Psyllid ID: psy12922

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI
Secondary Structure (PSIPRED)
cccccEEEEEEEEcccccccHHEEEEEccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MADCNQTYKILVlgdsnvgktcivhrfcdetyydtyistigidfkqkiidlddvptklqIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEevgcnsnqnaspDVVKVLAgnksdvktqravQTKDAQmladnyslpfyevsckqnINIDEAFLTLARLIREQTRLQAI
Flexible Loop (DISEMBL)
MADCNQTYKIlvlgdsnvgkTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIwdtagqerfRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAgnksdvktqravqtkdaqMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI
Low Complexity Region (SEG)
MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI
Disordered region (IsUnstruct)
****NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS*******VVKVLA****************AQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR********
Disordered Region (DISOPRED)
*ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT*****
Disordered Region (DISEMBL)
MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK***********KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI
Disordered Region (DISPRO)
*ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q5F470	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	2e-49
Q5R4A3	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	3e-49
P35280	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	4e-49
P55258	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	4e-49
Q4R5P1	207	Ras-related protein Rab-8	N/A	N/A	0.891	0.792	0.538	5e-49
P61006	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	5e-49
P61007	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	5e-49
P17609	200	GTP-binding protein ypt2	yes	N/A	0.885	0.815	0.541	9e-49
A4FV54	207	Ras-related protein Rab-8	yes	N/A	0.891	0.792	0.538	1e-48
Q39433	215	Ras-related protein RAB1B	N/A	N/A	0.885	0.758	0.532	1e-48

>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC + RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF+++  W++NIEE       +ASPDV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEE-------HASPDVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D   +R V  +  + LA ++ + F E S K NINI+ AF TLAR I+ +
Sbjct: 122 KCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release.
Gallus gallus (taxid: 9031)

>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1

 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Pongo abelii (taxid: 9601)

>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Rattus norvegicus (taxid: 10116)

>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Mus musculus (taxid: 10090)

>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Macaca fascicularis (taxid: 9541)

>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Homo sapiens (taxid: 9606)

>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Canis familiaris (taxid: 9615)

>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt2 PE=3 SV=1

 Score =  192 bits (489), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 7/170 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+L++GDS VGK+C++ RF ++++  ++I+TIGIDFK + I+LD    KLQIWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGAMGILL+YDVT+ +SF ++  W  N+E       Q+AS +V K+L GNK
Sbjct: 71  FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVE-------QHASENVYKILIGNK 123

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            D + QR V  +  Q LAD   + F E S K N+N+DEAF TLAR I++Q
Sbjct: 124 CDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQ 173

Protein transport. Probably involved in vesicular traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAK 172

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Bos taurus (taxid: 9913)

>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 129/171 (75%), Gaps = 8/171 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+L++GDS VGK+C++ RF D ++  ++I+TIGIDFK + I+LD    KLQIWDTAGQER
Sbjct: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGAMGILL+YDVT+  SF ++  W++NIE       Q+AS +V K+L GNK
Sbjct: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE-------QHASDNVNKILVGNK 129

Query: 129 SDV-KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +D+ +++RAV T   Q LAD Y + F+E S K N+N++E F ++AR I+++
Sbjct: 130 ADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180

Beta vulgaris (taxid: 161934)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
307197094	760	Ras-related protein Rab-8A [Harpegnathos	0.885	0.214	0.752	1e-71
345494263	208	PREDICTED: ras-related protein Rab-8A-li	0.885	0.783	0.758	2e-71
322794138	207	hypothetical protein SINV_09491 [Solenop	0.885	0.787	0.758	3e-71
307180592	279	Ras-related protein Rab-8A [Camponotus f	0.885	0.584	0.752	4e-71
328785884	760	PREDICTED: LOW QUALITY PROTEIN: hypothet	0.885	0.214	0.747	5e-71
157124773	219	ras-related protein Rab-8A, putative [Ae	0.918	0.771	0.751	1e-70
332028544	208	Ras-related protein Rab-8A [Acromyrmex e	0.885	0.783	0.752	1e-70
312376692	219	hypothetical protein AND_12415 [Anophele	0.918	0.771	0.740	2e-70
58378592	219	AGAP006873-PA [Anopheles gambiae str. PE	0.918	0.771	0.740	2e-70
357603715	204	hypothetical protein KGM_16919 [Danaus p	0.945	0.852	0.714	2e-70

>gi|307197094|gb|EFN78462.1| Ras-related protein Rab-8A [Harpegnathos saltator]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 143/170 (84%), Gaps = 7/170 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQKII+LD  P KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIINLDGTPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF HL+YWL+NI+E       NASPDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQE-------NASPDVVK 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           VLA NK D    RAV  +  Q +A+N+ +PF+EVSCK+NINI+EAFLTLA
Sbjct: 117 VLAANKCDATAHRAVDAERGQKIAENFDMPFFEVSCKENINIEEAFLTLA 166

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494263|ref|XP_001605584.2| PREDICTED: ras-related protein Rab-8A-like [Nasonia vitripennis]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 144/170 (84%), Gaps = 7/170 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQKII+LD  P KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIINLDGTPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF HL+YWL+NI+E       NASPDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQE-------NASPDVVK 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           VLA NK D  TQRAV  +  Q +A+N+ +PF+EVSCK+NINI+EAFL LA
Sbjct: 117 VLAANKCDASTQRAVDAERGQKIAENFDMPFFEVSCKENINIEEAFLALA 166

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794138|gb|EFZ17347.1| hypothetical protein SINV_09491 [Solenopsis invicta]

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 144/170 (84%), Gaps = 7/170 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQKII+LD  P KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIINLDGTPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF HL+YWL+NI+E       NASPDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQE-------NASPDVVK 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           VLA NK D   QRAV  +  Q +A+N+ +PF+EVSCK+NINI+EAFLTLA
Sbjct: 117 VLAANKCDATAQRAVDAERGQKIAENFDMPFFEVSCKENINIEEAFLTLA 166

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180592|gb|EFN68547.1| Ras-related protein Rab-8A [Camponotus floridanus]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 143/170 (84%), Gaps = 7/170 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQKII+LD  P KLQIWD
Sbjct: 67  DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIINLDGTPIKLQIWD 126

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF HL+YWL+NI+E       NASPDVVK
Sbjct: 127 TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQE-------NASPDVVK 179

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           VLA NK D    RAV  +  Q +A+N+ +PF+EVSCK+NINI+EAFLTLA
Sbjct: 180 VLAANKCDATAHRAVDAERGQKIAENFDMPFFEVSCKENINIEEAFLTLA 229

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785884|ref|XP_392879.2| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC409364 isoform 1 [Apis mellifera]

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 144/170 (84%), Gaps = 7/170 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQKII+LD  P KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIINLDGTPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFR LTTAYYRGAMGILLMYDVT+LESF HL+YWL+NI+E       NASPDVVK
Sbjct: 64  TAGQERFRALTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQE-------NASPDVVK 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           V+A NK DV T RAV  +  Q +A+++ +PF+EVSCK+NINI+EAFLTLA
Sbjct: 117 VVAANKCDVTTNRAVDAERGQKIAESFDMPFFEVSCKENINIEEAFLTLA 166

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124773|ref|XP_001660517.1| ras-related protein Rab-8A, putative [Aedes aegypti] gi|108873888|gb|EAT38113.1| AAEL009974-PA [Aedes aegypti]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 149/177 (84%), Gaps = 8/177 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQK+I+LD VP KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLINLDGVPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF +L+YWL+NI+E       NASPDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNNLSYWLRNIQE-------NASPDVVK 116

Query: 123 VLAGNKSDV-KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           VLAGNK +    QRAV       +A+N+ +PF+EVSCKQNINI+EAFLTLAR IREQ
Sbjct: 117 VLAGNKCECNPPQRAVDKDRGDKIAENFDMPFFEVSCKQNINIEEAFLTLARKIREQ 173

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028544|gb|EGI68581.1| Ras-related protein Rab-8A [Acromyrmex echinatior]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 143/170 (84%), Gaps = 7/170 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQKII+LD  P KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIINLDGTPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF HL+YWL+NI+E       NASPDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQE-------NASPDVVK 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           VLA NK D    RAV  +  Q +A+N+ +PF+EVSCK+NINI+EAFLTLA
Sbjct: 117 VLAANKCDATAHRAVDAERGQKIAENFDMPFFEVSCKENINIEEAFLTLA 166

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376692|gb|EFR23707.1| hypothetical protein AND_12415 [Anopheles darlingi]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 151/177 (85%), Gaps = 8/177 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQK+I+LD VP KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLINLDGVPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF +L+YWL+NI+E       NA+PDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNNLSYWLRNIQE-------NAAPDVVK 116

Query: 123 VLAGNKSDV-KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           VLAGNK +    QRAV  +  + +A+N+ +PF+EVSCKQNINI++AFLTLAR IREQ
Sbjct: 117 VLAGNKCECNPPQRAVDKERGEKIAENFDMPFFEVSCKQNINIEDAFLTLARKIREQ 173

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58378592|ref|XP_308884.2| AGAP006873-PA [Anopheles gambiae str. PEST] gi|55245962|gb|EAA04246.2| AGAP006873-PA [Anopheles gambiae str. PEST]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 151/177 (85%), Gaps = 8/177 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQK+I+LD VP KLQIWD
Sbjct: 4   DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLINLDGVPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGILLMYDVT+LESF +L+YWL+NI+E       NA+PDVVK
Sbjct: 64  TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNNLSYWLRNIQE-------NAAPDVVK 116

Query: 123 VLAGNKSDV-KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           VLAGNK +    QRAV  +  + +A+N+ +PF+EVSCKQNINI++AFLTLAR IREQ
Sbjct: 117 VLAGNKCECNPPQRAVDKERGEKIAENFDMPFFEVSCKQNINIEDAFLTLARKIREQ 173

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603715|gb|EHJ63893.1| hypothetical protein KGM_16919 [Danaus plexippus]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/182 (71%), Positives = 150/182 (82%), Gaps = 8/182 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D + TYK+LVLGDSNVGKTCIVHR+CDE YYD YISTIGIDFKQKII+LD VP KLQIWD
Sbjct: 4   DFSATYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLTTAYYRGAMGI+LMYD+TNLESF HL+YWL+NI+E        ASPDV+K
Sbjct: 64  TAGQERFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEY-------ASPDVIK 116

Query: 123 VLAGNKSDV-KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRL 181
           VL GNK DV +  RAV  +  Q +AD++ +PF+EVSCK NINI+EAF+TLAR IRE    
Sbjct: 117 VLVGNKCDVHENHRAVPRERGQKIADDFDMPFFEVSCKSNINIEEAFVTLARKIREYRET 176

Query: 182 QA 183
           +A
Sbjct: 177 KA 178

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
FB|FBgn0051118	213	RabX4 "RabX4" [Drosophila mela	0.896	0.774	0.745	4.5e-66
WB|WBGene00004272	211	rab-8 [Caenorhabditis elegans	0.918	0.800	0.525	6.2e-46
UNIPROTKB|G5EFC1	211	rab-8 "Rab8" [Caenorhabditis e	0.918	0.800	0.525	6.2e-46
FB|FBgn0262518	207	Rab8 "Rab8" [Drosophila melano	0.918	0.816	0.533	1e-45
ZFIN|ZDB-GENE-070424-36	210	rab8a "RAB8A, member RAS oncog	0.880	0.771	0.544	2.1e-45
UNIPROTKB|Q5F470	207	RAB8A "Ras-related protein Rab	0.880	0.782	0.544	2.7e-45
UNIPROTKB|P61007	207	RAB8A "Ras-related protein Rab	0.880	0.782	0.544	2.7e-45
UNIPROTKB|P61006	207	RAB8A "Ras-related protein Rab	0.880	0.782	0.544	2.7e-45
UNIPROTKB|F2Z5I8	207	RAB8A "Uncharacterized protein	0.880	0.782	0.544	2.7e-45
UNIPROTKB|Q4R5P1	207	RAB8A "Ras-related protein Rab	0.880	0.782	0.544	2.7e-45

FB|FBgn0051118 RabX4 "RabX4" [Drosophila melanogaster (taxid:7227)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 129/173 (74%), Positives = 149/173 (86%)

Query:     7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
             TYK+LVLGDSNVGKTCIVHR+CDE YYDTYISTIGIDFKQK+I+LD VP KLQIWDTAGQ
Sbjct:     8 TYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLINLDGVPIKLQIWDTAGQ 67

Query:    67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
             ERFRTLTTAYYRGAMGILLMYDVTNLES+ +L+YWL+NI+E       NASPDVVKVLAG
Sbjct:    68 ERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQE-------NASPDVVKVLAG 120

Query:   127 NKSDVK-TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
             NK +   TQR V  +  + +A+N+ +PF+EVSCK NINI++AFL+LAR IREQ
Sbjct:   121 NKCECSATQRMVDKERGEKIAENFDMPFFEVSCKSNINIEDAFLSLARKIREQ 173

GO:0003924 "GTPase activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

WB|WBGene00004272 rab-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 94/179 (52%), Positives = 130/179 (72%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF D+++ +++ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN  SF+++  W++NIEE       +A+ DV +++ GN
Sbjct:    69 RFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEE-------HAASDVERMIIGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR---EQTRLQA 183
             K D++ +R V     + LA  Y   F E S K N+NIDEAF TLAR I+   EQ  ++A
Sbjct:   122 KCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLARDIKSKMEQNEMRA 180

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0030538 "embryonic genitalia morphogenesis" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|G5EFC1 rab-8 "Rab8" [Caenorhabditis elegans (taxid:6239)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 94/179 (52%), Positives = 130/179 (72%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF D+++ +++ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN  SF+++  W++NIEE       +A+ DV +++ GN
Sbjct:    69 RFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEE-------HAASDVERMIIGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR---EQTRLQA 183
             K D++ +R V     + LA  Y   F E S K N+NIDEAF TLAR I+   EQ  ++A
Sbjct:   122 KCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLARDIKSKMEQNEMRA 180

GO:0006184 "GTP catabolic process" evidence=ISS

FB|FBgn0262518 Rab8 "Rab8" [Drosophila melanogaster (taxid:7227)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 95/178 (53%), Positives = 131/178 (73%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTCI+ RF ++ +  T+ISTIGIDFK + I+LD+   KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+T  +SF+++  W++NIEE       NAS DV K+L GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEE-------NASADVEKMLLGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT--RLQA 183
             K ++  +R V  +  + LA  Y + F E S K +IN++EAFLTLA  I+ +T  R++A
Sbjct:   122 KCELTDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEA 179

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

ZFIN|ZDB-GENE-070424-36 rab8a "RAB8A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/169 (54%), Positives = 123/169 (72%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-------HASADVEKMILGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             K D+  +R V     + LA  Y + F E S K NIN++ AFLTLAR I+
Sbjct:   122 KCDINEKRQVSKDRGEKLALEYGIKFMETSAKANINVENAFLTLARDIK 170

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0035845 "photoreceptor cell outer segment organization" evidence=IGI;IMP

GO:0032402 "melanosome transport" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5F470 RAB8A "Ras-related protein Rab-8A" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 92/169 (54%), Positives = 124/169 (73%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC + RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN +SF+++  W++NIEE       +ASPDV K++ GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEE-------HASPDVEKMILGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             K D   +R V  +  + LA ++ + F E S K NINI+ AF TLAR I+
Sbjct:   122 KCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIK 170

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007409 "axonogenesis" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|P61007 RAB8A "Ras-related protein Rab-8A" [Canis lupus familiaris (taxid:9615)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 92/169 (54%), Positives = 124/169 (73%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+
Sbjct:   122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|P61006 RAB8A "Ras-related protein Rab-8A" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 92/169 (54%), Positives = 124/169 (73%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+
Sbjct:   122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0048169 "regulation of long-term neuronal synaptic plasticity" evidence=IEA

GO:0051223 "regulation of protein transport" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007409 "axonogenesis" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IDA

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0042384 "cilium assembly" evidence=IDA

GO:0048210 "Golgi vesicle fusion to target membrane" evidence=IDA

UNIPROTKB|F2Z5I8 RAB8A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 92/169 (54%), Positives = 124/169 (73%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+
Sbjct:   122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

GO:0055037 "recycling endosome" evidence=IEA

GO:0048210 "Golgi vesicle fusion to target membrane" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0031513 "nonmotile primary cilium" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q4R5P1 RAB8A "Ras-related protein Rab-8A" [Macaca fascicularis (taxid:9541)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 92/169 (54%), Positives = 124/169 (73%)

Query:     8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct:     9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query:    68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct:    69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query:   128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+
Sbjct:   122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

GO:0005525 "GTP binding" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61007	RAB8A_CANFA	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
P61006	RAB8A_HUMAN	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
P41924	RYL1_YARLI	No assigned EC number	0.4806	0.9239	0.8374	yes	N/A
P61027	RAB10_MOUSE	No assigned EC number	0.5028	0.9130	0.84	no	N/A
Q5R4A3	RAB8A_PONAB	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
P61026	RAB10_HUMAN	No assigned EC number	0.5028	0.9130	0.84	no	N/A
P20790	RAB8A_DICDI	No assigned EC number	0.5	0.8858	0.7836	yes	N/A
P20791	RAB8B_DICDI	No assigned EC number	0.5058	0.8858	0.8029	no	N/A
A4FV54	RAB8A_BOVIN	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
P28186	RAE1C_ARATH	No assigned EC number	0.5263	0.8858	0.7546	yes	N/A
P35280	RAB8A_RAT	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
P17609	YPT2_SCHPO	No assigned EC number	0.5411	0.8858	0.815	yes	N/A
P55258	RAB8A_MOUSE	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
Q5F470	RAB8A_CHICK	No assigned EC number	0.5380	0.8913	0.7922	yes	N/A
Q5R5U1	RAB10_PONAB	No assigned EC number	0.5028	0.9130	0.84	no	N/A
P22127	RAB10_DIPOM	No assigned EC number	0.5028	0.9130	0.84	N/A	N/A
P24409	RAB10_CANFA	No assigned EC number	0.5028	0.9130	0.84	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-85
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-83
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-80
pfam00071	162	pfam00071, Ras, Ras family	3e-77
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-73
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-59
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	9e-59
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-58
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	5e-57
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-55
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-54
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	8e-54
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-53
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-53
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-52
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-51
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-51
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-51
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-51
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	9e-51
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-50
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-48
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-48
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-48
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-44
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-44
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-42
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-41
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-41
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	9e-41
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-40
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-39
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-37
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	7e-37
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-36
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-34
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	7e-33
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-32
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-31
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-30
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-30
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-30
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-29
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-29
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-28
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-28
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-28
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-27
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-27
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-25
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-25
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-25
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-24
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	8e-24
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-23
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-23
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-23
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	8e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-21
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	7e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-17
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-17
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-16
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	9e-16
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-15
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-15
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-13
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-13
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-13
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-11
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-11
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	7e-11
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-09
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-09
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	8e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	8e-09
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-08
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-08
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-08
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	6e-08
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-07
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-07
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-07
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	4e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	6e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	8e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-05
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	7e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	7e-05
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	2e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	3e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	7e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.001
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.003
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.003

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  248 bits (636), Expect = 2e-85
 Identities = 88/168 (52%), Positives = 122/168 (72%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI+++GDS VGK+ ++ RF D  + + Y STIG+DFK K I++D    KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T++YYRGA+G LL+YD+TN ESF++L  WLK + E        ASP+VV +L GN
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELRE-------YASPNVVIMLVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           KSD++ QR V  ++A+  A+ + LPF+E S K N N++EAF  LAR I
Sbjct: 114 KSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  241 bits (618), Expect = 8e-83
 Identities = 83/166 (50%), Positives = 116/166 (69%), Gaps = 7/166 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI+++GDS VGKT ++ RF D  + + Y STIG+DFK K I++D    KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T++YYRGA G +L+YDVTN ESF++L+ WL  +        + A P++  +L GN
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNEL-------KEYAPPNIPIILVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           KSD++ +R V T++AQ  A    L F+E S K   N+DEAF +LAR
Sbjct: 114 KSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  236 bits (604), Expect = 1e-80
 Identities = 86/171 (50%), Positives = 130/171 (76%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF ++++  ++ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TT+YYRGAMGI+L+YD+T+ +SF+++  W++NI+       ++AS DV ++L GN
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNID-------EHASEDVERMLVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V  ++ + LA  Y + F E S K NIN++EAFLTLA+ I ++
Sbjct: 117 KCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  227 bits (581), Expect = 3e-77
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 7/169 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD  VGK+ ++ RF    + + YI TIG+DF  K I++D    KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FR L   YYRGA G LL+YD+T+ +SF+++  WL+ I          A  +V  VL GNK
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRH-------ADENVPIVLVGNK 113

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
            D++ QR V T++ + LA    LPF E S K N N++EAF  LAR I +
Sbjct: 114 CDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  218 bits (558), Expect = 1e-73
 Identities = 85/170 (50%), Positives = 123/170 (72%), Gaps = 7/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+         AS +V K+L GN
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-------ASENVNKLLVGN 115

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K D+  ++ V   +A+  AD   +PF E S K   N++EAF+T+AR I++
Sbjct: 116 KCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  182 bits (464), Expect = 2e-59
 Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 7/169 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            +K+++LGDS+VGK+ IV RF    + +   STIG  F  + ++LDD   K +IWDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ER+R+L   YYRGA   +++YD+T+ ESF+    W+K ++E       +  P++V  LAG
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQE-------HGPPNIVIALAG 113

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           NK+D++++R V T++AQ  AD   L F E S K   N++E F  +AR +
Sbjct: 114 NKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  180 bits (459), Expect = 9e-59
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            KIL++GDS VGK+ ++ RF D+T+ +   STIG+DFK K + +D    KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRTLT++YYRGA G++L+YDVT  ++F +L+ WL  ++        + +PD VK+L GN
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELD------TYSTNPDAVKMLVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D K  R V  ++ Q  A  +++ F E S K  I + +AF  L   I
Sbjct: 115 KID-KENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  179 bits (457), Expect = 2e-58
 Identities = 73/167 (43%), Positives = 112/167 (67%), Gaps = 8/167 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI+++GDSNVGKTC+V RF   T+ +   +TIG+DF  K +++     KLQIWDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T +YYR A G ++ YD+T   SF+ + +W++ +E+ G       + +VV +L GN
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-------ASNVVLLLIGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPF-YEVSCKQNINIDEAFLTLAR 173
           K D++ QR V  ++A  LA++Y +    E S K++ N++EAFL +A 
Sbjct: 117 KCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  176 bits (448), Expect = 5e-57
 Identities = 72/169 (42%), Positives = 109/169 (64%), Gaps = 9/169 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFC-DETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           +KI+++GDS VGK+ ++ RF  +E   D+  STIG++F  + I +D    K QIWDTAGQ
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSK-STIGVEFATRTIQIDGKTIKAQIWDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ER+R +T+AYYRGA+G LL+YD+T   +F+++  WLK + +       +A  ++V +L G
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRD-------HADSNIVIMLVG 115

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           NKSD++  RAV T++A+  A+   L F E S     N++EAF  L   I
Sbjct: 116 NKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  172 bits (439), Expect = 2e-55
 Identities = 74/172 (43%), Positives = 109/172 (63%), Gaps = 4/172 (2%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RF++L  A+YRGA   +L+YDVTN +SF+ L+ W           +    P VV    GN
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVV---LGN 117

Query: 128 KSDVKTQRAVQTKDAQML-ADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V TK AQ       ++P++E S K+ IN+D+AF T+ARL  EQ
Sbjct: 118 KIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQ 169

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  170 bits (433), Expect = 1e-54
 Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 10/171 (5%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + +KI+V+GDSNVGKTC+ +RFC   + +   +TIG+DF+++ +++D    K+Q+WDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 66  QERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           QERFR ++   YYR    ++ +YDVTN+ SF  L  W   IEE  C  + +   +V ++L
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSW---IEE--CEQH-SLPNEVPRIL 114

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK---QNINIDEAFLTLA 172
            GNK D++ Q  V T  AQ  AD +S+P +E S K   +N +++  F+TLA
Sbjct: 115 VGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  168 bits (426), Expect = 8e-54
 Identities = 75/171 (43%), Positives = 112/171 (65%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S+VGKT  + R+ D+++   ++ST+GIDFK K +  +D   KLQIWDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGAMG +LMYD+TN ESF  +  W   I+    ++ Q        +L GN
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-------VILVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V  +  + LAD     F+E S K+NIN+ + F  L  +I ++
Sbjct: 115 KCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  167 bits (425), Expect = 1e-53
 Identities = 70/168 (41%), Positives = 102/168 (60%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K L++G +  GK+C++H+F +  +      TIG++F  +++++     KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ ESF  L  WL +   +       ASPD+V +L GN
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTL-------ASPDIVIILVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++  R V   +A   A    L F E S     N++EAFL  AR I
Sbjct: 114 KKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  167 bits (425), Expect = 4e-53
 Identities = 77/173 (44%), Positives = 115/173 (66%), Gaps = 8/173 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D +  +K+L++GDS VGK+ ++ RF D T+  +YI+TIG+DFK + ++++    KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRT+T+ YYRG  G++++YDVTN ESF ++  WL+ IE            DV K
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE--------QNCDDVCK 113

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           VL GNK+D   ++ V+T+DA   A    +  +E S K+NIN++E F  +  L+
Sbjct: 114 VLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  164 bits (416), Expect = 3e-52
 Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +++L++GDS VGKTC++ RF D  ++ ++ISTIG+DFK K I++D +  ++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R++T+T  YYR A GI L+YD+++  S+QH+  W+ +++E      Q       K+L GN
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-------KILIGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K+D + +R V  +    LA  Y + F+E S   N NI E+F  L  L+
Sbjct: 114 KADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELV 161

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  162 bits (413), Expect = 1e-51
 Identities = 59/168 (35%), Positives = 98/168 (58%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+  VGKT +V R+ +  + + + ST    F QK +++      L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+  L   YYR A G +L+YD+T+ +SFQ +  W+K ++++  N       ++  V+ GN
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN-------NISLVIVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ QR V   +A+  A +     +E S K    I+E FL+LA+ +
Sbjct: 114 KIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  163 bits (413), Expect = 2e-51
 Identities = 77/167 (46%), Positives = 111/167 (66%), Gaps = 8/167 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           +K++++GDS VGKTC++ RF D  +   ++I+T+GI F  K++ +D V  KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERFR++T AYYR A  +LL+YDVTN  SF ++  WL  I E        A  DVV +L G
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEY-------AQSDVVIMLLG 113

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           NK+D+  +R V+ +D + LA  Y +PF E S K  +N++ AF  +A+
Sbjct: 114 NKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  161 bits (410), Expect = 3e-51
 Identities = 66/171 (38%), Positives = 112/171 (65%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD+ VGK+C++ +F D+ +   +  TIG++F  ++I +D    KLQIWDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            FR++T +YYRGA G LL+YD+T  E+F HL  WL+       ++ Q+++ ++  +L GN
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE-------DARQHSNSNMTIMLIGN 117

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++++R V  ++ +  A  + L F E S K   N++EAF+  A+ I ++
Sbjct: 118 KCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  160 bits (407), Expect = 9e-51
 Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 7/165 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++ LGD +VGKT I+ RF  +T+ + Y +TIGIDF  K + +DD   +LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L  +Y R +   +++YD+TN +SF + + W   I++V          DV+ VL GN
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKW---IDDV----RDERGNDVIIVLVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           K+D+  +R V T++ +  A   +  F E S K   N+ + F  +A
Sbjct: 114 KTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIA 158

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  160 bits (407), Expect = 9e-51
 Identities = 65/167 (38%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++VLG   VGK+ +  RF    + + Y  TI  D  +K I +D     L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F  +   Y R   G +L+Y +T+ ESF+ +    + I  V          DV  VL GNK
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV------KDKEDVPIVLVGNK 113

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            D++ +R V T++ + LA+ +  PF E S K NINIDE F TL R I
Sbjct: 114 CDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  160 bits (405), Expect = 2e-50
 Identities = 68/170 (40%), Positives = 108/170 (63%), Gaps = 7/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD  VGK+C++H+F ++ +      TIG++F  +II+++    KLQIWDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR +T +YYRGA G L++YD+T   ++ HL+ WL        ++    +P+ V  L GN
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLT-------DARNLTNPNTVIFLIGN 115

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K+D++ QR V  ++A+  AD   L F E S K   N+++AFL  A+ I +
Sbjct: 116 KADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  154 bits (392), Expect = 2e-48
 Identities = 75/183 (40%), Positives = 114/183 (62%), Gaps = 22/183 (12%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII-----DLDDVPTK-----L 58
           K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +       D    K     L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 59  QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA-- 116
           Q+WDTAGQERFR+LTTA++R AMG LLM+D+T+ +SF ++  W+  ++        +A  
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQ-------AHAYC 118

Query: 117 -SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            +PD+  VL GNK+D+  QR V  + A+ LAD Y +P++E S     N+++A  TL  LI
Sbjct: 119 ENPDI--VLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 176

Query: 176 REQ 178
            ++
Sbjct: 177 MKR 179

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  155 bits (394), Expect = 3e-48
 Identities = 70/168 (41%), Positives = 111/168 (66%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD+ VGK+C++ +F D+ +   +  TIG++F  ++I +D+ P KLQIWDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            FR++T +YYRGA G LL+YD+T  E+F HL  WL+       ++ Q+A+ ++  +L GN
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-------DARQHANANMTIMLIGN 119

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+  +RAV T++ +  A  + L F E S K   N++EAF+  A  I
Sbjct: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  155 bits (393), Expect = 4e-48
 Identities = 64/175 (36%), Positives = 115/175 (65%), Gaps = 9/175 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQ 66
           ++++V+GDS VGK+ ++ RF +  + +    T+G+DF  ++I+++  V  KLQ+WDTAGQ
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEE-VGCNSNQNASPDVVKVLA 125
           ERFR++T +YYR ++G+LL++D+TN ESF+H++ WL+     +  +         V +L 
Sbjct: 63  ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHR-------PVFILV 115

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
           G+K D+++QR V  ++A+ LA +  + + E S +   N++EAF  L + I E+ +
Sbjct: 116 GHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIK 170

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  144 bits (364), Expect = 3e-44
 Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 8/176 (4%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M D +  +KI+++G++ VGKTC+V RF    +     +TIG+DF  K +++     KLQI
Sbjct: 1   MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQI 60

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR++T +YYR A  ++L YD+T  ESF+ L  WL+ IE       Q A+  V
Sbjct: 61  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE-------QYANNKV 113

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA-RLI 175
           + +L GNK D+  +R V  + A+  +D   + + E S K++ N+++ FL LA RLI
Sbjct: 114 ITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  145 bits (367), Expect = 3e-44
 Identities = 66/164 (40%), Positives = 106/164 (64%), Gaps = 7/164 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI+++GDS VGK+ I+ RF    +     STIG++F  + + ++    K QIWDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+T  ++F ++  WL+ + +       +A  ++V ++AGN
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRD-------HADSNIVIMMAGN 125

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD+   R+V  +D Q LA+   L F E S  +  N+++AF T+
Sbjct: 126 KSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  140 bits (355), Expect = 1e-42
 Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 8/164 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +++++G   VGKT ++ RF D+T+ +   ST+G+DFK K ++L     +LQIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F ++T+AYYR A GI+L+YD+T  E+F  L  W+K I++        AS D   +L GNK
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-------ASEDAELLLVGNK 114

Query: 129 SDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTL 171
            D +T R +  +  +  A   + + F E S K N N+DE FL L
Sbjct: 115 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  138 bits (350), Expect = 9e-42
 Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 6/171 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQ 66
           +K+LV+GD  VGKT I+ R+    +   Y +TIG+DF  K+I+ D     +LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF  +T  YY+GA+G ++++DVT   +F+ +  W  +++      N    P    +L  
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP---ALLLA 117

