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~l~~~~a~~l~~~~~~i~~~~~f~~lG~DSl~~~ 63 (212)
T 2l22_A 4 SHHHHHHSSGLVPRGSHM--------------------VADDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAA 63 (212)
T ss_dssp --------------------------------------CCTTHHHHHHHHHHHHHTTCCTTSCCTTCBHHHHTCCHHHHH
T ss_pred ccccccccCCCCccCCCC--------------------CCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCCcHHHHH
Confidence 466788888875443221 12233566677788888886 367999999999999999999
Q ss_pred HHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1068 KILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1068 ~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+|+.+|++. |+.++..++|.+||+++||+
T Consensus 64 el~~~l~~~~g~~l~~~~~~~~~Ti~~la~ 93 (212)
T 2l22_A 64 QWIREINKHYQLKIPADGIYTYPVFKAFTQ 93 (212)
T ss_dssp HHHHHHHHHTTCCCCTTHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHcCCCHHHHHH
Confidence 999999865 99999999999999998875
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-07 Score=78.29 Aligned_cols=65 Identities=6% Similarity=0.003 Sum_probs=55.2
Q ss_pred HhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1033 EKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++.+..+|+.+++. .+.++++++|| ++|+|||.+++++..+++. |+.++..+++.++|+++|++.
T Consensus 5 ~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~ 72 (78)
T 1l0i_A 5 EERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDY 72 (78)
T ss_dssp HHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHH
Confidence 34455566777775 36799999998 9999999999999999875 999999999999999998753
|
| >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=5.1e-07 Score=77.58 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=57.7
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..++.+..+|+.+++. .+.++++++|| ++|+|||.+++|+..+++. |+.++..+++.++|+++|++
T Consensus 5 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 75 (82)
T 2cnr_A 5 QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHH
Confidence 344556666777777776 35799999997 9999999999999999875 99999999999999999875
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-07 Score=78.42 Aligned_cols=67 Identities=4% Similarity=-0.035 Sum_probs=57.1
Q ss_pred HHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+..++.+..+|+.+++. .+.++++++|| ++|+|||.+++++..++++ |+.++..+++.++|+++|++
T Consensus 5 ~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 74 (81)
T 2lol_A 5 DKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIK 74 (81)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHH
Confidence 34555666677777776 35799999997 9999999999999999875 99999999999999999875
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-07 Score=77.60 Aligned_cols=63 Identities=6% Similarity=-0.007 Sum_probs=53.7
Q ss_pred hhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1034 KIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1034 ~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+.+..+|+.+++. .+.++.+++| +++|+|||.+++++..+++. |+.++..+++.++|+++|++
T Consensus 4 ~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~ 69 (77)
T 2ehs_A 4 ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVIN 69 (77)
T ss_dssp HHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHH
T ss_pred HHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHH
Confidence 3444556666665 3579999999 99999999999999999875 99999999999999999875
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.6e-07 Score=78.49 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=55.6
Q ss_pred HHhhhcCCCcchhhhh-h-hcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGEI-K-QSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~-~-~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.++.+..+|+.+++.. + .++++++|+++|+|||.+++|+..+++. |+.++..+++.++|+++|++
T Consensus 5 i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 72 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAAD 72 (82)
T ss_dssp HHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHH
Confidence 3455666777777762 2 7999999999999999999999999874 99999999999999999875
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.2e-07 Score=77.10 Aligned_cols=67 Identities=3% Similarity=-0.110 Sum_probs=57.6
Q ss_pred HHHHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+..++.+..+|+.+++. .+.++++.+| +++|+|||.+++++..+++. |+.++..+++.++|+++|++
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 73 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVE 73 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHH
Confidence 34455666777788876 3579999999 99999999999999999875 99999999999999999875
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.8e-07 Score=92.45 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=59.9
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.+..++.+...|+.+++. .+.++.+++||++|+|||.+++|+..|++. |+.+++.++|++|||++||+.
T Consensus 128 ~~~i~~~l~~~~~~~l~~~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~ 198 (212)
T 2l22_A 128 RESIQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADE 198 (212)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHH
Confidence 344566777888888886 367999999999999999999999999875 999999999999999999853
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.5e-06 Score=77.44 Aligned_cols=71 Identities=8% Similarity=-0.079 Sum_probs=60.6
Q ss_pred ecCHHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1026 RMTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1026 ~~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+++.+..++.+..+|+.+++. .+.|+.+.+|| ++|+|||.+++|+..|+++ |+.++..+++.++|+++|++
T Consensus 10 ~m~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~ 83 (99)
T 2dnw_A 10 PLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVD 83 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence 355666777777778888776 46799999997 9999999999999999864 99999999999999999875
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=97.68 E-value=1.1e-06 Score=75.33 Aligned_cols=66 Identities=3% Similarity=-0.190 Sum_probs=55.4
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhC-CCCccceEEEEeccccccccCC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFK-PGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~-~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
..+.+..+++.+++. .+.++.+.+| +++|+|||.+++++..+++ +|+.++..+++.++|+++|++.
T Consensus 8 i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~ 76 (81)
T 1f80_D 8 TLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNY 76 (81)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHH
Confidence 344555566666665 3579999999 9999999999999999986 4999999999999999998864
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.7e-07 Score=77.16 Aligned_cols=65 Identities=5% Similarity=-0.055 Sum_probs=55.3
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.++.+..+|+.+++. .+.++++.+| +++|+|||.+++++..+++. |+.++..+++.++|+++|++
T Consensus 5 i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 72 (79)
T 2l3v_A 5 TAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVK 72 (79)
T ss_dssp HHHHHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHH
T ss_pred HHHHHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHH
Confidence 344555667777775 3579999999 99999999999999999864 99999999999999999975
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=2.4e-06 Score=73.42 Aligned_cols=62 Identities=8% Similarity=-0.083 Sum_probs=51.2
Q ss_pred hcCCCcchhhhh-h-hcC--CCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1036 MNDQPGMIIGEI-K-QSD--PSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1036 l~~~~~~~l~~~-~-~i~--~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+..+|+..++.. . .++ .+.+|+++|+|||.+++|+..+++. |+.++..+++.++|+++|++.
T Consensus 9 l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~ 75 (83)
T 1or5_A 9 LKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDE 75 (83)
T ss_dssp HHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHH
T ss_pred HHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHH
Confidence 344555566652 2 577 8999999999999999999999875 999999999999999998753
|
| >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=5.8e-06 Score=75.81 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=57.3
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+...+.+..+|..+++. .+.++.+.+|| ++|+|||.+++|+..|++. |+.++..+++.++|+++|++
T Consensus 5 ~~~i~~~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~ 75 (115)
T 1klp_A 5 QEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVA 75 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHH
Confidence 344556666777777776 35799999997 9999999999999999875 99999999999999998874
|
| >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.8e-06 Score=70.56 Aligned_cols=65 Identities=2% Similarity=-0.124 Sum_probs=55.6
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..+++..++. .+.++++.+|+ ++|.|||.++.|+.++++. |+.++..+++.++|+++|++
T Consensus 6 i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 73 (81)
T 3gzm_A 6 TFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAID 73 (81)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHH
Confidence 445566667777775 46799999997 9999999999999999875 99999999999999999875
|
| >2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=7.6e-06 Score=88.71 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=46.5
Q ss_pred hhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccC
Q psy12852 1048 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa 1096 (1102)
+.++.++||+++|+||+.+|+|+.++|+.|+.+++.++|++|||+++++
T Consensus 232 ~~i~~~~nL~~lGlDSi~~m~l~~~~~~~g~~~~~~~l~~~ptl~~~~~ 280 (287)
T 2fq1_A 232 DEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWK 280 (287)
T ss_dssp SCCCTTSCSGGGTCCTTHHHHHHHHHTTTCTTCCHHHHHTSCSHHHHHH
T ss_pred hhcCCCCCHHHhCccHHHHHHHHHHHHHcCCCCCHHHHHhCccHHHHHH
Confidence 5799999999999999999999999999999999999999999998864
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.65 E-value=1.4e-05 Score=71.32 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=57.6
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCCC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPPN 1098 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~~ 1098 (1102)
..+.+..+++.+++. .+.|+++.+|.++|.|||.++.|+..|+++ |+.++..+++..+|+++|++..
T Consensus 27 i~~~l~~ila~~l~i~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I 95 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLV 95 (103)
Confidence 445566677777776 367999999999999999999999999875 9999999999999999998753
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=4.1e-06 Score=73.75 Aligned_cols=48 Identities=4% Similarity=-0.071 Sum_probs=44.8
Q ss_pred hcCCCCccccccCchhhHHHHHHhhhC-CCCccceEEEEeccccccccC
Q psy12852 1049 QSDPSRHFYGYADKKESQKKILENVFK-PGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1049 ~i~~~~~Ff~lGgdSl~a~~l~~~l~~-~g~~l~~~~l~~~pti~~laa 1096 (1102)
.++.+.+|+++|+|||.+++|+.+|++ +|+.++..+++.++|+++|++
T Consensus 27 ~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~ 75 (95)
T 1nq4_A 27 GDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIE 75 (95)
T ss_dssp SCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHH
T ss_pred cCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHH
Confidence 689999999999999999999999986 599999999999999998875
|
| >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.8e-06 Score=70.79 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=54.5
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..+++..++. .+.++++.+|| ++|.|||.+++|+..++++ |+.++..+++..+|+++|++
T Consensus 8 i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 75 (82)
T 2qnw_A 8 LLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALS 75 (82)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHH
Confidence 344455566666765 36799999995 9999999999999999875 99999999999999999875
|
| >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=97.38 E-value=1.2e-05 Score=69.19 Aligned_cols=69 Identities=6% Similarity=-0.082 Sum_probs=57.6
Q ss_pred CHHHHHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+.+...+.+..+++..++. .+.++++.+| .++|.|||.+++|+..++++ |+.++..+++..+|+++|++
T Consensus 6 ~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 77 (84)
T 2kwl_A 6 DNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVN 77 (84)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHH
Confidence 3444555666667777775 3689999999 99999999999999999875 99999999999999999875
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=1.6e-05 Score=68.75 Aligned_cols=48 Identities=8% Similarity=-0.167 Sum_probs=44.5
Q ss_pred hcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1049 QSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1049 ~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.++++.+|+++|.|||.+++|+..++++ |+.++..+++..+|+++|++
T Consensus 28 ~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 76 (86)
T 1af8_A 28 GDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLD 76 (86)
T ss_dssp TCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHH
T ss_pred cCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHH
Confidence 5789999999999999999999999875 99999999999999998875
|
| >2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00042 Score=52.86 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=48.0
Q ss_pred ccccCCCceeEEEeCCCCcEEEeEeeecCCCc-cEEEEEEecCCeeEecCCCcccC
Q psy12852 250 KEQCHPGLLCLARSDDKSGYNRVQVTDTSDSE-LAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 250 ~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
....+.|+.+++++..|+.+|-|+|+++...+ .+.|.|-| |+.+.+.-++||++
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKd-gT~e~L~~kDIKp~ 64 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKD-GTELELKENDIKSG 64 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTT-SCEEEEETTTEECC
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEeccCCceEEEEecC-CCEEEechhccccC
Confidence 34558999999999999999999999998444 46999999 99999999999999
|
| >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=1.7e-05 Score=70.99 Aligned_cols=64 Identities=3% Similarity=-0.003 Sum_probs=51.0
Q ss_pred HhhhcCCCcchhhh---hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEE--eccccccccC
Q psy12852 1033 EKIMNDQPGMIIGE---IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAP 1096 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~---~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa 1096 (1102)
++.+..+|..+++. .+.|+.+++|+++|.|||.+++|+..|+++ |+.++..+++ .++|++.|++
T Consensus 24 ~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~ 93 (105)
T 2jq4_A 24 NATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIED 93 (105)
T ss_dssp HHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHH
Confidence 33444455555431 368999999999999999999999999875 9999999998 7888888764
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=97.23 E-value=1.6e-05 Score=68.28 Aligned_cols=57 Identities=5% Similarity=0.036 Sum_probs=47.9
Q ss_pred CCcchhhh--hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1039 QPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1039 ~~~~~l~~--~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+|+. .+.|.++.+|+++|.|||.++.|.++|++. |+.++..+++. +|+.+|+.