Query: 127 NKSDVKTQRAVQTKDA--QMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           NK D+K +R  +  +   Q   +N  + ++E S K+NINI+EA   L + I
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  138 bits (349), Expect = 1e-41
 Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 8/172 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           ++KIL++GDS VGK+ ++  F   +  D    TIG+DFK K + +     KL IWDTAGQ
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQ 72

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLA 125
           ERFRTLT++YYR A GI+L+YDVT  E+F +L + W K +E    N       D VK+L 
Sbjct: 73  ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ------DCVKMLV 126

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           GNK D +++R V  ++   LA  +   F E S K   N+++ F  LA  I E
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178

Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  136 bits (344), Expect = 4e-41
 Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + D Y  TI  D  +K I++D     L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            F  +   Y R   G LL+Y +T+ +SF+ +  + + I  V          DV  VL GN
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRV------KDRDDVPIVLVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++++R V T++ + LA  +  PF E S K+ +N+DEAF  L R IR++
Sbjct: 114 KCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  134 bits (341), Expect = 9e-41
 Identities = 65/170 (38%), Positives = 92/170 (54%), Gaps = 7/170 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            YK++VLG   VGK+ +  +F    + D Y  TI  D  +K I++D     L I DTAGQ
Sbjct: 2   EYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQ 60

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +   Y R   G LL+Y +T+ +SF+ +  + + I  V          DV  VL G
Sbjct: 61  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRV------KDRDDVPIVLVG 114

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           NK D++ +R V T++ + LA  +  PF E S K+ IN+DEAF  L R IR
Sbjct: 115 NKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIR 164

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  132 bits (335), Expect = 6e-40
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 10/166 (6%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT--KLQIWDTAGQ 66
           K++V+G+ NVGK+ ++ RF    +   Y  TIG+DF +K I L       +L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +T AYYRGA   +L++  T+ ESF+ +  W + +E   C        D+  VL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE-CG-------DIPMVLVQ 113

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
            K D+  Q  +  ++A+ LA    LP +  S K + N+ E F  LA
Sbjct: 114 TKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  131 bits (331), Expect = 5e-39
 Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K L++GDS+VGK  I+    D +    Y   +GID+K   I LD    KLQ+WDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F T+  +Y RGA GI+L+YD+TN  SF  ++ W+K I+E         +P V K+L GN+
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE--------HAPGVPKILVGNR 119

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
             +  +R V T+ AQ  A+   + F+EVS   N NI E+F  LAR++
Sbjct: 120 LHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  127 bits (321), Expect = 3e-37
 Identities = 62/189 (32%), Positives = 89/189 (47%), Gaps = 23/189 (12%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            +KI+VLGD  VGKT +++R   + + + Y  TIG     K I+      KLQ+WDTAGQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +R+L   YYRGA GIL++YD T  ES        +  EE      + A  DV  +L G
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESS------DELTEEWLEELRELAPDDVPILLVG 118

Query: 127 NKSDVKTQRAVQTKDAQMLAD---------------NYSLPFYEVSCKQ--NINIDEAFL 169
           NK D+  +++   +    L                   +    E S K     N++E F 
Sbjct: 119 NKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK 178

Query: 170 TLARLIREQ 178
            L R + E+
Sbjct: 179 ELLRKLLEE 187

Length = 219

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  125 bits (315), Expect = 7e-37
 Identities = 50/163 (30%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++ +G+S VGK+CI+ R+C+  +   Y+ TIGID+  K + + +   ++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  +   +Y+   G+LL+YDVT+ +SF+ L+ WLK + +     + N    VV V+  NK
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEM-KQEGGPHGNMENIVV-VVCANK 119

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
            D+   RAV   + ++ A++    ++E S      ++E F TL
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  124 bits (312), Expect = 2e-36
 Identities = 62/171 (36%), Positives = 103/171 (60%), Gaps = 8/171 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++V+GD +VGKTC+++RFC + +   Y +TIG+DF+ +  ++  VP  LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F+ + + YYRGA  I++++D+T++ S +H   WL++  +      +N    V+  L G K
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK------ENDPSSVLLFLVGTK 115

Query: 129 SDVKT--QRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
            D+ +  Q A+  +DA  LA      ++ VS     N+ + F  +A L  E
Sbjct: 116 KDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFE 166

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  117 bits (294), Expect = 8e-34
 Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
            TYK++V+G   VGK+ +  +F    +   Y  TI  D   K  ++D    +L I DTAG
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAG 59

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE F  +   Y R   G LL++ VT+  SF+ ++ +   I  V    +++  P    +L 
Sbjct: 60  QEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRV---KDRDEFP---MILV 113

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           GNK+D++ QR V  ++ Q LA    +P+ E S K  +N+D+AF  L R+IR
Sbjct: 114 GNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  115 bits (289), Expect = 7e-33
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 5/166 (3%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGD  VGK+ +++R+    +      TIG++F  K +++D     LQIWDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FR+L T +YRG+   LL + V + +SFQ+L+ W K            + P V+    GNK
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI---LGNK 123

Query: 129 SDVKTQRAVQTKDAQM-LADNYSLPFYEVSCKQNINIDEAFLTLAR 173
            D+  +R V T++AQ    DN   P++E S K   N+  AF    R
Sbjct: 124 IDI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 168

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  113 bits (283), Expect = 3e-32
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F   T+ + Y  TI  DF +K I++D  P+ L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F ++   Y +   G +++Y + N ++FQ +      I  V           V  +L GN
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV------KGYEKVPIILVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D++++R V + + + LA+ +  PF E S K    ++E F  + R
Sbjct: 115 KVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  114 bits (286), Expect = 5e-32
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQ 66
            KI+VLGD   GKT ++ RF  E +  +Y  TIG+DF  + I L   +   LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           +    +   Y  GA  + L+YD+TN +SF++L  WL  +++V    N+ +      VL G
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKV----NEESETKPKMVLVG 116

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           NK+D++  R V  +     A    +    VS K     D  FL   R+  E
Sbjct: 117 NKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTG---DRVFLCFQRIAAE 164

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  112 bits (281), Expect = 1e-31
 Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 5/170 (2%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++VLGD  VGKT +  + C   + +TY  TI   ++++++ +D  P  L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L   + R   G +L+Y +T+  +F+ +  + + I+ V       ++ DV  ++ GNK
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRV----KDESAADVPIMIVGNK 115

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            D   +R V T++   LA      F E S K N+N++ AF TL R +R+Q
Sbjct: 116 CDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  108 bits (272), Expect = 2e-30
 Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + D Y  TI  D  +K I++D     L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G  L+Y +T  +SF  L    + I  V        + DV  +L GN
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRV------KDTEDVPMILVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V  ++ Q LA  + + PF E S K  IN+DE F  L R I
Sbjct: 115 KCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  109 bits (273), Expect = 2e-30
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           K+++LG  +VGKT +V R+    +    Y +TIG  F  K + + +    L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+  ++  YYRGA   ++ YD+T+  SF+   +W+K +        QN        L G 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL--------QNLEEHCKIYLCGT 113

Query: 128 KSDV----KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           KSD+    ++ R V   D Q  AD      +E S K   N+DE F  +A
Sbjct: 114 KSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  107 bits (270), Expect = 3e-30
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + + +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRV------KDSDDVPMVLVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           K D+   R V T+  Q LA +Y +P+ E S K    ++EAF TL R IR
Sbjct: 115 KCDLAA-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  108 bits (270), Expect = 5e-30
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YKI++LG   VGK+ +  +F   ++ D +  TI   +K +   +D+ P  L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            F  +   Y R   G ++ Y VT+  SFQ  + + + I  V        + D+  VL GN
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRV------RLTEDIPLVLVGN 115

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ QR V T++ + LA  ++ PF+E S      ID+AF  L R IR +
Sbjct: 116 KVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  108 bits (271), Expect = 1e-29
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
             D    +K++++GD  VGKT  V R     +   YI T+G++        +  P    +
Sbjct: 3   QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNV 62

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQE+F  L   YY      ++M+DVT+  +++++  W ++I  V  N        +
Sbjct: 63  WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN--------I 114

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
             VL GNK DVK  R V+ +         +L +Y++S K N N ++ FL LAR +     
Sbjct: 115 PIVLVGNKVDVK-DRQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPN 172

Query: 181 LQ 182
           L 
Sbjct: 173 LV 174

Length = 215

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  106 bits (265), Expect = 2e-29
 Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 10/170 (5%)

Query: 9   KILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDF--KQKIIDLDDVPTKLQIWDTA 64
           +  V+GD  VGK+ +V  F  +  T+   Y  T G D   K   +       +L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE F  +    +     + ++YDVTN  SF + + W   I  V  +S+   +P V   L
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW---INRVRTHSHGLHTPGV---L 115

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
            GNK D+  +R V    AQ LA   +L FYE S K+ +  +  FL+LAR 
Sbjct: 116 VGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  104 bits (261), Expect = 1e-28
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +F    + D Y  TI  D  +K   +D+    L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDTAGQE 64

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L +Y +T+  SF+ +  + + I  V           V  +L GN
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDR------VPMILVGN 118

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
           K D+ ++R V T + Q LA ++ +PF E S KQ +N+DEAF  L R IR+  +
Sbjct: 119 KCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK 171

Length = 189

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  103 bits (259), Expect = 2e-28
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 8/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YKI+VLG   VGK+ +  +F    + ++Y  TI  D  +K +++D     L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G LL+Y VT+  S   L    + +  +  + N      V  VL GN
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDN------VPMVLVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINIDEAFLTLARLIR 176
           K+D++  R V  +D   L+  +   PFYE S ++  N+DE F+ L R I 
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  102 bits (256), Expect = 4e-28
 Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 20/172 (11%)

Query: 11  LVLGDSNVGKTCIVHRFCDETYY---DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +V+G   VGK+ +++           D   +T   D   K +D   V  KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV--KLVLVDTPGLD 58

Query: 68  RF-----RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
            F       L     RGA  ILL+ D T+ ES +     +                 +  
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR---------KEGIPI 109

Query: 123 VLAGNKSDVKTQRAV-QTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           +L GNK D+  +R V +    + LA    +P +EVS K    +DE F  L  
Sbjct: 110 ILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  102 bits (256), Expect = 8e-28
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI VLG  +VGK+ +  +F +  + ++Y  TI   F  KII        L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L   Y  G  G +L+Y VT+ +SF+     +K I +   +     S  V  VL GNK
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFE----VVKVIYDKILDMLGKES--VPIVLVGNK 115

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           SD+  +R V  ++ + LA+++   F E S K+N N++EAF  L   I
Sbjct: 116 SDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  101 bits (252), Expect = 2e-27
 Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 7/143 (4%)

Query: 30  ETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV 89
           +T+ + Y STIGIDF  K + LD+ P +LQ+WDTAGQERFR+L  +Y R +   +++YD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 90  TNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY 149
           TN +SF++   W+++I             DV+  L GNK+D+   R V  ++    A  Y
Sbjct: 63  TNRQSFENTTKWIQDIL-------NERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEY 115

Query: 150 SLPFYEVSCKQNINIDEAFLTLA 172
           +  F+E S K   NI   F  +A
Sbjct: 116 NTMFHETSAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  100 bits (250), Expect = 4e-27
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++        +    +  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY      ++M+DVT+  +++++  W +++  V  N           VL GN
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI--------VLCGN 112

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+K  R V+ K         +L +YE+S K N N ++ FL LAR +
Sbjct: 113 KVDIK-DRKVKPKQITFHR-KKNLQYYEISAKSNYNFEKPFLWLARKL 158

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 96.0 bits (239), Expect = 2e-25
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + + Y  TI  D  +K +++D     L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G +L+Y +T   +F  L    + I  V        + DV  +L GN
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V  +  Q LA  +   F E S K  IN++E F  L R I
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 96.0 bits (239), Expect = 2e-25
 Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 7/169 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    +L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQLNILDTAGQE 59

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G LL++ +T++ESF  L  + + I  V          +V  +L GN
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV------KEDDNVPLLLVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           K D++ +R V  ++A  LA+ + + + E S K   N+D+ F  L R IR
Sbjct: 114 KCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 94.7 bits (236), Expect = 4e-25
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 11/165 (6%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
             KI+++GD NVGK+ +++R        T Y      ++   +I+ D    K  + DTAG
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNL-ESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
           QE +  +   YYR     L ++D+  L    +  L    K I          A   V  +
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHH-------AESGVPII 113

Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
           L GNK D++    ++T  A + A     P   +S +   NID AF
Sbjct: 114 LVGNKIDLR-DAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 95.4 bits (237), Expect = 1e-24
 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 45/200 (22%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGD NVGKT ++HR+ +  + DT +ST+G  F  K       P  + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLKQWG----PYNISIWDTAGREQ 56

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F  L + Y RGA  ++L YDV+N++S + L      + +        A+ D +  + GNK
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-------ANEDCLFAVVGNK 109

Query: 129 SDV-------------------KTQRAVQTKDA----------QMLADNYSL----PFYE 155
            D+                   + QR V  +DA          +ML ++ S       +E
Sbjct: 110 LDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFE 169

Query: 156 VSCKQNINIDEAFLTLARLI 175
            S K   N+DE F  L  L+
Sbjct: 170 TSAKTGYNVDELFEYLFNLV 189

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 93.7 bits (233), Expect = 8e-24
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y+++VLG S VGKT IV RF    + + Y  TI  DF +K+  +     +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 68  RF---RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV-GCNSNQNAS-PDVVK 122
            F   R L+     G +  +L++ + N ESF+ +    + I E   C  N+      +  
Sbjct: 60  PFPAMRRLS--ILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM 116

Query: 123 VLAGNKSDVKTQRAVQTKDA-QMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
           V+ GNK+D    R VQ  +  Q++  + +  ++EVS K+N N+DE F  L  L
Sbjct: 117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSL 169

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 91.0 bits (226), Expect = 1e-23
 Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y+++V G   VGK+ +V RF   T+ ++YI TI   ++Q +I        LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCSKSICTLQITDTTGSH 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +           +L+Y +T+ +S + L    K I E+ C    N    +  +L GN
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEEL----KPIYELICEIKGNNLEKIPIMLVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           K D    R V + +   LA  ++  F E S K N N+ E F  L
Sbjct: 117 KCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 91.0 bits (226), Expect = 4e-23
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 1   MADCNQ------TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV 54
           MA  NQ      ++K++++GD   GKT  V R     +   Y  TIG++        +  
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 55  PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ 114
             +   WDTAGQE+F  L   YY      ++M+DVT   +++++  W +++  V C    
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CE--- 116

Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
               ++  VL GNK DVK  R V+ K         +L +YE+S K N N ++ FL LAR
Sbjct: 117 ----NIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169

Length = 219

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 89.1 bits (222), Expect = 7e-23
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 22/179 (12%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+V+GD  VGKTC++  +    +   Y+ T+  D     + +D     L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    Y      LL + V +  SF+++   W   I        ++  P+V  +L G 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEI--------KHYCPNVPIILVGT 112

Query: 128 KSD-----------VKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARL 174
           K D            K Q+ +  ++ + LA    ++ + E S      + E F    R 
Sbjct: 113 KIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 86.5 bits (214), Expect = 8e-22
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI++LGDS VGK+ +V RF  + Y    +ST  +   +     +     +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F+T+  +YY  A   +L++DVT   ++++L+ W + +        +   P++  ++  NK
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL--------REYRPEIPCIVVANK 113

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
            D+      Q K     A+ ++LP Y VS     N+ + F
Sbjct: 114 IDLDP-SVTQKKFN--FAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 87.0 bits (215), Expect = 1e-21
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 13  LGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL 72
           +GD   GKT  V R     +   Y++T+G++    +   +  P +  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 73  TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132
              YY      ++M+DVT   +++++  W +++  V  N        +  VL GNK DVK
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN--------IPIVLCGNKVDVK 112

Query: 133 TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
             R V+ K         +L +Y++S K N N ++ FL LAR
Sbjct: 113 -DRKVKAKSI-TFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 83.9 bits (208), Expect = 7e-21
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI VLG S VGK+ +  RF  + +   Y   +   + +++  +D     L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVT-IDGEQVSLEIQDTPGQQQ 59

Query: 69  FRT--LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
                      R A G +L+Y +T+  SF  ++  L+ I E+     +    ++  +L G
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREI-----KKRDGEIPVILVG 114

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVS-CKQNINIDEAFLTLARLIRE 177
           NK+D+   R V T++ Q LA      F+EVS  +  + +   F  L R +R 
Sbjct: 115 NKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.9 bits (187), Expect = 1e-17
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI +LGD+ +GKT ++ ++ +  + + YI T+G++F +K I +        IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F  +     + A+ IL M+D+T   +   +  W +         N+ A P    +L G K
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQAR----GFNKTAIP----ILVGTK 113

Query: 129 SDVKTQRAVQ-----TKDAQMLADNYSLPFYEVSCKQNINIDEAF-LTLARL 174
            D+      +     TK A+  A     P    S   +IN+ + F   LA++
Sbjct: 114 YDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 74.2 bits (183), Expect = 4e-17
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL--DDVPTKLQIWDTAGQE 67
           ++V+GD  VGKTC++  +    + + Y+ T+   F+    D+  D  P +L +WDTAGQE
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV---FENYSADVEVDGKPVELGLWDTAGQE 57

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
            +  L    Y      L+ + V +  SF++    W     EV     ++  P+V  +L G
Sbjct: 58  DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKW---YPEV-----KHFCPNVPIILVG 109

Query: 127 NKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAF 168
            K D+            K Q  V  +  Q LA    ++ + E S      + E F
Sbjct: 110 TKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 72.8 bits (179), Expect = 1e-16
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI---DFKQKIIDLDDVPTKLQIWDTAG 65
           K++++G   VGKT +  +   E +     ST GI   D+K    +   +  +L +WD  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKI--RLNVWDFGG 60

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +      +       LL++D+   +    + YWL+ I+     +    SP    +L 
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIK-----AFGGVSP---VILV 112

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166
           G   D      +  K             + VSCK    I E
Sbjct: 113 GTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 70.5 bits (173), Expect = 3e-16
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++V+GD   GK+ ++ +     +    +   G       +++D     L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLN---YWLKNIEEVGCNSNQNASPDVVKVLA 125
            +     + + A  ILL+YD+T+ ES   ++    WL N+ ++G             +L 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIP--------VILV 112

Query: 126 GNK 128
           GNK
Sbjct: 113 GNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 70.9 bits (174), Expect = 9e-16
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +++GD  VGKT ++  +    Y   Y+ T   D    ++ +D  P +LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEE---------VGCNSNQNASP 118
           F  L    Y      LL + V N  SFQ++   W+  I +         VG  ++     
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 119 DVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAF 168
           +V+  LA        ++ V    A+ LA+   +  + E S     N+ E F
Sbjct: 121 NVLIQLARYG-----EKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 26/176 (14%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK---LQIWDTAG 65
           KI+V+GD   GKTC++  +   ++ + Y+ T+   F+  +  L     K   L +WDTAG
Sbjct: 5   KIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDTAG 61

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    Y     IL+ Y V N  S         N+E+       +  P    VL 
Sbjct: 62  QEDYDRLRPLSYPDVDVILICYSVDNPTSLD-------NVEDKWYPEVNHFCPGTPIVLV 114

Query: 126 GNKSDVKTQRA------------VQTKDAQMLADNY-SLPFYEVSCKQNINIDEAF 168
           G K+D++  +             V  +  + +A +  ++ + E S K   N+DE F
Sbjct: 115 GLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 23/177 (12%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL--DDVPTKLQIWDTAGQ 66
           K++VLGD   GKT +++ F    +   Y  T+   F+  I D+  D +  +L +WDTAGQ
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV---FENYIHDIFVDGLAVELSLWDTAGQ 58

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLA 125
           E F  L +  Y     I+L + V N +S +++ + WL  I    C       P V  VL 
Sbjct: 59  EEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRH-HC-------PGVKLVLV 110

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLP---------FYEVSCKQNINIDEAFLTLAR 173
             K D++  R  + +    ++    L          + E S K N  ++EAF   AR
Sbjct: 111 ALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 8/174 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +++ +G + VGKT ++ RF  +T+   +  T+  +   K  ++  V   + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F  +     +      L+Y V + ESF+ +    + I EV     ++    +V V  GNK
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEV----KEDKFVPIVVV--GNK 113

Query: 129 SDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCKQNINIDEAFLTLARLIREQTRL 181
            D   +R V+  DA    + +++  F E S K N N+ E F  L +     + L
Sbjct: 114 IDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWL 167

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y++++LGDS VGK+ + + F    Y D+     G D  ++ + +D     L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQNASPDVVKVL 124
               L  +  +     +++Y VT+  SF+    L   L+   +         + D+  +L
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQ---------AEDIPIIL 111

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
            GNKSD+   R V  ++ +  A  +   F E S     N+DE F  + R +R
Sbjct: 112 VGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVR 163

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 27/181 (14%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 59

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLA 125
           E +  L    Y     IL+ + + + +S +++   W   ++   C       P+V  +L 
Sbjct: 60  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-C-------PNVPIILV 111

Query: 126 GNKSDVKT------------QRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLA 172
           GNK D++             Q  V+ ++ + +A+      Y E S K    + E F    
Sbjct: 112 GNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMAT 171

Query: 173 R 173
           R
Sbjct: 172 R 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 63.3 bits (154), Expect = 9e-13
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 23/173 (13%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID--LDDVPTKLQIWDTAGQ 66
           K++++GD   GKT +++ F    + + Y  T+   F+  + D  +D  P +L +WDTAGQ
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV---FENYVTDCRVDGKPVQLALWDTAGQ 59

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y  A  IL+ + +   +S +  N   K IEEV     +   P+V  +L G
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLE--NVRTKWIEEV-----RRYCPNVPVILVG 112

Query: 127 NKSDVK----------TQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAF 168
            K D++          T   V  + A+++A       Y E S      +D+ F
Sbjct: 113 LKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 15/140 (10%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K + +GD  VGKTC++  +   T+   Y+ T+  +F   ++ +D     L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L    YRGA   LL + + +  S++  N   K I E+     ++ +P V  VL G K
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYE--NVLKKWIPEL-----RHYAPGVPIVLVGTK 114

Query: 129 SDVKTQRAVQTKDAQMLADN 148
            D++        D Q  AD+
Sbjct: 115 LDLR-------DDKQFFADH 127

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 22/167 (13%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL+LG    GKT I+++        T I TIG  F  + ++  +V  K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEYKNV--KFTVWDVGGQDK 55

Query: 69  FRTLTTAYYRGAMGILLMYDVTN----LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
            R L   YY    G++ + D ++     E+   L+  L   E  G           + +L
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGA---------PLLIL 106

Query: 125 AGNKSDVKTQRAVQT-KDAQMLADNYSLPFYEVSC--KQNINIDEAF 168
           A NK D+          +   L       ++   C       +DE  
Sbjct: 107 A-NKQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 25/174 (14%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK------LQIWD 62
           K+LVLGDS VGK+ +VH  C          T+G     +     +  T       +++WD
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGE-GTPEEKTFYVELWD 60

Query: 63  TAGQ----ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVG--------- 109
             G     E  ++    +Y    GI+ ++D+TN +S Q+L  W                 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 110 ---CNSNQNASPDVVKVLAGNKSDV--KTQRAVQTKDAQMLADNYSLPFYEVSC 158
               +S Q A   V  ++ G K D   + +R         L+++++     + C
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDFNAEEINLDC 174

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 57.8 bits (139), Expect = 7e-11
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+V+GDS  GKT ++H F  + + + Y+ T+  ++     ++D    +L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 65

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +L+ +D++  E+    L  W   I+E          P+   +L G 
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGC 117

Query: 128 KSDVKT 133
           KSD++T
Sbjct: 118 KSDLRT 123

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q+ K +V+GD  VGKTC++  +    +   YI T+  ++  +   +D     L +WDTAG
Sbjct: 2   QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAG 60

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L T  Y      ++ + + +  S++++ +  K   EV      +  P+V  +L 
Sbjct: 61  QEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRH--KWHPEVC-----HHCPNVPILLV 113

Query: 126 GNKSDVKTQRAVQTK 140
           G K D++       K
Sbjct: 114 GTKKDLRNDADTLKK 128

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           I ++G  N GKT +V+      + +  I T+G + ++  +   +V  K  +WD  GQ RF
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRK--VTKGNVTIK--VWDLGGQPRF 57

Query: 70  RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA-GNK 128
           R++   Y RG   I+ + D  + E  +     L ++ E         S + + +L  GNK
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLE-------KPSLEGIPLLVLGNK 110

Query: 129 SDVKTQRAVQTKDAQM----LADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           +D+    +V     QM    + D   +  Y +S K+  NID     L  LI+
Sbjct: 111 NDLPGALSVDELIEQMNLKSITDR-EVSCYSISAKEKTNIDI---VLDWLIK 158

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 23/180 (12%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD----- 62
            ++ VLG   VGKT IV +F  + + + YI T      +  + L      L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 63  ----TAGQE----RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ 114
               TAGQE    RFR L     R +   +L+YD+ + +SF ++    + I E    +  
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILE----TRP 111

Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
             + +   V+ GNK D +  R       + ++  ++   + E S K N +I   F  L  
Sbjct: 112 AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 52.7 bits (126), Expect = 7e-09
 Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+V+GD+  GKT ++H F  + Y ++Y+ T+  ++     ++D    +L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTAS-FEIDKHRIELNMWDTSGSSY 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  +    Y  +  +L+ +D++  E+       L ++ +      Q   P+   VL G K
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPET-------LDSVLKKWQGETQEFCPNAKLVLVGCK 114

Query: 129 SDVKT 133
            D++T
Sbjct: 115 LDMRT 119

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYIS------------TIGIDFKQKIIDLDDVPT 56
           KI+V+G    GKT  V    D+    T               T+ +DF   I   +D  T
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF-GSIELDED--T 68

Query: 57  KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
            + ++ T GQERF+ +     RGA+G +++ D +   +F       + I+ +   +++N 
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA----EEIIDFL---TSRNP 121

Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCKQNINIDEAFLTL 171
            P VV   A NK D+      + K  + L     S+P  E+   +     +    L
Sbjct: 122 IPVVV---AINKQDLFDALPPE-KIREALKLELLSVPVIEIDATEGEGARDQLDVL 173

Length = 187

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 52.1 bits (125), Expect = 8e-09
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L    Y      L+ + + +  SF+  N   K   EV     ++  P+   +L G K
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFE--NVRAKWYPEV-----RHHCPNTPIILVGTK 114

Query: 129 SDVKTQRAVQTK 140
            D++  +    K
Sbjct: 115 LDLRDDKDTIEK 126

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+++GDS  GKT ++  F  +++ + Y+ T+  ++     ++D    +L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +L+ +D++  E+    L  W   + E          P+   +L G 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC--------PNTPVLLVGC 113

Query: 128 KSDVKTQRAVQTKDAQ 143
           KSD++T  +  T+ + 
Sbjct: 114 KSDLRTDLSTLTELSN 129

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +V+GD  VGKTC++  + ++ + + Y+ T+  D     + +      L ++DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L    Y      L+ + V N  SFQ       N++E      +  +P+V  +L G +
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQ-------NVKEEWVPELKEYAPNVPYLLIGTQ 113

Query: 129 SDVK 132
            D++
Sbjct: 114 IDLR 117

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG  N GKT I+++        T I TIG  F  + +   +V  K  +WD  
Sbjct: 12  NKEMRILILGLDNAGKTTILYKLKLGE-IVTTIPTIG--FNVETVTYKNV--KFTVWDVG 66

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQE  R L   Y+     ++ + D  + +      + L+  L N EE       +A    
Sbjct: 67  GQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALL-NEEE-----LADA---P 117

Query: 121 VKVLAGNKSDV 131
           + +LA NK D+
Sbjct: 118 LLILA-NKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 37/194 (19%)

Query: 6   QTYKILVLGDSNVGKT-CIVHRFCDETYYD-----TYISTI-GID--------FKQKIID 50
           +T K +V+GD+ VGKT  I  R C++T        T++ T+  ID         ++    
Sbjct: 1   ETIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV 60

Query: 51  LDDVPTKLQIWDTAG----QERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNI 105
           +D V   L++WDT G      RF     AY R  + +LL + + +  S +++   W   I
Sbjct: 61  VDGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEI 114

Query: 106 EE---------VGCNSN-QNASPD-VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY 154
                      VGC  + + A  D V +        +K    +  +  + +A    +P+Y
Sbjct: 115 RHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 155 EVSCKQNINIDEAF 168
           E S      + + F
Sbjct: 175 ETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKT ++     + Y +TY+ T+  ++    ++ ++   +L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 73

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +LL +D++  E F   L  W   I +          P    +L G 
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDY--------CPSTRILLIGC 125

Query: 128 KSDVKT 133
           K+D++T
Sbjct: 126 KTDLRT 131

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           T K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAGQ
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 59

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y      L+ + V +  SF       +N++E       +  P    +L G
Sbjct: 60  EDYDRLRPLSYPQTDVFLVCFSVVSPSSF-------ENVKEKWVPEITHHCPKTPFLLVG 112

Query: 127 NKSDVKTQRAVQTKDAQ 143
            + D++   +   K A+
Sbjct: 113 TQIDLRDDPSTIEKLAK 129

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 37/176 (21%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTY-----ISTIGIDFKQKIIDLDDVPTKLQIWDT 63
           +I+++GD  VGK+ ++     E + +         TI  D        + VPT   I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTT--IVDT 56

Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVK 122
           + + + R    A  R A  I L+Y V    + + +   WL  I            P    
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI-----RRLGVKVP---I 108

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY----------EVSCKQNINIDEAF 168
           +L GNKSD      ++   +Q   +   LP            E S K  IN+ E F
Sbjct: 109 ILVGNKSD------LRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 19/146 (13%)

Query: 4   CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK------ 57
           C Q  ++LV+GDS VGK+ +VH     +       TIG     K I      +       
Sbjct: 19  CGQV-RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKG 77

Query: 58  -------LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGC 110
                  +++WD +G ER++   + +Y    G++ ++D++   +   L  W   +   G 
Sbjct: 78  DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGT 137

Query: 111 NSNQNAS--PDVVKV---LAGNKSDV 131
            S    S  P  + V   + GNK+D+
Sbjct: 138 FSAPLGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK---LQIWD 62
           Q+  I++LG  + GKT +++R     + +T + T G  F  + I +     K      WD
Sbjct: 2   QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKG--FNTEKIKVSLGNAKGVTFHFWD 58

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
             GQE+ R L  +Y R   GI+ + D  ++E  +     L  I +   + NQ      V 
Sbjct: 59  VGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITK--FSENQGVP---VL 113

Query: 123 VLAGNKSDVKTQRAV 137
           VLA NK D+     V
Sbjct: 114 VLA-NKQDLPNALPV 127

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            + YK++++G  N GKT I+++F       T   TIG + ++ +        +  +WD  
Sbjct: 13  RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSNVEEIVYK----NIRFLMWDIG 67

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE  R+    YY     ++L+ D T+ E        L  +      ++++    V+ VL
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKML-----AHEDLRKAVLLVL 122

Query: 125 AGNKSDVK 132
           A NK D+K
Sbjct: 123 A-NKQDLK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 5  NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
          N+  +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  
Sbjct: 7  NKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVG--FNVETVTYKNV--KFNVWDVG 61

Query: 65 GQERFRTLTTAYYRGAMGILLMYD 88
          GQ++ R L   YY G  G++ + D
Sbjct: 62 GQDKIRPLWRHYYTGTQGLIFVVD 85

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 5  NQTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
          N+  +IL++G    GKT I+++    E+   T I TIG  F  + +   ++     +WD 
Sbjct: 11 NKEMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIG--FNVETVTYKNI--SFTVWDV 64

Query: 64 AGQERFRTLTTAYYRGAMGILLMYD 88
           GQ++ R L   YY    G++ + D
Sbjct: 65 GGQDKIRPLWRHYYTNTQGLIFVVD 89

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           ++L+LG  + GK+ ++++        T I T+G  F  +++ L+     L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEK-HLSLTVWDVGGQEK 56

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
            RT+   Y     G++ + D ++      L+   K ++ +  N +    P  V +LA NK
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSD---EARLDESQKELKHILKNEHIKGVP--VVLLA-NK 110

Query: 129 SDV 131
            D+
Sbjct: 111 QDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 5  NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           Q  +IL+LG  N GKT I+ +   E        T G  F  K +  D    KL +WD  
Sbjct: 13 RQEVRILLLGLDNAGKTTILKQLASEDISHIT-PTQG--FNIKNVQADGF--KLNVWDIG 67

Query: 65 GQERFRTLTTAYY 77
          GQ + R     Y+
Sbjct: 68 GQRKIRPYWRNYF 80

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 29/137 (21%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-------- 56
            +  KI+ LG  N GKT ++H   D+     ++ T+              PT        
Sbjct: 17  KKEAKIVFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH-------------PTSEELTIGN 62

Query: 57  -KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
            K   +D  G E+ R +   Y+    GI+ + D  + E FQ     L ++       N  
Sbjct: 63  VKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSL------LNDE 116

Query: 116 ASPDVVKVLAGNKSDVK 132
              +V  ++ GNK D  
Sbjct: 117 ELANVPILILGNKIDKP 133

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 9  KILVLGDSNVGKTCIVHRFCDETYYDTYISTIG--IDFKQKIIDLDDVPTKLQIWDTAGQ 66
          +IL+LG  N GKT I+ +F  E      ISTI   + F  K ++ +    KL IWD  GQ
Sbjct: 16 RILMLGLDNAGKTTILKKFNGED-----ISTISPTLGFNIKTLEYNGY--KLNIWDVGGQ 68

Query: 67 ERFRTLTTAYY 77
          +  R+    Y+
Sbjct: 69 KSLRSYWRNYF 79

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 9  KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
          +IL+LG    GKT I++R    E    T I TIG  F  + +   ++  K Q+WD  GQ 
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVV--TTIPTIG--FNVETVTYKNL--KFQVWDLGGQT 54

Query: 68 RFRTLTTAYYRGAMGILLMYDVTN 91
            R     YY     I+ + D T+
Sbjct: 55 SIRPYWRCYYSNTDAIIYVVDSTD 78

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 30/138 (21%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIG-----IDFKQKIIDLDDVPTKLQIWDTA 64
           ILVLG    GKT ++H    E   ++ + T G     I  +  I++L ++          
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEI---------G 52

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           G +  R     Y  G+ G++ + D  + E      Q L+  L               PD+
Sbjct: 53  GSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLL------------QHPPDL 100

Query: 121 VKVLAGNKSDVKTQRAVQ 138
             V+  NK D+   R+VQ
Sbjct: 101 PLVVLANKQDLPAARSVQ 118

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 15/95 (15%)

Query: 10 ILVLGDSNVGKTCIVHRFCDETYY---------DTYISTIGIDFKQKIIDLDDVPTKLQI 60
          +L+LG  N GKT  + +   +T +              T+G++     I++     +L  
Sbjct: 2  VLILGLDNAGKTTFLEQT--KTKFSKNYKGLNPSKITPTVGLNIGT--IEVGK--ARLMF 55

Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF 95
          WD  GQE  R+L   YY  + G++ + D T+ E F
Sbjct: 56 WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERF 90

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYIS-TIGIDFKQ-KIIDLDDVPTKLQIWDTAGQE 67
          ILVLG  N GKT I+++          I  T+G + +  K  +L         +D +GQ 
Sbjct: 2  ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNL-----SFTAFDMSGQG 56

Query: 68 RFRTLTTAYYRGAMGILLMYD 88
          ++R L   YY+   GI+ + D
Sbjct: 57 KYRGLWEHYYKNIQGIIFVID 77

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 6  QTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
          +  +IL++G    GKT I+++    E    T I TIG  F  + ++  ++  K  +WD  
Sbjct: 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIG--FNVETVEYKNL--KFTMWDVG 69

Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
          GQ++ R L   YY+   G++ + D  + E
Sbjct: 70 GQDKLRPLWRHYYQNTNGLIFVVDSNDRE 98

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0092|consensus	200		100.0
KOG0080|consensus	209		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0094|consensus	221		100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
KOG0098|consensus	216		100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
KOG0087|consensus	222		100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0394|consensus	210		100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
KOG0093|consensus	193		100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0079|consensus	198		100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
PLN03108	210	Rab family protein; Provisional	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0091|consensus	213		100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0095|consensus	213		100.0
KOG0086|consensus	214		100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
PLN03118	211	Rab family protein; Provisional	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
KOG0088|consensus	218		100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.98
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.98
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.98
KOG0081|consensus	219		99.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
KOG0395|consensus	196		99.97
KOG0097|consensus	215		99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
KOG0083|consensus	192		99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
KOG0073|consensus	185		99.96
PRK12299	335	obgE GTPase CgtA; Reviewed	99.95
KOG0393|consensus	198		99.95
PTZ00099	176	rab6; Provisional	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.95
KOG0070|consensus	181		99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
KOG4252|consensus	246		99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.94
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.94
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
KOG3883|consensus	198		99.93
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.93
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.93
PRK12297	424	obgE GTPase CgtA; Reviewed	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.92
PRK11058	426	GTPase HflX; Provisional	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.92
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
cd00881	189	GTP_translation_factor GTP translation factor fami	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
KOG0075|consensus	186		99.91
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
KOG1673|consensus	205		99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.9
KOG0071|consensus	180		99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.89
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.89
COG0486	454	ThdF Predicted GTPase [General function prediction	99.89
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
PRK05433	600	GTP-binding protein LepA; Provisional	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
KOG0076|consensus	197		99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.86
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.86
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.86
KOG0074|consensus	185		99.86
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.86
KOG1489|consensus	366		99.85
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.85
COG2262	411	HflX GTPases [General function prediction only]	99.85
COG2229	187	Predicted GTPase [General function prediction only	99.84
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.84
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
KOG0072|consensus	182		99.84
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.84
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.84
COG0218	200	Predicted GTPase [General function prediction only	99.83
PRK10218	607	GTP-binding protein; Provisional	99.83
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.83
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.82
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.82
COG1084	346	Predicted GTPase [General function prediction only	99.82
KOG4423|consensus	229		99.82
PRK04004	586	translation initiation factor IF-2; Validated	99.82
KOG0096|consensus	216		99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
PRK12736	394	elongation factor Tu; Reviewed	99.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.8
COG1163	365	DRG Predicted GTPase [General function prediction	99.8
COG0536	369	Obg Predicted GTPase [General function prediction	99.79
CHL00071	409	tufA elongation factor Tu	99.79
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.79
PRK12735	396	elongation factor Tu; Reviewed	99.79
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.78
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.78
KOG1423|consensus	379		99.77
PLN00043	447	elongation factor 1-alpha; Provisional	99.77
PRK00049	396	elongation factor Tu; Reviewed	99.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.77
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
PTZ00141	446	elongation factor 1- alpha; Provisional	99.76
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.75
PLN03126	478	Elongation factor Tu; Provisional	99.75
PLN03127	447	Elongation factor Tu; Provisional	99.75
COG3596	296	Predicted GTPase [General function prediction only	99.75
KOG1191|consensus	531		99.75
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.75
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.74
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.74
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.73
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.72
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.72
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.71
KOG0462|consensus	650		99.71
PRK13351	687	elongation factor G; Reviewed	99.7
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.7
KOG1707|consensus	625		99.7
KOG0077|consensus	193		99.69
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.69
PRK09602	396	translation-associated GTPase; Reviewed	99.69
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.66
KOG1490|consensus	620		99.66
PRK09866	741	hypothetical protein; Provisional	99.65
PRK12739	691	elongation factor G; Reviewed	99.65
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
KOG1145|consensus	683		99.63
PTZ00258	390	GTP-binding protein; Provisional	99.63
KOG3905|consensus	473		99.62
PRK12740	668	elongation factor G; Reviewed	99.59
KOG0090|consensus	238		99.59
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.58
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.57
PRK00007	693	elongation factor G; Reviewed	99.57
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.56
PRK14845	1049	translation initiation factor IF-2; Provisional	99.55
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.55
KOG1532|consensus	366		99.54
KOG1486|consensus	364		99.54
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.53
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.53
PRK09601	364	GTP-binding protein YchF; Reviewed	99.53
KOG0461|consensus	522		99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.52
PRK13768	253	GTPase; Provisional	99.52
PRK07560	731	elongation factor EF-2; Reviewed	99.51
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.51
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.5
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.5
PTZ00416	836	elongation factor 2; Provisional	99.49
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.48
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.47
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.47
KOG1707|consensus	625		99.46
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.46
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.44
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.44
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.44
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.44
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.44
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.42
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.42
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.42
KOG1144|consensus	1064		99.41
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.39
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.38
KOG0410|consensus	410		99.38
KOG0458|consensus	603		99.38
KOG3886|consensus	295		99.37
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.36
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.32
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.31
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.29
KOG0705|consensus	749		99.29
KOG0082|consensus	354		99.29
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.29
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.26
KOG0468|consensus	971		99.26
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.26
KOG1487|consensus	358		99.18
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.15
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.14
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.11
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.05
KOG3887|consensus	347		99.03
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.03
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.02
KOG2655|consensus	366		99.02
PRK12289	352	GTPase RsgA; Reviewed	99.01
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.0
PRK00098	298	GTPase RsgA; Reviewed	98.98
KOG1491|consensus	391		98.95
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.95
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.95
KOG2486|consensus	320		98.93
PRK12288	347	GTPase RsgA; Reviewed	98.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.91
KOG1547|consensus	336		98.91
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.9
KOG1143|consensus	591		98.9
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.87
KOG0448|consensus	749		98.83
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.81
KOG1954|consensus	532		98.81
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.78
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.78
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.77
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.76
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.75
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.74
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.73
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.72
KOG0463|consensus	641		98.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.72
COG1161	322	Predicted GTPases [General function prediction onl	98.69
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.68
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.67
KOG0460|consensus	449		98.66
KOG0467|consensus	887		98.64
KOG0085|consensus	359		98.64
PRK10416	318	signal recognition particle-docking protein FtsY;	98.63
cd03112	158	CobW_like The function of this protein family is u	98.6
PRK12288	347	GTPase RsgA; Reviewed	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.59
KOG0466|consensus	466		98.58
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.55
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.54
PRK14974	336	cell division protein FtsY; Provisional	98.53
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.51
PRK01889	356	GTPase RsgA; Reviewed	98.5
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.45
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.44
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.44
COG1162	301	Predicted GTPases [General function prediction onl	98.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.44
PRK12289	352	GTPase RsgA; Reviewed	98.43
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.43
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.43
KOG0447|consensus	980		98.41
COG3523	1188	IcmF Type VI protein secretion system component Va	98.41
PRK13796	365	GTPase YqeH; Provisional	98.41
COG0523	323	Putative GTPases (G3E family) [General function pr	98.4
cd03114	148	ArgK-like The function of this protein family is u	98.4
PRK13796	365	GTPase YqeH; Provisional	98.39
KOG0464|consensus	753		98.37
KOG4273|consensus	418		98.37
KOG0099|consensus	379		98.35
KOG0459|consensus	501		98.32
KOG3859|consensus	406		98.31
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.29
PRK00098	298	GTPase RsgA; Reviewed	98.27
PRK13695	174	putative NTPase; Provisional	98.26
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.26
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.25
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.21
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.2
KOG1424|consensus	562		98.18
KOG2485|consensus	335		98.15
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.13
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.13
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.11
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.11
PRK10867	433	signal recognition particle protein; Provisional	98.1
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.06
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.03
TIGR00959	428	ffh signal recognition particle protein. This mode	98.0
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.94
KOG0465|consensus	721		97.93
COG1162	301	Predicted GTPases [General function prediction onl	97.93
KOG2484|consensus	435		97.92
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.9
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.89
PRK08118	167	topology modulation protein; Reviewed	97.89
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.89
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.89
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.88
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.88
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.84
PRK07261	171	topology modulation protein; Provisional	97.84
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.82
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.79
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.79
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.79
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.76
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.76
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.75
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.74
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.71
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.7
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.64
cd03111	106	CpaE_like This protein family consists of proteins	97.64
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.62
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.6
PRK06217	183	hypothetical protein; Validated	97.6
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.59
KOG0780|consensus	483		97.59
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.58
PRK03839	180	putative kinase; Provisional	97.56
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.54
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.53
PRK14530	215	adenylate kinase; Provisional	97.52
KOG3347|consensus	176		97.48
PRK14738	206	gmk guanylate kinase; Provisional	97.47
PRK13949	169	shikimate kinase; Provisional	97.47
KOG2423|consensus	572		97.47
PRK05541	176	adenylylsulfate kinase; Provisional	97.45
KOG0469|consensus	842		97.45
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.45
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.45
smart00382	148	AAA ATPases associated with a variety of cellular	97.45
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.44
PRK14532	188	adenylate kinase; Provisional	97.44
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.44
PRK01889	356	GTPase RsgA; Reviewed	97.44
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.43
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.43
PRK14531	183	adenylate kinase; Provisional	97.43
PF00004	132	AAA: ATPase family associated with various cellula	97.43
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.43
PRK05480	209	uridine/cytidine kinase; Provisional	97.43
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.41
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.41
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.4
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.39
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.39
PRK04195	482	replication factor C large subunit; Provisional	97.38
PRK00625	173	shikimate kinase; Provisional	97.38
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.38
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.37
PRK02496	184	adk adenylate kinase; Provisional	97.37
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.37
PTZ00088	229	adenylate kinase 1; Provisional	97.37
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.36
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.36
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.36
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.35
PRK08233	182	hypothetical protein; Provisional	97.34
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.34
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.34
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.33
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.33
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.33
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.32
KOG1970|consensus	634		97.31
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.31
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	97.31
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.3
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.3
cd02036	179	MinD Bacterial cell division requires the formatio	97.3
KOG3929|consensus	363		97.3
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.28

>KOG0084|consensus

Probab=100.00  E-value=1.2e-39  Score=218.67  Aligned_cols=171  Identities=49%  Similarity=0.909  Sum_probs=162.9

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      .-++-+||+++|.+|+|||.|+.+|..+.+...+..|.++++..+.+.+++....++||||+|+++|++...+|++++++
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEeecCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEVSCKQN  161 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  161 (184)
                      +|+|||+++..+|+.+..|+.++..       ....++|.++|+||+|+.+.+.++..++..++..++++ ++++||+++
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~-------~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~  157 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDR-------YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDS  157 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhh-------hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCc
Confidence            9999999999999999999999999       45678999999999999999999999999999999998 999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy12922        162 INIDEAFLTLARLIREQTR  180 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~~  180 (184)
                      .+|++.|..|...+..+..
T Consensus       158 ~NVe~~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  158 TNVEDAFLTLAKELKQRKG  176 (205)
T ss_pred             cCHHHHHHHHHHHHHHhcc
Confidence            9999999999998877654

>KOG0078|consensus

Probab=100.00  E-value=1.2e-37  Score=211.86  Aligned_cols=171  Identities=57%  Similarity=0.959  Sum_probs=163.1

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +.++-+||+++|.+|||||+++.++....+...+..+.++++..+.+..++....+++|||+|+++|+.+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|||+++..+++.+..|+..+..+       ....+|.++|+||+|+...+++...+..++|..+|++|+++||++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~-------a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~  160 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEH-------ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNF  160 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhh-------CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence            99999999999999999999999994       56699999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy12922        163 NIDEAFLTLARLIREQTR  180 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~  180 (184)
                      ||.+.|..|...+.+...
T Consensus       161 NI~eaF~~La~~i~~k~~  178 (207)
T KOG0078|consen  161 NIEEAFLSLARDILQKLE  178 (207)
T ss_pred             CHHHHHHHHHHHHHhhcc
Confidence            999999999999886443

>KOG0092|consensus

Probab=100.00  E-value=5.4e-38  Score=210.04  Aligned_cols=169  Identities=38%  Similarity=0.712  Sum_probs=160.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|..++|||||+-++-.+.|.....++++..+..+.+.+++..+++.||||+|+++|..+...|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            34689999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||+++.+||..++.|..++..       ...+++-+.||+||+|+.+.+++...+...++...+..++++|||+|.|+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~-------~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv  155 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQR-------QASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENV  155 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHh-------hCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCH
Confidence            99999999999999999999999       45688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      +++|..|.+.+.....
T Consensus       156 ~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  156 NEIFQAIAEKLPCSDP  171 (200)
T ss_pred             HHHHHHHHHhccCccc
Confidence            9999999999886543

>KOG0080|consensus

Probab=100.00  E-value=6.8e-38  Score=203.43  Aligned_cols=170  Identities=44%  Similarity=0.748  Sum_probs=161.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|.+|+|||||+.++....+.+....+++.++..+.+.+++..+++.||||+|+++|+.+...|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            56799999999999999999999999999898889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||++..+++..+..|++++..+      -.++++..++|+||.|....+.++..+..++++++++.|+++||++.+||
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Y------stn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V  162 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLY------STNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENV  162 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhh------cCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence            999999999999999999999987      56788889999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      +..|+.+...+.+...
T Consensus       163 ~~~FeelveKIi~tp~  178 (209)
T KOG0080|consen  163 QCCFEELVEKIIETPS  178 (209)
T ss_pred             HHHHHHHHHHHhcCcc
Confidence            9999999999886543

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=6.6e-37  Score=213.19  Aligned_cols=168  Identities=42%  Similarity=0.662  Sum_probs=153.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+++|..|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888777778888888888888889889999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|||++++.+++.+..|+.++...        .++.|++||+||+|+.+.+.+...++..+++..+++++++||++|.|
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~--------~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~  154 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEH--------APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN  154 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            9999999999999999999999763        35899999999999988778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQT  179 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~  179 (184)
                      |+++|++|.+.+....
T Consensus       155 V~~~F~~l~~~i~~~~  170 (189)
T cd04121         155 ITESFTELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999998776543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=6.6e-37  Score=215.07  Aligned_cols=164  Identities=42%  Similarity=0.762  Sum_probs=149.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899988988888888998899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCCCCHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDE  166 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~  166 (184)
                      |++++++++.+..|+..+..       ....+.|+++|+||+|+...+++.......+++.. ++.++++||++|.|+++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~-------~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e  153 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDK-------YASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDE  153 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence            99999999999999988776       34568999999999999877788888888888775 78999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        167 AFLTLARLIREQ  178 (184)
Q Consensus       167 ~~~~l~~~~~~~  178 (184)
                      +|.+|.+.+...
T Consensus       154 ~F~~l~~~~~~~  165 (202)
T cd04120         154 IFLKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094|consensus

Probab=100.00  E-value=2.3e-37  Score=207.22  Aligned_cols=168  Identities=36%  Similarity=0.655  Sum_probs=159.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .-+.+||+++|..++||||||.++..+.+...|.++++.++...++.+.+..+++++|||+|+++|+.+...|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCC-CCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP-DVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      |+|||+++..++++..+|++.+..       .+.. ++.+++|+||.|+.+.+++...+....++++++.|+++||+.|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~-------e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~  171 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRR-------ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGE  171 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHh-------ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence            999999999999999999999998       4444 58999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIREQ  178 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~  178 (184)
                      ||..+|..|...+++.
T Consensus       172 NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  172 NVKQLFRRIAAALPGM  187 (221)
T ss_pred             CHHHHHHHHHHhccCc
Confidence            9999999998888765

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.2e-35  Score=203.65  Aligned_cols=163  Identities=42%  Similarity=0.799  Sum_probs=148.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988888888888888777778888888999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||++++.+++.+..|+..+..       ...++.|+++|+||+|+...+.....++.+++...+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e  154 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARN-------LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVED  154 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence            999999999999999998876       3456799999999999988777788888899998999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|.++.+.+.
T Consensus       155 ~f~~l~~~~~  164 (166)
T cd04122         155 AFLETAKKIY  164 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.4e-35  Score=202.41  Aligned_cols=166  Identities=54%  Similarity=0.970  Sum_probs=149.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35699999999999999999999999998888898888888788888888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++++++.+..|+..+..       ....+.|+++|+||+|+.+.+.....+...++...+++++++||++|.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  153 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEE-------HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV  153 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHH-------hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999877       34568999999999999876667777788888888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIRE  177 (184)
Q Consensus       165 ~~~~~~l~~~~~~  177 (184)
                      +++|+++.+.+..
T Consensus       154 ~~~~~~i~~~~~~  166 (167)
T cd01867         154 EEAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.1e-35  Score=203.48  Aligned_cols=167  Identities=35%  Similarity=0.568  Sum_probs=146.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||+.++..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998877788877444 34566788888999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||++++.+++.+..|+..+...      ....++|+++|+||+|+.+.+.+...+...+++..++++++|||++|.|+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~------~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  154 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRV------RLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDD  154 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHh------cCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHH
Confidence            9999999999999888877663      2346799999999999987777888888899998999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12922        167 AFLTLARLIREQTR  180 (184)
Q Consensus       167 ~~~~l~~~~~~~~~  180 (184)
                      +|++|.+.+.+...
T Consensus       155 ~f~~l~~~~~~~~~  168 (172)
T cd04141         155 AFHGLVREIRRKES  168 (172)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999988776443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.2e-35  Score=204.55  Aligned_cols=164  Identities=26%  Similarity=0.493  Sum_probs=145.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+++|.+|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            46789999999999999999999999999888888887555 45677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC
Q psy12922         84 LLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS  150 (184)
Q Consensus        84 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~  150 (184)
                      ++|||++++.+++.+ ..|+..+...        .++.|++||+||+|+.+            .+.+...++.++++..+
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~--------~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  152 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG  152 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH--------CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence            999999999999997 7899988763        35799999999999864            34578889999999999


Q ss_pred             C-CEEEeecCCCCC-HHHHHHHHHHHHH
Q psy12922        151 L-PFYEVSCKQNIN-IDEAFLTLARLIR  176 (184)
Q Consensus       151 ~-~~~~~Sa~~~~g-v~~~~~~l~~~~~  176 (184)
                      + +|++|||++|.| |+++|..+.+.+.
T Consensus       153 ~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         153 AATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            6 899999999998 9999999888543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.9e-35  Score=203.60  Aligned_cols=167  Identities=40%  Similarity=0.731  Sum_probs=147.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC----------CeeEEEEEEeCCCccccccchH
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------DVPTKLQIWDTAGQERFRTLTT   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~   74 (184)
                      ++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+.          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999988888888877776665543          3567899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      .+++++|++++|||+++++++..+..|+..+...      ....+.|+++|+||+|+.+.+.....+...++...+++++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  155 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH------AYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF  155 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence            9999999999999999999999999999988764      3346789999999999987777777888999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++||++|.|++++|++|.+.+.+
T Consensus       156 e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         156 ETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.8e-35  Score=200.21  Aligned_cols=160  Identities=45%  Similarity=0.848  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      ++|+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888888888888888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++++++.+..|+..+...       ...+.|+++|+||.|+...+.+...+...+++..+++++++||++|.|++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~-------~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  153 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEY-------APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKES  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999988763       3457999999999999877777788888999989999999999999999999


Q ss_pred             HHHHHHH
Q psy12922        168 FLTLARL  174 (184)
Q Consensus       168 ~~~l~~~  174 (184)
                      |.+|.++
T Consensus       154 f~~l~~~  160 (161)
T cd04117         154 FTRLTEL  160 (161)
T ss_pred             HHHHHhh
Confidence            9999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0098|consensus

Probab=100.00  E-value=1.3e-35  Score=197.40  Aligned_cols=170  Identities=40%  Similarity=0.739  Sum_probs=160.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....+|++++|..|+|||.|+.+++...|...+..|.++++....+.+++..+++++|||+|++.|+.+..+|++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|||+++.++|.++..|+..+.++       ...+..++|++||+|+...+++...+...|+++.+..+.++||++++|
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~-------~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~  155 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQH-------SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAEN  155 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHh-------cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhh
Confidence            9999999999999999999999984       478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy12922        164 IDEAFLTLARLIREQTR  180 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~  180 (184)
                      +++.|-.+...+...-+
T Consensus       156 VEEaF~nta~~Iy~~~q  172 (216)
T KOG0098|consen  156 VEEAFINTAKEIYRKIQ  172 (216)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998888776443

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=6.3e-35  Score=205.88  Aligned_cols=170  Identities=34%  Similarity=0.625  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +||+++|.+|||||||+++|..+.+...+.++.+.++....+..+ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888888888887777777 7788899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCCHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINID  165 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  165 (184)
                      ||++++++++.+..|+..+......   ....++|+++|+||+|+...+.....++..++...+ ++++++||++|.|++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~---~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~  157 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTL---PNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIE  157 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcc---cCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHH
Confidence            9999999999999999888753110   124678999999999998666777788889999888 689999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy12922        166 EAFLTLARLIREQTR  180 (184)
Q Consensus       166 ~~~~~l~~~~~~~~~  180 (184)
                      ++|++|.+.+....+
T Consensus       158 e~f~~l~~~l~~~~~  172 (201)
T cd04107         158 EAMRFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHHHHhch
Confidence            999999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=9e-35  Score=199.14  Aligned_cols=162  Identities=46%  Similarity=0.825  Sum_probs=145.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988788888887777777777777888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++++++.+..|+..+..       ....+.|+++|+||+|+.+.+.........++...+++++++||++|.|++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~-------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  154 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKT-------YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQV  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-------hCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999998876       34467899999999999876677777788888888999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        168 FLTLARLIR  176 (184)
Q Consensus       168 ~~~l~~~~~  176 (184)
                      |+++.+.+.
T Consensus       155 ~~~l~~~~~  163 (165)
T cd01865         155 FERLVDIIC  163 (165)
T ss_pred             HHHHHHHHH
Confidence            999988764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0087|consensus

Probab=100.00  E-value=2.1e-35  Score=200.23  Aligned_cols=174  Identities=39%  Similarity=0.688  Sum_probs=165.2

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..++.+||+++|.+++|||-|+.+++..+|..+..++.++++....+.++++.+..+||||+|+++|+++...|++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      .++|||++...+++.+..|+.+++.+       ...++++++|+||+|+.+.+.+..++...++...+..++++||.++.
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdh-------ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t  162 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDH-------ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT  162 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhc-------CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence            99999999999999999999999994       56799999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhc
Q psy12922        163 NIDEAFLTLARLIREQTRLQA  183 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~~~  183 (184)
                      +++..|+.+...+.....++.
T Consensus       163 NVe~aF~~~l~~I~~~vs~k~  183 (222)
T KOG0087|consen  163 NVEKAFERVLTEIYKIVSKKQ  183 (222)
T ss_pred             cHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999887666553

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.3e-34  Score=198.53  Aligned_cols=163  Identities=53%  Similarity=0.950  Sum_probs=147.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988878888888888888888888888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|+++++++..+..|+..+...       ...+.|+++|+||+|+.........+...++...+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~-------~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  154 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRY-------ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQ  154 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHh-------CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHH
Confidence            9999999999999999998763       346799999999999977667777788888888999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|.+|.+.+.
T Consensus       155 ~~~~i~~~~~  164 (166)
T cd01869         155 AFMTMAREIK  164 (166)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=7.9e-35  Score=198.86  Aligned_cols=162  Identities=37%  Similarity=0.630  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999999888777777765 44556677788888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.+++....|+..+...      ....+.|+++|+||+|+...+.........++..++++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  153 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRV------KDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDE  153 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999888764      2346899999999999976666666677778888889999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      +|+++.+.+
T Consensus       154 l~~~l~~~~  162 (163)
T cd04136         154 VFADLVRQI  162 (163)
T ss_pred             HHHHHHHhc
Confidence            999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0394|consensus

Probab=100.00  E-value=2.1e-35  Score=195.95  Aligned_cols=173  Identities=39%  Similarity=0.652  Sum_probs=158.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      +..-+||+++|.+|+|||||++++.+..|...+..+++.++..+.+.+++..++++||||+|+++|.++...|++.+|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            35569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--CccccHHHHHHHHHhcC-CCEEEeecCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRAVQTKDAQMLADNYS-LPFYEVSCKQ  160 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  160 (184)
                      ++|||++++.+++.+..|..++..+...   ..+..-|++|++||.|+..  .++++...++.++...+ +|||++|||.
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~---~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~  162 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASP---QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKE  162 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCC---CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccc
Confidence            9999999999999999999999886432   3456789999999999976  37899999999998775 7999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIREQT  179 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~  179 (184)
                      ..||++.|+.+...+....
T Consensus       163 ~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  163 ATNVDEAFEEIARRALANE  181 (210)
T ss_pred             cccHHHHHHHHHHHHHhcc
Confidence            9999999999998877654

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1e-34  Score=200.17  Aligned_cols=160  Identities=27%  Similarity=0.533  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|+|||||+.++..+.+..++.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888889887655 445667888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc----------cccHHHHHHHHHhcCC-CEEE
Q psy12922         88 DVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR----------AVQTKDAQMLADNYSL-PFYE  155 (184)
Q Consensus        88 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~  155 (184)
                      |++++.+++.+ ..|+..+...        ..+.|++||+||+|+.+.+          .+...+...+++..++ ++++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~--------~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E  152 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHY--------APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE  152 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999998 6899988763        3579999999999996543          4677888999999998 5999


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      |||++|.|++++|+.+.+.+.
T Consensus       153 ~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         153 CSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CCCCcccCHHHHHHHHHHHHh
Confidence            999999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.7e-34  Score=197.67  Aligned_cols=163  Identities=43%  Similarity=0.760  Sum_probs=147.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..+||+++|.+|||||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999998888888898888888888888888889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.++..+..|+..+...       ...+.|+++|+||+|+...+.....+...++...+++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  154 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVE  154 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            99999999999999999998773       34469999999999998777777777888888889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        166 EAFLTLARLI  175 (184)
Q Consensus       166 ~~~~~l~~~~  175 (184)
                      ++++++.+.+
T Consensus       155 ~l~~~l~~~i  164 (165)
T cd01868         155 EAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.1e-34  Score=198.51  Aligned_cols=163  Identities=33%  Similarity=0.585  Sum_probs=142.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|||||||++++..+.+...+.++.+..+ ...+...+..+.+.+|||||++++..++..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887777777776444 45566788888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||++++.+++.+..|+..+...      ....+.|+++|+||+|+.........+...+++..+++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  153 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNE  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence            9999999999999999988764      3457899999999999987667777777788888899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|.++.+.+.
T Consensus       154 ~~~~l~~~l~  163 (164)
T cd04175         154 IFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.5e-34  Score=198.27  Aligned_cols=167  Identities=30%  Similarity=0.654  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.++.+...+.++.+.++....+...+..+.+++|||||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888899988888888888888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+.......  ....+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  158 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPH--GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM  158 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhcccc--ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            9999999999999999988742100  11357999999999999765667777777888888899999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        168 FLTLARLIR  176 (184)
Q Consensus       168 ~~~l~~~~~  176 (184)
                      +++|.+.+.
T Consensus       159 ~~~l~~~l~  167 (168)
T cd04119         159 FQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=3.3e-34  Score=201.84  Aligned_cols=169  Identities=45%  Similarity=0.834  Sum_probs=150.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++.++|+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45679999999999999999999999988778888888888878887888888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++++++.+..|+..+...        ....|++||+||+|+.........+...++...+++++++||++|.|
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~--------~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g  154 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQN--------CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN  154 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence            9999999999999999999988763        46789999999999987666677778888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy12922        164 IDEAFLTLARLIREQTR  180 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~  180 (184)
                      ++++|++|.+.+.....
T Consensus       155 i~~lf~~l~~~~~~~~~  171 (199)
T cd04110         155 VEEMFNCITELVLRAKK  171 (199)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999998876543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3.3e-34  Score=203.33  Aligned_cols=168  Identities=38%  Similarity=0.736  Sum_probs=149.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      .+||+++|.+|||||||+++|....+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888778888888888777766 4667889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |||++++.+++.+..|+..+...      ......|++||+||+|+...+.+.......+++.++++++++||++|.|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~------~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~  155 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSH------IQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVE  155 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh------cCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence            99999999999999999988763      234568899999999998777778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy12922        166 EAFLTLARLIREQTR  180 (184)
Q Consensus       166 ~~~~~l~~~~~~~~~  180 (184)
                      ++|++|.+.+.+...
T Consensus       156 e~f~~l~~~~~~~~~  170 (211)
T cd04111         156 EAFELLTQEIYERIK  170 (211)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=200.29  Aligned_cols=167  Identities=35%  Similarity=0.605  Sum_probs=145.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ..++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4579999999999999999999999888777777776555 455667888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++++++.+..|+..+...      ....+.|+++|+||+|+...+.+...+...++...+++++++||++|.|+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~------~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi  155 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRV------KDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNV  155 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence            999999999999999999988764      23458999999999999766666666777888888899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQ  178 (184)
Q Consensus       165 ~~~~~~l~~~~~~~  178 (184)
                      +++|.+|.+.+.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (189)
T PTZ00369        156 DEAFYELVREIRKY  169 (189)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887764