T Consensus 14 ~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~-~Ti~~La~ 73 (91)
T 2cg5_B 14 AVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQE 73 (91)
T ss_dssp HHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHH
T ss_pred HHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHh-CCHHHHHH
Confidence 34445554 267999999999999999999999999875 99999999877 69988875
|
| >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=1.5e-05 Score=70.33 Aligned_cols=65 Identities=6% Similarity=0.012 Sum_probs=54.5
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..++++.++. .+.++.+.+|+ ++|.|||.++.|+..|+++ |+.++..+++..+|+++|++
T Consensus 23 i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~ 90 (97)
T 3ejb_A 23 IEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAID 90 (97)
T ss_dssp HHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence 445555566666665 46899999997 9999999999999999864 99999999999999998875
|
| >2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00055 Score=52.13 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=47.3
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCc-cEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSE-LAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
...+.|+.++++++.|+.+|-|+|+++.+.+ .+.|.|=| |+.+.+.-++||++
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKd-gT~e~L~~kDIkp~ 61 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKD-GTELALKESDIRLQ 61 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEECS
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecC-CCEEeechhccccc
Confidence 3458999999999999999999999998444 46999999 99999999999998
|
| >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00011 Score=64.85 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=51.3
Q ss_pred hhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1035 IMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1035 ~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..+.+..++. .+.+.++.+|.++|.|||.++.|+..|+++ |+.++..++...+|+++|++
T Consensus 21 ~l~~ila~~l~v~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~ 84 (100)
T 1vku_A 21 KFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLID 84 (100)
T ss_dssp HHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHH
T ss_pred HHHHHHHHHHCCCHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHH
Confidence 334444445554 357999999999999999999999999875 99999999999999998875
|
| >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00021 Score=61.89 Aligned_cols=65 Identities=3% Similarity=-0.122 Sum_probs=53.5
Q ss_pred HHhhhcCCCcchh---hh-hhhcCCCCcc-ccccCchhhHHHHHHhhhC-CCCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMII---GE-IKQSDPSRHF-YGYADKKESQKKILENVFK-PGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l---~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~-~g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..+.+.++ +. .+.++.+.+| -++|.|||.++.|+..+++ +|+.++..++...+|+++|++
T Consensus 9 i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~ 79 (88)
T 2l4b_A 9 IKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICR 79 (88)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHH
Confidence 3444555566666 54 3679999999 5999999999999999986 499999999999999998875
|
| >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00052 Score=58.01 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=49.5
Q ss_pred hcCCCcchhhh-hhhcCCCCcccccc-CchhhHHHHHHhhhCC-CCccceEEEE--eccccccccC
Q psy12852 1036 MNDQPGMIIGE-IKQSDPSRHFYGYA-DKKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAP 1096 (1102)
Q Consensus 1036 l~~~~~~~l~~-~~~i~~~~~Ff~lG-gdSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa 1096 (1102)
+..+++..++. ...+..+.+|+++| .|||.+++|+..|+++ |+.++..++. ..+|++++++
T Consensus 9 i~~il~~~~~~~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~ 74 (80)
T 1dv5_A 9 VLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIA 74 (80)
T ss_dssp HHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHH
T ss_pred HHHHHHHHhCCCcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHH
Confidence 33344455554 24689999999999 9999999999999875 9999999888 8889988765
|
| >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00024 Score=63.14 Aligned_cols=58 Identities=17% Similarity=0.020 Sum_probs=45.8
Q ss_pred CCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEE-----------EeccccccccC
Q psy12852 1039 QPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVI-----------IRNFSLDVMAP 1096 (1102)
Q Consensus 1039 ~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l-----------~~~pti~~laa 1096 (1102)
+.+..++. .+.++++.+|+ ++|.|||.++.|+..|++. |+.++..++ |.+||+++|++
T Consensus 11 ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~ 82 (101)
T 2kw2_A 11 IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAA 82 (101)
T ss_dssp HHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHH
T ss_pred HHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHH
Confidence 34444443 36799999995 9999999999999999874 999988763 66777998874
|
| >4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00024 Score=62.88 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=51.2
Q ss_pred hcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1036 MNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1036 l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+..+++..++. .+.+.++.+| .++|.|||.++.|+..|+++ |+.++..++...+|+++|++.
T Consensus 31 l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~ 95 (101)
T 4dxe_H 31 VKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKF 95 (101)
T ss_dssp HHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHH
T ss_pred HHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence 33344445554 4679999999 89999999999999999864 999999999999999988753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0011 Score=92.14 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HhhhcCCCcchhhh--hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1033 EKIMNDQPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~--~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++.+...|+++|+. .+.|+++++||++|||||.|++|.+.++++ |..+++.+|+. +|++.||+.
T Consensus 2125 ~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~ 2191 (2512)
T 2vz8_A 2125 QKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQEL 2191 (2512)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHH
Confidence 45677889999997 256999999999999999999999999876 99999999988 898888764
|
| >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0011 Score=57.69 Aligned_cols=49 Identities=6% Similarity=-0.071 Sum_probs=18.1
Q ss_pred hhcCCCCccccccCchhhHHHHHHhhhCC-CCccc---eEEEEeccccccccC
Q psy12852 1048 KQSDPSRHFYGYADKKESQKKILENVFKP-GDKYF---LSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~---~~~l~~~pti~~laa 1096 (1102)
+.++++.+|.++|.|||.++.|+..|++. |+.++ ..++...+|+++|++
T Consensus 30 ~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~ 82 (92)
T 1fh1_A 30 GEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVE 82 (92)
T ss_dssp ----------------CTTTTHHHHHHHC-----------------CTTTSTH
T ss_pred hhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHH
Confidence 37899999999999999999999999865 99999 678999999999875
|
| >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.0035 Score=56.06 Aligned_cols=68 Identities=10% Similarity=-0.080 Sum_probs=52.3
Q ss_pred HHHHHhhhcCCCcchhhhhhhcCCCCccc------cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGEIKQSDPSRHFY------GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff------~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+...+.+..+.+..++....+..+.+|+ ++|.|||.++.|+..|++. |+.++..++...+|+++|++
T Consensus 17 ~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~ 91 (107)
T 3ce7_A 17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIAD 91 (107)
T ss_dssp HHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHH
Confidence 33344444444445555436799999996 8899999999999999875 99999999889999988764
|
| >2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.0049 Score=54.81 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=42.7
Q ss_pred hhcCCCCccc-cccC-chhhHHHHHHhhhCC-CCccceEEEE--eccccccccC
Q psy12852 1048 KQSDPSRHFY-GYAD-KKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff-~lGg-dSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa 1096 (1102)
..+.++.+|+ ++|. |||.++.|+..|+++ |+.++..++. ...|+++|++
T Consensus 44 ~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~ 97 (105)
T 2lki_A 44 HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLAL 97 (105)
T ss_dssp GTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHH
T ss_pred ccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHH
Confidence 5789999999 5999 999999999999875 9999999865 5788888764
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.0067 Score=66.77 Aligned_cols=46 Identities=2% Similarity=-0.159 Sum_probs=38.4
Q ss_pred HHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1032 YEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.|+.|..+|+++||. ++ +||||+| +|+++++|+. |++||+++||+.
T Consensus 29 ~E~~la~iw~~vL~~-~~---~d~Ff~l-------~~l~~~~~~~---------f~~pt~~~la~~ 74 (319)
T 2hfk_A 29 GAGMFRALFRQAVED-DR---YGEFLDV-------LAEASAFRPQ---------FASPEACSERLD 74 (319)
T ss_dssp -CCHHHHHHHHHHHT-TC---HHHHHHH-------HHHHHTTSCE---------ECSGGGCCSCCC
T ss_pred hHHHHHHHHHHHHcC-Cc---hHHHHHH-------HHHHHHHHHh---------cCCcchhhcccc
Confidence 566777788888888 44 9999999 9999999875 999999999864
|
| >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.0074 Score=54.25 Aligned_cols=47 Identities=0% Similarity=-0.169 Sum_probs=42.2
Q ss_pred cCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1050 SDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1050 i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
|..+.+| -++|.|||..+.|+..|+++ |+.++..++....|+++|++
T Consensus 45 I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~ 93 (113)
T 2cgq_A 45 ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYT 93 (113)
T ss_dssp CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHH
T ss_pred CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHH
Confidence 8899999 58999999999999999875 99999999989999988763
|
| >4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... | Back alignment and structure |
|---|
Probab=91.93 E-value=1.3 Score=41.66 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecCC--CCCCHHHHHHHHHH
Q psy12852 266 KSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLE--GVWSQAAYDFLDDF 343 (1102)
Q Consensus 266 d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~--~~Ws~ea~~~f~~l 343 (1102)
+-.++.++|..+.+.+.+.|.. | | +-++.+|+||..+. ..|..+|.++++++
T Consensus 6 ~~~~~~~~V~~V~DGDTi~v~~-~-g------------------------~~~~VRL~gIDaPE~~q~~g~~A~~~l~~l 59 (143)
T 4eqp_A 6 KLHKEPATLIKAIDGDTVKLMY-K-G------------------------QPMTFRLLLVDTPEFNEKYGPEASAFTKKM 59 (143)
T ss_dssp -CCEEEEEEEEECSSSEEEEEE-T-T------------------------EEEEEEETTEECCCTTSTTHHHHHHHHHHH
T ss_pred CCceeeEEEEEEECCCEEEEEe-C-C------------------------cEEEEEEEeecCCCcCCchHHHHHHHHHHH
Confidence 3468899999999888886653 1 1 12346677776442 37899999999988
Q ss_pred Hhhh-ceEEEEEEEe--eecCceeEEEEEEcCCCcccHHHHHHHcCcceee
Q psy12852 344 TRLF-ARVVSVKLHG--EETGGRRYAVELFDLDEELNINKELVALDLAKFS 391 (1102)
Q Consensus 344 ~~~~-~~~~~v~~~~--~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~ 391 (1102)
+. .+.+.+.... ..+....+...++. ++.+||..|++.|+|...
T Consensus 60 --l~~g~~V~~~~d~~~~~D~ygR~la~v~~--~g~~vn~~lv~~GlA~v~ 106 (143)
T 4eqp_A 60 --VENAKKDEVEFDKGQRTDKYGRGLAYIYA--DGKMVNEALVRQGLAKVA 106 (143)
T ss_dssp --HHHCSCEEEECCSSCSBCTTSCEEEEEEE--TTEEHHHHHHHTTSSEEC
T ss_pred --HhcCCeEEEEEccccccCCCCCEEEEEEE--CCchHHHHHHHCCCeEEE
Confidence 44 2556665521 12222224444443 357999999999999853
|
| >2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.043 Score=47.43 Aligned_cols=64 Identities=6% Similarity=0.012 Sum_probs=46.3
Q ss_pred HhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceE-EEEeccccccccC
Q psy12852 1033 EKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLS-VIIRNFSLDVMAP 1096 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~-~l~~~pti~~laa 1096 (1102)
.+.+..+..+.++. .+.|.++.+|+ +||.|||.++.|+..++++ |+.++.. +-|++.|+.+++.
T Consensus 16 ~~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~~e~~~~~TV~d~vd 83 (102)
T 2l9f_A 16 LELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAMPTNFATATVREMAE 83 (102)
T ss_dssp HHHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSSCSCCTTCBHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCccHHHHHHccHHHHHH
Confidence 34444455556665 46799999976 6999999999999999875 9886543 3356677776653
|
| >3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.42 E-value=3.1 Score=49.17 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=64.3
Q ss_pred CcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceec------------CCCCCCH
Q psy12852 267 SGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEP------------LEGVWSQ 334 (1102)
Q Consensus 267 ~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p------------~~~~Ws~ 334 (1102)
+..+.|+|..+.+.+.+.|..-+-|.. ++++|+||.- ....|..
T Consensus 206 ~~~~~~~V~~V~DGDT~~v~~~~~~~~------------------------~~vRL~GIdaPe~~~~~~~~~~~~~~~g~ 261 (570)
T 3bdl_A 206 AGRSEAVVEYVFSGSRLKLYLPKETCL------------------------ITFLLAGIECPRGARNLPGLVQEGEPFSE 261 (570)
T ss_dssp TCEEEEEEEEESSSSEEEEEETTTTEE------------------------EEEEESSEECCCCCEEETTEEECCCTTHH
T ss_pred CCeeeEEEEEEeCCCEEEEEEcCCCcE------------------------EEEEEEEEECCCCCCCCCCCccccChHHH
Confidence 345778888888887776544222322 2344444431 2347999
Q ss_pred HHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHcCcceee
Q psy12852 335 AAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFS 391 (1102)
Q Consensus 335 ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~ 391 (1102)
+|..+++++ +..+.+.+.+.+....+. +...++.. +.+||..|++.|+|...
T Consensus 262 eA~~~l~~~--l~~r~V~~~~~~~D~ygR-~la~v~~~--~~~v~~~Lv~~GlA~~~ 313 (570)
T 3bdl_A 262 EATLFTKEL--VLQREVEVEVESMDKAGN-FIGWLHID--GANLSVLLVEHALSKVH 313 (570)
T ss_dssp HHHHHHHHH--HTTCEEEEEEEEECTTSC-EEEEEEET--TEEHHHHHHHTTSSEEC
T ss_pred HHHHHHHHH--hcCCeEEEEEEeEcCCCC-EEEEEEEC--CEEHHHHHHHcCCcEEE
Confidence 999999998 566778887776544343 44444442 57899999999999886
|
| >2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=86.81 E-value=0.78 Score=35.63 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=38.0
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCccc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVP 303 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~ 303 (1102)
.++.|+.|++.| .|+.+|-|+|.+++.. +.+.|.|-| |....+..++|.+
T Consensus 13 ~f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D-~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 13 KFEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFED-SSKSWVLWKDIQT 63 (66)
T ss_dssp CSCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEEC
T ss_pred cccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEcc-CCEEEEEeecccc
Confidence 458999999999 5788999999999864 667788766 3334466666654
|
| >3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* | Back alignment and structure |
|---|
Probab=84.38 E-value=1.1 Score=40.59 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=40.3
Q ss_pred cccCCCceeEEEeCCCC----cEEEeEeeecCCCccEEEEEEecCC--eeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKS----GYNRVQVTDTSDSELAMILFVDYSD--KQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~----~wyRa~I~~~~~~~~~~V~fvDyGn--~~~v~~~~lr~l 304 (1102)
..+..|+-+-+....+. .|+.|+|+.+.++ .+.|.|.+|+. .|.|+..+||++
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~-f~~V~y~~~~~~~~EiV~~~rlR~~ 117 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKGD-FYVIEYAACDATYNEIVTLERLRPV 117 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEETT-EEEEEETTC----CEEECGGGEEEC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeCC-EEEEEEcCCCCCcceEEehhheEeC
Confidence 34578998888655444 6999999998654 77899999998 788999999999
|
| >2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A | Back alignment and structure |
|---|
Probab=82.96 E-value=1.9 Score=37.84 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=47.8
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcc---cCCccccccCCCcceEEEEee
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLV---PIHRPQLISNLPFQAIECYLA 323 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr---~l~~~~~l~~lP~qA~~c~L~ 323 (1102)
..|.-|+|++++++.||-++|++...++.+.|.|=| |....|..+++- +| | .-+++.|...
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~~~~ky~V~FdD-g~~~~v~~k~iiv~d~i--p------~g~~V~A~te 69 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDD-GYECDVLGKDILLCDPI--P------LDTEVTALSE 69 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEETTEEEEEETT-SCEEEEEGGGEECCSSC--C------TTCEEEEECT
T ss_pred ccceEEEEEeccCCcCcccEEEEeccCCeEEEEEcC-CCeeEeecceEEEeccc--C------CCcEEEEeec
Confidence 468889999998889999999987777789888855 777778777777 66 4 2467777643
|
| >1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 | Back alignment and structure |
|---|
Probab=81.08 E-value=1.4 Score=40.39 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcc
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLV 302 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr 302 (1102)
..|.-|+|++++++.||.++|.....++.+.|.|=| |+...|...++.
T Consensus 10 ~iG~rVfArWsd~~yyYpG~V~~~~~~~~Y~V~FdD-G~~k~v~~~div 57 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDD-GYECDVLGKDIL 57 (156)
T ss_dssp STTCEEEECSSCSSEEEEEEEEECCTTTEEEEECTT-SCEEEEETTTEE
T ss_pred hhccEEEEEcCCCCcccccEEEEeccCCEEEEEEcC-CCeeEeeccceE
Confidence 689999999999999999999998888888887755 888888876655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1102 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-59 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-10 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-54 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 6e-14 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 4e-51 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 9e-13 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-50 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-09 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 4e-47 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-17 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 5e-42 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-16 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-40 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-14 | |
| d2diqa1 | 97 | b.34.9.1 (A:8-104) Tudor and KH domain-containing | 6e-14 | |
| d2hqxa1 | 90 | b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( | 1e-11 | |
| d2d9ta1 | 60 | b.34.9.1 (A:8-67) Tudor domain-containing protein | 7e-06 | |
| d1mhna_ | 59 | b.34.9.1 (A:) Survival motor neuron protein 1, smn | 9e-05 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 214 bits (545), Expect = 2e-59
Identities = 90/528 (17%), Positives = 177/528 (33%), Gaps = 55/528 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ + A L D G KKGDV+A+ PE L A++G + ++I +
Sbjct: 107 RELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEA 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIR--------------ESIPDVKLFLLDETKPDLP 614
+ I S+ +I + +I S+ V + + D
Sbjct: 167 VAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ 226
Query: 615 NLSDLMKTTPASEVKPS---EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG-GQVGK 670
DL + P E + D L +YTSG+TG PK + L+ K
Sbjct: 227 EGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 286
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI----RTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 287 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 346
Query: 727 CNAGIYIGEMCRYLLASKESEAD-YSHQVVKMIGVG---MRGDIWAKFVKRFHVQ--TII 780
N R L+A + + ++++G + + W + K+ + ++
Sbjct: 347 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 406
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIR 839
+ + TE ++ + P F A++ + P G L I
Sbjct: 407 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG---HPQEGATEGNLVIT 463
Query: 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
+ PG +G ++ E + F + SGD DE GY
Sbjct: 464 --DSWPGQART----------LFGDHERFE------QTYFSTFKNMYFSGDGARRDEDGY 505
Query: 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV---- 955
+ R D G + T E+E+ + + E V G+ + G+A +
Sbjct: 506 YWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIP-HAIKGQAIYAYVTLNHG 564
Query: 956 DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ + + + + A P + ++ T + KI + L+
Sbjct: 565 EEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 612
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 62.7 bits (152), Expect = 2e-10
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 132 KSVKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRP 185
+ ++ + + Q + + +++ + A L D G KKGDV+A+ P
Sbjct: 80 RHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 139
Query: 186 EYVGVWLGAAKLGVI 200
E L A++G +
Sbjct: 140 EAAVAMLACARIGAV 154
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 196 bits (499), Expect = 2e-54
Identities = 90/504 (17%), Positives = 183/504 (36%), Gaps = 28/504 (5%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + + ++ L+ G GD +A + N ++ + +G + N L +
Sbjct: 44 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE 103
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++ + K ++ P +EAIR + V+ F++ + K L+ +
Sbjct: 104 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA-- 161
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL--LSLGSGDVIYNCLP 686
+ + YT+GTTGLPK + + ++L + +L DV+ +P
Sbjct: 162 -DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746
M+H + L+ + + ++ + + L ES
Sbjct: 221 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLES 280
Query: 747 EADYSHQVVKMI-GVGMRGDIWAKFVKRFHVQTIIEFYGATEGN----ANLVNMDNTEGA 801
+ +++ G +R V+ + + YG TE + N V +
Sbjct: 281 TGHRLKTLRRLVVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLS 339
Query: 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHF 861
TL P+ +++ + D + + G +GE++ P
Sbjct: 340 EEEKLTLKAKTGLPIPLVRLRVA------DEEGRPVPK-----DGKALGEVQLKGPW-IT 387
Query: 862 YGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTME 921
GY +E+ + P D +F +GD+ V DE GY+ KDR D + GE +S+++
Sbjct: 388 GGYYGNEEATRS----ALTP-DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD 442
Query: 922 VEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPL 981
+E + + E V + R + + +L L A + P
Sbjct: 443 LENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPD 502
Query: 982 FVRIMKAIEMTGTFKIKKIQLQNE 1005
+ I T K K L+ +
Sbjct: 503 AYVFAEEIPRTSAGKFLKRALREQ 526
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 73.4 bits (179), Expect = 6e-14
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKG 174
M L +++ T ++ + + ++ L+ G G
Sbjct: 6 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVG 65
Query: 175 DVLALMCENRPEYVGVWLGAAKLGVI 200
D +A + N ++ + +G +
Sbjct: 66 DRVATLGFNHFRHLEAYFAVPGMGAV 91
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 187 bits (475), Expect = 4e-51
Identities = 91/509 (17%), Positives = 198/509 (38%), Gaps = 42/509 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 51 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 110
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNL--------SDLM 620
L++S++ + + VS +I +++ +P ++ ++ ++K D S L
Sbjct: 111 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 170
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL---SLGS 677
+ P + L + +SG+TGLPK +P+ + + + +
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 230
Query: 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMC 737
I + +P H G+ T+ LI G + + +F + R YK + + + +
Sbjct: 231 DTAILSVVPF-HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 289
Query: 738 RYLLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
+ S + + ++ G + ++ KRFH+ I + YG TE + ++
Sbjct: 290 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 349
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQ 854
+ G + ++P F ++ DL + + + G LC+R P +
Sbjct: 350 PEGDDKPGAVGKVVPFF--EAKVV--DLDTGKTLGVNQRGELCVR----GPMI------- 394
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
GY + E+ D + SGD+ DE + + DR ++KG
Sbjct: 395 ------MSGYVNNPEATNA-----LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 443
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANL 974
V+ E+E+ + ++ + V G+ D + +++ + K +V + + +
Sbjct: 444 YQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 503
Query: 975 PAYAR-PLFVRIMKAIEMTGTFKIKKIQL 1002
+ V + + T K+ ++
Sbjct: 504 TTAKKLRGGVVFVDEVPKGLTGKLDARKI 532
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 69.9 bits (170), Expect = 9e-13
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 123 NTTLVSEFKKSVKRRPNAPCY-----YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL 177