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=2.5e-34  Score=196.91  Aligned_cols=162  Identities=44%  Similarity=0.765  Sum_probs=145.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56899999999999999999999988877778888878877888888887889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCCH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINI  164 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv  164 (184)
                      |+|++++.+++.+..|+..+..       ....+.|+++|+||+|+...++.....+..++...++ .++++||++|.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  154 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEK-------YGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNV  154 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHH-------hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence            9999999999999999999876       3456899999999999987777777788888888886 6899999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        165 DEAFLTLARL  174 (184)
Q Consensus       165 ~~~~~~l~~~  174 (184)
                      +++++++.+.
T Consensus       155 ~~~~~~l~~~  164 (165)
T cd01864         155 EEAFLLMATE  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.7e-34  Score=199.50  Aligned_cols=167  Identities=44%  Similarity=0.831  Sum_probs=149.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999987778888887887777878888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++++++.+..|+..+..       ......|+++|+||+|+.+...........++...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~-------~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~  153 (188)
T cd04125          81 DVTDQESFENLKFWINEINR-------YARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEA  153 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999887       33456899999999999876677777778888888999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy12922        168 FLTLARLIREQTRL  181 (184)
Q Consensus       168 ~~~l~~~~~~~~~~  181 (184)
                      |+++.+.+......
T Consensus       154 f~~l~~~~~~~~~~  167 (188)
T cd04125         154 FILLVKLIIKRLEE  167 (188)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998875543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.1e-34  Score=199.24  Aligned_cols=160  Identities=24%  Similarity=0.492  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999999888888887555 45677888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcCC-C
Q psy12922         87 YDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYSL-P  152 (184)
Q Consensus        87 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~  152 (184)
                      ||++++++++.+ ..|+..+...        .++.|+++|+||+|+.+            .+.+...++.++++..++ +
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~--------~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~  151 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEF--------CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI  151 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHH--------CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCE
Confidence            999999999996 7899988763        35799999999999854            245778889999999997 7


Q ss_pred             EEEeecCCCCC-HHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNIN-IDEAFLTLARLI  175 (184)
Q Consensus       153 ~~~~Sa~~~~g-v~~~~~~l~~~~  175 (184)
                      |+++||++|+| ++++|..+.+..
T Consensus       152 ~~E~SA~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         152 YLECSAFTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             EEECccCcCCcCHHHHHHHHHHHH
Confidence            99999999995 999999998854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=5.2e-34  Score=203.06  Aligned_cols=170  Identities=39%  Similarity=0.714  Sum_probs=153.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            46699999999999999999999999887788888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+..       ....+.|+++|+||+|+.+.+.........++...+++++++||++|.|+
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~-------~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v  162 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRD-------HADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV  162 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHH-------hCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999998877       33468999999999999877777777888888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy12922        165 DEAFLTLARLIREQTRL  181 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~~  181 (184)
                      +++|+++.+.+.+....
T Consensus       163 ~~lf~~l~~~i~~~~~~  179 (216)
T PLN03110        163 EKAFQTILLEIYHIISK  179 (216)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999988775443

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.7e-34  Score=201.03  Aligned_cols=164  Identities=24%  Similarity=0.486  Sum_probs=141.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..+||+++|..|||||||+.++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            358999999999999999999999999888888887544 3445678888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcC-C
Q psy12922         86 MYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYS-L  151 (184)
Q Consensus        86 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~  151 (184)
                      |||++++++++.+. .|...+...        ..++|++||+||+|+.+..            .+...+...+++..+ +
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~--------~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~  152 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHH--------CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV  152 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence            99999999999996 587777652        3579999999999996532            245567788888888 5


Q ss_pred             CEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +++++||++|.|++++|.++.+.+...
T Consensus       153 ~~~e~SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         153 KYLECSALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence            899999999999999999999987654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=7.5e-34  Score=195.13  Aligned_cols=166  Identities=40%  Similarity=0.753  Sum_probs=148.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+++|.+|||||||++++.+..+...+.++.+.++....+...+....+.+||+||++++......+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            35689999999999999999999999887777888888888888888888888999999999999998999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.++..+..|+..+..       ...++.|+++|+||.|+.........+...++...+++++++||++++|+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i  154 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQ-------HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV  154 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999977       34578999999999999876677777788888888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIRE  177 (184)
Q Consensus       165 ~~~~~~l~~~~~~  177 (184)
                      +++|.++.+.+.+
T Consensus       155 ~~~~~~~~~~~~~  167 (168)
T cd01866         155 EEAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887753

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0093|consensus

Probab=100.00  E-value=1e-34  Score=186.00  Aligned_cols=168  Identities=43%  Similarity=0.809  Sum_probs=157.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+|++++|+..+|||||+.++.+..+...+.++.++++..+++-...+.+.+++|||+|++.|+.+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            56789999999999999999999999999999999999999999866677789999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||.+|.+++..++.|.-++..       ..-.+.|+|+|+||||+..++.+.....+.++.++|..||++|||.+.||
T Consensus        99 LmyDitNeeSf~svqdw~tqIkt-------ysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinV  171 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKT-------YSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINV  171 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHhee-------eeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence            99999999999999999999987       45679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      ..+|+.+...+....
T Consensus       172 k~~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  172 KQVFERLVDIICDKM  186 (193)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988876543

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=4.3e-34  Score=198.44  Aligned_cols=164  Identities=25%  Similarity=0.490  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|+|||||++++..+.+...+.|+.+.++....+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999988888888888998899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-----ccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-----RAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      |++++.+++.+..|+..+...       .....| ++|+||+|+...     ..........++...+++++++||++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~-------~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGF-------NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-------CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999988763       234567 678999998521     1122345677888888999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIREQT  179 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~  179 (184)
                      |++++|+++.+.+.+.+
T Consensus       153 ~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         153 NVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             CHHHHHHHHHHHHHhcC
Confidence            99999999998887643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.9e-34  Score=203.33  Aligned_cols=165  Identities=22%  Similarity=0.434  Sum_probs=146.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.||||+|++.|..+...+++++|+++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            46789999999999999999999999998888898876654 45778899999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~  151 (184)
                      +|||++++++++.. ..|+..+...        .++.|+++|+||+|+.+            .+.+...++..+++..++
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~--------~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~  161 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDY--------CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA  161 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence            99999999999984 7899988763        35789999999999864            356788899999999999


Q ss_pred             -CEEEeecCCCC-CHHHHHHHHHHHHHHH
Q psy12922        152 -PFYEVSCKQNI-NIDEAFLTLARLIREQ  178 (184)
Q Consensus       152 -~~~~~Sa~~~~-gv~~~~~~l~~~~~~~  178 (184)
                       .|++|||++|. |++++|..+...+.+.
T Consensus       162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         162 EVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence             69999999998 8999999999887653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=5.4e-34  Score=194.61  Aligned_cols=161  Identities=42%  Similarity=0.760  Sum_probs=151.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+......+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999988999998889999999999999999999999999999988999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  168 (184)
                      ++++++++.+..|+..+...       ...+.|++||+||.|+.+.+++...++..++..++++|+++||+++.|+.++|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~-------~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKY-------KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHH-------STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHH
T ss_pred             cccccccccccccccccccc-------ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999984       34579999999999999878889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy12922        169 LTLARLIR  176 (184)
Q Consensus       169 ~~l~~~~~  176 (184)
                      ..+.+.+.
T Consensus       154 ~~~i~~i~  161 (162)
T PF00071_consen  154 QELIRKIL  161 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998774

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=7.2e-34  Score=202.37  Aligned_cols=167  Identities=34%  Similarity=0.536  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +||+++|.+|||||||+++|....+...+.++.+.++....+.+++ ..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999999888888777764 578899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||++++++++.+..|+..+.....    ....++|+++|+||+|+.+.+.+.......++...+++++++||++|+|+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~----~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~  156 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLK----SSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNL  156 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcc----ccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence            999999999999999999887421    1134678999999999987677777788889998999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        167 AFLTLARLIREQ  178 (184)
Q Consensus       167 ~~~~l~~~~~~~  178 (184)
                      +|++|.+.+...
T Consensus       157 lf~~l~~~l~~~  168 (215)
T cd04109         157 LFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.2e-33  Score=194.28  Aligned_cols=163  Identities=37%  Similarity=0.736  Sum_probs=143.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|.+|||||||++++..+.+...+.++.+.++....+.+.+..+.+++||+||+++|..++..+++.+|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988999999988887888888888899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ++++.++.....|+..+...      ......|+++|+||.|+.....  ........++...+++++++||++|.|+++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~------~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~  155 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKE------NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVRE  155 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHh------cCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999988653      2344678999999999865332  334556677888889999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        167 AFLTLARLIRE  177 (184)
Q Consensus       167 ~~~~l~~~~~~  177 (184)
                      +|+.|.+.+.+
T Consensus       156 lf~~l~~~~~~  166 (170)
T cd04108         156 FFFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=8.4e-34  Score=198.65  Aligned_cols=165  Identities=47%  Similarity=0.888  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +||+++|.+|||||||++++....+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988753 5677777777777777888888999999999999998888999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++++++.+..|+..+..       ....+.|+++|+||+|+...+.....+...++...+++++++||++|.|+++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~-------~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~  153 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKE-------YAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVEL  153 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999998887       3445899999999999976666667778888888899999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        167 AFLTLARLIREQT  179 (184)
Q Consensus       167 ~~~~l~~~~~~~~  179 (184)
                      +|.+|.+.+.+..
T Consensus       154 l~~~l~~~~~~~~  166 (191)
T cd04112         154 AFTAVAKELKHRK  166 (191)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079|consensus

Probab=100.00  E-value=9.8e-35  Score=186.34  Aligned_cols=167  Identities=44%  Similarity=0.811  Sum_probs=158.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++-++.+|+|.+|+|||||+-++....|...|..+++.++..+++.++|..+.+.|||++|++.|+.+...+++..++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||+++.++|...+.|++++..        +++.+|-++|+||.|.++.+.+...+++.++...++.+|++||+.++|+
T Consensus        86 vVYDVTn~ESF~Nv~rWLeei~~--------ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~Nv  157 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKRWLEEIRN--------NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENV  157 (198)
T ss_pred             EEEECcchhhhHhHHHHHHHHHh--------cCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccc
Confidence            99999999999999999999986        5679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      +..|..|.+++....
T Consensus       158 E~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  158 EAMFHCITKQVLQAK  172 (198)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999887654

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=8e-34  Score=193.64  Aligned_cols=160  Identities=46%  Similarity=0.799  Sum_probs=145.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888887888888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.++..+..|+..+..       ...++.|+++|+||.|+.........+...++...+++++++||+++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113          81 DITNRTSFEALPTWLSDARA-------LASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEA  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999998876       34578999999999999876777778888888889999999999999999999


Q ss_pred             HHHHHHH
Q psy12922        168 FLTLARL  174 (184)
Q Consensus       168 ~~~l~~~  174 (184)
                      |+++.+.
T Consensus       154 ~~~~~~~  160 (161)
T cd04113         154 FLKCARS  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=7.7e-34  Score=194.08  Aligned_cols=162  Identities=33%  Similarity=0.618  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|+|||||++++..+.+...+.++.. ++....+..++....+.+|||||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988777766664 55556677788888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.++.++..|+..+...      ....++|+++|+||+|+.............++...+++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  153 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRV------KGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNE  153 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHH
Confidence            9999999999999999888774      2346899999999999976556666667777777889999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      +|.++.+.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd04176         154 LFAEIVRQM  162 (163)
T ss_pred             HHHHHHHhc
Confidence            999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=9.5e-34  Score=193.36  Aligned_cols=159  Identities=38%  Similarity=0.678  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC--CeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +||+++|.+|+|||||++++....+...+.++.+.++....+.+.  +..+.+++||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998887888888888776666666  777889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++++++.+..|+..+...        ..+.|+++|+||+|+..+..+...+...++...+++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~--------~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  152 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE--------CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVT  152 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999888652        4589999999999998767777778888899999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        166 EAFLTLARL  174 (184)
Q Consensus       166 ~~~~~l~~~  174 (184)
                      +++++|.+.
T Consensus       153 ~l~~~l~~~  161 (162)
T cd04106         153 ELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.3e-33  Score=193.04  Aligned_cols=162  Identities=40%  Similarity=0.654  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.+..+...+.++.+ +........++..+.+.+|||||++++...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888777777665 334455667788888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+...      ....+.|+++|+||+|+...+.........++...+++++++||++|.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~------~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRV------KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHH
Confidence            999999999999998888764      33457999999999999876667777778888888899999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        168 FLTLARLIR  176 (184)
Q Consensus       168 ~~~l~~~~~  176 (184)
                      |++|.+.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T smart00173      154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999987664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.2e-33  Score=195.21  Aligned_cols=159  Identities=23%  Similarity=0.443  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999988888888875554 45667888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcC-CCE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYS-LPF  153 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~  153 (184)
                      |++++++++.+. .|+..+...        .++.|+++|+||+|+.+.            +.+...++..+++..+ +.+
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~--------~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~  152 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH--------CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKY  152 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEE
Confidence            999999999996 588777652        357999999999998543            4556667788888887 689


Q ss_pred             EEeecCCCCCHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +++||++|.|++++|+.++..+
T Consensus       153 ~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         153 VECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             EEecCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999988753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=8.7e-34  Score=198.42  Aligned_cols=167  Identities=34%  Similarity=0.593  Sum_probs=143.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||||++++...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777777776444 3445578888889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  168 (184)
                      ++++.+++.+..|+..+.....    ....+.|+++|+||+|+...+.+.......++...+++++++||++|.|++++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKD----ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc----ccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence            9999999999999988876310    113678999999999997766777777788888889999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy12922        169 LTLARLIREQTR  180 (184)
Q Consensus       169 ~~l~~~~~~~~~  180 (184)
                      +++.+.+.+.++
T Consensus       156 ~~l~~~l~~~~~  167 (190)
T cd04144         156 YTLVRALRQQRQ  167 (190)
T ss_pred             HHHHHHHHHhhc
Confidence            999998876544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.8e-33  Score=192.22  Aligned_cols=163  Identities=53%  Similarity=0.927  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999998887788888888888888888888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+...       ...++|+++|+||+|+...++........++...+++++++|+++|.|++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~-------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l  153 (164)
T smart00175       81 DITNRESFENLKNWLKELREY-------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999988873       3468999999999999876677777788888888999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        168 FLTLARLIRE  177 (184)
Q Consensus       168 ~~~l~~~~~~  177 (184)
                      +++|.+.+.+
T Consensus       154 ~~~i~~~~~~  163 (164)
T smart00175      154 FEELAREILK  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

Rab GTPases are implicated in vesicle trafficking.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=3.3e-33  Score=191.02  Aligned_cols=162  Identities=35%  Similarity=0.587  Sum_probs=140.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++....+.+|||||+.++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999887767667666433 44556788888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+.........++...+++++++||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  154 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRV------KDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDK  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHH------hCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHH
Confidence            9999999999999999888764      3456899999999999987666677777888888889999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      +|++|.+.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04145         155 AFHDLVRVI  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.8e-33  Score=190.78  Aligned_cols=161  Identities=34%  Similarity=0.598  Sum_probs=138.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999888777777776443 45556777777899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.+++.+..|+..+...      ....+.|+++|+||+|+.. +.........++...+++++++||++|.|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~------~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  152 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRV------KDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEE  152 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHH
Confidence            9999999999999898888764      2346899999999999976 35556667778888899999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      +|++|.+.+
T Consensus       153 l~~~l~~~~  161 (162)
T cd04138         153 AFYTLVREI  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=5.4e-33  Score=197.08  Aligned_cols=167  Identities=41%  Similarity=0.768  Sum_probs=150.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++.+||+++|++|||||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998887777888888888878888888888999999999999888889999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+..       ......|+++|+||+|+...+.....+..++++..+++++++||+++.|+
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~-------~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  156 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQ-------HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHH-------hcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999888766       33468999999999999877777888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQ  178 (184)
Q Consensus       165 ~~~~~~l~~~~~~~  178 (184)
                      +++|+++.+.+...
T Consensus       157 ~e~f~~l~~~~~~~  170 (210)
T PLN03108        157 EEAFIKTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888754

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.4e-33  Score=199.94  Aligned_cols=164  Identities=31%  Similarity=0.560  Sum_probs=144.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.+..++..+++.+|+++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56789999999999999999999999988888999988888777777777889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||++++.+++.+..|+..+...        ..+.|+++|+||+|+... ....... .++...+++++++||++|.|+
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~--------~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i  160 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNF  160 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh--------CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCH
Confidence            999999999999999999999863        357999999999998642 3333334 667778899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQ  178 (184)
Q Consensus       165 ~~~~~~l~~~~~~~  178 (184)
                      +++|.+|.+.+.+.
T Consensus       161 ~~~f~~l~~~~~~~  174 (219)
T PLN03071        161 EKPFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999988653

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=4.3e-33  Score=190.29  Aligned_cols=162  Identities=42%  Similarity=0.780  Sum_probs=145.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|++|||||||++++.+..+.....++.+..+....+..++....+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998777788888778778888888888999999999999988899999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++++++....|+..+...       ..+..|+++++||+|+.........+...++...+++++++||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  153 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRN-------ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNE  153 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence            9999999999999999999873       447899999999999886666677777888888889999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      ++++|.+.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd01860         154 LFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHh
Confidence            999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.5e-33  Score=191.43  Aligned_cols=163  Identities=30%  Similarity=0.603  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++....+...+.++.+.++....+...+..+.+.+|||+|++.+..++..++..+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887778888888887777777888889999999999999988889999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+...        ..+.|+++|+||+|+.+. .... ....++...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--------~~~~piiiv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~  150 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRV--------CGNIPIVLCGNKVDIKDR-KVKA-KQITFHRKKNLQYYEISAKSNYNFEKP  150 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------CCCCcEEEEEEchhcccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCChHHH
Confidence            999999999999999999873        238999999999999742 3322 344566677789999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy12922        168 FLTLARLIREQTR  180 (184)
Q Consensus       168 ~~~l~~~~~~~~~  180 (184)
                      |++|.+.+....+
T Consensus       151 f~~l~~~~~~~~~  163 (166)
T cd00877         151 FLWLARKLLGNPN  163 (166)
T ss_pred             HHHHHHHHHhccc
Confidence            9999998876443

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.5e-33  Score=190.38  Aligned_cols=160  Identities=40%  Similarity=0.700  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+++||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999888888888888888888888888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+..       ....+.|+++|+||+|+.+...........++...+++++++||+++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  153 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRD-------ERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKEL  153 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHH-------hCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence            99999999999999998876       33447999999999999665666777777888888899999999999999999


Q ss_pred             HHHHHHH
Q psy12922        168 FLTLARL  174 (184)
Q Consensus       168 ~~~l~~~  174 (184)
                      +.++.+.
T Consensus       154 ~~~i~~~  160 (161)
T cd01861         154 FRKIASA  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.5e-33  Score=191.60  Aligned_cols=163  Identities=42%  Similarity=0.800  Sum_probs=145.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-cchHhhhcCCcEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-TLTTAYYRGAMGILL   85 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~   85 (184)
                      .++|+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999988887788888888888888888988899999999998886 567888999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC---CC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~  162 (184)
                      |||++++.++..+..|+..+...      ....++|+++|+||+|+...+.+.......++...+++++++||++   +.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~  155 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQH------SLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEND  155 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHh------cCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCC
Confidence            99999999999999999988874      3456899999999999987777788888888888899999999999   88


Q ss_pred             CHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLI  175 (184)
Q Consensus       163 gv~~~~~~l~~~~  175 (184)
                      ++.++|.++.+.+
T Consensus       156 ~i~~~f~~l~~~~  168 (170)
T cd04115         156 HVEAIFMTLAHKL  168 (170)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999988765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=6.1e-33  Score=190.88  Aligned_cols=167  Identities=35%  Similarity=0.599  Sum_probs=144.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999888877778888777777788888899999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNI  162 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (184)
                      ++|||++++++++.+..|+..+.....   .....+.|+++|+||+|+. .+.....+..+++...++ +++++||++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  157 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYAD---VKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDAT  157 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcc---cccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence            999999999999999999888765311   0224679999999999987 356667778888888874 89999999999


Q ss_pred             CHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARL  174 (184)
Q Consensus       163 gv~~~~~~l~~~  174 (184)
                      |+.++|+++.+.
T Consensus       158 ~v~~~~~~~~~~  169 (170)
T cd04116         158 NVAAAFEEAVRR  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=4.3e-33  Score=190.81  Aligned_cols=162  Identities=30%  Similarity=0.488  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++..+.+...+.++....+ ...+......+.+.+|||||++++..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777665433 444556777788999999999999988888999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+.....    ....+.|+++|+||+|+...+++.......++...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~  156 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKG----NNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQEL  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Confidence            99999999999998887765310    12368999999999999776677777777788888899999999999999999


Q ss_pred             HHHHHHH
Q psy12922        168 FLTLARL  174 (184)
Q Consensus       168 ~~~l~~~  174 (184)
                      |++|...
T Consensus       157 f~~l~~~  163 (165)
T cd04140         157 FQELLNL  163 (165)
T ss_pred             HHHHHhc
Confidence            9998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=6e-33  Score=189.39  Aligned_cols=160  Identities=31%  Similarity=0.548  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++....+...+.++.+.+........++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887776677666666666777888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+...        ..+.|+++|+||+|+...   .......++...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--------~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--------RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKL  149 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999988752        357899999999998532   123345566677899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        168 FLTLARLIREQ  178 (184)
Q Consensus       168 ~~~l~~~~~~~  178 (184)
                      |+.+.+.+.++
T Consensus       150 ~~~l~~~~~~~  160 (161)
T cd04124         150 FQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHhc
Confidence            99999887765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=7e-33  Score=196.75  Aligned_cols=160  Identities=36%  Similarity=0.598  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|+|||||+++|....+.. +.++.+.++....+    ..+.+.+||++|++.|..++..+++.+|++++||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988864 46666655544332    4567999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-------------------CccccHHHHHHHHHh
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-------------------QRAVQTKDAQMLADN  148 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~  148 (184)
                      |++++.+++.+..|+..+..       ....++|+++|+||+|+.+                   .+.+...++..+++.
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~-------~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~  148 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTD-------TANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR  148 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-------hcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence            99999999999988887765       3356799999999999965                   567777888889888


Q ss_pred             cC--------------CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        149 YS--------------LPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       149 ~~--------------~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      .+              ++|+++||++|.||+++|..+.+.+.+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~  193 (220)
T cd04126         149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI  193 (220)
T ss_pred             hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence            76              68999999999999999999998887543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0091|consensus

Probab=100.00  E-value=8.7e-34  Score=184.86  Aligned_cols=170  Identities=40%  Similarity=0.722  Sum_probs=155.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.++.+++|.+-+|||||++.++.+.+..-.+|+.++++....+.. +|..+++++|||+|+++|+....+|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            5689999999999999999999999999999999999999887765 577889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCC-CCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA-SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      +|||.+|.++++++..|..+....      .. +.++-+++|++|+|+..++++...++.+++..+++.|+++||++|.|
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~------~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~N  160 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMA------TQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCN  160 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHh------cCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence            999999999999999999988775      33 45566688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy12922        164 IDEAFLTLARLIREQTRL  181 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~~  181 (184)
                      |++.|..+.+.+...-++
T Consensus       161 VeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  161 VEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999988765443

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1e-32  Score=193.70  Aligned_cols=166  Identities=24%  Similarity=0.324  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhhhcC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAYYRG   79 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~~   79 (184)
                      +||+|+|.+|||||||++++..+.+...+.|+++.++....+..++..+.+.+|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999988888888877776666777888888999999997544321        2344689


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-hcCCCEEEeec
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSC  158 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa  158 (184)
                      +|++++|||++++++++.+..|+..+.....    ....++|+++|+||+|+...+.........++. ..+++++++||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~----~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  156 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRP----AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSA  156 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc----cCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecC
Confidence            9999999999999999999999988876310    124679999999999997655556555666554 56899999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++|.|++++|+.+...+..
T Consensus       157 k~g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         157 KYNWHILLLFKELLISATT  175 (198)
T ss_pred             CCCCCHHHHHHHHHHHhhc
Confidence            9999999999999987664

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=3.3e-32  Score=187.01  Aligned_cols=168  Identities=41%  Similarity=0.719  Sum_probs=146.1

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA   80 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   80 (184)
                      |++....++|+++|++|||||||++++..+.+...+.++.+.++....+.+.+....+.+||+||+..+...+..++..+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            66666779999999999999999999998887777777777778777888888888899999999999998888999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |++++|+|++++++++.+..|+..+..       ....+.|+++|+||+|+.+.+.+.......+.....++++++||++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~-------~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  153 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQ-------YANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKE  153 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence            999999999999999999999988876       3455799999999999977666666666677777778999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLI  175 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~  175 (184)
                      |.|++++|++|.+.+
T Consensus       154 ~~gv~~l~~~i~~~~  168 (169)
T cd04114         154 SDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=8.1e-33  Score=193.34  Aligned_cols=163  Identities=31%  Similarity=0.499  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      .||+++|.+|||||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            37999999999999999999999988777787765543 45556787888999999999999999888999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------ccHHHHHHHHHhcC-CCE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNYS-LPF  153 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~-~~~  153 (184)
                      |++++++++.+. .|+..+...        ..+.|+++|+||+|+.+.+.            +...+...++...+ +++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~--------~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  151 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH--------CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY  151 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence            999999999886 588887752        35799999999999965432            34455677777776 689


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      +++||++|.|++++|.++.+.+...+
T Consensus       152 ~e~SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         152 LECSAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             EEccCCcCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999999887544

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2.2e-32  Score=186.35  Aligned_cols=161  Identities=36%  Similarity=0.673  Sum_probs=141.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|+|||||++++.+..+...+.++.+..+....+...+....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887777777776777777777777788999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++++++.+..|+..+...       ...++|+++|+||+|+............+++...+++++++|+++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~-------~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~  153 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQM-------RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEEL  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999888773       3448999999999999866666667777788888999999999999999999


Q ss_pred             HHHHHHHH
Q psy12922        168 FLTLARLI  175 (184)
Q Consensus       168 ~~~l~~~~  175 (184)
                      ++++.+.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04123         154 FLSLAKRM  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1e-32  Score=190.37  Aligned_cols=158  Identities=25%  Similarity=0.467  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||+.++..+.+...+.++.. +.....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999988888888875 444455667888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF  153 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  153 (184)
                      |++++++++.+. .|+..+...        .++.|+++|+||+|+.+.            +.+...++..++...++ ++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--------~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  152 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  152 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence            999999999985 577777652        357999999999999542            24667778889988885 89


Q ss_pred             EEeecCCCCCHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ++|||++|.|++++|+.+.+.
T Consensus       153 ~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         153 LECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             EEecccccCCHHHHHHHHHHh
Confidence            999999999999999998763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0095|consensus

Probab=100.00  E-value=3.1e-33  Score=179.87  Aligned_cols=175  Identities=39%  Similarity=0.683  Sum_probs=163.4

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA   80 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   80 (184)
                      |+..+.-+||+++|+.|+|||.|+++++.+-++.....+.++++..+++.+.+..++++||||+|+++|+....+|++.+
T Consensus         1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa   80 (213)
T KOG0095|consen    1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (213)
T ss_pred             CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence            67788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      +++|+|||++...++.-+.+|+.++..+       .+.++.-++|+||.|+.+.++++.....+++......|.++||++
T Consensus        81 halilvydiscqpsfdclpewlreie~y-------an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsake  153 (213)
T KOG0095|consen   81 HALILVYDISCQPSFDCLPEWLREIEQY-------ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKE  153 (213)
T ss_pred             ceEEEEEecccCcchhhhHHHHHHHHHH-------hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccc
Confidence            9999999999999999999999999984       467788899999999999999999999999999889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhh
Q psy12922        161 NINIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~~~~  182 (184)
                      -.+++.+|..+.-.+....+.+
T Consensus       154 a~nve~lf~~~a~rli~~ar~~  175 (213)
T KOG0095|consen  154 ADNVEKLFLDLACRLISEARQN  175 (213)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhc
Confidence            9999999999888777655443

>KOG0086|consensus

Probab=100.00  E-value=4.4e-33  Score=179.81  Aligned_cols=168  Identities=42%  Similarity=0.766  Sum_probs=159.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++-+|++++|+.|+|||.|++++....+.++...+.++++..+.+...++.++++||||+|+++|+.+...|++.+.+.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            36678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|||+++.++++.+..|+...+.       ..++++-+++++||.|+..++++...++..++....+.+.++||++|+|
T Consensus        86 lLVYD~TsrdsfnaLtnWL~DaR~-------lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN  158 (214)
T KOG0086|consen   86 LLVYDITSRDSFNALTNWLTDART-------LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN  158 (214)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHh-------hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence            999999999999999999999988       6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQ  178 (184)
Q Consensus       164 v~~~~~~l~~~~~~~  178 (184)
                      +++.|-...+.+...
T Consensus       159 VEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  159 VEEAFLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888777653

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.1e-32  Score=194.44  Aligned_cols=162  Identities=23%  Similarity=0.467  Sum_probs=139.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+|+|.+|||||||+++|....+...+.|+.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++++|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999999998888998876554 5667889999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-C
Q psy12922         87 YDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-P  152 (184)
Q Consensus        87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~  152 (184)
                      ||++++++++.+. .|...+..        ..++.|++||+||+|+...            ..+...+...+++..++ +
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~--------~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~  151 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQE--------FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS  151 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCE
Confidence            9999999999984 56665544        3468999999999999542            12556678899999996 8


Q ss_pred             EEEeecCCCCC-HHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNIN-IDEAFLTLARLIRE  177 (184)
Q Consensus       153 ~~~~Sa~~~~g-v~~~~~~l~~~~~~  177 (184)
                      |++|||+++.+ |+++|+........
T Consensus       152 y~E~SAk~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         152 YVECSSRSSERSVRDVFHVATVASLG  177 (222)
T ss_pred             EEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence            99999999985 99999998887654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=5.2e-32  Score=189.93  Aligned_cols=163  Identities=34%  Similarity=0.615  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +||+++|.+|+|||||++++..+.+.. .+.++.+..+....+..++..+.+.+||++|.+++..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5777777777777788889888999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC----ccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ----RAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      ||++++.+++.+..|+..+...        ..+.|+++|+||+|+...    +.+...+...++...+++++++||++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--------EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--------CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            9999999999999999888752        357999999999998532    3344456677788888999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIREQ  178 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~  178 (184)
                      |+++++++|.+.+...
T Consensus       153 gv~~l~~~i~~~~~~~  168 (193)
T cd04118         153 NVDELFQKVAEDFVSR  168 (193)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=4.5e-32  Score=184.92  Aligned_cols=160  Identities=44%  Similarity=0.765  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.+..+.....++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777888887777777777887888999999999999988899999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+..+      ....+.|+++|+||+|+.. ......+...++...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~------~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  153 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETY------STNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQA  153 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHh------CCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence            999999999999999888775      3467899999999999974 344556677788888999999999999999999