+ T + K++KR P + T + E S ++A ++ G +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 178 ALMCENRPEYVGVWLGAAKLGVI 200
+ EN ++ LGA +GV
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVA 98
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 187 bits (476), Expect = 2e-50
Identities = 92/534 (17%), Positives = 182/534 (34%), Gaps = 57/534 (10%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
++ E ++A++L G +KGD +A+ PE + L +++G I +++
Sbjct: 94 KELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSN 153
Query: 568 PLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDVKLFLLDETKPDLPNLSD 618
L I+ SK +I + ++ P V+ L+ +
Sbjct: 154 SLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFH 213
Query: 619 L-------MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGK 670
+ P P+ + D L +YTSG+TG PK LLG +
Sbjct: 214 APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMR 273
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKF----SASNYFRDCAKYK 726
+ DV + + G L+ G + + + S Y+ ++K
Sbjct: 274 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHK 333
Query: 727 CNAGIYIGEMCRYLLASKESEAD-YSHQVVKMIGVG---MRGDIWAKFVKRF--HVQTII 780
R L + +S + +S + ++ +G + ++W + ++ + I+
Sbjct: 334 VTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV 393
Query: 781 EFYGATE-GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839
+ Y TE G+ + + + P F ++ D + + +
Sbjct: 394 DTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL--DPNTGEELNTSHAEGVLA 451
Query: 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
K P + + L+ P Y+ +GD D+ GY
Sbjct: 452 VKAAWPSF-------------ARTIWKNHD---RYLDTYLNPYPGYYFTGDGAAKDKDGY 495
Query: 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD----------LDGRA 949
++ R D G +ST E+EA I + E V G L ++
Sbjct: 496 IWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 555
Query: 950 GMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
D Q K LV + ++ +A P + ++ + T + KI + L+
Sbjct: 556 SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 609
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (143), Expect = 2e-09
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 134 VKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPE 186
+ PN F Q + T K++ E ++A++L G +KGD +A+ PE
Sbjct: 69 ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE 128
Query: 187 YVGVWLGAAKLGVI 200
+ L +++G I
Sbjct: 129 AIITLLAISRIGAI 142
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 175 bits (443), Expect = 4e-47
Identities = 90/517 (17%), Positives = 178/517 (34%), Gaps = 43/517 (8%)
Query: 490 ASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
+ A +N + +++ +N++ARI + G K ++ +M E +
Sbjct: 30 EEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
L K G I+ K+ + + + +++ ++ I I+
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---------- 139
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666
+ + P +++D IYTSGTTG PK ++ + +
Sbjct: 140 ----NGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLK 195
Query: 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
++ L++ D I + A + AL+ G+S+ I K + +++ +
Sbjct: 196 VFFENSLNVTEKDRIGQFASISFDA-SVWEMFMALLTGASLYIILKDTINDFVKFEQYIN 254
Query: 727 CNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786
I Y++ ++ G + K+ ++ T
Sbjct: 255 QKEITVITLPPTYVVHLDPERILSIQTLI-TAGSATSPSLVNKWKEKVTYINAYGPTETT 313
Query: 787 EGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQP 845
V T G I + I Q + G LCI
Sbjct: 314 ICATTWVATKETIGHSVPIGAPIQNT-----QIYIVDENLQLKSVGEAGELCIG----GE 364
Query: 846 GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905
G+ G Y + + + +K ++N F PG+K + +GD G + + R
Sbjct: 365 GLARG-----------Y-WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGR 412
Query: 906 TGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKL 965
+ + +G V EVE+ + K++ +E V K D + + A + + L+
Sbjct: 413 IDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK--DHQEQPYLCAYFVSEKHIPLEQ 470
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L Q LP Y P + + + +T KI + QL
Sbjct: 471 LRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 507
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 84.6 bits (208), Expect = 2e-17
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCE 182
+ T+ F++ V +RPN ++E T +++ +N++ARI + G K ++ +M E
Sbjct: 22 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 81
Query: 183 NRPEYVGVWLGAAKLGVI 200
+ L K G
Sbjct: 82 KSIDLFIGILAVLKAGGA 99
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 160 bits (404), Expect = 5e-42
Identities = 88/520 (16%), Positives = 167/520 (32%), Gaps = 35/520 (6%)
Query: 492 NARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
A D A T N ++D ++++A Q G ++ D + + N E+ V
Sbjct: 34 RAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE 608
+LG + + + + + ++ A I+ Y KL L
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKN 153
Query: 609 TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV 668
L +E +++SD + G+TGL K + + +
Sbjct: 154 IIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR 213
Query: 669 GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALIL-GSSIAIRTKFSASNYFRDCAKYKC 727
+ L V LPM H+ + ++ G + + S + F + K
Sbjct: 214 SVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKV 273
Query: 728 NAGIYIGEMCRYLLASKESEADY--SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785
+ + + + S D S QV+++ G + + F F A
Sbjct: 274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMA 333
Query: 786 TEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQ 844
D E V + P + ++ ++ +TG L R
Sbjct: 334 EGLVNYTRLDDPEEIIVNTQGKPMS----PYDESRVWDDHDRDVKPGETGHLLTR----G 385
Query: 845 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKD 904
P I G K + + + D ++ +GD++ + GY+ +
Sbjct: 386 PYTIRGYYKAEEHNAASF------------------TEDGFYRTGDIVRLTRDGYIVVEG 427
Query: 905 RTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLK 964
R D GE V+ EVE + + + + + G + I+
Sbjct: 428 RAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP-DQFLGERSCVFIIPRDEAPKAA 486
Query: 965 LLVQGL-DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
L L + L AY P V +++ TG K+ K L+
Sbjct: 487 ELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 81.2 bits (199), Expect = 2e-16
Identities = 12/79 (15%), Positives = 31/79 (39%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
T + + + + W+ +++D ++++A Q G ++ D + +
Sbjct: 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ V +LG +
Sbjct: 83 PNIKEFFEVIFALFRLGAL 101
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 155 bits (391), Expect = 2e-40
Identities = 96/525 (18%), Positives = 175/525 (33%), Gaps = 45/525 (8%)
Query: 492 NARSTNDAAATTVKNLE-----AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
A D A V A++ +A L DG + +A++ N + V
Sbjct: 11 AATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIA 70
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
L +LG + AL+N LK L I + A ++ A+ +AI +S ++ L
Sbjct: 71 ILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFL 129
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL--L 664
+ D S + + YTSGTTGLPKAAI+P +
Sbjct: 130 GDLVRDGEPYS-------YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRV 182
Query: 665 GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAK 724
+ L G +V+ +P+YH G + AL L + + +F + + +
Sbjct: 183 LFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQ 242
Query: 725 YKCNAGIYIGEMCRYLLASKESEA-DYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIE 781
+ + L A+ ++ + D + V + +
Sbjct: 243 EQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN 302
Query: 782 FYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841
YG TE +L G F V I++ ++ + + + G I
Sbjct: 303 IYGTTEAMNSLYMRQPKTGTEMAPG-----FFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901
+ F GY ++ ++ + + G ++ + D+ V G +
Sbjct: 358 SDS---------------AFVGYLNQPQATAE----KLQDG--WYRTSDVAVWTPEGTVR 396
Query: 902 FKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV 961
R D GEN+ E+E + TE V G+ + +
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL 456
Query: 962 DLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L ++ L + RP I+ + K+ + QL +
Sbjct: 457 SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 74.7 bits (182), Expect = 2e-14
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 125 TLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCE 182
T+ +++ R P+ + T ++ +A L DG + +A++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 183 NRPEYVGVWLGAAKLGVI 200
N + V L +LG +
Sbjct: 63 NSADVVIAILALHRLGAV 80
|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor and KH domain-containing protein TDRKH species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (162), Expect = 6e-14
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+L KL E+ + G + A + R +V T ++ + F
Sbjct: 3 LQLDKLVNEMTQHYENSVPEDLTVH--VGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 60
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGV 325
VD+ D + P +DL + +LPFQAIEC LA +
Sbjct: 61 VDFGDNGDCPLKDLRAL--RSDFLSLPFQAIECSLARI 96
|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: P100 co-activator, SND1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (144), Expect = 1e-11
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 226 ELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMI 285
+ +LM+ + D++ G C+A+ D + R +V +
Sbjct: 2 QFQKLME---NMRNDIASHPPVEGSYAPRRGEFCIAKFVDGE-WYRARVEKVESPAKIHV 57
Query: 286 LFVDYSDKQEIPYEDLVPIHRPQLISNLPFQA 317
++DY +++ +P L + LP QA
Sbjct: 58 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQA 89
|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor domain-containing protein 3, TDRD3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.5 bits (100), Expect = 7e-06
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 255 PGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPIH 305
PG C A + + + R +V S A++ F DY + +E+ ++ P+
Sbjct: 5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQ 56
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (91), Expect = 9e-05
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 255 PGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPI 304
G C A + + E ++++ Y +++E DL+
Sbjct: 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1102 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 99.71 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 99.64 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 99.6 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 99.57 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 99.53 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.51 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 99.51 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 99.51 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 99.41 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 99.39 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 99.38 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 99.29 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 98.68 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 98.45 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 98.39 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 98.37 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 98.27 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 98.24 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 98.2 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 98.0 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 97.65 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 96.65 | |
| d1snoa_ | 136 | Staphylococcal nuclease {Staphylococcus aureus [Ta | 88.25 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=9e-67 Score=639.34 Aligned_cols=487 Identities=17% Similarity=0.205 Sum_probs=383.6
Q ss_pred hcccCCcccchhhcc---------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCC
Q psy12852 492 NARSTNDAAATTVKN---------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~---------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~ 562 (1102)
+++.+||++|+++.. +|+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++
T Consensus 81 h~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 81 HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 160 (643)
T ss_dssp GHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCC
Confidence 577899999998531 39999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhccCceEEEEcCcch---------hHHHHHHhc--CCC-ceEEEecCCCCCC-------CChhHhhccC
Q psy12852 563 NLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRES--IPD-VKLFLLDETKPDL-------PNLSDLMKTT 623 (1102)
Q Consensus 563 ~~p~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~--~~~-~~~~~~~~~~~~~-------~~~~~~~~~~ 623 (1102)
.++.+++.+++++++++++|+++... ......... .+. ..++++....... ..........
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKA 240 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTS
T ss_pred CCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhhhhhccc
Confidence 99999999999999999999976532 222222221 222 3444444322111 1111222221
Q ss_pred CCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHh-hhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG-GQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 624 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
. ........+++|+++|+|||||||+||||+++|++++.. .......++++++|++++.+|++|..+..+.++.+|+
T Consensus 241 ~--~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~ 318 (643)
T d1pg4a_ 241 S--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLA 318 (643)
T ss_dssp C--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHH
T ss_pred C--cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 1 122224568899999999999999999999999997654 4555667899999999999999999997778899999
Q ss_pred cCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHh
Q psy12852 703 LGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 703 ~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~ 774 (1102)
.|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ....++|.++++|+++++++++.+.+.+
T Consensus 319 ~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~ 398 (643)
T d1pg4a_ 319 CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKI 398 (643)
T ss_dssp TTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred hCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHh
Confidence 9999999764 5899999999999999999999999999876532 2245688889999999999999999998
Q ss_pred C--cchhhhccccccCCcccccCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcc
Q psy12852 775 H--VQTIIEFYGATEGNANLVNMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847 (1102)
Q Consensus 775 ~--~~~l~n~YG~TE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Ge 847 (1102)
+ .+.++|.||+||++..++... ...+++|.+. ..+.+.++|++ |. +++.|+.||
T Consensus 399 g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~-------~g~~v~ivd~~-g~-----------~~~~g~~Ge 459 (643)
T d1pg4a_ 399 GKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPF-------FGVQPALVDNE-GH-----------PQEGATEGN 459 (643)
T ss_dssp TTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBC-------TTCCEEEECTT-CC-----------BCCSSEEEE
T ss_pred CCCCceEEEeechhhccceEEecCCCccCCCCCcccccc-------CCCEEEEECCC-CC-----------CCCCCceEE
Confidence 6 357999999999987665332 2334455443 34455567765 43 346677777
Q ss_pred eEEEEeecCCc-ccccccCCchH-HHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHH
Q psy12852 848 IIGEIKQSDPS-RHFYGYADKKE-SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925 (1102)
Q Consensus 848 l~gei~~~G~~-~~~~gY~~~~~-t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~ 925 (1102)
++ ++|+. .++.||+++++ +.+.++ ...++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++
T Consensus 460 l~----v~~~~p~~~~~~~~~~~~~~~~~~----~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~ 531 (643)
T d1pg4a_ 460 LV----ITDSWPGQARTLFGDHERFEQTYF----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 531 (643)
T ss_dssp EE----ECSCCTTCCCEETTCHHHHHHHHH----SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHH
T ss_pred EE----EecCCCcccccccCChhhchhhhc----ccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHH
Confidence 65 45641 46789999863 444443 2357899999999999999999999999999999999999999999
Q ss_pred HHhcCCcceeEEEEEEcCCCCCceeEEEEEc-CCCccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhh
Q psy12852 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD-TSNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001 (1102)
Q Consensus 926 l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~-~~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~ 1001 (1102)
|.+||+|.+|+|++++++. .|+..+++++. ++...+ ..+|+++|+++||+||+|+.|+++++||+|+||||+|++
T Consensus 532 l~~~p~V~eaaVvg~~d~~-~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~ 610 (643)
T d1pg4a_ 532 LVAHPKIAEAAVVGIPHAI-KGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 610 (643)
T ss_dssp HHHSTTEEEEEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHH
T ss_pred HHhCCCcceEEEEEEECCC-CCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHH
Confidence 9999999999999987765 34444444432 223333 357999999999999999999999999999999999999
Q ss_pred hhhcCCC
Q psy12852 1002 LQNEGFD 1008 (1102)
Q Consensus 1002 L~~~~~~ 1008 (1102)
|+++...
T Consensus 611 Lr~~~~~ 617 (643)
T d1pg4a_ 611 LRKIAAG 617 (643)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998644
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-65 Score=630.76 Aligned_cols=492 Identities=20% Similarity=0.250 Sum_probs=382.4
Q ss_pred hcccCCcccchhhcc---------hHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 492 NARSTNDAAATTVKN---------LEAQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~---------~Y~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
+|+++||++|+++.. ||+||.++++++|++|+ +.|+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 68 ~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~ 147 (640)
T d1ry2a_ 68 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF 147 (640)
T ss_dssp HHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCC
Confidence 588899999998532 39999999999999997 57999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhccCceEEEEcCcch---------hHHHHHHhcCCCceE-EEecCCCCC------CCChhHhhccCCC
Q psy12852 562 TNLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDVKL-FLLDETKPD------LPNLSDLMKTTPA 625 (1102)
Q Consensus 562 ~~~p~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~ 625 (1102)
+.++.+++.++++++++++++++.... ..+............ ......... .............
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (640)
T d1ry2a_ 148 AGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKY 227 (640)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTS
T ss_pred CCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccccccccccccc
Confidence 999999999999999999999976532 223333333333222 222111100 0011111111222
Q ss_pred CCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh-hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 626 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
.......+..++|+++|+|||||||.||||+++|++++... ......++++++|++++.+|++|..+..+.++.+|+.|
T Consensus 228 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G 307 (640)
T d1ry2a_ 228 KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYG 307 (640)
T ss_dssp CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHT
T ss_pred ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhC
Confidence 22233356678899999999999999999999999987754 44445678999999999999999999788999999999
Q ss_pred ceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCc
Q psy12852 705 SSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHV 776 (1102)
Q Consensus 705 ~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~ 776 (1102)
+++++.+. .++..+++.|+++++|++.++|++++.|...... ....+++.+.+||++++++++++|.+.++.
T Consensus 308 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~ 387 (640)
T d1ry2a_ 308 CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGK 387 (640)
T ss_dssp SEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSC
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCC
Confidence 99999875 4889999999999999999999999999875432 234577888899999999999999999874
Q ss_pred --chhhhccccccCCcccccCC------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcce
Q psy12852 777 --QTIIEFYGATEGNANLVNMD------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMI 848 (1102)
Q Consensus 777 --~~l~n~YG~TE~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel 848 (1102)
..+++.||+||++..+.... ...+++|.+. ..+.+.++|++++..+ .+.+..||+
T Consensus 388 ~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~-------~g~~~~i~d~~~~~~~----------~~~~~~Gel 450 (640)
T d1ry2a_ 388 NEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF-------FGIDAVVLDPNTGEEL----------NTSHAEGVL 450 (640)
T ss_dssp SSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEEC-------TTCCEEEECSSSTTCE----------ECSSCEEEE
T ss_pred CcceEEeeecccccccccccccCCCcCCCCCccccccc-------CCceEEEEeCCCCccc----------CCCCceEEE
Confidence 36899999999987664322 2334455443 3456677887765443 233445665
Q ss_pred EEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHH
Q psy12852 849 IGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATIS 927 (1102)
Q Consensus 849 ~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~ 927 (1102)
+ +.+.+| .++.||++++ .+.+.|+. +.+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.
T Consensus 451 ~--i~~~~p-~~~~gy~~~~e~t~~~~~~----~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~ 523 (640)
T d1ry2a_ 451 A--VKAAWP-SFARTIWKNHDRYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII 523 (640)
T ss_dssp E--ESSCCT-TSCCEETTCHHHHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH
T ss_pred E--EEecCC-CcccccccCHHHHHhhhcc----CCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHH
Confidence 5 334446 4788999886 55666653 35789999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEEEcCCCCCceeEEEEEcCCC-cc----------CHHHHHHHHHccCCCCCcceEEEEecCccCCCCcc
Q psy12852 928 KYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN-QV----------DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996 (1102)
Q Consensus 928 ~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~-~~----------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GK 996 (1102)
+||+|.+|+|++++++. .++..+++++..+. .. -.++|+++++++||+||+|+.|+++++||+|+|||
T Consensus 524 ~~p~V~~a~Vvg~~d~~-~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGK 602 (640)
T d1ry2a_ 524 EDPIVAECAVVGFNDDL-TGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGK 602 (640)
T ss_dssp SSTTEEEEEEECCCCCT-TSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSC
T ss_pred hCCCccEEEEEEEECCC-CCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcC
Confidence 99999999999976554 34444444442221 11 13568899999999999999999999999999999
Q ss_pred chhhhhhhcCCC
Q psy12852 997 IKKIQLQNEGFD 1008 (1102)
Q Consensus 997 idr~~L~~~~~~ 1008 (1102)
|+|++|+++...
T Consensus 603 i~R~~Lr~~~~~ 614 (640)
T d1ry2a_ 603 IMRRILRKILAG 614 (640)
T ss_dssp BCHHHHHHSCC-
T ss_pred ccHHHHHHHHhC
Confidence 999999998754
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=3.9e-65 Score=613.64 Aligned_cols=499 Identities=19% Similarity=0.203 Sum_probs=406.6
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q psy12852 463 MTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCEN 539 (1102)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~ 539 (1102)
.++.+-.+|.+..++|.+.++..++++ +|+++||++|+++++. |+||.++++++|+.|++.|+++|++|+|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~tl~~l~~~--~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n 82 (514)
T d1amua_ 5 EEQYLFAVNNTKAEYPRDKTIHQLFEE--QVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK 82 (514)
T ss_dssp HHHHHHHTTCCCCCCCTTCCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred HHHHHHHhcCCCCCCCCCCcHHHHHHH--HHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCC
Confidence 345566789999999998888888877 7999999999998875 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHh
Q psy12852 540 RPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDL 619 (1102)
Q Consensus 540 ~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1102)
++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+... .........+...
T Consensus 83 ~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~---~~~~~~~~~~~~~--------- 150 (514)
T d1amua_ 83 SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI---QFNGQVEIFEEDT--------- 150 (514)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS---CCCSEEEECCCST---------
T ss_pred CHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh---ccccccccccccc---------
Confidence 9999999999999999999999999999999999999999999998766544332 2222222221110
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHh
Q psy12852 620 MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIP 699 (1102)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~ 699 (1102)
...........+..++++++|+|||||||.||||++||+++..........++...++++++..|++|..+ +..++.
T Consensus 151 --~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~ 227 (514)
T d1amua_ 151 --IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDAS-VWEMFM 227 (514)
T ss_dssp --TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHH-HHHHHH
T ss_pred --ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccc-cccccc
Confidence 01111111224567889999999999999999999999999999999999999999999999999999988 888899
Q ss_pred HhhcCceEEEeCC---CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCc
Q psy12852 700 ALILGSSIAIRTK---FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHV 776 (1102)
Q Consensus 700 ~l~~G~~lv~~~~---~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~ 776 (1102)
++..|+++++... .+.....+.+..+.++.+..+|...... ......+++.++++|+++++++.+++.+.
T Consensus 228 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~~~~~~--- 300 (514)
T d1amua_ 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL----DPERILSIQTLITAGSATSPSLVNKWKEK--- 300 (514)
T ss_dssp HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS----CTTTCCSCSEEEEESSCCCHHHHHHHTTT---
T ss_pred cccccccccccccccccchhhhhhhhhhhhcccccceeeecccc----cccccccccEEEEecccCCHHHhhhhccc---
Confidence 9999999998765 5678888999999999999999876543 33445678888999999999999887664
Q ss_pred chhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecC
Q psy12852 777 QTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856 (1102)
Q Consensus 777 ~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G 856 (1102)
..+++.||+||++.+++.........+...+.+... ....+...|++ + ++++.|+.|||+ ++|
T Consensus 301 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~d~~-~-----------~~~~~g~~GEl~----v~~ 363 (514)
T d1amua_ 301 VTYINAYGPTETTICATTWVATKETIGHSVPIGAPI-QNTQIYIVDEN-L-----------QLKSVGEAGELC----IGG 363 (514)
T ss_dssp SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEEC-TTEEEEEECTT-S-----------CBCCTTCEEEEE----EEE
T ss_pred eeEEEeeccccCceeeeeccccccccCcccccccce-eeeeEeeeccc-c-----------eecCCCCeeEEE----Ecc
Confidence 378999999999988765443333333322222222 34444445443 3 345778877755 568
Q ss_pred CcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCccee
Q psy12852 857 PSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEF 935 (1102)
Q Consensus 857 ~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a 935 (1102)
| .++.||++++ .+.+.|..+++.++++||+|||+|++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|.+|
T Consensus 364 ~-~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~ 442 (514)
T d1amua_ 364 E-GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISET 442 (514)
T ss_dssp T-TCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEE
T ss_pred C-cccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEE
Confidence 8 4889999886 7788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 936 TVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
+|++++++. ....+++++..+...+.++|+++++++||+|++|..|+++++||+|++|||+|++|++.