Q ss_pred             HHHHHHH
Q psy12922        168 FLTLARL  174 (184)
Q Consensus       168 ~~~l~~~  174 (184)
                      ++++.+.
T Consensus       154 ~~~~~~~  160 (161)
T cd01863         154 FEELVEK  160 (161)
T ss_pred             HHHHHHh
Confidence            9998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=4.7e-32  Score=186.18  Aligned_cols=163  Identities=34%  Similarity=0.612  Sum_probs=140.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++.|..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            4799999999999999999999988877777777644 345666788888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCCHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINID  165 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  165 (184)
                      +|++++++++....|...+...      ....+.|+++++||.|+...+.........++...+ ++++++||++|.|++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~------~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~  153 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRI------KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD  153 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence            9999999999999998888763      335689999999999997766666667777777777 799999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      ++|.++...+.
T Consensus       154 ~~f~~i~~~~~  164 (168)
T cd04177         154 EVFIDLVRQII  164 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4.1e-32  Score=185.66  Aligned_cols=160  Identities=33%  Similarity=0.574  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC--cCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +||+++|.+|||||||++++...  .+...+.++.+.++....+..+ +....+.+||+||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5777888888877776666554 56688999999999999998999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++++++.+..|+..+...        ..+.|+++|+||+|+....+........+....+++++++||++|.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  152 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTA--------SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY  152 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence            999999999999999999988863        257999999999999766666666666777778899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        165 DEAFLTLARLI  175 (184)
Q Consensus       165 ~~~~~~l~~~~  175 (184)
                      ++++++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (164)
T cd04101         153 EEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3.5e-32  Score=189.88  Aligned_cols=164  Identities=27%  Similarity=0.476  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +||+++|.+|||||||++++.++.+...+.++.+..+... +... +..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999998878878777665443 4444 6778899999999999999998999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC----ccccHHHHHHHHHhcCC-CEEEeecCC
Q psy12922         87 YDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ----RAVQTKDAQMLADNYSL-PFYEVSCKQ  160 (184)
Q Consensus        87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (184)
                      ||++++++++.+. .|+..+...        .++.|+++|+||.|+...    +.+...+..+++...++ +++++||++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  151 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF--------CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKT  151 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCC
Confidence            9999999999986 477766542        467999999999998653    24566778888888888 899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy12922        161 NINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~~  180 (184)
                      |.|++++|.++.+.+.....
T Consensus       152 ~~~v~~~f~~l~~~~~~~~~  171 (187)
T cd04132         152 MENVEEVFDTAIEEALKKEG  171 (187)
T ss_pred             CCCHHHHHHHHHHHHHhhhh
Confidence            99999999999998887553

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=7.4e-32  Score=185.68  Aligned_cols=168  Identities=42%  Similarity=0.703  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777788887887777888888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCCHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDE  166 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~  166 (184)
                      |++++.+++....|...+.....   .....++|+++|+||+|+.............+....+ ++++++||++|.|+++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  157 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQAS---PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQ  157 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---ccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHH
Confidence            99999999888888877655310   0223479999999999998655566666777777776 7999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        167 AFLTLARLIREQ  178 (184)
Q Consensus       167 ~~~~l~~~~~~~  178 (184)
                      +++++.+.+.+.
T Consensus       158 l~~~i~~~~~~~  169 (172)
T cd01862         158 AFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=9.6e-32  Score=191.00  Aligned_cols=168  Identities=43%  Similarity=0.681  Sum_probs=143.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+|+|.+|||||||+++|....+. .+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            55789999999999999999999988763 56777777777777778888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHH-HHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         85 LMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      +|||++++++++.+.. |...+...      ....+.|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~------~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~  164 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELY------STNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN  164 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999876 55555442      2245689999999999987666777777788888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQT  179 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~  179 (184)
                      ++++|++|.+.+.+..
T Consensus       165 v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        165 VEQCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999887644

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.3e-32  Score=189.57  Aligned_cols=156  Identities=32%  Similarity=0.627  Sum_probs=137.8

Q ss_pred             EcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh
Q psy12922         13 LGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL   92 (184)
Q Consensus        13 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   92 (184)
                      +|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888878888888888888888888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHH
Q psy12922         93 ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA  172 (184)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  172 (184)
                      .++..+..|+..+...        ..++|+++|+||+|+.. +.+... ...++...++.+++|||++|.|++++|.+|.
T Consensus        81 ~S~~~i~~w~~~i~~~--------~~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       81 VTYKNVPNWHRDLVRV--------CENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             HHHHHHHHHHHHHHHh--------CCCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999863        35899999999999864 233333 3467778889999999999999999999999


Q ss_pred             HHHHHH
Q psy12922        173 RLIREQ  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      +.+...
T Consensus       151 ~~i~~~  156 (200)
T smart00176      151 RKLIGD  156 (200)
T ss_pred             HHHHhc
Confidence            988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=1.1e-31  Score=191.61  Aligned_cols=164  Identities=24%  Similarity=0.353  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc-CCcEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR-GAMGILL   85 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~~i~   85 (184)
                      +||+++|.+|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||+||++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999887775 55566655567777777888888999999999872  23345566 8999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |||++++.+++....|+..+...      ....+.|+++|+||+|+...+.+.......++...+++++++||++|.|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~  152 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRN------RQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVD  152 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence            99999999999999999888763      234689999999999998777777777778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        166 EAFLTLARLIREQT  179 (184)
Q Consensus       166 ~~~~~l~~~~~~~~  179 (184)
                      ++|+++.+.+...+
T Consensus       153 ~l~~~l~~~~~~~~  166 (221)
T cd04148         153 ELLEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=8.6e-32  Score=194.55  Aligned_cols=167  Identities=31%  Similarity=0.488  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++..+.+...+.++.+ ++....+.+++..+.+.||||+|++.|..++..++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988777777776 666677778888899999999999999888888889999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhccc--CCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-cCCCEEEeecCCCCCH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCN--SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-YSLPFYEVSCKQNINI  164 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv  164 (184)
                      |++++++++.+..|+..+......  .......+.|+++|+||+|+...+++...+..+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653100  0001345799999999999976566677777666553 4688999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        165 DEAFLTLARLI  175 (184)
Q Consensus       165 ~~~~~~l~~~~  175 (184)
                      +++|++|.+.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=7.8e-32  Score=186.02  Aligned_cols=158  Identities=25%  Similarity=0.528  Sum_probs=135.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV   89 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   89 (184)
                      |+|+|.+|||||||++++..+.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999988777777765444 34566788888999999999999999999999999999999999


Q ss_pred             CChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcCC-CEEE
Q psy12922         90 TNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYSL-PFYE  155 (184)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~  155 (184)
                      +++++++.+. .|+..+...        .++.|+++|+||+|+....            .+...+...++...++ ++++
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHF--------CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLE  151 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEE
Confidence            9999999985 588877652        3689999999999986522            2566677888888886 8999


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +||++|.|++++|+.+.+.+.
T Consensus       152 ~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      152 CSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             ecCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999988764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.2e-31  Score=182.15  Aligned_cols=154  Identities=19%  Similarity=0.380  Sum_probs=128.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++..+.+...+.++ ...+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988876655443 3333 46677888888899999999965     34668899999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHHhc-CCCEEEeecCCCCCH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLADNY-SLPFYEVSCKQNINI  164 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv  164 (184)
                      |++++++++.+..|+..+...      ....+.|+++|+||+|+.  ..+++...+...+++.. +++|++|||++|.|+
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~------~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i  147 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSY------RNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV  147 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence            999999999999999999874      334679999999999985  35677777788888776 589999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        165 DEAFLTLARL  174 (184)
Q Consensus       165 ~~~~~~l~~~  174 (184)
                      +++|.++.+.
T Consensus       148 ~~~f~~~~~~  157 (158)
T cd04103         148 ERVFQEAAQK  157 (158)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.2e-31  Score=184.23  Aligned_cols=162  Identities=19%  Similarity=0.239  Sum_probs=138.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ..+||+++|.+|||||||++++..+.+. ..+.++.+..+....+.+++....+.+||++|++.+...+..++..+|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4589999999999999999999999987 888888888887777778888888999999999999888888899999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNIN  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  163 (184)
                      +|+|++++.+++.+..|+..+..         ..++|+++|+||+|+.+.+........+++...++ .++++||++|.|
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~---------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM---------LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS  153 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc---------CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence            99999999999988888876532         24799999999999965444333345667777777 469999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIR  176 (184)
Q Consensus       164 v~~~~~~l~~~~~  176 (184)
                      ++++|+.+.+.+.
T Consensus       154 v~~lf~~l~~~~~  166 (169)
T cd01892         154 SNELFTKLATAAQ  166 (169)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.1e-31  Score=183.77  Aligned_cols=162  Identities=30%  Similarity=0.478  Sum_probs=134.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccchHhhhcCCcEEEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~v~   87 (184)
                      ||+++|++|||||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877666666654333 45566788888899999999885 3445677889999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC-CCHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDE  166 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gv~~  166 (184)
                      |++++.+++.+..|+..+....     ....+.|+++|+||+|+...+.+...+...++...+++++++||++| .|+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIK-----KRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-----cCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence            9999999999999988887631     12468999999999999776677777788888888999999999999 59999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|.++.+.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=3.8e-31  Score=180.70  Aligned_cols=162  Identities=33%  Similarity=0.574  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++....+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999988877766666533 3455567888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.++.....|+..+...      ....+.|+++|+||+|+.............++..++++++++||++|.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~------~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  153 (164)
T cd04139          80 SITDMESFTATAEFREQILRV------KDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHH
Confidence            999999999999988888774      23568999999999999764555666677788888899999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        168 FLTLARLIR  176 (184)
Q Consensus       168 ~~~l~~~~~  176 (184)
                      |+++.+.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T cd04139         154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHH
Confidence            999988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.2e-31  Score=187.83  Aligned_cols=158  Identities=26%  Similarity=0.457  Sum_probs=127.2

Q ss_pred             eeEEEEEcCCCCchHHHHH-HHhhCc-----CCCccccccce-eEEEEE--------EEeCCeeEEEEEEeCCCcccccc
Q psy12922          7 TYKILVLGDSNVGKTCIVH-RFCDET-----YYDTYISTIGI-DFKQKI--------IDLDDVPTKLQIWDTAGQERFRT   71 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~   71 (184)
                      .+||+++|.+|+|||||+. ++.+..     +...+.|+.+. +.....        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            5899999999999999995 555433     34556677642 222211        246788899999999998753  


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-----------------
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-----------------  133 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----------------  133 (184)
                      ....+++++|++++|||++++.+++.+. .|+..+...        .++.|+++|+||+|+.+                 
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--------~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~  151 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--------CPRVPVILVGCKLDLRYADLDEVNRARRPLARPI  151 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--------CCCCCEEEEEEchhccccccchhhhccccccccc
Confidence            3456789999999999999999999997 588887652        35789999999999864                 


Q ss_pred             --CccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        134 --QRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                        .+.+...++..+++..+++|++|||++|.||+++|+.+.+.
T Consensus       152 ~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         152 KNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence              36778889999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=100.00  E-value=3e-31  Score=179.87  Aligned_cols=158  Identities=51%  Similarity=0.875  Sum_probs=142.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||+||...+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988777888888888888888888888999999999999889999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++++++.+..|+..+..       ......|+++++||+|+.........+...++...+++++++||+++.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~-------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  153 (159)
T cd00154          81 DITNRESFENLDKWLKELKE-------YAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence            99999999999999998887       33468999999999999755666777788888888899999999999999999


Q ss_pred             HHHHH
Q psy12922        168 FLTLA  172 (184)
Q Consensus       168 ~~~l~  172 (184)
                      +++|.
T Consensus       154 ~~~i~  158 (159)
T cd00154         154 FQSLA  158 (159)
T ss_pred             HHHHh
Confidence            99886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=3.6e-31  Score=182.62  Aligned_cols=157  Identities=30%  Similarity=0.504  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999888777777653 555556777888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcCC-CE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYSL-PF  153 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  153 (184)
                      |++++++++.+. .|+..+...        ..+.|+++|+||+|+..            .+.+...+...++...++ .+
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~  151 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH--------NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY  151 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeE
Confidence            999999999885 677777652        35799999999999853            345677778888988887 89


Q ss_pred             EEeecCCCCCHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      +++||++|.|++++|+.++-
T Consensus       152 ~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         152 IECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             EEEeCCCCCCHHHHHHHHHh
Confidence            99999999999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0088|consensus

Probab=100.00  E-value=1.3e-32  Score=178.54  Aligned_cols=171  Identities=34%  Similarity=0.637  Sum_probs=159.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....+||+++|..-+|||||+-++....|......+..-.+..+.+.+.+....+.||||+|+++|.++-..|++.+|++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            35679999999999999999999999999888888877788888888999888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|||+++.++|+.++.|..++..       ..+..+-+++|+||.|+..++.+..+++...+...|+.++++||+++.|
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~-------mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G  162 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRT-------MLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG  162 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHH-------HhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence            999999999999999999999998       6788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy12922        164 IDEAFLTLARLIREQTRL  181 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~~  181 (184)
                      +.++|+.|.+.+.++.+.
T Consensus       163 i~elFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999988876543

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1e-30  Score=180.47  Aligned_cols=159  Identities=26%  Similarity=0.468  Sum_probs=134.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999888766666655 334445667888888999999999999999989999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF  153 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  153 (184)
                      |++++.+++... .|+..+..       . ..+.|+++|+||+|+.+.            ..+...++..+++..++ ++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~-------~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  151 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKE-------Y-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY  151 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-------h-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence            999999999885 57777664       2 578999999999998542            24556677888888886 79


Q ss_pred             EEeecCCCCCHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +++||++|.|++++|+.+.+.+
T Consensus       152 ~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         152 VECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             EEecCCcCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00876 Ras Ras family

Probab=99.98  E-value=1.3e-30  Score=177.26  Aligned_cols=159  Identities=39%  Similarity=0.617  Sum_probs=138.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|++|||||||++++....+...+.++.. +.....+...+..+.+.+||+||...+...+..+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877777667666 5555666677777889999999999988888899999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  168 (184)
                      +++++++.....|+..+...      .....+|+++|+||+|+...+......+..++...+++++++|++++.|+++++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876          80 ITDRESFEEIKGYREQILRV------KDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVF  153 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Confidence            99999999999998888874      223689999999999998766777778888888888999999999999999999


Q ss_pred             HHHHHH
Q psy12922        169 LTLARL  174 (184)
Q Consensus       169 ~~l~~~  174 (184)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T cd00876         154 KLLVRE  159 (160)
T ss_pred             HHHHhh
Confidence            999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.98  E-value=7.8e-31  Score=182.44  Aligned_cols=163  Identities=21%  Similarity=0.365  Sum_probs=127.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++....+.+|||||++++...+..+++.+|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998777543 566665555544433 345678999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH------hcCCCEEEeec
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD------NYSLPFYEVSC  158 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa  158 (184)
                      +|+|++++++++....|+..+...      ....+.|+++|+||+|+...  ........+..      ..+++++++||
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~------~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA  152 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRF------SENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACA  152 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhh------hhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeec
Confidence            999999999998888888777653      23457999999999998642  22233333322      11356889999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++|.|+++++++|.+.+.+
T Consensus       153 ~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         153 IIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             ccCCCHHHHHHHHHHHHHH
Confidence            9999999999999988865

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.98  E-value=2.2e-30  Score=179.77  Aligned_cols=165  Identities=36%  Similarity=0.546  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      .||+++|.+|+|||||+++++...+...+.++....+ ...+...+..+.+.+||+||+.++...+..++..++++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887766666665443 344556777788999999999999988899999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |.++..+++.+..|+..+...      ....+.|+++|+||+|+...+.....+...++...+++++++||+++.|+.++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  154 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDM------LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEA  154 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999988888774      33467899999999999766666666677778888899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        168 FLTLARLIREQT  179 (184)
Q Consensus       168 ~~~l~~~~~~~~  179 (184)
                      ++++.+.+...+
T Consensus       155 ~~~l~~~~~~~~  166 (180)
T cd04137         155 FELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0081|consensus

Probab=99.98  E-value=1.4e-32  Score=178.50  Aligned_cols=170  Identities=41%  Similarity=0.709  Sum_probs=156.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC---------eeEEEEEEeCCCccccccchHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD---------VPTKLQIWDTAGQERFRTLTTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~D~~G~~~~~~~~~~   75 (184)
                      ++-++.+.+|.+|+||||++-+++...+......+.++++..+.+.+..         ..+.+++|||+|+++|+.+...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            4556889999999999999999999999999999999999888876632         3466899999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      |++.+-++++++|+++..++.+...|+.++..+      ..+.++-+++++||+|+.++++++.+++..++.++++|||+
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h------AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE  160 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH------AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE  160 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHh------hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence            999999999999999999999999999999987      67888999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        156 VSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      +||-+|.||+..++.+...++++-+
T Consensus       161 TSA~tg~Nv~kave~LldlvM~Rie  185 (219)
T KOG0081|consen  161 TSACTGTNVEKAVELLLDLVMKRIE  185 (219)
T ss_pred             eccccCcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887544

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=8.3e-31  Score=179.91  Aligned_cols=156  Identities=22%  Similarity=0.355  Sum_probs=121.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|.+|||||||++++....+. .+.|+.+.++.  .+..  ..+.+.+||+||++++...+..+++.+|+++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999887664 34566665543  2222  3567999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  159 (184)
                      +|+|++++.+++....++..+...      ....++|++||+||+|+...  ....++.....     ...++++++||+
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk  153 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIIND------REMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCAT  153 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcC------HhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCC
Confidence            999999999998888777766542      22357899999999998652  33344444332     123468999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLAR  173 (184)
Q Consensus       160 ~~~gv~~~~~~l~~  173 (184)
                      +|.|++++|.||.+
T Consensus       154 ~g~gv~~~~~~l~~  167 (168)
T cd04149         154 SGDGLYEGLTWLSS  167 (168)
T ss_pred             CCCChHHHHHHHhc
Confidence            99999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.1e-30  Score=181.28  Aligned_cols=160  Identities=19%  Similarity=0.292  Sum_probs=123.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++.+||+++|.+|||||||++++..+.+. .+.|+.+..+.  .+..  ..+.+.+||+||++++..++..+++.+|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999887764 45666665443  2333  3466999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-----CCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-----SLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~  159 (184)
                      +|+|+++++++.....++..+...      ....++|++||+||+|+.+..  ...+..+.....     .+.++++||+
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~------~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~  161 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNE------DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcC------HhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCC
Confidence            999999999998888777766542      233579999999999987633  222222222111     1235689999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      +|+|++++|+||.+.+.+
T Consensus       162 ~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        162 SGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999887754

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=4.3e-31  Score=182.49  Aligned_cols=158  Identities=20%  Similarity=0.319  Sum_probs=121.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.+||+++|.+|||||||++++..+.+. .+.|+.+..+..  +..  ..+.+.+||+||++.+...+..+++.+|+++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999999877663 456666655442  333  3467999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|+|++++++++....++..+...      ....+.|++||+||+|+.+..  ...+.....     ....+.++++||+
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~  157 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNE------DELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCAT  157 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhC------HhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCC
Confidence            999999999999988888777542      223578999999999986532  222222211     1123356789999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLI  175 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~  175 (184)
                      +|.|++++|+||.+.+
T Consensus       158 ~g~gv~e~~~~l~~~~  173 (175)
T smart00177      158 SGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0395|consensus

Probab=99.97  E-value=2.4e-30  Score=180.33  Aligned_cols=165  Identities=36%  Similarity=0.567  Sum_probs=153.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..+||+++|.+|+|||+|..++....+...+.|+.. +.+.+.+.+++..+.+.|+||+|+.++..+...+++..+++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999999 7777888899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      ||+++++.+|+.+..+++++...      .....+|+++|+||+|+...+.+...+...++..++|+|+++||+.+.+++
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~------~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~  154 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRV------KGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVD  154 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh------hCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHH
Confidence            99999999999999999999553      445668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        166 EAFLTLARLIRE  177 (184)
Q Consensus       166 ~~~~~l~~~~~~  177 (184)
                      ++|..|...+..
T Consensus       155 ~~F~~L~r~~~~  166 (196)
T KOG0395|consen  155 EVFYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>KOG0097|consensus

Probab=99.97  E-value=2.1e-30  Score=165.60  Aligned_cols=166  Identities=40%  Similarity=0.780  Sum_probs=156.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+-+|-+++|.-|+|||.|++.++...+..+...+.++++....+...+....+++|||+|+++|+.+..++++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||++...++.++..|+.....       ..+++..+++++||.|+..++.+...+..+++...+..|.++||++|.++
T Consensus        89 mvyditrrstynhlsswl~dar~-------ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nv  161 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARN-------LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNV  161 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhc-------cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence            99999999999999999988877       78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIRE  177 (184)
Q Consensus       165 ~~~~~~l~~~~~~  177 (184)
                      ++.|-...+.+..
T Consensus       162 edafle~akkiyq  174 (215)
T KOG0097|consen  162 EDAFLETAKKIYQ  174 (215)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998877776654

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=9.4e-30  Score=179.11  Aligned_cols=161  Identities=30%  Similarity=0.455  Sum_probs=132.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|.+|||||||++++....+...+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888766666654 4455566677777889999999999998888889999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-CccccHHHHHHHHH-hcCCCEEEeecCCCCCHHH
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-QRAVQTKDAQMLAD-NYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ++++.+++.+..|+..+...      ....+.|+++|+||+|+.. .+........+... ..+++++++||++|.|+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  153 (198)
T cd04147          80 VDDPESFEEVERLREEILEV------KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLE  153 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHH
Confidence            99999999999998888774      3346799999999999865 34444444443333 4567899999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|++|.+.+.
T Consensus       154 l~~~l~~~~~  163 (198)
T cd04147         154 VFKELLRQAN  163 (198)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=5.2e-30  Score=176.17  Aligned_cols=158  Identities=20%  Similarity=0.355  Sum_probs=124.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|.+|||||||++++....+. .+.++.+..+.  .+..  ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999998664 35666654443  2333  34669999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc------CCCEEEeecCCCC
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY------SLPFYEVSCKQNI  162 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~  162 (184)
                      ++++.++.....|+..+...      ....+.|+++|+||+|+.+  .....+...+....      .+.++++||++|.
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  147 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTE------KELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM  147 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcC------hhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence            99999999998888888652      2234689999999999964  34445455544322      2367899999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIREQT  179 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~  179 (184)
                      |++++|+||.+.+.+..
T Consensus       148 gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         148 GLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CHHHHHHHHHHHHhhcc
Confidence            99999999998876643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.2e-29  Score=175.28  Aligned_cols=159  Identities=26%  Similarity=0.542  Sum_probs=131.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      .||+++|++|||||||++++....+...+.++....+. ..+.+++..+.+.+|||||++.+...+..++.++|++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            68999999999999999999999887777777764443 45567788888999999999998888888889999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF  153 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  153 (184)
                      |++++++++.+. .|...+...        ..+.|+++|+||+|+...            ..+...+..+++...+. ++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~  152 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY  152 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEE
Confidence            999999998885 577766542        357899999999998542            22344566777777765 79


Q ss_pred             EEeecCCCCCHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +++||++|.|++++|+++.+.+
T Consensus       153 ~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         153 MECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EEeccccCcCHHHHHHHHHHHh
Confidence            9999999999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.1e-30  Score=177.74  Aligned_cols=153  Identities=21%  Similarity=0.342  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++..+.+. .+.|+.+..+.  .+..  ..+.+.+||+||++++...+..+++.+|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999887775 45666665443  2333  3566999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHH----HhcCCCEEEeecCCCC
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLA----DNYSLPFYEVSCKQNI  162 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~  162 (184)
                      |+++++++.....++..+...      ....+.|+++++||+|+.+..  ...+. ..+.    ....+.++++||++|.
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~  147 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNE------DELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGD  147 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhc------HHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence            999999999988877776542      223568999999999986532  22222 1121    1223457799999999


Q ss_pred             CHHHHHHHHHH
Q psy12922        163 NIDEAFLTLAR  173 (184)
Q Consensus       163 gv~~~~~~l~~  173 (184)
                      |++++|+||.+
T Consensus       148 gv~~~~~~l~~  158 (159)
T cd04150         148 GLYEGLDWLSN  158 (159)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=9.9e-31  Score=178.88  Aligned_cols=153  Identities=21%  Similarity=0.358  Sum_probs=125.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      .|+++|.+|||||||++++.+..+...+.|+.+...    ..++...+.+.+||+||++++...+..+++.+|++++|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            479999999999999999999877777777776543    2244456779999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH----HHHHHHHHhcCCCEEEeecCC----
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT----KDAQMLADNYSLPFYEVSCKQ----  160 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~----  160 (184)
                      .+++.++...+.|+..+...        .+++|+++|+||.|+...+....    ..+..++...+++++++||++    
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~--------~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~  148 (164)
T cd04162          77 SADSERLPLARQELHQLLQH--------PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSP  148 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhC--------CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCCh
Confidence            99999998888888887642        36899999999999976554332    234556666788899998888    


Q ss_pred             --CCCHHHHHHHHHH
Q psy12922        161 --NINIDEAFLTLAR  173 (184)
Q Consensus       161 --~~gv~~~~~~l~~  173 (184)
                        ++||+++|+.++.
T Consensus       149 ~~~~~v~~~~~~~~~  163 (164)
T cd04162         149 SRMEAVKDLLSQLIN  163 (164)
T ss_pred             hHHHHHHHHHHHHhc
Confidence              9999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=2e-29  Score=175.90  Aligned_cols=165  Identities=25%  Similarity=0.463  Sum_probs=134.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +.||+++|++|+|||||++++..+.+...+.++....+ ...+..++....+.+||++|++.+......++..+|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            36899999999999999999998877666666655443 34556677778899999999988887777778999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC----------CccccHHHHHHHHHhcCC-CEE
Q psy12922         87 YDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT----------QRAVQTKDAQMLADNYSL-PFY  154 (184)
Q Consensus        87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~  154 (184)
                      +|++++++++.+. .|+..+...        .++.|+++|+||+|+.+          .+.........+++..++ +++
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~--------~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRY--------CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM  151 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence            9999999999986 588888652        35699999999999853          234455667788888885 899


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        155 EVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      ++||++|.|++++|+++.+.+...+.
T Consensus       152 e~Sa~~~~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         152 ECSALTGEGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             EccCCCCCCHHHHHHHHHHHHhcccC
Confidence            99999999999999999987765443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=7.4e-30  Score=176.08  Aligned_cols=157  Identities=20%  Similarity=0.315  Sum_probs=122.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....++|+++|++|||||||++++....+ ....++.+.  ....+..+  .+.+.+||+||++.+...+..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            45679999999999999999999998754 344555543  33344444  45699999999998888888999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeec
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSC  158 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  158 (184)
                      ++|+|++++.++.....|+..+...      ....+.|+++|+||+|+.+..  .......+..     ..+++++++||
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQE------ERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSA  157 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccC
Confidence            9999999999998888887777542      234689999999999987532  3333333332     23568999999


Q ss_pred             CCCCCHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLAR  173 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~  173 (184)
                      ++|.|++++|+++.+
T Consensus       158 ~~g~gi~~l~~~l~~  172 (173)
T cd04154         158 VTGEGLLQGIDWLVD  172 (173)
T ss_pred             CCCcCHHHHHHHHhc
Confidence            999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.2e-29  Score=176.17  Aligned_cols=160  Identities=21%  Similarity=0.319  Sum_probs=122.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+++||+++|++|||||||++++..+.+.. +.|+.+..+.  .+..  ..+.+.+||+||++.+...+..+++.+|+++
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456899999999999999999998877753 5566665443  2333  3467999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|+|+++++++.....++..+...      ....++|++||+||.|+.+..  ...+.....     ....+.++++||+
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~  161 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSE------DELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCAT  161 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhC------HhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCC
Confidence            999999999998888777766542      223578999999999986522  222221111     1112356789999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      +|.|++++|+||.+.+..
T Consensus       162 tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        162 TAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987654

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=3.3e-29  Score=172.29  Aligned_cols=157  Identities=27%  Similarity=0.526  Sum_probs=129.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||+++|.+..+...+.++.. +........++..+.+++||+||+..+......+++.+|++++|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999888666666665 334445567788889999999999988888888889999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc-----------cccHHHHHHHHHhcCC-CEE
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR-----------AVQTKDAQMLADNYSL-PFY  154 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~  154 (184)
                      |++++.++.... .|+..+...        ..+.|+++|+||+|+....           .+.......++...++ +++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  151 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHY--------CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM  151 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence            999998887765 466666652        3489999999999986543           2345667778888887 999


Q ss_pred             EeecCCCCCHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~  173 (184)
                      ++||++|.|+++++++|.+
T Consensus       152 ~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         152 ECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             EeecCCCCCHHHHHHHHhh
Confidence            9999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.4e-28  Score=175.20  Aligned_cols=168  Identities=32%  Similarity=0.579  Sum_probs=143.4

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      ......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+.++...+..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34567799999999999999999988888888888888888888877777888899999999999999888889999999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      ++++|+|+++..++..+..|+..+...        ..+.|+++++||+|+.+. .... ....++...++.++++||++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~  153 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRV--------CENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSN  153 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCC
Confidence            999999999999999999999988763        357899999999998643 2222 233566677889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIREQT  179 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~  179 (184)
                      .|+++.|.+|.+.+....
T Consensus       154 ~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        154 YNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             CCHHHHHHHHHHHHhhcc
Confidence            999999999999887543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=2.3e-28  Score=168.68  Aligned_cols=160  Identities=27%  Similarity=0.409  Sum_probs=126.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ...++++|+++|..||||||+++++..+... ...||.+..  ...+.+.+  +.+.+||.+|+..++..|..+++.+|+
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence            3478899999999999999999999986643 355665544  44454555  459999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH------hcCCCEEEe
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD------NYSLPFYEV  156 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~  156 (184)
                      +|||+|.++++.+.+....+..+...      ....++|+++++||.|+.+.  ....+......      ...+.++.|
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~------~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~  156 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLND------PELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSC  156 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTS------GGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred             eEEEEecccceeecccccchhhhcch------hhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEee
Confidence            99999999998888888877777664      33468999999999998753  33333332221      234568899


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~  175 (184)
                      ||.+|+|+.+.++||.+++
T Consensus       157 sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  157 SAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             BTTTTBTHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHhcC
Confidence            9999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0083|consensus

Probab=99.97  E-value=6.1e-31  Score=166.31  Aligned_cols=161  Identities=48%  Similarity=0.853  Sum_probs=148.0

Q ss_pred             EEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeC
Q psy12922         11 LVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV   89 (184)
Q Consensus        11 ~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   89 (184)
                      +++|.+++|||.|+-++..+.+ .....++.++++..+.+..++..+.+++|||+|+++|+++...|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            3689999999999988888776 445677889999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHH
Q psy12922         90 TNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFL  169 (184)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  169 (184)
                      .+..+++..+.|+.++..++       ...+.+.+++||+|+..++.+..++..+++...++||.++||++|-+++..|-
T Consensus        81 ankasfdn~~~wlsei~ey~-------k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~  153 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYA-------KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFL  153 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHH-------HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHH
Confidence            99999999999999999853       45788999999999999899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        170 TLARLIREQ  178 (184)
Q Consensus       170 ~l~~~~~~~  178 (184)
                      .|.+.+...
T Consensus       154 ~ia~~l~k~  162 (192)
T KOG0083|consen  154 AIAEELKKL  162 (192)
T ss_pred             HHHHHHHHh
Confidence            999887654