T Consensus 443 ~V~~~~~~~--~g~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~ 510 (514)
T d1amua_ 443 AVSVHKDHQ--EQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEP 510 (514)
T ss_dssp EEEEEECTT--SCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred EEEEEECCC--CCEEEEEEEEcCCCCCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCCC
Confidence 999976543 34556666666667889999999999999999999999999999999999999999974
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.7e-63 Score=603.39 Aligned_cols=496 Identities=19% Similarity=0.258 Sum_probs=387.3
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+..+.|.+.+++....|+.+|+.+.. +|+||.+++.++|++|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 18 t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~ 97 (541)
T d1lcia_ 18 TAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGV 97 (541)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCe
Confidence 44455555533434558889987643 3999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC---CCCCChhHhhccC-----CCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK---PDLPNLSDLMKTT-----PASE 627 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~ 627 (1102)
+++|+++.++.+++.+++++++++++|++++..+.+..+...++..+.+.+.... .....+....... ....
T Consensus 98 i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (541)
T d1lcia_ 98 AVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYD 177 (541)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCCTTT
T ss_pred EEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999988888888888775544433222 1222222222211 1112
Q ss_pred CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh---ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH---LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 628 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
..+.....+++++||+|||||||.||||+++|+++.....+... ...+.+++++++.+|++|..+ ....+..+..|
T Consensus 178 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~ 256 (541)
T d1lcia_ 178 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG-MFTTLGYLICG 256 (541)
T ss_dssp CCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHH-HHHHHHHHHHT
T ss_pred cCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccc-ccccccccccc
Confidence 22234566789999999999999999999999999876665544 346788999999999999988 77888888999
Q ss_pred ceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcc--ccccceeeeeccCCCHHHHHHHHHHhCcchhhhc
Q psy12852 705 SSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA--DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF 782 (1102)
Q Consensus 705 ~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 782 (1102)
+.+++....+.......+..+++|.+.++|+++..++....... ...++.+++||+++++...+.+.+.++...+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~ 336 (541)
T d1lcia_ 257 FRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 336 (541)
T ss_dssp CEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCE
T ss_pred cccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeec
Confidence 99999888999999999999999999999999999887655433 3467778889999999999999999987789999
Q ss_pred cccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcc
Q psy12852 783 YGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859 (1102)
Q Consensus 783 YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~ 859 (1102)
||+||++..++.... ..+++|++. .++.+.++|+++|.++ +.|++||++ ++|+ .
T Consensus 337 YG~TE~~~~~~~~~~~~~~~~svG~p~-------~~~~~~i~d~d~~~~~-----------~~g~~Gel~----v~g~-~ 393 (541)
T d1lcia_ 337 YGLTETTSAILITPEGDDKPGAVGKVV-------PFFEAKVVDLDTGKTL-----------GVNQRGELC----VRGP-M 393 (541)
T ss_dssp ECCGGGSSCSEECCCC---CCCCBEEC-------TTCEEEEECTTTCCBC-----------CTTCCEEEE----EEST-T
T ss_pred CCccccCceEEecCcccCCCCcccccc-------CCCEEEEEECCCCcCC-----------CCCCeEEEE----EccC-c
Confidence 999999987765432 344555543 3556777887776544 778888766 5588 5
Q ss_pred cccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEE
Q psy12852 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYG 939 (1102)
Q Consensus 860 ~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~ 939 (1102)
++.||++++.....++. +++||+|||+|++++||.++++||+||+||++|+||+|.|||++|.++|+|.+|+|++
T Consensus 394 ~~~gY~~~~~~~~~~~~-----~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~ 468 (541)
T d1lcia_ 394 IMSGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG 468 (541)
T ss_dssp SCSEETTBHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred cCCeeCCChhhhhhccc-----CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 89999999855544432 4789999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCC-CcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 940 VKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAY-ARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 940 ~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~-~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++++. .++..+++++ .++...+.++|+++|+++|++| ++|..++++++||+|++|||||++|+++.
T Consensus 469 ~~~~~-~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~ 536 (541)
T d1lcia_ 469 LPDDD-AGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 536 (541)
T ss_dssp EEETT-TEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHH
T ss_pred EECCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHH
Confidence 77654 3444333333 4556788899999999999876 68999999999999999999999999874
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.6e-63 Score=597.59 Aligned_cols=489 Identities=19% Similarity=0.200 Sum_probs=352.0
Q ss_pred HHHHHHHHhhcccCCcccchhhcc-------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN-------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~-------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+.+++++ +|+++||++|+++.. +|+||.++++++|++|.+.|+++|++|+|+++|++++++++|||+++|+
T Consensus 13 l~~~l~~--~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 90 (534)
T d1v25a_ 13 LWDFLER--AAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA 90 (534)
T ss_dssp THHHHHH--HHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--HHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCc
Confidence 4445555 699999999998633 4999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQ 635 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1102)
+++|++|.++.+++.++++++++++++++.........+....+......................... ........
T Consensus 91 v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 167 (534)
T d1v25a_ 91 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE---EADPVRVP 167 (534)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCS---CCCCCCCC
T ss_pred EEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccccccccc---cccccccc
Confidence 999999999999999999999999999999999888888777776554444332211111111111111 11224567
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhh--hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC-
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG--QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK- 712 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~--~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~- 712 (1102)
++++++|+|||||||.||||+++|++++... ......+....++++++.+|++|..+ ....+.++..|+++++..+
T Consensus 168 ~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~-~~~~~~~~~~g~~~v~~~~~ 246 (534)
T d1v25a_ 168 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA-WCLPYAATLVGAKQVLPGPR 246 (534)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH-HTHHHHHHHHTCEEEECTTC
T ss_pred cCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcc-ccccceeeeecceeeecccc
Confidence 8899999999999999999999999998655 34445566789999999999999988 6666666777777777654
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
+++..+...+.++++|++.++|+++..++..... ....++|.+++||++++++..+++.+. +. ++++.||+||++.
T Consensus 247 ~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-~~-~i~~~yG~te~~~ 324 (534)
T d1v25a_ 247 LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM-GV-EVRQGYGLTETSP 324 (534)
T ss_dssp CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT-TC-EEEEEEECGGGSS
T ss_pred ccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh-CC-eeeeecccccccc
Confidence 8999999999999999999999999988775332 334577888999999999999988764 33 7999999999998
Q ss_pred ccccCCCC--------------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecC
Q psy12852 791 NLVNMDNT--------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856 (1102)
Q Consensus 791 ~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G 856 (1102)
.++..... ..++|.+. .++.+.++|++ |+.+ +...|++||| +++|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-------~g~~~~i~d~~-~~~~---------~~~~~~~Gel----~v~g 383 (534)
T d1v25a_ 325 VVVQNFVKSHLESLSEEEKLTLKAKTGLPI-------PLVRLRVADEE-GRPV---------PKDGKALGEV----QLKG 383 (534)
T ss_dssp EEEECCCCGGGTTSCHHHHHHHHTSCBEEC-------TTCEEEEECTT-SCBC---------CSSSCCCEEE----EEES
T ss_pred ceeecccCccccccCccccccccccceecc-------CCcEEEEECCC-CCCC---------CCCCCeeEEE----EEcC
Confidence 77643211 12333332 34566677765 4443 1233555665 4669
Q ss_pred CcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeE
Q psy12852 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFT 936 (1102)
Q Consensus 857 ~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~ 936 (1102)
+ .++.||++++..+...+. .++||+|||+|++++||.++++||+||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 384 ~-~v~~gY~~~~~~t~~~~~-----~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~ 457 (534)
T d1v25a_ 384 P-WITGGYYGNEEATRSALT-----PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAA 457 (534)
T ss_dssp T-TSBSSCBTCHHHHHTTBC-----TTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------C
T ss_pred C-cccceecCChhhhhhhcc-----cCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 8 489999998754443332 3789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCceeEEEEE-cCCCccCHHHHHH-HHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 937 VYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQ-GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 937 vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~-~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|++++++. .++ .+++++ ..+.....+++.+ .++++||+|++|..|+++++||+|+||||||++|++++.+
T Consensus 458 v~~~~~~~-~~~-~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 458 VVAIPHPK-WQE-RPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp EEEEECSS-SSE-EEEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred EEEEECCC-CCe-EEEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHh
Confidence 99977654 333 444444 4334444555555 4788999999999999999999999999999999998754
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.5e-61 Score=580.62 Aligned_cols=488 Identities=18% Similarity=0.234 Sum_probs=385.0
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
+++.++++ +|+++||++|+++.++ |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 26 tl~~~l~~--~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~v 103 (536)
T d1mdba_ 26 TFGDLLRD--RAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV 103 (536)
T ss_dssp CHHHHHHH--HHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHH--HHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence 34555554 6999999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhH-----HHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPE-----IEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
|++|.++.+++.+++++++++++++++..... ........+................+.+.. ........
T Consensus 104 pl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 178 (536)
T d1mdba_ 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLH-----TEPVKLPE 178 (536)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCC-----CCCCCCCC
T ss_pred ecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcc-----cCCcCCCc
Confidence 99999999999999999999999997654321 122222233322222222222222222211 11222246
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhH-hhcCceEEEeCC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPA-LILGSSIAIRTK 712 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~-l~~G~~lv~~~~ 712 (1102)
..++|+++|+|||||||.||||++||+++..++......+++.++|++++..|++|..++...++.. +..|.+++..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ 258 (536)
T d1mdba_ 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258 (536)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS
T ss_pred cCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCC
Confidence 7889999999999999999999999999999999999999999999999999999999854444444 444677777777
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
+++..+...+++++++.+..+|+.+..+..... ......++.+++||+++++...+++.+.++. ..+..||.+|.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 337 (536)
T d1mdba_ 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFGMAEGLV 337 (536)
T ss_dssp SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEEEEEECTTSCE
T ss_pred CCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCc-eeeeccccccccc
Confidence 999999999999999999999999888766533 2344567888999999999999999999987 6778888888776
Q ss_pred ccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 791 NLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 791 ~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
.+...... .+..|.+. .+.....++.++|. .++.|+.||++ +.|+ .++.||++
T Consensus 338 ~~~~~~~~~~~~~~~~g~p~-------~~~~~~~v~~~~g~-----------~~~~~~~Gel~----v~g~-~~~~gY~~ 394 (536)
T d1mdba_ 338 NYTRLDDPEEIIVNTQGKPM-------SPYDESRVWDDHDR-----------DVKPGETGHLL----TRGP-YTIRGYYK 394 (536)
T ss_dssp EECCTTSCHHHHHHCCCEES-------STTCEEEEECTTSC-----------BCCTTCCEEEE----EECT-TSCSSCTT
T ss_pred cccccccccccccCCcccCC-------CCcceEEEEcCCCC-----------eecccccceee----cCCC-cccccccc
Confidence 55443321 12233321 23344445555454 34778888766 5588 58899999
Q ss_pred chHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCC
Q psy12852 867 KKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD 946 (1102)
Q Consensus 867 ~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 946 (1102)
++..+..... .++||+|||+|++++||+|+++||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .
T Consensus 395 ~~~~~~~~~~-----~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~-~ 468 (536)
T d1mdba_ 395 AEEHNAASFT-----EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF-L 468 (536)
T ss_dssp CHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT-T
T ss_pred cccccccccc-----ccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC-C
Confidence 8744433332 378999999999999999999999999999999999999999999999999999999976654 3
Q ss_pred CceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 947 GRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 947 ~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++..+++++..+...+.++|+++++++ ||.|++|+.|+++++||+|+||||||++|++++
T Consensus 469 g~~~~a~v~~~~~~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 529 (536)
T d1mdba_ 469 GERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAI 529 (536)
T ss_dssp EEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHH
T ss_pred CeEEEEEEEECCCCCCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHH
Confidence 444455555556677899999999975 999999999999999999999999999998764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=5.6e-59 Score=557.76 Aligned_cols=483 Identities=20% Similarity=0.235 Sum_probs=380.6
Q ss_pred HHHHHHHHhhcccCCcccchhhcch-----HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL-----EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~-----Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
++++++. +|+++||++|+.+.+. |+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 4 i~~~l~~--~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 4 VNEMLRR--AATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp HHHHHHH--HHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHH--HHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 4445444 6999999999987542 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
+|++|.++.+++++++++++++++|++..... ...........+++.+++... ................+++
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 153 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGARIIFLGDLVR-------DGEPYSYGPPIEDPQREPA 153 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCCEEEEHHHHEE-------TTEECCCSCCCCCCCCCTT
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhccccccccchhhhh-------hhcccccCCccccccchhh
Confidence 99999999999999999999999999876432 233333444456655432110 0001111222233567789
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccC--CCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS--LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
++++++|||||||.||+|+++|+++..++......+. ....++++..+|+.|..+.....+.+...++++++.+.+++
T Consensus 154 ~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (503)
T d3cw9a1 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP 233 (503)
T ss_dssp SEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCH
T ss_pred hhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccCh
Confidence 9999999999999999999999999998877776544 45668999999999988877788888899999999999999
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhcc----CCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
..+...+..++++.+..+|+.+..++... .......+|.+++||++++++....+...++. .+.+.||.||++..
T Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~yg~~e~~~~ 312 (503)
T d3cw9a1 234 VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNS 312 (503)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCS-EEEEEEEETTTEEE
T ss_pred HHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccccc-ccccccccccccee
Confidence 99999999999999999999888765532 22334578889999999999999999998877 79999999999887
Q ss_pred cccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HH
Q psy12852 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ES 870 (1102)
Q Consensus 792 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t 870 (1102)
+...............+ .+.....+.... ...++.|+.|++.. . +......||++++ .+
T Consensus 313 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------~~~~~~g~~g~~~~--~--~~~~~~~~~~~~~~~t 372 (503)
T d3cw9a1 313 LYMRQPKTGTEMAPGFF-----SEVRIVRIGGGV-----------DEIVANGEEGELIV--A--ASDSAFVGYLNQPQAT 372 (503)
T ss_dssp EEEESCSSSSEEBCCTT-----CCEEEECTTSCT-----------TCBCCTTCCEEEEE--E--CCTTSCCCBTTCHHHH
T ss_pred eeecccccccccccccc-----ccceeeeeeccc-----------CcccCCCccccccc--c--ccccccccccCChhhh
Confidence 76544332222211111 122222222222 23457788887652 2 3334566787776 55
Q ss_pred HHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCcee
Q psy12852 871 QKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG 950 (1102)
Q Consensus 871 ~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~ 950 (1102)
.++| . ++||+|||+|++++||.|+++||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++ .
T Consensus 373 ~~~~-~------~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~-~g~-~ 443 (503)
T d3cw9a1 373 AEKL-Q------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR-WGQ-S 443 (503)
T ss_dssp HHHE-E------TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT-TEE-E
T ss_pred HHHh-c------CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCC-CCe-E
Confidence 5544 2 67999999999999999999999999999999999999999999999999999999977654 233 3
Q ss_pred EEEEE--cCCCccCHHHHHHHHH-ccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 951 MIAIV--DTSNQVDLKLLVQGLD-ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 951 l~~~v--~~~~~~~~~~l~~~l~-~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
+++++ ..+...+.++|+++++ ++||+|++|+.|+++++||+|+||||||++|+++
T Consensus 444 ~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~ 501 (503)
T d3cw9a1 444 VTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501 (503)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHh
Confidence 44444 3455778899999995 7899999999999999999999999999999875
|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor and KH domain-containing protein TDRKH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.2e-19 Score=155.11 Aligned_cols=93 Identities=29% Similarity=0.430 Sum_probs=78.8
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.++.+++.+++...... ...+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||++.|+.++||+| ++
T Consensus 4 ~l~~L~~~l~~~y~~~~~~--~~~~~~G~~~~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l--~~ 79 (97)
T d2diqa1 4 QLDKLVNEMTQHYENSVPE--DLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL--RS 79 (97)
T ss_dssp HHHHHHHHHHHHHTTSCCC--CCCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC--CH
T ss_pred HHHHHHHHHHHHHccCCCC--cCCCCCCCEEEEEECCCCeEEEEEEEEECCCCEEEEEEEeeCCEEEEeHHHhhcc--CH
Confidence 4455566665555543332 3345899999999999999999999999877789999999999999999999999 99
Q ss_pred cccCCCcceEEEEeece
Q psy12852 309 LISNLPFQAIECYLAGV 325 (1102)
Q Consensus 309 ~l~~lP~qA~~c~L~~v 325 (1102)
.|..+|+||++|+|+||
T Consensus 80 ~~~~lP~~A~~c~L~~v 96 (97)
T d2diqa1 80 DFLSLPFQAIECSLARI 96 (97)
T ss_dssp HHHSSCCSSCCSCSSCS
T ss_pred HHhhCChhhEEEEECcC
Confidence 99999999999999997
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=99.64 E-value=4.5e-17 Score=197.08 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=132.1
Q ss_pred chhhhhhhHHHHHhhhhHHHHhhhcccch-hHHHHHHhhh---hhhHHHHHH--HHHhhhcccccccCCCCHHHHHH-HH
Q psy12852 61 LDQDEMNDCTLVGIVNPSLFFLRLNQFQD-IRVYIILLTL---PRDVNIIYS--LSRAILGTKRMAATNTTLVSEFK-KS 133 (1102)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~---~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~ 133 (1102)
.+++.+.++.+.+++...|..||.||+.. -+++..+... ......+.+ ..+.....+||.+...|+++++. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh 81 (643)
T d1pg4a_ 2 KHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRH 81 (643)
T ss_dssp CBCCCHHHHHHCSSCHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGG
T ss_pred CCCCCHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHhheeEECCCcccccCccCCCCCCCeeCCCChhhHHHHHHHHH
Confidence 34577889999999999999999999882 2222221100 000000000 00122245799999999998655 77
Q ss_pred HhcCCCCcEEEECC------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeecccc
Q psy12852 134 VKRRPNAPCYYFQD------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVV 207 (1102)
Q Consensus 134 ~~~~p~~~al~~~~------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~ 207 (1102)
++.+||++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 82 ~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~ 161 (643)
T d1pg4a_ 82 LQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 161 (643)
T ss_dssp HHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCC
Confidence 88899999999632 679999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhhhccccceee
Q psy12852 208 WLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 208 ~~~~~~~~~l~~~~~~~l 225 (1102)
++++++.+++++++++++
T Consensus 162 ~~~~~l~~~l~~~~~~~l 179 (643)
T d1pg4a_ 162 FSPEAVAGCIIDSSSRLV 179 (643)
T ss_dssp SCHHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHhcCCCEE
Confidence 999999999999999988
|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: P100 co-activator, SND1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.6e-16 Score=135.04 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=66.7
Q ss_pred hhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 230 LMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 230 l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
+.++++++.+.+....+......++.|++|+++|+ |+.||||+|+++.+++.++|+||||||++.|+.++||+| ++.
T Consensus 3 le~Lm~~l~~~~~~~~~~~~~~~p~~G~~c~a~~~-D~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l--~~~ 79 (90)
T d2hqxa1 3 FQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL--SPA 79 (90)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTCCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC--CGG
T ss_pred HHHHHHHHHHHHhcCCCCCCccCCCCCCEEEEEEc-CCCEEEEEEEEeCCCCeEEEEEEeCCCCEEEEHHHeeEC--CHH
Confidence 44555555544444333222233478999999996 889999999998766789999999999999999999999 888
Q ss_pred cc--CCCcceE
Q psy12852 310 IS--NLPFQAI 318 (1102)
Q Consensus 310 l~--~lP~qA~ 318 (1102)
|. .+|+||-
T Consensus 80 f~~~~lP~QA~ 90 (90)
T d2hqxa1 80 FSTRVLPAQAT 90 (90)
T ss_dssp GSTTTSCCCC-
T ss_pred HcCCCCCCCCC
Confidence 84 5999983
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=99.57 E-value=8.5e-15 Score=172.99 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...|+.+.|+++|+++||++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 21 ~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~ 100 (514)
T d1amua_ 21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 100 (514)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+|+.++.+++.+++++++++++
T Consensus 101 v~l~~~~~~~~l~~~l~~~~~~~l 124 (514)
T d1amua_ 101 VPIDIEYPKERIQYILDDSQARML 124 (514)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EEeCCCCCHHHHHHHHhccCCcEE
Confidence 999999999999999999999998
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=1.4e-14 Score=171.90 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...|+.+.|.++|+++||++|+++.++++||+||.+++.++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~ 102 (536)
T d1mdba_ 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (536)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++|.++.+++.+++++++++++
T Consensus 103 vpl~~~~~~~~~~~~l~~~~~~~~ 126 (536)
T d1mdba_ 103 VFALPSHRSSEITYFCEFAEAAAY 126 (536)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEE
T ss_pred EecCCCCCHHHHHHHHHhhccceE
Confidence 999999999999999999999887
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.51 E-value=4.6e-14 Score=165.77 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
.|+.+.|+++++++||++|+++. ++++||+||.+++.++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999984 5699999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++|.++++++.+++++++++++
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~ 105 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAA 105 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEE
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEE
Confidence 999999999999999999999988
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=4.9e-14 Score=167.19 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=104.2
Q ss_pred ccccccCCCCHHHHHHHHHhcCCCCcEEEECC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q psy12852 116 TKRMAATNTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191 (1102)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~p~~~al~~~~----~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~ 191 (1102)
|.++...+.|+++.|++.++++||++|+++.. +++||+||.+++.++|+.|.+.|+++||+|+++++|+++|++++
T Consensus 3 p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 3 PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp BCCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCccCCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 56777788899999999999999999999832 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 192 LGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 192 la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|||+++|++++|++|.++.+++.+++++++++++
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i 116 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 116 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999988
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=2e-14 Score=174.45 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=102.1
Q ss_pred cccccccCCCCHHHH-HHHHHhcCCCCcEEEEC------CeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCChh
Q psy12852 115 GTKRMAATNTTLVSE-FKKSVKRRPNAPCYYFQ------DETWTIKQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPE 186 (1102)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~al~~~------~~~~Ty~el~~~~~~~a~~L~-~~G~~~gd~Vai~~~n~~e 186 (1102)
..+||.+...|+.++ ++++++++||++|+++. .+++||+||.++++++|++|+ ++|+++||+|+++++|+++
T Consensus 49 ~~~wf~~~~lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e 128 (640)
T d1ry2a_ 49 NNAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE 128 (640)
T ss_dssp TCCBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH
T ss_pred CCcCCCCCchhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHH
Confidence 347898888898664 66889999999999973 268999999999999999997 6799999999999999999
Q ss_pred HHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 187 YVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 187 ~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++++|||+++|++++|+++.++++++.+++++++++++
T Consensus 129 ~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~ 167 (640)
T d1ry2a_ 129 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVV 167 (640)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999988
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.2e-14 Score=108.54 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=47.9
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecC-CCccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTS-DSELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~-~~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
+++|++|+|+|+.|+.||||+|+++. +.+.+.|+|+||||++.|+.++|+++
T Consensus 4 wkvG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~ 56 (59)
T d1mhna_ 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHHHCcCC
Confidence 48999999999999999999999985 44568999999999999999999988
|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor domain-containing protein 3, TDRD3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=9e-14 Score=108.42 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=48.2
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
.++|++|+|+|+.|+.||||+|+++.. ++.+.|+|+||||.+.|+.++||+|
T Consensus 3 wkvG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l 55 (60)
T d2d9ta1 3 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV 55 (60)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred cCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHHHcCcC
Confidence 479999999999999999999999874 4468999999999999999999999
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=99.38 E-value=7.1e-13 Score=157.23 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=97.5
Q ss_pred ccCCCCHHHHHHHHHhcC---CCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 120 AATNTTLVSEFKKSVKRR---PNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~---p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
+.+..++.+.|.+.++++ |+.+|+.+. ++++||+||.+++.++|+.|++.|+++||+|+++++|+++|++++|||
T Consensus 13 p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~ 92 (541)
T d1lcia_ 13 PLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGA 92 (541)
T ss_dssp CCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHH
Confidence 344568999988888776 777788874 468999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++++|+|+.++.+++.+++++++++++
T Consensus 93 ~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T d1lcia_ 93 LFIGVAVAPANDIYNERELLNSMNISQPTVV 123 (541)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhccceEE
Confidence 9999999999999999999999999999998
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=99.29 E-value=4.6e-14 Score=116.63 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=60.7
Q ss_pred HHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1032 YEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.|+.+..+|+++||. +.+++++|||++|||||+|++++++|+++ |+.+++.++|+|||+++||+.
T Consensus 8 ~E~~l~~i~~~vL~~-~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~ 73 (76)
T d2gdwa1 8 VESKLAEIWERVLGV-SGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQY 73 (76)
T ss_dssp HHHHHHHHHHHHTTS-SCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence 678888899999998 78999999999999999999999999876 999999999999999999863
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=3.2e-10 Score=92.98 Aligned_cols=64 Identities=5% Similarity=-0.006 Sum_probs=53.4
Q ss_pred HhhhcCCCcchhhh--hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1033 EKIMNDQPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~--~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++.+...|+++||. .+.|+++++||++|+|||+|+++.++|++. |+.+++.+|+ ++|+++|++.
T Consensus 6 e~~l~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~-~~Ti~~L~el 72 (76)
T d2pnga1 6 QRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVR-QLTLRKLQEM 72 (76)
T ss_dssp CCCGGGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHT-TCCSHHHHHT
T ss_pred HHHHHHHHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCCCCHHHHH-HhhHHHHHHH
Confidence 34455677888885 468999999999999999999999999876 9999999987 6887776643
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.45 E-value=9.7e-09 Score=86.04 Aligned_cols=65 Identities=8% Similarity=0.069 Sum_probs=54.3
Q ss_pred HHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEec--cccccccC
Q psy12852 1031 TYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRN--FSLDVMAP 1096 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~--pti~~laa 1096 (1102)
..++++...|+..+.. +.++.+++||++|+|||.+++|+..|++. |+.++..+++.+ |||+.||+
T Consensus 4 ~i~~il~~~~~l~~~~-~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~ 71 (83)
T d2jq4a1 4 TIREILAKFGQLPTPV-DTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIED 71 (83)
T ss_dssp HHHHHHHHTSCCSSCG-GGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHH
T ss_pred HHHHHHHHHHccCCCH-HHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhHHHHHH
Confidence 3455666666544444 78999999999999999999999999876 999999999964 99999885
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=98.39 E-value=1.3e-08 Score=85.69 Aligned_cols=71 Identities=10% Similarity=-0.026 Sum_probs=61.1
Q ss_pred cCHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1027 MTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1027 ~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.+.+..++++....+..+|. .+.+..+.+|+++|+|||.+++++.++++. |++++...+|++||+++|+++
T Consensus 5 ~t~d~l~~~l~e~~~~~~g~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~ 77 (86)
T d2af8a_ 5 LTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDL 77 (86)
T ss_dssp CCHHHHHHHHHHTTCCCSCCCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHccccCCCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHH
Confidence 34555677777777777776 467899999999999999999999999876 999999999999999999853
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=98.37 E-value=1.1e-08 Score=84.97 Aligned_cols=70 Identities=9% Similarity=-0.046 Sum_probs=55.8
Q ss_pred CHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+.+...+++...+....+....+..+.+|+++|+|||.+++++.+|++. |+.++...+|.+||+++|+++
T Consensus 4 T~e~l~~il~e~~g~~~~~~~~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~ 74 (82)
T d1or5a_ 4 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDE 74 (82)
T ss_dssp CHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHH
T ss_pred cHHHHHHHHHHHhCCCcccccCCCcCcCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHH
Confidence 3444555555555555544235678899999999999999999999876 999999999999999999864
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=98.27 E-value=1.3e-08 Score=87.39 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=58.9
Q ss_pred cCHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1027 MTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1027 ~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++.+...++++...+..++. .+.+..+.+|+++|+|||.+++|+.+|++. |++++...+|.+||+++|+++
T Consensus 4 ~t~d~l~~~lre~~~~~~~~~~~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~ 76 (95)
T d1nq4a_ 4 LTLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEM 76 (95)
T ss_dssp CCHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHhHHhCCChhhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHH
Confidence 34455566666666666665 467889999999999999999999999765 999999999999999999853
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=98.24 E-value=5e-08 Score=80.81 Aligned_cols=66 Identities=8% Similarity=-0.035 Sum_probs=56.1
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccccccC-chhhHHHHHHhhhCC-CCccceEEEE--eccccccccCC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFYGYAD-KKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAPP 1097 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGg-dSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa~ 1097 (1102)
.++.+..++++++|. ...++++.+||+.|| |||.+++|+..+++. |+.++..+++ .++|+++|+++
T Consensus 5 I~~~v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~ 75 (80)
T d1dv5a_ 5 IKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAK 75 (80)
T ss_dssp HHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhcCCCccccccCCCCHHHHHHHHHHHHHHHCCCCCHHHhhHHhCCCHHHHHHH
Confidence 455556677778876 356999999999987 999999999999876 9999999999 77999998864
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=2.2e-08 Score=84.51 Aligned_cols=68 Identities=6% Similarity=-0.059 Sum_probs=58.8
Q ss_pred HHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1030 NTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+...+.+..+++.++|. .+.++++.+|+++|+|||.+++++.++++. |+.++..+++.+||+++|+++
T Consensus 7 ~~i~~~l~~iv~~~l~~~~~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~ 76 (85)
T d1vkua_ 7 KKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDI 76 (85)
T ss_dssp HHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCCCHHHhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHHHHH
Confidence 34555666777788876 468999999999999999999999999876 999999999999999999863
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=2e-07 Score=83.42 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=60.3
Q ss_pred cCHHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1027 MTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1027 ~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
++.+...+.+..+|+.++|. .+.|+.+.+|| ++|+|||.+++|+.+|++. |+.++..++|++||+++|+.
T Consensus 3 ~t~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~ 75 (115)
T d1klpa_ 3 VTQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVA 75 (115)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCccccCcccchhhhcccchhHHHHHHHHHHHHHCCCCCHHHHHhCccHHHHHH
Confidence 34555667777888888887 46899999998 5999999999999999875 99999999999999999874
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=97.65 E-value=6.1e-07 Score=72.81 Aligned_cols=62 Identities=3% Similarity=-0.150 Sum_probs=52.8
Q ss_pred hcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1036 MNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1036 l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+..++++.++. .+.+.++.+|+ ++|.|||.++.++.+++++ |++++..+++.++|+++|+++
T Consensus 8 v~~iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~ 72 (74)
T d1f80d_ 8 VTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNY 72 (74)
T ss_dssp HHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHH
T ss_pred HHHHHHHHHCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHH
Confidence 44456666665 35799999999 5999999999999999875 999999999999999998754
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=4.8e-05 Score=61.73 Aligned_cols=63 Identities=5% Similarity=-0.003 Sum_probs=52.1
Q ss_pred hhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1034 KIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1034 ~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+.+..+.+..++. .+.+.++.+|. ++|.|||..+.|+..+++. |++++..+++..+|+++|+.
T Consensus 5 ~~v~~iia~~l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~ 70 (77)
T d1t8ka_ 5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAID 70 (77)
T ss_dssp HHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHcCCCCcchhccccchhHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHH
Confidence 3344445556665 46799999998 5999999999999999876 99999999999999998864
|
| >d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Staphylococcal nuclease family: Staphylococcal nuclease domain: Staphylococcal nuclease species: Staphylococcus aureus [TaxId: 1280]
Probab=88.25 E-value=2.8 Score=36.53 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=56.7
Q ss_pred EEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecC--------CCCCCHHHHHHHH
Q psy12852 270 NRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPL--------EGVWSQAAYDFLD 341 (1102)
Q Consensus 270 yRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~--------~~~Ws~ea~~~f~ 341 (1102)
.-|+|+++.+.+.+.|.. -|. -+..+|+||..+ ...|..+|.++++
T Consensus 5 ~~a~V~~V~DGDT~~v~~--~~~------------------------~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~ 58 (136)
T d1snoa_ 5 EPATLIKAIDGDTVKLMY--KGQ------------------------PMTFRLLLVDTPETKHPKKGVEKYGPEASAFTK 58 (136)
T ss_dssp EEEEEEEECSSSEEEEEE--TTE------------------------EEEEEETTEECCCSSBTTTBSCTTHHHHHHHHH
T ss_pred cceEEEEEEcCCEEEEEe--CCc------------------------EEEEEEEEEcccccccCCcchhhhHHHHHHHHH
Confidence 357788888877765532 121 234666676533 1258899999999
Q ss_pred HHHhhhceEEEEEEEeee-cC-ceeEEEEEEcCCCcccHHHHHHHcCcceeec
Q psy12852 342 DFTRLFARVVSVKLHGEE-TG-GRRYAVELFDLDEELNINKELVALDLAKFSE 392 (1102)
Q Consensus 342 ~l~~~~~~~~~v~~~~~~-~~-~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~~ 392 (1102)
++.. ..+.+.+...... .+ ...+...++. .+.+||..|++.|+|....
T Consensus 59 ~ll~-~~~~v~~~~~~~~~~D~~gR~la~v~~--~g~~l~~~Lv~~G~A~~~~ 108 (136)
T d1snoa_ 59 KMVE-NAKKIEVEFDKGQRTDKYGRGLAYIYA--DGKMVNEALVRQGLAKVAY 108 (136)
T ss_dssp HHHH-TCSCEEEEECSSCSBCTTSCEEEEEEE--TTEEHHHHHHHTTSCEECC
T ss_pred HHhh-cCceeEEEEeccccCCccccceeEEEE--ecchhHHHHHHCCCEEEee
Confidence 8832 1245555442221 11 1124444443 4579999999999998753
|