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=3.6e-29  Score=172.75  Aligned_cols=156  Identities=22%  Similarity=0.320  Sum_probs=119.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|++|+|||||++++..+.+.. ..++.+..+.  .+..+  ...+.+||+||+..+...+..+++.+|+++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            356899999999999999999999877653 4555554443  23333  456999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHH----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLA----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~  159 (184)
                      +|+|+++++++.....++..+...      ....++|+++++||+|+...  ....+. ..+.    ...+++++++||+
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~------~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~  159 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAH------EDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCAL  159 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhc------hhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccC
Confidence            999999998888887777766542      22357999999999998652  222222 1121    2335678999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLAR  173 (184)
Q Consensus       160 ~~~gv~~~~~~l~~  173 (184)
                      +|.|+++++++|.+
T Consensus       160 ~g~gi~e~~~~l~~  173 (174)
T cd04153         160 TGEGLPEGLDWIAS  173 (174)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=2.2e-28  Score=171.57  Aligned_cols=157  Identities=22%  Similarity=0.379  Sum_probs=129.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-----CeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-----DVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +||+++|.+|+|||||++++....+...+.++.+.++..+.+.++     +..+.+.+||++|+++|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877777666653     467889999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccC------------CCCCCCCCeEEEEEeCCCCCCCccccHH----HHHHHH
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNS------------NQNASPDVVKVLAGNKSDVKTQRAVQTK----DAQMLA  146 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~  146 (184)
                      +++|||++++.+++.+..|+..+.......            +.....++|++||+||+|+.+.+.....    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999997642110            0112357999999999999765554443    345678


Q ss_pred             HhcCCCEEEeecCCCCCH
Q psy12922        147 DNYSLPFYEVSCKQNINI  164 (184)
Q Consensus       147 ~~~~~~~~~~Sa~~~~gv  164 (184)
                      ++.+++.++.+|.++..+
T Consensus       161 ~~~~~~~i~~~c~~~~~~  178 (202)
T cd04102         161 EQGNAEEINLNCTNGRLL  178 (202)
T ss_pred             HhcCCceEEEecCCcccc
Confidence            899999999998866543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.8e-28  Score=167.10  Aligned_cols=159  Identities=23%  Similarity=0.342  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||+++|..+.+...+.. +...+ .....+.+..+.+.+|||||...+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999999887655332 22222 233345667788999999999888777777789999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHHhc-C-CCEEEeecCCCC
Q psy12922         88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLADNY-S-LPFYEVSCKQNI  162 (184)
Q Consensus        88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~  162 (184)
                      |++++.+++.+. .|+..+...        ..+.|+++|+||+|+.+.....  ......++... + .+++++||++|.
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~--------~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  150 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRL--------GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI  150 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence            999999999975 577777652        3489999999999997644321  22233333333 2 379999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIR  176 (184)
Q Consensus       163 gv~~~~~~l~~~~~  176 (184)
                      |++++|+.+.+.+.
T Consensus       151 ~v~~lf~~~~~~~~  164 (166)
T cd01893         151 NVSEVFYYAQKAVL  164 (166)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.9e-29  Score=170.49  Aligned_cols=155  Identities=20%  Similarity=0.298  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +|+++|.+|||||||+++|....+ ...+.|+.+.....  +.  ...+.+.+||+||..++...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44556666543322  22  23566999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH---H--HhcCCCEEEeecCCCC
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML---A--DNYSLPFYEVSCKQNI  162 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~--~~~~~~~~~~Sa~~~~  162 (184)
                      |++++.++.....|+..+....    .....++|+++|+||+|+.....  .......   .  ....++++++||++|.
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~  150 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHP----DIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGE  150 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCc----ccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence            9999998888888777765421    01235799999999999865321  1111111   1  1123458999999999


Q ss_pred             CHHHHHHHHHH
Q psy12922        163 NIDEAFLTLAR  173 (184)
Q Consensus       163 gv~~~~~~l~~  173 (184)
                      |++++|+||.+
T Consensus       151 gv~~~~~~l~~  161 (162)
T cd04157         151 GLDEGVQWLQA  161 (162)
T ss_pred             chHHHHHHHhc
Confidence            99999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=3.7e-29  Score=171.60  Aligned_cols=154  Identities=21%  Similarity=0.274  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      +|+++|.+|||||||++++.+. +...+.|+.+..  ...+...  .+.+.+||+||+..+...+..+++++|++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999876 555666766644  3334343  4669999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH----HHHHHHHhc--CCCEEEeecCCC-
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK----DAQMLADNY--SLPFYEVSCKQN-  161 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~--~~~~~~~Sa~~~-  161 (184)
                      ++++.+++....|+..+...      ....++|+++|+||.|+.+.+.....    ....++...  .+++++|||++| 
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~------~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQH------PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcC------ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            99999999999998888753      22357999999999999764422111    122333222  356788999998 


Q ss_pred             -----CCHHHHHHHHHH
Q psy12922        162 -----INIDEAFLTLAR  173 (184)
Q Consensus       162 -----~gv~~~~~~l~~  173 (184)
                           .|+++.|+||..
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.1e-28  Score=168.05  Aligned_cols=153  Identities=23%  Similarity=0.368  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      +|+++|++|||||||++++..+.+.. ..++.+..+.  .+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999987753 3455554432  33232 34679999999999988888889999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH------HHHHhcCCCEEEeecCCCC
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ------MLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~  162 (184)
                      .+++.++.....++..+...      ....+.|+++|+||+|+....  ...+..      .++...+++++++||++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~  148 (160)
T cd04156          77 SSDEARLDESQKELKHILKN------EHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGE  148 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhc------hhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence            99998888888877777652      223589999999999986421  112221      1122234568999999999


Q ss_pred             CHHHHHHHHHH
Q psy12922        163 NIDEAFLTLAR  173 (184)
Q Consensus       163 gv~~~~~~l~~  173 (184)
                      |++++|++|.+
T Consensus       149 gv~~~~~~i~~  159 (160)
T cd04156         149 GLAEAFRKLAS  159 (160)
T ss_pred             ChHHHHHHHhc
Confidence            99999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=2e-28  Score=167.85  Aligned_cols=153  Identities=23%  Similarity=0.369  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +|+++|++|||||||++++.....      ...+.++.+..+  ..+.++  ...+.+||+||++.+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      223344444343  334444  3569999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-------cCCCEEE
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-------YSLPFYE  155 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~  155 (184)
                      +++|+|+++++++.....++..+...      ....+.|+++++||+|+...  ........+...       .++++++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRN------EALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLP  148 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEE
Confidence            99999999998888888888777653      33468999999999998653  222333333221       2457999


Q ss_pred             eecCCCCCHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~  173 (184)
                      +||++|.|++++++||.+
T Consensus       149 ~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         149 VSALEGTGVREGIEWLVE  166 (167)
T ss_pred             eeCCCCcCHHHHHHHHhc
Confidence            999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=3e-28  Score=170.44  Aligned_cols=159  Identities=25%  Similarity=0.342  Sum_probs=123.1

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      -..+..+|+++|++|||||||++++.+..+. .+.++.+..  ...+.+++  ..+.+||+||+..+...+..+++.+|+
T Consensus        15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~   89 (190)
T cd00879          15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDG   89 (190)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            3456799999999999999999999987663 344554432  33444554  458999999999888888899999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh--------------
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN--------------  148 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--------------  148 (184)
                      +++|+|.+++.++.....++..+...      ....+.|+++|+||+|+..  .............              
T Consensus        90 iilV~D~~~~~s~~~~~~~~~~i~~~------~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (190)
T cd00879          90 IVFLVDAADPERFQESKEELDSLLSD------EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVS  161 (190)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHcC------ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCccccccccccccccc
Confidence            99999999998888887777777652      2335799999999999864  3444444444432              


Q ss_pred             --cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        149 --YSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       149 --~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                        ..+.+++|||++|.|++++|+||.+.
T Consensus       162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         162 GIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             CceeEEEEEeEecCCCChHHHHHHHHhh
Confidence              22468999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=3.9e-28  Score=165.05  Aligned_cols=152  Identities=22%  Similarity=0.322  Sum_probs=118.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|.+|||||||++++.+... ....++.+...  ..+.+.  ...+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 34444444333  333333  3569999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecCCCCC
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  163 (184)
                      +++++++.....++..+...      ....+.|+++|+||+|+....  ...+.....     ....++++++||++|.|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~------~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  147 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNE------EELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDG  147 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhC------cccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence            99999999988888777663      235689999999999987633  222222222     22346799999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        164 IDEAFLTLAR  173 (184)
Q Consensus       164 v~~~~~~l~~  173 (184)
                      ++++|++|.+
T Consensus       148 v~~~~~~l~~  157 (158)
T cd00878         148 LDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=1.9e-28  Score=166.65  Aligned_cols=152  Identities=25%  Similarity=0.361  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|.+|+|||||++++..+.+. ...++.+.+..  .+..  ....+++||+||+..+...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999887664 33455544433  2323  34569999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-HH----HhcCCCEEEeecCCCCC
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-LA----DNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~g  163 (184)
                      ++++.++.....++..+...      ....+.|+++|+||+|+.+...  ...... +.    ...+.+++++||++|.|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~------~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g  147 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEE------EELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEG  147 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhc------hhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence            99988877666555544331      2235799999999999875321  112211 11    11234699999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        164 IDEAFLTLAR  173 (184)
Q Consensus       164 v~~~~~~l~~  173 (184)
                      +++++++|.+
T Consensus       148 i~~l~~~l~~  157 (158)
T cd04151         148 LDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=2.3e-27  Score=165.09  Aligned_cols=158  Identities=22%  Similarity=0.295  Sum_probs=119.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++.++|+++|.+|||||||++++.+..+. .+.++.+..  ...+...+  +.+.+||+||+..+...+..++..+|++
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~i   88 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGI   88 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            366799999999999999999999987653 233443322  23333343  5689999999999888999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh------------cCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN------------YSL  151 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~  151 (184)
                      ++|+|+++++++.....++..+...      ....+.|+++|+||+|+..  ..+..++.+....            ...
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~------~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~  160 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSD------EELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPL  160 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcC------hhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCcee
Confidence            9999999999988888777776542      2235789999999999864  3333333332211            123


Q ss_pred             CEEEeecCCCCCHHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      .+++|||++|.|++++++||.+.
T Consensus       161 ~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      161 EVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEEEeecccCCChHHHHHHHHhh
Confidence            58999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073|consensus

Probab=99.96  E-value=5.1e-27  Score=153.29  Aligned_cols=165  Identities=23%  Similarity=0.325  Sum_probs=130.6

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      .++.+++|+++|..||||||++++|.+.+. ....|+.+  +...++.+++  +++.+||.+|+..++..|..|+.++|+
T Consensus        12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   12 LKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             hhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            456789999999999999999999998773 33344444  4444444444  569999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc---ccc-HHHHHHHHHhcCCCEEEeec
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR---AVQ-TKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      +|+|+|.+++..+++....+..+..-      ..-...|++|++||.|+...-   ++. ...+..+++...++++.|||
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~e------erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~  160 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVE------ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSA  160 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhh------hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEec
Confidence            99999999998888877666665542      345569999999999997421   111 12245556777899999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~~  178 (184)
                      .+|+++.+.++|+...+.++
T Consensus       161 ~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  161 VTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cccccHHHHHHHHHHHHHHH
Confidence            99999999999999998874

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.95  E-value=5.7e-27  Score=175.60  Aligned_cols=167  Identities=17%  Similarity=0.184  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccchHh---hhcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLTTA---YYRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~---~~~~~   80 (184)
                      ..|+++|.||||||||+++|+.........++++.......+.+.+ ...+.+||+||..+.    ..+...   .++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            5689999999999999999998765555556667677666665532 224899999996421    122223   44578


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      +++++|+|++++++++....|..++..+.     ....++|+++|+||+|+.............+....+.+++++||++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~-----~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAkt  312 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYS-----PELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVT  312 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhh-----hhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            99999999998878888889988887642     1124789999999999976444333334444555678999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy12922        161 NINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~~  180 (184)
                      ++|+++++++|.+.+.+.+.
T Consensus       313 g~GI~eL~~~L~~~l~~~~~  332 (335)
T PRK12299        313 GEGLDELLRALWELLEEARR  332 (335)
T ss_pred             CCCHHHHHHHHHHHHHhhhc
Confidence            99999999999998876544

>KOG0393|consensus

Probab=99.95  E-value=5e-28  Score=165.55  Aligned_cols=166  Identities=28%  Similarity=0.503  Sum_probs=146.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ...+|+.++|..++|||+|+-.+....|+.++.|+.. +.+...+..+ +..+++.+|||+|++.|..++...++++|.+
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999998 6666667785 9999999999999999999887888999999


Q ss_pred             EEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcC
Q psy12922         84 LLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYS  150 (184)
Q Consensus        84 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~  150 (184)
                      +++|++.++.+++++ .+|+.++..+        .++.|+++|++|.|+.+.            ..+...+..++++..|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~--------cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig  152 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHH--------CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG  152 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhh--------CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC
Confidence            999999999999996 5799999874        699999999999999642            3456677899999999


Q ss_pred             C-CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        151 L-PFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       151 ~-~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      + .|++|||++..|++++|+.....+....
T Consensus       153 a~~y~EcSa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  153 AVKYLECSALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             cceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence            5 7999999999999999999888776543

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.3e-26  Score=159.78  Aligned_cols=144  Identities=38%  Similarity=0.643  Sum_probs=127.5

Q ss_pred             CcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhc
Q psy12922         30 ETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVG  109 (184)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  109 (184)
                      +.|...+.++.+.++....+.+++..+.+.+|||||++++..++..+++.+|++++|||++++.+++.+..|+..+... 
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~-   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence            3466778899998998888888999999999999999999999999999999999999999999999999999988763 


Q ss_pred             ccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        110 CNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       110 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                            .....|+++|+||+|+...+.+...+...++...++.++++||++|.|++++|++|.+.+.+...
T Consensus        82 ------~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         82 ------RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             ------cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence                  34679999999999998766677777888888889999999999999999999999999876443

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=6.1e-27  Score=158.72  Aligned_cols=154  Identities=25%  Similarity=0.466  Sum_probs=120.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      .|+++|++|||||||++++.+..+...+.++.+..+..  +...+  ..+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999998888888877766543  32333  569999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH----HHhcCCCEEEeecCCCCCH
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML----ADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +++++++.....++..+...      ....+.|+++|+||+|+......... ...+    .....++++++|+++|.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  149 (159)
T cd04159          77 AADRTALEAAKNELHDLLEK------PSLEGIPLLVLGNKNDLPGALSVDEL-IEQMNLKSITDREVSCYSISCKEKTNI  149 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcC------hhhcCCCEEEEEeCccccCCcCHHHH-HHHhCcccccCCceEEEEEEeccCCCh
Confidence            99998888887777776542      33467899999999998753322111 1111    1122467899999999999


Q ss_pred             HHHHHHHHH
Q psy12922        165 DEAFLTLAR  173 (184)
Q Consensus       165 ~~~~~~l~~  173 (184)
                      ++++++|.+
T Consensus       150 ~~l~~~l~~  158 (159)
T cd04159         150 DIVLDWLIK  158 (159)
T ss_pred             HHHHHHHhh
Confidence            999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.95  E-value=6.4e-27  Score=160.80  Aligned_cols=159  Identities=14%  Similarity=0.178  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----ccccchHhh---hcCCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----RFRTLTTAY---YRGAM   81 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~---~~~~d   81 (184)
                      +|+++|.+|||||||+++|.+........+.++.+.....+.+.+. ..+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999986543233333333333333434443 359999999963    222333333   34699


Q ss_pred             EEEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-cCCCEEEeecC
Q psy12922         82 GILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-YSLPFYEVSCK  159 (184)
Q Consensus        82 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~  159 (184)
                      ++++|+|++++ ++++....|.+.+....     .....+|+++|+||+|+....... .....+... .+++++++||+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~  154 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYN-----PELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISAL  154 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhC-----ccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecC
Confidence            99999999998 78888888888887631     112478999999999986644432 233444444 37889999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARL  174 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~  174 (184)
                      ++.|+++++++|.+.
T Consensus       155 ~~~gi~~l~~~i~~~  169 (170)
T cd01898         155 TGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=1.5e-26  Score=158.69  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHhhhcC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTAYYRG   79 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~~   79 (184)
                      +|+++|.+|||||||+++|++..+.....+..+.+.........  ...+.+|||||.....         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999987644333444444444343333  3569999999973211         001111223


Q ss_pred             CcEEEEEEeCCChhH--HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         80 AMGILLMYDVTNLES--FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      +|++++|+|++++.+  .+....|+..+...        ..+.|+++|+||+|+.+......  ...+....+.+++++|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--------~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~S  149 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--------FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKIS  149 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhh--------cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEE
Confidence            689999999998654  35556677777541        24799999999999975433332  3445555567899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLI  175 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~  175 (184)
                      |++|.|++++++++.+.+
T Consensus       150 a~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         150 TLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ecccCCHHHHHHHHHHHh
Confidence            999999999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.95  E-value=3.2e-27  Score=157.74  Aligned_cols=148  Identities=23%  Similarity=0.323  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhh--cC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYY--RG   79 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~--~~   79 (184)
                      ++|+++|.||||||||+|+|++........|.++.+.....+.+.+..  +.++|+||.-...      .+...++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            589999999999999999999988877788899989888888887755  9999999943222      2233443  58


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK  159 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
                      .|++++|+|+++.+   .-.....++..          .++|+++++||+|......... +...+.+.+++|++++||+
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e----------~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~  144 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE----------LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSAR  144 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH----------TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTT
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH----------cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeC
Confidence            99999999998643   33334455554          4799999999999876444333 3677788889999999999


Q ss_pred             CCCCHHHHHHHH
Q psy12922        160 QNINIDEAFLTL  171 (184)
Q Consensus       160 ~~~gv~~~~~~l  171 (184)
                      +++|++++++.|
T Consensus       145 ~~~g~~~L~~~I  156 (156)
T PF02421_consen  145 TGEGIDELKDAI  156 (156)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHhhC
Confidence            999999998765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04155 Arl3 Arl3 subfamily

Probab=99.95  E-value=4.4e-26  Score=157.14  Aligned_cols=155  Identities=22%  Similarity=0.351  Sum_probs=116.6

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +....++|+++|++|||||||++++.+..+. ...++.+...  ..+...+  ..+.+||+||+..+...+..+++.+|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            3456799999999999999999999987653 2344444333  3333444  458999999998888888888999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--------CCEE
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--------LPFY  154 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~  154 (184)
                      +++|+|+++..++.....++..+...      ....++|+++++||+|+......  .   .+....+        .+++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ivv~nK~D~~~~~~~--~---~i~~~l~~~~~~~~~~~~~  153 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEE------EKLAGVPVLVFANKQDLATAAPA--E---EIAEALNLHDLRDRTWHIQ  153 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEECCCCccCCCH--H---HHHHHcCCcccCCCeEEEE
Confidence            99999999988888777777666542      23457999999999998653221  1   1222222        2368


Q ss_pred             EeecCCCCCHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~  173 (184)
                      ++||++|+|++++++||.+
T Consensus       154 ~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         154 ACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EeECCCCCCHHHHHHHHhc
Confidence            9999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=2.3e-26  Score=159.36  Aligned_cols=154  Identities=20%  Similarity=0.280  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc-------CCCcccc------ccceeEEEEE--EEe---CCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET-------YYDTYIS------TIGIDFKQKI--IDL---DDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~l~D~~G~~~~~   70 (184)
                      +|+++|++++|||||+++|.+..       +...+.+      ..+..+....  +.+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998732       1111111      1122332222  222   5567789999999999998


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS  150 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (184)
                      ..+..+++.+|++++|+|++++.+......|.... .          .++|+++|+||+|+.+..  ......+++...+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~  148 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----------NNLEIIPVINKIDLPSAD--PERVKQQIEDVLG  148 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----------cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhC
Confidence            88888999999999999999876665555554322 1          368999999999986422  1222345555556


Q ss_pred             C---CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        151 L---PFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       151 ~---~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +   .++++||++|.|+++++++|.+.+
T Consensus       149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         149 LDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            5   389999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01878 HflX HflX subfamily

Probab=99.95  E-value=2.1e-26  Score=162.81  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=113.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------cccchHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------FRTLTTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~   75 (184)
                      +..++|+++|++|||||||++++++..+.....+..+.+.....+..++. ..+.+|||||...         +...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            44589999999999999999999997654333334444444444544443 2589999999632         11111 2


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      .+..+|++++|+|++++.+......|...+..       ....++|+++|+||+|+.......     ........++++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-------~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~  184 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKE-------LGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVF  184 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHH-------cCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEE
Confidence            35689999999999998887777776666655       234579999999999987543222     334455678999


Q ss_pred             eecCCCCCHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~  174 (184)
                      +||++|.|+++++++|.+.
T Consensus       185 ~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         185 ISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EEcCCCCCHHHHHHHHHhh
Confidence            9999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.2e-25  Score=165.23  Aligned_cols=147  Identities=23%  Similarity=0.410  Sum_probs=120.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-------------eeEEEEEEeCCCcccccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------------VPTKLQIWDTAGQERFRT   71 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~D~~G~~~~~~   71 (184)
                      ...+||+++|..|||||||+++|..+.+...+.++.+.++..+.+.+++             ..+.+.|||++|++.|..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            4569999999999999999999999988888888988887777666542             457899999999999999


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCC-----CCCCCCCeEEEEEeCCCCCCCc---c---ccHH
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN-----QNASPDVVKVLAGNKSDVKTQR---A---VQTK  140 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~D~~~~~---~---~~~~  140 (184)
                      ++..+++++|++|+|||++++.+++.+..|+..+........     .....++|++||+||+|+...+   .   +...
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            999999999999999999999999999999999987421000     0012368999999999996542   2   3567


Q ss_pred             HHHHHHHhcCC
Q psy12922        141 DAQMLADNYSL  151 (184)
Q Consensus       141 ~~~~~~~~~~~  151 (184)
                      .+..++.+.++
T Consensus       179 ~a~~~A~~~g~  189 (334)
T PLN00023        179 AARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHcCC
Confidence            88999998874

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.95  E-value=1.5e-25  Score=151.59  Aligned_cols=158  Identities=28%  Similarity=0.466  Sum_probs=126.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+...+..+..+++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999888778888888888877777777668899999999999988888888999999999


Q ss_pred             EeCCCh-hHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         87 YDVTNL-ESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        87 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|.... .++.... .+...+...       ...+.|+++++||+|+.... ........+......+++++||++|.|+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~-------~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv  152 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHH-------AESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNI  152 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHh-------cccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence            999876 5565554 666666653       22288999999999997633 2333333344444668999999999999


Q ss_pred             HHHHHHHH
Q psy12922        165 DEAFLTLA  172 (184)
Q Consensus       165 ~~~~~~l~  172 (184)
                      .+++.+|.
T Consensus       153 ~~~~~~l~  160 (161)
T TIGR00231       153 DSAFKIVE  160 (161)
T ss_pred             HHHHHHhh
Confidence            99998874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0070|consensus

Probab=99.94  E-value=6.7e-26  Score=151.55  Aligned_cols=161  Identities=18%  Similarity=0.313  Sum_probs=129.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ..++++|+++|..+|||||++.+|..++.... .|+.+..+..  +.+.  .+++++||.+|+..++.+|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            46789999999999999999999999887555 6666655544  4445  45599999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeec
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSC  158 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  158 (184)
                      |||+|.++.+.+.+.+..+..+...      ......|+++++||.|++.  ..+..++.....     .....+..|+|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~------~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a  160 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAE------PELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCA  160 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcC------cccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence            9999999999999998888888764      4467999999999999986  333333222221     12234667899


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      .+|+|+.+.++|+.+.+..
T Consensus       161 ~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cccccHHHHHHHHHHHHhc
Confidence            9999999999999998764

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=1.5e-25  Score=152.93  Aligned_cols=155  Identities=19%  Similarity=0.158  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc---CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET---YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.|+++|.+|||||||+++|.+..   +..+..++++.+.....+...+ ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   3333344555555544554442 346999999999888766667788999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHh---cCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADN---YSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~  159 (184)
                      +|+|++++.. ......+..+..         ....|+++|+||+|+.....  ....+..+....   .+.+++++||+
T Consensus        80 ~V~d~~~~~~-~~~~~~~~~~~~---------~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (164)
T cd04171          80 LVVAADEGIM-PQTREHLEILEL---------LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV  149 (164)
T ss_pred             EEEECCCCcc-HhHHHHHHHHHH---------hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence            9999986211 111122222222         12349999999999975321  112233333333   46789999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLAR  173 (184)
Q Consensus       160 ~~~gv~~~~~~l~~  173 (184)
                      +|.|++++++.+.+
T Consensus       150 ~~~~v~~l~~~l~~  163 (164)
T cd04171         150 TGEGIEELKEYLDE  163 (164)
T ss_pred             CCcCHHHHHHHHhh
Confidence            99999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG4252|consensus

Probab=99.94  E-value=3.3e-27  Score=156.51  Aligned_cols=169  Identities=28%  Similarity=0.561  Sum_probs=157.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.-+|++|+|..++||||++++++.+-|..++..+++.++....+.+.+...+..+||++|+++|......|++.+.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            34589999999999999999999999999999999999999988888888888899999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +||+.++..+|+....|++.+..        ....+|.++|-||+|+.++..+...+...+++.+++.++.+|++...|+
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~--------e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV  169 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQK--------ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV  169 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHH--------HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            99999999999999999999986        4678999999999999998889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy12922        165 DEAFLTLARLIREQTRL  181 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~~  181 (184)
                      ..+|..|.+.+.+...+
T Consensus       170 ~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988765544

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=5.7e-25  Score=150.75  Aligned_cols=157  Identities=16%  Similarity=0.113  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      .|+++|.+|||||||+++|....+.....++.+.......+... +....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988766555555545444444443 23456999999999988888888889999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHHHHH------hcCCCEEEeecCC
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQMLAD------NYSLPFYEVSCKQ  160 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~  160 (184)
                      |++++...+.. ..+..+..          .++|+++|+||+|+........ .....+..      ...++++++||++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~----------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA----------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT  150 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH----------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence            99875322211 12222322          4689999999999864321111 11111111      1236899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIR  176 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~  176 (184)
                      |.|+++++++|.+...
T Consensus       151 ~~gi~~l~~~l~~~~~  166 (168)
T cd01887         151 GEGIDDLLEAILLLAE  166 (168)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999987643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.94  E-value=5.3e-25  Score=164.89  Aligned_cols=161  Identities=15%  Similarity=0.201  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccchHhh---hcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLTTAY---YRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~~---~~~~   80 (184)
                      ..|+++|.||||||||+++|+.........++++.......+.+.+ ...+.+||+||....    ..+...+   +..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5789999999999999999998765444455556666666665554 245899999996432    2233333   4569


Q ss_pred             cEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         81 MGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        81 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      +++++|+|+++.   ++++....|.+++..+.     ....+.|+++|+||+|+..... .......+....+.+++++|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~-----~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iS  310 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYS-----PELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPIS  310 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhh-----hhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEE
Confidence            999999999976   67788888888776631     1124789999999999976432 23334556666678899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLI  175 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~  175 (184)
                      |++++|+++++++|.+.+
T Consensus       311 Aktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       311 ALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.94  E-value=6.7e-25  Score=148.90  Aligned_cols=148  Identities=22%  Similarity=0.256  Sum_probs=112.2

Q ss_pred             EEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc------hHhhhc--CCcEE
Q psy12922         12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL------TTAYYR--GAMGI   83 (184)
Q Consensus        12 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~~--~~d~~   83 (184)
                      ++|.+|+|||||++++.+........++++.+.....+.+++.  .+.+|||||...+...      +..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999987655555666676776666767664  5899999998766542      455554  89999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|+++++..   ..+...+..          .++|+++|+||+|+.+....... ...+...++++++++||++|.|
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~----------~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~  144 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE----------LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEG  144 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH----------cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCC
Confidence            999999876442   233444433          36899999999999764433332 3466677789999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLI  175 (184)
Q Consensus       164 v~~~~~~l~~~~  175 (184)
                      ++++++++.+.+
T Consensus       145 ~~~l~~~l~~~~  156 (158)
T cd01879         145 IDELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=3.7e-25  Score=167.07  Aligned_cols=155  Identities=21%  Similarity=0.216  Sum_probs=114.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc-c--------ccccchHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ-E--------RFRTLTTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-~--------~~~~~~~~   75 (184)
                      +..++|+++|.+|||||||+|+|++........++++.+.....+.+++. ..+.+|||+|. +        .|...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            34489999999999999999999998765555566667777777777432 35899999996 2        222222 2


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      .+.++|++++|+|++++.+.+....|...+..       ....+.|+++|+||+|+......     .... ....++++
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~-------l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~  331 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEE-------LGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVF  331 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHH-------hccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEE
Confidence            46789999999999999887777666655554       22357899999999998653221     1111 12346899


Q ss_pred             eecCCCCCHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~  174 (184)
                      +||++|.|+++++++|.+.
T Consensus       332 iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       332 VSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EEccCCCCHHHHHHHHHhh
Confidence            9999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=1.7e-24  Score=145.16  Aligned_cols=154  Identities=45%  Similarity=0.760  Sum_probs=121.7

Q ss_pred             EEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC
Q psy12922         12 VLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT   90 (184)
Q Consensus        12 i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   90 (184)
                      ++|++|||||||++++.+... .....++. .++.............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999776 44444444 6666666666677788999999999888887788889999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHHhcCCCEEEeecCCCCCHHHHHH
Q psy12922         91 NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYSLPFYEVSCKQNINIDEAFL  169 (184)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  169 (184)
                      ++.+......|+......      ....+.|+++|+||+|+.......... .........++++++|++++.|++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  153 (157)
T cd00882          80 DRESFENVKEWLLLILIN------KEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFE  153 (157)
T ss_pred             CHHHHHHHHHHHHHHHHh------hccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence            999888888763332222      456789999999999987643333322 3445556678999999999999999999


Q ss_pred             HHH
Q psy12922        170 TLA  172 (184)
Q Consensus       170 ~l~  172 (184)
                      +|.
T Consensus       154 ~l~  156 (157)
T cd00882         154 ELA  156 (157)
T ss_pred             HHh
Confidence            875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=4.3e-25  Score=147.52  Aligned_cols=134  Identities=20%  Similarity=0.214  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-----ccccchHhhhcCCcEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-----RFRTLTTAYYRGAMGI   83 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~   83 (184)
                      ||+++|.+|+|||||+++|.+..+.  +.++.+.++       .     ..+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987642  222222111       1     2689999972     2333333 47899999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNI  162 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (184)
                      ++|+|++++.++... .|...          .   ..|+++|+||+|+.+ +........+++...+. +++++||++|.
T Consensus        67 ilv~d~~~~~s~~~~-~~~~~----------~---~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  131 (142)
T TIGR02528        67 ALVQSATDPESRFPP-GFASI----------F---VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQ  131 (142)
T ss_pred             EEEecCCCCCcCCCh-hHHHh----------c---cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence            999999998876442 22211          1   239999999999864 23344555666767776 89999999999


Q ss_pred             CHHHHHHHHH
Q psy12922        163 NIDEAFLTLA  172 (184)
Q Consensus       163 gv~~~~~~l~  172 (184)
                      |++++|+++.
T Consensus       132 gi~~l~~~l~  141 (142)
T TIGR02528       132 GLEALVDYLN  141 (142)
T ss_pred             CHHHHHHHHh
Confidence            9999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=5.6e-25  Score=155.20  Aligned_cols=157  Identities=18%  Similarity=0.227  Sum_probs=105.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC-----------ccccccc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG-----------QERFRTL   72 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~   72 (184)
                      ....++|+++|.+|||||||+++|.+..+.....++.+...  ..+...    .+.+|||||           .+.+...
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence            44578999999999999999999998776555555544332  223222    489999999           3455555


Q ss_pred             hHhhhc----CCcEEEEEEeCCChhHH-H---------HHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc
Q psy12922         73 TTAYYR----GAMGILLMYDVTNLESF-Q---------HLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ  138 (184)
Q Consensus        73 ~~~~~~----~~d~~i~v~d~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (184)
                      +..++.    .++++++|+|.++.... +         ........+.          ..++|+++|+||+|+.+..   
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~p~iiv~NK~Dl~~~~---  146 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----------ELGIPPIVAVNKMDKIKNR---  146 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----------HcCCCeEEEEECccccCcH---
Confidence            545543    45788889988643211 0         0011122222          2479999999999986533   


Q ss_pred             HHHHHHHHHhcCC---------CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        139 TKDAQMLADNYSL---------PFYEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       139 ~~~~~~~~~~~~~---------~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      .....+++..+++         +++++||++| |+++++++|.+.+.+.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            2234445555554         5899999999 999999999998765443

>KOG3883|consensus

Probab=99.93  E-value=3.7e-24  Score=138.49  Aligned_cols=170  Identities=25%  Similarity=0.342  Sum_probs=142.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC--CCccccccceeEEEEEEEe-CCeeEEEEEEeCCCcccc-ccchHhhhcCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERF-RTLTTAYYRGA   80 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~   80 (184)
                      .+..||++||..++|||++++.|..++.  ..++.|+.. +.+...+.. .+..-.++++||.|.+.+ ..+..+|++-+
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            4568999999999999999999998665  456677777 444444433 454456899999998887 66778999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |++++||+..++++|+.+...-..+..+      ...+.+|+++++||+|..+++++..+.+..|++...+..+++++.+
T Consensus        86 DafVLVYs~~d~eSf~rv~llKk~Idk~------KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d  159 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVELLKKEIDKH------KDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD  159 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhhc------cccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence            9999999999999988776655556554      5678999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhh
Q psy12922        161 NINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      ...+-+.|..+...+...+.+
T Consensus       160 R~sL~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  160 RPSLYEPFTYLASRLHQPQSK  180 (198)
T ss_pred             chhhhhHHHHHHHhccCCccc
Confidence            999999999998888765544

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.93  E-value=1.7e-24  Score=151.92  Aligned_cols=149  Identities=21%  Similarity=0.213  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh--CcCCCcc------------ccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD--ETYYDTY------------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT   73 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   73 (184)
                      -+|+++|.+++|||||+++|..  +.+....            .++.+.........+......+.+|||||+..|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  4433221            1223333333333444455679999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHHHHHH-----
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQMLAD-----  147 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-----  147 (184)
                      ..+++.+|++++|+|+++.. ......++..+..          .++|+++|+||+|+...+.. ...+...+..     
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGAT  151 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence            99999999999999998742 2222333333332          46899999999999653322 1223333332     


Q ss_pred             --hcCCCEEEeecCCCCCHHHH
Q psy12922        148 --NYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus       148 --~~~~~~~~~Sa~~~~gv~~~  167 (184)
                        ..+++++++||++|.|+.++
T Consensus       152 ~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         152 EEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             cccCccCEEEeehhcccccccc
Confidence              33678999999999887543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.93  E-value=4.9e-24  Score=165.21  Aligned_cols=153  Identities=18%  Similarity=0.261  Sum_probs=117.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~   75 (184)
                      ...++|+++|.+|+|||||+|+|++... .....++++.++....+.+++..  +.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHH
Confidence            3568999999999999999999998653 33445666777777777777765  799999998654432        235


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      +++++|++++|+|++++.+.+..  |+..+..          .++|+++|+||+|+...      ....++...+++++.
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----------~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~  340 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK----------SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSN  340 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh----------CCCCEEEEEECccCCCc------chhhhhhhcCCceEE
Confidence            67899999999999988776654  5554432          46899999999998643      123445667788999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +||++ .|++++++.+.+.+.+.
T Consensus       341 vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHHHH
Confidence            99998 69999999998887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=7.7e-24  Score=162.52  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccchHhh---hcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLTTAY---YRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~   80 (184)
                      ..|+++|.||||||||+++|++........|.++.......+.+++ ...+.+||+||...    ...+...|   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            3799999999999999999998765444456666666555555542 23599999999642    22233334   4568


Q ss_pred             cEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         81 MGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        81 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      +++++|+|+++.   +.+++...|.+++..+.     ....++|++||+||+|+...    ......+....+.+++++|
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~-----~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iS  308 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYN-----PRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPIS  308 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhc-----hhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEe
Confidence            999999999864   56777778888877642     11247899999999998532    2334455556667899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      |+++.|+++++++|.+.+.+.+
T Consensus       309 A~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        309 ALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999998886643

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=148.76  Aligned_cols=165  Identities=38%  Similarity=0.533  Sum_probs=133.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|+.|||||||+++|....+...+.++.+..+........+..+.+.+|||+|++++..++..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999988888888788777776666577899999999999999999999999999999


Q ss_pred             EeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------ccHHHHHHHHHhc---C
Q psy12922         87 YDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNY---S  150 (184)
Q Consensus        87 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~  150 (184)
                      +|.++. .+.+....|...+..       ......|+++|+||+|+.....            .............   .
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~-------~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRE-------LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVAN  157 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHH-------hCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcc
Confidence            999994 445566788888877       3346899999999999976432            2222222222211   2


Q ss_pred             CCEEEeecC--CCCCHHHHHHHHHHHHHHH
Q psy12922        151 LPFYEVSCK--QNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       151 ~~~~~~Sa~--~~~gv~~~~~~l~~~~~~~  178 (184)
                      ..++++|++  .+.++.+++.++...+...
T Consensus       158 ~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         158 PALLETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             cceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence            238999999  9999999999999888653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=2.1e-24  Score=148.99  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=109.6

Q ss_pred             EEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccch---HhhhcCCcEEE
Q psy12922         12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLT---TAYYRGAMGIL   84 (184)
Q Consensus        12 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~---~~~~~~~d~~i   84 (184)
                      ++|++|||||||+++|.+........+.++.+.....+..++ ...+.+|||||...    ...+.   ...++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999765223333344444444444441 33489999999632    22222   23467899999


Q ss_pred             EEEeCCCh------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922         85 LMYDVTNL------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        85 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      +|+|++++      .++.....|...+.............+.|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      567777777777765310000000247999999999999764443333223444455678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARL  174 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~  174 (184)
                      +++.|++++++++...
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=7.6e-24  Score=166.34  Aligned_cols=160  Identities=22%  Similarity=0.249  Sum_probs=115.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccch-
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTLT-   73 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~-   73 (184)
                      ..++|+++|.+|+|||||+++|++..+ .....++++.+.....+..++..  +.+|||||...          +..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            458999999999999999999998765 34556667777766677677765  68999999532          22222 


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHH-HHHHhcC
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQ-MLADNYS  150 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~~~~  150 (184)
                      ..+++.+|++++|+|++++.+..+.. ++..+..          .++|+++|+||+|+.......  ..... .+.....
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~  356 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPW  356 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCC
Confidence            23568999999999999887776654 3344432          478999999999996422111  11111 1222234


Q ss_pred             CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        151 LPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++++++||++|.|++++|+.+.+.+...
T Consensus       357 ~~~~~~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        357 APRVNISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            7899999999999999999998877653

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=8.2e-24  Score=155.38  Aligned_cols=154  Identities=16%  Similarity=0.113  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhhcC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYYRG   79 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~   79 (184)
                      +|+++|.||||||||+|+|.+..+. ....+.++...........+  ..+.+|||||......        ....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999997753 23333344333322222233  3589999999643211        12345789


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeec
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSC  158 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  158 (184)
                      +|++++|+|++++.+..  ..++..+..          .+.|+++|+||+|+..... .......+....+. +++++||
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----------~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA  146 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN----------LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISA  146 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh----------cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEec
Confidence            99999999999865543  333444432          4789999999999864222 12233344444443 7899999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++|.|+++++++|.+.+.+
T Consensus       147 ~~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       147 LTGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCCCCHHHHHHHHHHhCCC
Confidence            9999999999999887654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=2e-23  Score=141.28  Aligned_cols=146  Identities=21%  Similarity=0.240  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhhhc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAYYR   78 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~   78 (184)
                      ++|+++|++|+|||||++++++... .....+.++.++....+...+  ..+.+|||||...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            6899999999999999999998764 223344555555555555554  35899999997654322        224567


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      .+|++++|+|++++.+......+..             ....|+++|+||+|+......       .......+++++||
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa  139 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-------------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISA  139 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-------------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEEC
Confidence            8999999999998776655443322             257999999999998764333       33445678999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLI  175 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~  175 (184)
                      +++.|+++++++|.+.+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.92  E-value=7.5e-24  Score=164.96  Aligned_cols=149  Identities=23%  Similarity=0.275  Sum_probs=114.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~   76 (184)
                      ..++|+++|.+|+|||||+|+|++... .....++++.++....+.+++..  +.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            458999999999999999999998764 34456666777777777777654  899999998654432        2235


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      +..+|++++|+|++++.+.+....|..             ..+.|+++|+||+|+.......        ...+.+++++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~i  350 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE-------------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRI  350 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh-------------cCCCCcEEEEEhhhccccchhh--------hccCCceEEE
Confidence            788999999999998877665433322             2468999999999996532221        3445789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||++|.|+++++++|.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988754

>PRK11058 GTPase HflX; Provisional

Probab=99.92  E-value=1.8e-23  Score=161.30  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc--ccchH------hhhcC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF--RTLTT------AYYRG   79 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~------~~~~~   79 (184)
                      .+|+++|.+|||||||+|+|++..+.....++++.+.....+...+. ..+.+|||+|..+.  ...+.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987765555666666776666666553 14789999997321  12222      23578


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEeec
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEVSC  158 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa  158 (184)
                      +|++++|+|++++.+.+....|...+..       ....++|+++|+||+|+.......   ..  ....+.+ ++.+||
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~e-------l~~~~~pvIiV~NKiDL~~~~~~~---~~--~~~~~~~~~v~ISA  344 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEE-------IDAHEIPTLLVMNKIDMLDDFEPR---ID--RDEENKPIRVWLSA  344 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHH-------hccCCCCEEEEEEcccCCCchhHH---HH--HHhcCCCceEEEeC
Confidence            9999999999999877777655554544       223578999999999986421111   11  1123455 488999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++|.|+++++++|.+.+..
T Consensus       345 ktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        345 QTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             CCCCCHHHHHHHHHHHhhh
Confidence            9999999999999988753

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.6e-23  Score=162.73  Aligned_cols=170  Identities=14%  Similarity=0.158  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccch---HhhhcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLT---TAYYRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~---~~~~~~~   80 (184)
                      ..|+|+|.||||||||+++|++........|+++.......+...+.  .+.+||+||....    ..+.   ...+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            67999999999999999999987665555566676666666666654  5999999995321    1111   2235679


Q ss_pred             cEEEEEEeCCCh----hHHHHHHHHHHHHHHhcccCC----CCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         81 MGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSN----QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        81 d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      |++++|+|+++.    +.+++...+..++..+.....    .......|++||+||+|+.+...... .........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCe
Confidence            999999999752    345555555555554310000    00124789999999999975433222 222233445789


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      ++++||+++.|+++++++|.+.+...+.
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999998877553

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=1.3e-23  Score=147.15  Aligned_cols=159  Identities=19%  Similarity=0.140  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC----cC---CCccccccceeEEEEEEEeC------------CeeEEEEEEeCCCccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE----TY---YDTYISTIGIDFKQKIIDLD------------DVPTKLQIWDTAGQER   68 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~G~~~   68 (184)
                      ++|+++|++|+|||||+++|...    .+   ..+..+.++.+.....+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999872    11   12222333333333333232            3356799999999866


Q ss_pred             cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--cHHHHHH-H
Q psy12922         69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--QTKDAQM-L  145 (184)
Q Consensus        69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~  145 (184)
                      +..........+|++++|+|++++........+.  +..         ..+.|+++|+||+|+......  ......+ +
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~---------~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l  149 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGE---------ILCKKLIVVLNKIDLIPEEERERKIEKMKKKL  149 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHH---------HcCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence            5443334456789999999998754333322221  111         125699999999998642221  1122221 1


Q ss_pred             HH------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        146 AD------NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       146 ~~------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ..      ..+++++++||++|.|++++++++.+++..
T Consensus       150 ~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            11      236789999999999999999999987754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=2.1e-23  Score=163.83  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------cccchH
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRTLTT   74 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~   74 (184)
                      .....+|+|+|.+|||||||+++|.+... .....++++.+.........+..  +.+|||||...        +.....
T Consensus        35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~  112 (472)
T PRK03003         35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAE  112 (472)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHH
Confidence            34457999999999999999999998654 23455566666666666666654  88999999652        233345


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      .+++.+|++++|+|++++.+... ..+...+..          .++|+++|+||+|+....   ......+....+ ..+
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----------~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~  177 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATATD-EAVARVLRR----------SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPH  177 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeE
Confidence            57789999999999998755432 333444432          479999999999986421   111122222233 357


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++||++|.|++++++++.+.+.+
T Consensus       178 ~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        178 PVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEEcCCCCCcHHHHHHHHhhccc
Confidence            89999999999999999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=6.5e-23  Score=159.94  Aligned_cols=161  Identities=22%  Similarity=0.188  Sum_probs=112.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch----------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT----------   73 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----------   73 (184)
                      +..++|+++|.+|+|||||+++|++... .....+.++.+.....+...+.  .+.+|||||...+....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            3458999999999999999999998654 2334455555555555555555  48999999975543321          


Q ss_pred             -HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh----
Q psy12922         74 -TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN----  148 (184)
Q Consensus        74 -~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----  148 (184)
                       ..+++.+|++++|+|++++.+..+.. ++..+..          .++|+++|+||+|+.............+...    
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  316 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL  316 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC
Confidence             23578999999999999876655543 2333332          4689999999999872111111111222222    


Q ss_pred             cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        149 YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      .+++++++||++|.|++++++++.+.+...
T Consensus       317 ~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       317 DFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            247999999999999999999998877653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=3.1e-23  Score=156.39  Aligned_cols=156  Identities=21%  Similarity=0.282  Sum_probs=107.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccch-------Hh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLT-------TA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~-------~~   75 (184)
                      .+..+|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+..++.  .+.+|||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            355799999999999999999999876632 22333444444445555554  489999999743 22221       12


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CC
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LP  152 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~  152 (184)
                      .+..+|++++|+|..+  ++... ..++..+..          .+.|.++|+||+|+.+.   ............+  ..
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----------~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~  192 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS----------LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSL  192 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----------cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcE
Confidence            4678999999999765  34343 334444443          24577889999998642   2233444444433  57


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++++||++|.|+++++++|.+.+.+
T Consensus       193 i~~iSAktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        193 LFPISALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             EEEEeccCccCHHHHHHHHHHhCCC
Confidence            9999999999999999999887654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.91  E-value=4.2e-23  Score=143.97  Aligned_cols=155  Identities=18%  Similarity=0.166  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccc----------------cccceeEEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYI----------------STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL   72 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   72 (184)
                      +|+++|.+|||||||+++|..........                ...+.......+...  ...+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            58999999999999999999876643321                122223333333333  346999999999888888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHHh--
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLADN--  148 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~--  148 (184)
                      +..+++.+|++++|+|+.++..... ..++..+..          .+.|+++|+||+|+.......  .....+....  
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG  147 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence            8888999999999999987654322 223333322          579999999999997522221  2223333322  


Q ss_pred             ------------cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        149 ------------YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       149 ------------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                                  ...+++++||++|.|+++++++|.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                        3567999999999999999999988763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=4e-23  Score=139.91  Aligned_cols=146  Identities=16%  Similarity=0.091  Sum_probs=101.6

Q ss_pred             EEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhhcCCc
Q psy12922         11 LVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYYRGAM   81 (184)
Q Consensus        11 ~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d   81 (184)
                      +++|.+|+|||||+++|..... .....+.++.+.........+  ..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            4799999999999999998642 122233444444444554444  4589999999876543        2345678899


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQ  160 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (184)
                      ++++|+|..++.+.... .....+..          ...|+++|+||+|+......     .......+. +++++|+++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----------~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~  142 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK----------SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEH  142 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh----------cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEeccc
Confidence            99999999875443332 22233322          35999999999998764322     222334565 789999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARL  174 (184)
Q Consensus       161 ~~gv~~~~~~l~~~  174 (184)
                      |.|+++++++|.+.
T Consensus       143 ~~gv~~l~~~l~~~  156 (157)
T cd01894         143 GRGIGDLLDAILEL  156 (157)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=2.9e-23  Score=134.60  Aligned_cols=114  Identities=37%  Similarity=0.599  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC--CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ||+|+|.+|||||||+++|.+....  ..+.+..+..+.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998765  23334444455545555666666699999999998888887789999999999


Q ss_pred             EeCCChhHHHHHHHH---HHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         87 YDVTNLESFQHLNYW---LKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                      ||++++.+++.+..+   +..+...        ..++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--------~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--------DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--------SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--------CCCCCEEEEEeccC
Confidence            999999999887544   5555542        45699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0075|consensus

Probab=99.91  E-value=1.6e-23  Score=134.66  Aligned_cols=160  Identities=22%  Similarity=0.394  Sum_probs=127.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++++.++|..+||||||.+....+.+..+..|+.+....  .  +.....++.+||.||+..|+.+|..|++..+++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr--k--~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE--E--eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            5688999999999999999999998887777777764433  3  33445569999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-----CCCEEEeecCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-----SLPFYEVSCKQ  160 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~  160 (184)
                      |+|+.+++.++..+..+..+...      +.-.++|++|++||.|++.  ......+.......     .+--|.+||++
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k------~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke  166 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDK------PSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKE  166 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcc------hhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcC
Confidence            99999999988887777766654      5567899999999999875  34433332222111     23368899999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIRE  177 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~  177 (184)
                      ..+++-+..||++....
T Consensus       167 ~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  167 KVNIDITLDWLIEHSKS  183 (186)
T ss_pred             CccHHHHHHHHHHHhhh
Confidence            99999999999886544

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.5e-22  Score=154.61  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=117.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----ch---HhhhcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----LT---TAYYRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~---~~~~~~~   80 (184)
                      ..|+|+|.||||||||+|+|++........|.+|.......+...+ ...+.++||||......    +.   ...+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3799999999999999999998766556667777666666665543 12489999999643211    11   2346789


Q ss_pred             cEEEEEEeCC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CCEEE
Q psy12922         81 MGILLMYDVT---NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LPFYE  155 (184)
Q Consensus        81 d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  155 (184)
                      |++++|+|++   +.+.++....|.+++....     ....+.|+++|+||+|+....+. ......+....+  .++++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~-----~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~  312 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYS-----PKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYL  312 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhh-----hhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEE
Confidence            9999999998   4456677777777776531     11246899999999998653322 223334444433  47899


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +||+++.|+++++++|.+.+.+.
T Consensus       313 ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        313 ISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             EECCCCcCHHHHHHHHHHHhhhC
Confidence            99999999999999999988653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=2.7e-23  Score=141.07  Aligned_cols=140  Identities=16%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-----ccccchHhhhcCCcEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-----RFRTLTTAYYRGAMGI   83 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~   83 (184)
                      +|+++|.+|+|||||+++|.+....  ...+.+       +.+...    .+|||||..     .+..+ ...++.+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence            7999999999999999998864321  111111       112222    269999962     22222 2346899999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC--CEEEeecCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL--PFYEVSCKQN  161 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~  161 (184)
                      ++|+|++++.+..  ..|+..+           ..++|+++++||+|+.+.   .......++...++  |++++||++|
T Consensus        69 l~v~d~~~~~s~~--~~~~~~~-----------~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g  132 (158)
T PRK15467         69 IYVHGANDPESRL--PAGLLDI-----------GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDP  132 (158)
T ss_pred             EEEEeCCCccccc--CHHHHhc-----------cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCc
Confidence            9999999876542  2232222           236789999999998652   23445566666664  8999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIREQ  178 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~  178 (184)
                      .|++++++++.+.+.+.
T Consensus       133 ~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        133 QSVQQLVDYLASLTKQE  149 (158)
T ss_pred             cCHHHHHHHHHHhchhh
Confidence            99999999998887553

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=2.9e-22  Score=137.72  Aligned_cols=155  Identities=23%  Similarity=0.226  Sum_probs=105.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----------c-hH
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----------L-TT   74 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~-~~   74 (184)
                      .++|+++|.+|+|||||++++.+... .....+.++.......+...+..  +.+|||||..+...          . ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            57999999999999999999998653 22333444444444455555544  78999999643311          1 12


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHHhc----
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNY----  149 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~----  149 (184)
                      ..+..+|++++|+|++++.+.... .+...+..          .+.|+++++||+|+.......... ...+....    
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE----------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD  148 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence            345789999999999987664433 22333322          468999999999987643222221 22232333    


Q ss_pred             CCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        150 SLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       150 ~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ..+++++||+++.|++++++++.+.
T Consensus       149 ~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         149 YAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CCceEEEeccCCCCHHHHHHHHHHh
Confidence            3689999999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1673|consensus

Probab=99.90  E-value=4.4e-23  Score=133.88  Aligned_cols=165  Identities=21%  Similarity=0.458  Sum_probs=143.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .-.++|.++|.+..|||||+-.+.+..+..++..+.+..+..+++...+....+.+||.+|++++..........+-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            34689999999999999999999999988888999999999999999999999999999999999999988889999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--Ccc---ccHHHHHHHHHhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRA---VQTKDAQMLADNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
                      |++|++.+.++..+..|+++.+.       .+..-+| ++|+||.|.--  +.+   --..+++..++-.+++.++||+.
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~-------~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts  169 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARG-------LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTS  169 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhc-------cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecc
Confidence            99999999999999999999987       4555666 78999999732  111   22234677888889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      .+.|++.+|.-+...+..
T Consensus       170 ~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             ccccHHHHHHHHHHHHhC
Confidence            999999999988777654

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=1.7e-22  Score=161.61  Aligned_cols=158  Identities=19%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc-------CCCccc------cccceeEEEEE--EEe---CCeeEEEEEEeCCCcccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET-------YYDTYI------STIGIDFKQKI--IDL---DDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~l~D~~G~~~~   69 (184)
                      -+|+++|+.++|||||+++|+...       +...+.      ...+.++....  +.+   ++..+.+.+|||||+..|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999998742       111111      11233333322  222   456688999999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY  149 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  149 (184)
                      ...+..+++.+|++++|+|++++.+.+....|...+.           .++|+++|+||+|+....  ......++...+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----------~~ipiIiViNKiDl~~~~--~~~~~~el~~~l  150 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----------NDLEIIPVINKIDLPSAD--PERVKKEIEEVI  150 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----------cCCCEEEEEECcCCCccC--HHHHHHHHHHHh
Confidence            8888889999999999999998766666655544332           367999999999986422  122234455555


Q ss_pred             CC---CEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        150 SL---PFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       150 ~~---~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++   .++++||++|.|+++++++|.+.+...
T Consensus       151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       151 GLDASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             CCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            55   379999999999999999998877543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=9.8e-23  Score=142.29  Aligned_cols=160  Identities=21%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCC------------------ccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYD------------------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE   67 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   67 (184)
                      +..+|+++|+.++|||||+++|+......                  +.....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            46899999999999999999998644211                  111122233333333312445569999999999


Q ss_pred             ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHH-HH
Q psy12922         68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQ-ML  145 (184)
Q Consensus        68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~  145 (184)
                      .|.......+..+|++++|+|+.++... .....+..+..          .++|+++|+||+|+...+.. ...+.. .+
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l  150 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----------LGIPIIVVLNKMDLIEKELEEIIEEIKEKL  150 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----------TT-SEEEEEETCTSSHHHHHHHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccccc----------cccceEEeeeeccchhhhHHHHHHHHHHHh
Confidence            8888777888999999999999876332 23344444544          57889999999998721111 111111 22


Q ss_pred             HHhc------CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        146 ADNY------SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       146 ~~~~------~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .+..      .++++++||++|.|++++++.|.+.++
T Consensus       151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            2222      357999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04163 Era Era subfamily

Probab=99.90  E-value=3e-22  Score=136.59  Aligned_cols=155  Identities=14%  Similarity=0.160  Sum_probs=103.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccc-cccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYI-STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYY   77 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~   77 (184)
                      ..+|+++|++|||||||++++.+........ +..+.......  .......+.+|||||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            5789999999999999999999865422211 11211111111  222234689999999654332        223457


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEe
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEV  156 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~  156 (184)
                      ..+|++++|+|++++.. .....+...+..          .+.|+++|+||+|+.............+.... ..+++++
T Consensus        81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~----------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (168)
T cd04163          81 KDVDLVLFVVDASEPIG-EGDEFILELLKK----------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI  149 (168)
T ss_pred             HhCCEEEEEEECCCccC-chHHHHHHHHHH----------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence            88999999999998721 112233333332          36899999999999743333333444455555 3689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARL  174 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~  174 (184)
                      |++++.|+++++++|.+.
T Consensus       150 s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         150 SALKGENVDELLEEIVKY  167 (168)
T ss_pred             EeccCCChHHHHHHHHhh
Confidence            999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.90  E-value=8.9e-23  Score=144.04  Aligned_cols=161  Identities=15%  Similarity=0.134  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEEEe-------------------------CCee----
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKIIDL-------------------------DDVP----   55 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~~~~----   55 (184)
                      ++|+++|+.|+|||||+.++.....   ..+.....+.......+..                         ....    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   1111111111111111000                         0112    


Q ss_pred             --EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         56 --TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        56 --~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                        ..+.+|||||++.+.......+..+|++++|+|++++.........+..+..         ....|+++|+||+|+..
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~---------~~~~~iiivvNK~Dl~~  151 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI---------MGLKHIIIVQNKIDLVK  151 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH---------cCCCcEEEEEEchhccC
Confidence              5789999999988877777777889999999999874211111222222322         12357999999999865


Q ss_pred             Cccc--cHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        134 QRAV--QTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       134 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ....  ......++...   .+++++++||++|+|+++++++|.+.+.+
T Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            2211  11223333332   25789999999999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0071|consensus

Probab=99.90  E-value=6.3e-23  Score=130.94  Aligned_cols=159  Identities=23%  Similarity=0.370  Sum_probs=123.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .++++|+.+|..+|||||++-.|..... ....|+++  +....+.+.+.  .+.+||.+|+++.+.+|.+|++...++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN~--kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeeee--EEeeeeccCchhhhHHHHhhccCCceEE
Confidence            5789999999999999999999887553 23455555  44445545554  4999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH-----HHhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML-----ADNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~  159 (184)
                      ||+|..+.+.+++.+..+-.+...      ..-.+.|++|.+||-|++.....  .++..+     ++.....+.++||.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~------~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~a~  161 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIIND------REMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSCAL  161 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCC------HhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccccc
Confidence            999999998888887766666554      55678999999999999874332  222222     22223446789999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIR  176 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~  176 (184)
                      +|.|+.+-+.||.+.+.
T Consensus       162 ~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  162 SGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cchhHHHHHHHHHhhcc
Confidence            99999999999988653

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=5.7e-22  Score=139.23  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=103.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccch
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTLT   73 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~   73 (184)
                      .+..++|+++|.+|||||||+++|.+..+.....++.+..........   ...+.+|||||.          +.+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            356689999999999999999999987643343444332222222222   246999999994          2333344


Q ss_pred             HhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHHh
Q psy12922         74 TAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLADN  148 (184)
Q Consensus        74 ~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~  148 (184)
                      ..++..   .+++++++|.+.+.+.... .....+..          .+.|+++++||+|+....+...  ..+......
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~  166 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE----------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF  166 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH----------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence            445543   4678888998765433221 11222222          3688999999999865333221  223334444


Q ss_pred             cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        149 YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ...+++++||++|.|++++++.|.+.+.
T Consensus       167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        167 GDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4678999999999999999999987764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.89  E-value=4.3e-22  Score=159.38  Aligned_cols=146  Identities=18%  Similarity=0.261  Sum_probs=112.2

Q ss_pred             cCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc------hHhhh--cCCcEEEE
Q psy12922         14 GDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL------TTAYY--RGAMGILL   85 (184)
Q Consensus        14 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~~i~   85 (184)
                      |++|+|||||+|++++........++++.+.....+.+++..  +++|||||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            899999999999999987766677777777777777676654  899999998776543      33333  37899999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|.++.+.   ...+..++..          .++|+++|+||+|+.+.+... .+...+.+..+++++++||++|.|++
T Consensus        79 VvDat~ler---~l~l~~ql~~----------~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~  144 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE----------LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIE  144 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh----------cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHH
Confidence            999987532   2222333332          478999999999986544443 34677888889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        166 EAFLTLARLI  175 (184)
Q Consensus       166 ~~~~~l~~~~  175 (184)
                      ++++++.+.+
T Consensus       145 eL~~~i~~~~  154 (591)
T TIGR00437       145 RLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHh
Confidence            9999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.89  E-value=3.7e-22  Score=159.61  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=115.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC---cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE---TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.|+++|++++|||||+++|++.   .+..+..++.+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999973   34445566777777666666666  56999999999999888788889999999


Q ss_pred             EEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc--cHHHHHHHHHhc----CCCEE
Q psy12922         85 LMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV--QTKDAQMLADNY----SLPFY  154 (184)
Q Consensus        85 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~  154 (184)
                      +|+|++++   .+.+.+    ..+..          .++| +++|+||+|+.+....  ...+...+....    +++++
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~----------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii  144 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL----------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF  144 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH----------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence            99999973   333332    22222          2566 9999999999753322  122344444433    57899


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++||++|.|+++++++|.+.+..
T Consensus       145 ~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       145 KTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEeCCCCCCchhHHHHHHHHHHh
Confidence            99999999999999998876654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=7.3e-22  Score=157.44  Aligned_cols=153  Identities=16%  Similarity=0.166  Sum_probs=110.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ...+|+++|++++|||||+++|....+.....++.+.......+..++. ..+.+|||||+..|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4578999999999999999999988776655555555555555555432 158999999999999988888899999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-------hcC--CCEEEe
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-------NYS--LPFYEV  156 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~  156 (184)
                      |+|++++...+... .+....          ..++|+++++||+|+....   .........       .++  .+++++
T Consensus       165 VVda~dgv~~qT~e-~i~~~~----------~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~i  230 (587)
T TIGR00487       165 VVAADDGVMPQTIE-AISHAK----------AANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPV  230 (587)
T ss_pred             EEECCCCCCHhHHH-HHHHHH----------HcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence            99998643222222 122222          3578999999999986421   112222221       222  579999


Q ss_pred             ecCCCCCHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLAR  173 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~  173 (184)
                      ||++|.|+++++++|..
T Consensus       231 SAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       231 SALTGDGIDELLDMILL  247 (587)
T ss_pred             ECCCCCChHHHHHhhhh
Confidence            99999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.89  E-value=1.4e-21  Score=159.98  Aligned_cols=153  Identities=18%  Similarity=0.239  Sum_probs=114.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc----------hHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----------TTAY   76 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------~~~~   76 (184)
                      .++|+++|+||||||||+|+|++........+.++.+.....+..+  ..++.++||||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            5789999999999999999999876655555666666655555444  445999999998765431          1223


Q ss_pred             h--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922         77 Y--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus        77 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      +  ..+|++++|+|+++.+..   ..+..++.+          .++|+++|+||+|+.+.+... ....++.+.++++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----------~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVv  146 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE----------LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVI  146 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH----------cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEE
Confidence            2  478999999999876432   234444443          468999999999987544443 346777888999999


Q ss_pred             EeecCCCCCHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      ++||++|+|++++++.+.+..
T Consensus       147 piSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        147 PLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEeecCCCHHHHHHHHHHhh
Confidence            999999999999999887754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.5e-21  Score=152.52  Aligned_cols=160  Identities=21%  Similarity=0.192  Sum_probs=111.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-----------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-----------   72 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------   72 (184)
                      ...++|+++|.+|+|||||+++|++... .....++++.+.....+...+..  +.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3569999999999999999999998653 34445556656555555555544  889999996432211           


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH----h
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD----N  148 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~  148 (184)
                      ...+++.+|++++|+|++++.+..+.. +...+..          .+.|+++|+||+|+....... .....+..    .
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----------~~~~~ivv~NK~Dl~~~~~~~-~~~~~~~~~l~~~  316 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----------AGRALVIVVNKWDLVDEKTME-EFKKELRRRLPFL  316 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------cCCcEEEEEECccCCCHHHHH-HHHHHHHHhcccc
Confidence            123578899999999999876654443 2333332          468999999999987432211 11112222    2


Q ss_pred             cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        149 YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ..++++++||++|.|++++++.+.+.....
T Consensus       317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        317 DYAPIVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999999999998876543

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=1.1e-21  Score=145.89  Aligned_cols=159  Identities=15%  Similarity=0.176  Sum_probs=104.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc--------cchHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR--------TLTTAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~   76 (184)
                      +.-.|+++|.||||||||+|+|.+..... ...+.++..........+  ...+.++||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            34579999999999999999999876532 223333322222222222  2569999999964322        222345


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEE
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYE  155 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~  155 (184)
                      +..+|++++|+|++++.+ .........+.          ..+.|+++|+||+|+.............+....+ .++++
T Consensus        82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~----------~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~  150 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK----------KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVP  150 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh----------hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence            678999999999987322 11222222232          2468999999999997433333333444444443 67999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +||+++.|+++++++|.+.+.+
T Consensus       151 iSA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        151 ISALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             ecCCCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999887653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.89  E-value=1e-21  Score=136.14  Aligned_cols=148  Identities=18%  Similarity=0.240  Sum_probs=94.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----------ccccch
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----------RFRTLT   73 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~   73 (184)
                      ....++|+++|.+|+|||||++++.+..+.....++.+.......+..++   .+.+|||||..          .+....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            46779999999999999999999998764333333332222222232332   48999999942          233333


Q ss_pred             Hhhhc---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHh
Q psy12922         74 TAYYR---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADN  148 (184)
Q Consensus        74 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~  148 (184)
                      ..+++   .++++++|+|.+++.+.... ..+..+..          ...|+++|+||+|+.....  ............
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~----------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~  160 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE----------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK  160 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence            34554   35899999999875443333 22333332          4789999999999864321  122333444444


Q ss_pred             cC--CCEEEeecCCCCCHH
Q psy12922        149 YS--LPFYEVSCKQNINID  165 (184)
Q Consensus       149 ~~--~~~~~~Sa~~~~gv~  165 (184)
                      .+  .+++++||++|+|++
T Consensus       161 ~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       161 DADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             ccCCCceEEEECCCCCCCC
Confidence            43  479999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=148.64  Aligned_cols=154  Identities=18%  Similarity=0.235  Sum_probs=120.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch--------Hhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT--------TAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~   76 (184)
                      +.++|+++|.||+|||||+|+|++.+. .....|.+|+++-...+.++|.+  ++++||+|.++-....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence            458999999999999999999999765 67778899999999999999988  9999999977544332        345


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      +.++|.+++|+|.+.+.+-++...+ .           ....+.|+++|.||.|+.........     ....+.+++.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~~-~-----------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~i  356 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLALI-E-----------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISI  356 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHHH-H-----------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEE
Confidence            7899999999999986333332221 1           13568999999999999864332211     22334578999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      |+++|+|++.+.+.|.+.+...
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999998887654

>cd00880 Era_like Era (E

Probab=99.88  E-value=1.6e-21  Score=131.86  Aligned_cols=151  Identities=19%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             EEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-------chHhhhcCCcEE
Q psy12922         12 VLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-------LTTAYYRGAMGI   83 (184)
Q Consensus        12 i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~~   83 (184)
                      ++|++|||||||++++.+.... ....+..+............ ...+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986553 33333334344433333321 34599999999765443       334577899999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      ++|+|..++....... +.....          ..+.|+++|+||+|+.........   .........+++++++||++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  148 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR----------ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALT  148 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH----------hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeec
Confidence            9999999876655544 333332          368999999999998764333322   12233344568899999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARL  174 (184)
Q Consensus       161 ~~gv~~~~~~l~~~  174 (184)
                      +.|+++++.++.+.
T Consensus       149 ~~~v~~l~~~l~~~  162 (163)
T cd00880         149 GEGIDELREALIEA  162 (163)
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.88  E-value=2e-21  Score=155.76  Aligned_cols=165  Identities=21%  Similarity=0.249  Sum_probs=115.6

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----c------cccccceeEEEE--EEEe---CCeeEEEEEEe
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----T------YISTIGIDFKQK--IIDL---DDVPTKLQIWD   62 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----~------~~~~~~~~~~~~--~~~~---~~~~~~~~l~D   62 (184)
                      |...+..-+|+++|+.++|||||+++|+...  ...     .      .....+.++...  .+.+   ++..+.+.+||
T Consensus         1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD   80 (600)
T PRK05433          1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID   80 (600)
T ss_pred             CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence            3445566799999999999999999998632  110     0      011122222222  2222   45578899999


Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA  142 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  142 (184)
                      |||+..|...+..+++.+|++++|+|++++........|.... .          .+.|+++|+||+|+.....  ....
T Consensus        81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----------~~lpiIvViNKiDl~~a~~--~~v~  147 (600)
T PRK05433         81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----------NDLEIIPVLNKIDLPAADP--ERVK  147 (600)
T ss_pred             CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----------CCCCEEEEEECCCCCcccH--HHHH
Confidence            9999999888888999999999999999875555444444322 1          3689999999999864221  2222


Q ss_pred             HHHHHhcCCC---EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        143 QMLADNYSLP---FYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       143 ~~~~~~~~~~---~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      .++...+++.   ++.+||++|.|+++++++|.+.+...
T Consensus       148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            3444445554   89999999999999999999887654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=2e-21  Score=151.60  Aligned_cols=151  Identities=20%  Similarity=0.187  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc--------ccccchHhhhcC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE--------RFRTLTTAYYRG   79 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~   79 (184)
                      +|+++|.+|||||||+|+|.+... .....+..+.+.........+..  +.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998664 23344556656666666566654  9999999963        333445567789


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeec
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSC  158 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  158 (184)
                      +|++++|+|..++.+..+ ..+...+..          .++|+++|+||+|+......    ..+ ...++. +++++||
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~----------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa  142 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK----------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISA  142 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH----------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeC
Confidence            999999999987543322 222333333          36899999999998653321    111 345566 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++|.|++++++++.+.+.+
T Consensus       143 ~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       143 EHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             CcCCChHHHHHHHHHhcCc
Confidence            9999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0076|consensus

Probab=99.88  E-value=1.8e-22  Score=133.34  Aligned_cols=167  Identities=25%  Similarity=0.373  Sum_probs=126.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCc---CCC--ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDET---YYD--TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR   78 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   78 (184)
                      ..+.+.|+|+|..+||||||+.++....   +..  ...-+++......++..++..  +.+||.+|++..+++|..|+.
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAP--LSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccce--eEEEEcCChHHHHHHHHHHHH
Confidence            3566899999999999999999876522   111  112223333333444445544  899999999999999999999


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHH---hcCCCEE
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLAD---NYSLPFY  154 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~---~~~~~~~  154 (184)
                      .++++|+++|+++++.++.....++.+...      ..-..+|+++.+||.|+.+..+..+.. ....+.   ...+++.
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~------E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~  165 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVEN------EKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQ  165 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHH------HHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccc
Confidence            999999999999999999988777777664      456799999999999998744333322 122222   3347899


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++||.+|+||++..+|+...+...
T Consensus       166 pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  166 PVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cchhhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999999988765

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=1.7e-21  Score=157.74  Aligned_cols=159  Identities=18%  Similarity=0.235  Sum_probs=110.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccce--eEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI--DFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....|+++|++++|||||+++|....+.....++.+.  ..+...+...+....+.+|||||+..|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4579999999999999999999987765444433332  23333333344456799999999999999998899999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHH---HHHhcC--CCEEEee
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQM---LADNYS--LPFYEVS  157 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~---~~~~~~--~~~~~~S  157 (184)
                      ++|+|++++........ +..+.          ..++|+++++||+|+........ ..+..   +...++  ++++++|
T Consensus       323 ILVVDA~dGv~~QT~E~-I~~~k----------~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        323 ILIIAADDGVKPQTIEA-INYIQ----------AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEECcCCCChhhHHH-HHHHH----------hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            99999987432222222 22222          35789999999999875321110 11111   112233  6899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLI  175 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~  175 (184)
                      |++|.|+++++++|....
T Consensus       392 AktG~GIdeLle~I~~l~  409 (742)
T CHL00189        392 ASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCCHHHHHHhhhhhh
Confidence            999999999999987754

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.88  E-value=1.1e-20  Score=135.81  Aligned_cols=155  Identities=20%  Similarity=0.211  Sum_probs=105.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc----c---chHhhhcCCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR----T---LTTAYYRGAM   81 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~---~~~~~~~~~d   81 (184)
                      +|+++|.+|||||||+++|++........++++.+.....+.+.+.  .+++||+||.....    .   ....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999986644444455555666666666654  48999999964332    1   1234678999


Q ss_pred             EEEEEEeCCChhH-HHHHHHHHHHHHHhcccCC-----------------------------------------------
Q psy12922         82 GILLMYDVTNLES-FQHLNYWLKNIEEVGCNSN-----------------------------------------------  113 (184)
Q Consensus        82 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------------------------------------  113 (184)
                      ++++|+|+++++. ...+...+   ...+...+                                               
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l---~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~  156 (233)
T cd01896          80 LILMVLDATKPEGHREILEREL---EGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL  156 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHH---HHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence            9999999987652 32222222   21111000                                               


Q ss_pred             --------------CCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        114 --------------QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       114 --------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                                    ..+...+|+++|+||+|+...     .+...++..  .+++++||++|.|++++++.|.+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             EccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                          022345799999999998642     222234332  4589999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=3.7e-21  Score=157.61  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=112.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccc-h
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTL-T   73 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~-~   73 (184)
                      ..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++..  +.+|||||...          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999999764 23445566667666666677765  77999999532          1111 1


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH-HHHHh----
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ-MLADN----  148 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----  148 (184)
                      ...++.+|++++|+|++++.+...... +..+..          .++|+++|+||+|+.+....  .... .+...    
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~----------~~~piIiV~NK~DL~~~~~~--~~~~~~~~~~l~~~  593 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD----------AGRALVLVFNKWDLMDEFRR--QRLERLWKTEFDRV  593 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----------cCCCEEEEEEchhcCChhHH--HHHHHHHHHhccCC
Confidence            234688999999999998877666543 333332          46899999999999653221  1111 11111    


Q ss_pred             cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        149 YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ..++++++||++|.|++++++.+.+.+.+.
T Consensus       594 ~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        594 TWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            235789999999999999999999988763

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=3e-21  Score=157.42  Aligned_cols=156  Identities=16%  Similarity=0.200  Sum_probs=110.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ....|+|+|+.++|||||+++|....+.....+..+.......+.+++  ..+.+|||||+..|..++...+..+|++++
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            457899999999999999999988777555445444444444555554  458999999999999999888899999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHH---HHHHhcC--CCEEEeecC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQ---MLADNYS--LPFYEVSCK  159 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~---~~~~~~~--~~~~~~Sa~  159 (184)
                      |+|++++...+.... +....          ..++|++|++||+|+........ ..+.   .+...++  ++++++||+
T Consensus       367 VVdAddGv~~qT~e~-i~~a~----------~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        367 VVAADDGVMPQTIEA-INHAK----------AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEECCCCCCHhHHHH-HHHHH----------hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            999987422222222 22222          35789999999999964211100 1111   1122233  789999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARL  174 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~  174 (184)
                      +|.|+++++++|...
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            999999999998754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=3.9e-21  Score=150.18  Aligned_cols=149  Identities=18%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------cccchHhhhc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRTLTTAYYR   78 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~   78 (184)
                      .+|+++|.+|||||||+++|.+... .....+..+.+.....+...+  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5799999999999999999998664 233455566666666666666  4599999999875        2222345678


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEee
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVS  157 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S  157 (184)
                      .+|++++|+|+.++.+..+. .....+..          .+.|+++|+||+|.... +   ....++ ..+++ .++++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~----------~~~piilv~NK~D~~~~-~---~~~~~~-~~lg~~~~~~iS  143 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE-EIAKILRK----------SNKPVILVVNKVDGPDE-E---ADAYEF-YSLGLGEPYPIS  143 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHHHHH----------cCCcEEEEEECccCccc-h---hhHHHH-HhcCCCCCEEEE
Confidence            99999999999875433221 11222322          37899999999996541 1   112222 34565 489999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARL  174 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~  174 (184)
                      |++|.|++++++++.+.
T Consensus       144 a~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        144 AEHGRGIGDLLDAILEE  160 (435)
T ss_pred             eeCCCCHHHHHHHHHhh
Confidence            99999999999999873

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=1.7e-21  Score=140.00  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=105.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc--------cchHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR--------TLTTAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~   76 (184)
                      +.--|+++|.||+|||||+|++.+....- ...+.+|......-+..+  ...+.++||||...-.        ......
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            44578999999999999999999987643 333334433333333223  5579999999943222        223455


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEE
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYE  155 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~  155 (184)
                      +..+|+++||+|++.+-.- .....++.+.          ..+.|+++++||.|................... ...+++
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk----------~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivp  151 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLK----------KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVP  151 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHh----------hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEE
Confidence            6889999999999864221 1222233332          247899999999998764442122222222222 347899


Q ss_pred             eecCCCCCHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +||++|.|++.+.+.+.+.+.+
T Consensus       152 iSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         152 ISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             eeccccCCHHHHHHHHHHhCCC
Confidence            9999999999999999888765

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=141.11  Aligned_cols=161  Identities=22%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cc--h
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TL--T   73 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~--~   73 (184)
                      ..++|+|+|.||+|||||+|+|++.+. .....+.++.+.-...+..++..  +.++||+|...-.         +.  .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            469999999999999999999999665 56777888888888888888887  8999999954321         11  2


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH----HHHHHhc
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA----QMLADNY  149 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~  149 (184)
                      ...+..+|.+++|+|++.+.+-++.+- ...+.          ..+.++++|+||+|+.+......+..    .......
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~----------~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l  323 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIE----------EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL  323 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH----------HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence            345678999999999998755433332 33333          35899999999999876432322222    2222222


Q ss_pred             -CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        150 -SLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                       .++++.+||++|.|+..+++++.+......
T Consensus       324 ~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         324 DFAPIVFISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             cCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence             478999999999999999999988776543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=7.2e-21  Score=143.86  Aligned_cols=150  Identities=15%  Similarity=0.075  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHhhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTAYY   77 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~   77 (184)
                      ..|+++|.||+|||||+|+|.+... ..+..|.+|.+.........+..  +.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            5799999999999999999999665 56777888888877777777776  9999999965322         1224567


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEe
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEV  156 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (184)
                      ..+|+++||+|...+-+-.+. ...+.+.          ..++|+++|+||+|...     ..........+|. .++.+
T Consensus        82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr----------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~I  145 (444)
T COG1160          82 EEADVILFVVDGREGITPADE-EIAKILR----------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPI  145 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHHH----------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEe
Confidence            889999999999875433221 2222232          25799999999999652     1122222334554 68999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~  175 (184)
                      ||.+|.|+.++++++.+.+
T Consensus       146 SA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         146 SAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             ehhhccCHHHHHHHHHhhc
Confidence            9999999999999999886

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.86  E-value=7.2e-21  Score=148.03  Aligned_cols=155  Identities=17%  Similarity=0.101  Sum_probs=105.2

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhC--cCC-----------------------------CccccccceeEEEEEE
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE--TYY-----------------------------DTYISTIGIDFKQKII   49 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~   49 (184)
                      |+.....++|+++|+.++|||||+.+|+..  ...                             .+..+..+.+.....+
T Consensus         1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~   80 (426)
T TIGR00483         1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF   80 (426)
T ss_pred             CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence            677888999999999999999999999852  111                             1122344445544444


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHH--HHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHL--NYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      ..  ..+.+.+||+||++.|.......+..+|++++|+|++++++....  ..++.....         ....|+++|+|
T Consensus        81 ~~--~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---------~~~~~iIVviN  149 (426)
T TIGR00483        81 ET--DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---------LGINQLIVAIN  149 (426)
T ss_pred             cc--CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---------cCCCeEEEEEE
Confidence            33  345699999999988876666667899999999999987432111  111222222         12468999999


Q ss_pred             CCCCCCCcc----ccHHHHHHHHHhcC-----CCEEEeecCCCCCHHH
Q psy12922        128 KSDVKTQRA----VQTKDAQMLADNYS-----LPFYEVSCKQNINIDE  166 (184)
Q Consensus       128 K~D~~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~  166 (184)
                      |+|+.+...    ....+...++...+     ++++++||++|.|+.+
T Consensus       150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            999964211    11234455555554     5799999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=2.7e-20  Score=152.55  Aligned_cols=154  Identities=15%  Similarity=0.109  Sum_probs=105.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------cccchHhhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRTLTTAYY   77 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~   77 (184)
                      ..+|+++|.+|+|||||+|+|++... .....++.+.+.........+.  .+.+|||||...        +......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT--DFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE--EEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            46899999999999999999998654 2334455555555544445554  489999999653        222334567


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      +.+|++++|+|++++-... ...+...+..          .++|+++|+||+|+....   ......+....+ ..+++|
T Consensus       353 ~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~----------~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iS  417 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTST-DERIVRMLRR----------AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPIS  417 (712)
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHh----------cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEE
Confidence            8999999999998642211 1234444433          579999999999986421   111122222223 357899


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~~  177 (184)
                      |++|.|+++++++|.+.+..
T Consensus       418 A~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCCCchHHHHHHHHhccc
Confidence            99999999999999988754

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.86  E-value=8.5e-21  Score=124.24  Aligned_cols=135  Identities=23%  Similarity=0.248  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----ccccccchHhhhcCCcEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----QERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i   84 (184)
                      ||+++|+.|||||||+++|.+.+.  .+..++...+.            -.++||||    ...+..-......++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999999665  33333332222            23589999    3344444445557899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNIN  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  163 (184)
                      ++.|++++.+.-.-.     +         ......|+|=|+||+|+... ..+.....++.+..|+ .+|++|+.+|+|
T Consensus        69 ll~dat~~~~~~pP~-----f---------a~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eG  133 (143)
T PF10662_consen   69 LLQDATEPRSVFPPG-----F---------ASMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEG  133 (143)
T ss_pred             EEecCCCCCccCCch-----h---------hcccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcC
Confidence            999999875431111     1         22356899999999999842 4455567777788887 689999999999


Q ss_pred             HHHHHHHHH
Q psy12922        164 IDEAFLTLA  172 (184)
Q Consensus       164 v~~~~~~l~  172 (184)
                      ++++.++|.
T Consensus       134 i~eL~~~L~  142 (143)
T PF10662_consen  134 IEELKDYLE  142 (143)
T ss_pred             HHHHHHHHh
Confidence            999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.2e-20  Score=148.57  Aligned_cols=155  Identities=19%  Similarity=0.254  Sum_probs=121.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc------ccchHhhh--
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF------RTLTTAYY--   77 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~~--   77 (184)
                      +..+|+++|+||+|||||+|+|++.+-.....|..+++.....+...+..  ++++|+||.-..      ......|+  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            45679999999999999999999999888999999999999998888876  999999994322      22334444  


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      ...|+++-|+|++|-+.--   .+-.++.+          -+.|++++.|+.|..+.+.+. .+..++.+.+|+|++++|
T Consensus        80 ~~~D~ivnVvDAtnLeRnL---yltlQLlE----------~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tv  145 (653)
T COG0370          80 GKPDLIVNVVDATNLERNL---YLTLQLLE----------LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTV  145 (653)
T ss_pred             CCCCEEEEEcccchHHHHH---HHHHHHHH----------cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEE
Confidence            3579999999999864422   22223333          478899999999987644333 346788889999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~  176 (184)
                      |++|.|++++++++.+...
T Consensus       146 A~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         146 AKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             eecCCCHHHHHHHHHHhcc
Confidence            9999999999998876544

>KOG0074|consensus

Probab=99.86  E-value=3.6e-21  Score=123.11  Aligned_cols=163  Identities=24%  Similarity=0.316  Sum_probs=121.8

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +...++||+++|-.++||||++..|.+.+. .+..|+.+  +..+.+.+++ .+.+.+||.+|+...+..|+.|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence            457889999999999999999999988664 23344444  5555555555 4579999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHH--HhcCCCEEEeecC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLA--DNYSLPFYEVSCK  159 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~--~~~~~~~~~~Sa~  159 (184)
                      +|+|+|.++...++++...+-++..-      ..-..+|+++.+||-|+..+........ ..++  ......+-+|||.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELlee------eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csal  162 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEE------EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSAL  162 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhh------hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccc
Confidence            99999999988898887666665542      4567899999999999754222211111 1111  1112346789999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLI  175 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~  175 (184)
                      +++|+.+-.+|+.+..
T Consensus       163 s~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  163 SLEGSTDGSDWVQSNP  178 (185)
T ss_pred             cccCccCcchhhhcCC
Confidence            9999999999887654

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.86  E-value=1.7e-20  Score=132.93  Aligned_cols=146  Identities=19%  Similarity=0.122  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC-C------------------------------ccccccceeEEEEEEEeCCeeEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY-D------------------------------TYISTIGIDFKQKIIDLDDVPTK   57 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   57 (184)
                      ||+++|++|+|||||+++|+..... .                              +..+..+.+.....+...+  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            6899999999999999999763221 0                              1112333344444443443  35


Q ss_pred             EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc
Q psy12922         58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV  137 (184)
Q Consensus        58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  137 (184)
                      +.+|||||+..|.......+..+|++++|+|++++..-. .......+..         ....++++|+||+|+......
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~---------~~~~~iIvviNK~D~~~~~~~  148 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL---------LGIRHVVVAVNKMDLVDYSEE  148 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH---------cCCCcEEEEEEchhcccCCHH
Confidence            889999999887665666778999999999998753222 1222222222         123457889999998642211


Q ss_pred             ----cHHHHHHHHHhcC---CCEEEeecCCCCCHHH
Q psy12922        138 ----QTKDAQMLADNYS---LPFYEVSCKQNINIDE  166 (184)
Q Consensus       138 ----~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~  166 (184)
                          .......+....+   .+++++||++|.|+.+
T Consensus       149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence                1123344555555   3589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG1489|consensus

Probab=99.85  E-value=5.3e-20  Score=132.83  Aligned_cols=158  Identities=17%  Similarity=0.233  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch----Hh---hhcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT----TA---YYRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----~~---~~~~~   80 (184)
                      ..|.++|.||+|||||++++++........+++|......++.+++.. .+.+-|.||.-+-..+.    ..   .+..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            468899999999999999999987777778888877777777776644 38899999954433322    22   34678


Q ss_pred             cEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEe
Q psy12922         81 MGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEV  156 (184)
Q Consensus        81 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~  156 (184)
                      +.++||+|++.+   ..+++++.+..++..+.     ..-.+.|.++|+||+|+.+   .....+.+++..+.-+ ++++
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye-----k~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pv  347 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYE-----KGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPV  347 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHh-----hhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEe
Confidence            999999999998   77888887777777653     3456899999999999862   2223356666666654 8999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARL  174 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~  174 (184)
                      ||++++|+..+++.|.+.
T Consensus       348 sA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  348 SAKSGEGLEELLNGLREL  365 (366)
T ss_pred             eeccccchHHHHHHHhhc
Confidence            999999999999877653

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.85  E-value=8e-20  Score=145.68  Aligned_cols=155  Identities=22%  Similarity=0.192  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC----------------CeeEEEEEEeCCCcccccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------------DVPTKLQIWDTAGQERFRT   71 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~~~   71 (184)
                      .-|+++|++++|||||+++|.+..+......+.+.......+..+                .....+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            468999999999999999999876643322222211111111111                0011388999999999999


Q ss_pred             chHhhhcCCcEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-----------
Q psy12922         72 LTTAYYRGAMGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-----------  137 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-----------  137 (184)
                      ++..+++.+|++++|+|++++   .+++.+.    .+..          .++|+++++||+|+...+..           
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~----------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sa  150 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----------YKTPFVVAANKIDRIPGWRSHEGRPFMESFS  150 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH----------cCCCEEEEEECCCccchhhhccCchHHHHHH
Confidence            988899999999999999873   3333322    2222          36899999999998642210           


Q ss_pred             -cHHH------------HHHHHH------------hc--CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        138 -QTKD------------AQMLAD------------NY--SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       138 -~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                       ....            ...+..            .+  .++++++||++|+|+++++++|.....
T Consensus       151 k~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       151 KQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence             0000            001111            11  368999999999999999998876443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.85  E-value=1.3e-19  Score=135.23  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=120.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc---------cccccchHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ---------ERFRTLTTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~   75 (184)
                      +.-..|.++|.+|||||||+|+|++........-+.+.+.....+.+.+ ...+.+.||.|-         +.|.+....
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4557899999999999999999998777666677777777777777775 335889999992         233333333


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                       ...+|+++.|+|+++|+..+.+..-..-+..       .....+|+++|.||.|+.....    .......... ..+.
T Consensus       269 -~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-------l~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~  335 (411)
T COG2262         269 -VKEADLLLHVVDASDPEILEKLEAVEDVLAE-------IGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVF  335 (411)
T ss_pred             -hhcCCEEEEEeecCChhHHHHHHHHHHHHHH-------cCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEE
Confidence             3679999999999999887777777777766       4556799999999999765333    1111112222 4799


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +||++|+|++.+.+.|.+.+...
T Consensus       336 iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         336 ISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             EEeccCcCHHHHHHHHHHHhhhc
Confidence            99999999999999999887743

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=120.37  Aligned_cols=158  Identities=22%  Similarity=0.297  Sum_probs=116.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCC--------Ccccc--ccceeEEEEEEEeCCeeEEEEEEeCCCccccccch
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY--------DTYIS--TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT   73 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   73 (184)
                      ...+.+|+|.|+.++||||++++++.....        ..+..  .+++........+.+ .+.+.+++|||+++|.-+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence            456789999999999999999999986631        11111  233333333333333 2458999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh--cCC
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN--YSL  151 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~  151 (184)
                      ..+.+.++++++++|.+.+..+ +....++.+..       .+  .+|++|++||.|+...+...  ...+....  .+.
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-------~~--~ip~vVa~NK~DL~~a~ppe--~i~e~l~~~~~~~  153 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-------RN--PIPVVVAINKQDLFDALPPE--KIREALKLELLSV  153 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-------cc--CCCEEEEeeccccCCCCCHH--HHHHHHHhccCCC
Confidence            9999999999999999998877 55555555655       12  29999999999998743332  23333332  488


Q ss_pred             CEEEeecCCCCCHHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      +.++.+|.+++|+.+.++.+...
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ceeeeecccchhHHHHHHHHHhh
Confidence            99999999999999988877654

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.84  E-value=5.6e-20  Score=129.67  Aligned_cols=120  Identities=21%  Similarity=0.334  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC-cEEEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA-MGILLMY   87 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~   87 (184)
                      +|+++|++|||||||+++|..+.+.....++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998765443332 2222222222223456799999999999988888888998 9999999


Q ss_pred             eCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         88 DVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        88 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      |+++. .++.....++..+.....    .....+|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~----~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLE----KVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHh----hccCCCCEEEEecchhhcc
Confidence            99987 667776666554433110    2246899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.84  E-value=4.2e-20  Score=142.69  Aligned_cols=163  Identities=17%  Similarity=0.158  Sum_probs=105.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC---CccccccceeEEEEE--------------EEe----CC------eeEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY---DTYISTIGIDFKQKI--------------IDL----DD------VPTK   57 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~   57 (184)
                      +..++|+++|++++|||||+++|......   .+.....+.......              +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            46799999999999999999999763221   111111111111000              000    11      1356


Q ss_pred             EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc
Q psy12922         58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV  137 (184)
Q Consensus        58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  137 (184)
                      +.+||+||++.|...+...+..+|++++|+|++++.........+..+..         ....|+++|+||+|+......
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---------~gi~~iIVvvNK~Dl~~~~~~  152 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---------IGIKNIVIVQNKIDLVSKEKA  152 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---------cCCCeEEEEEEccccCCHHHH
Confidence            89999999999988777778889999999999965311222223333332         123578999999998753221


Q ss_pred             --cHHHHHHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        138 --QTKDAQMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       138 --~~~~~~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                        ...+...+....   +++++++||++|+|+++++++|...+.
T Consensus       153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence              112233333322   578999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=8.7e-20  Score=142.01  Aligned_cols=153  Identities=18%  Similarity=0.131  Sum_probs=100.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD   52 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   52 (184)
                      ....++|+++|++++|||||+++|+....                               ..+..+.++.+.....+.. 
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence            45679999999999999999999984221                               0112344555555444443 


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                       ..+.+.+|||||++.|.......+..+|++++|+|++++..... ...++..+..         ....|+++++||+|+
T Consensus        82 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---------~~~~~iivviNK~Dl  151 (425)
T PRK12317         82 -DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---------LGINQLIVAINKMDA  151 (425)
T ss_pred             -CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---------cCCCeEEEEEEcccc
Confidence             34569999999998876655555688999999999986212211 2222222322         123579999999998


Q ss_pred             CCCcc----ccHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922        132 KTQRA----VQTKDAQMLADNYS-----LPFYEVSCKQNINIDEA  167 (184)
Q Consensus       132 ~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~  167 (184)
                      .....    ....++..+....+     ++++++||++|.|+++.
T Consensus       152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            65211    11223444444444     57999999999999863

>KOG0072|consensus

Probab=99.84  E-value=6.1e-21  Score=122.41  Aligned_cols=164  Identities=20%  Similarity=0.247  Sum_probs=120.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+.+.+|+++|..|+||++++-++..++.. ...|+.+....  .+.+  +...+.+||.+|+-..+..|..|+.+.|++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence            357899999999999999999888877753 33555554333  3333  444599999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |+|+|.++.+........+-.+..-      ..-....++|++||.|.......++.   ......++.-..++++||.+
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E------~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k  163 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQE------EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK  163 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhcc------HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence            9999999988876665444333331      33456888999999998642111111   11222223346899999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIREQ  178 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~  178 (184)
                      |+|++...+|+.+.+.+.
T Consensus       164 g~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  164 GEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccCCcHHHHHHHHHHhcc
Confidence            999999999999887653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.84  E-value=3.3e-19  Score=124.74  Aligned_cols=145  Identities=14%  Similarity=0.121  Sum_probs=95.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      .++|+++|++++|||||+++|+....                ..+..+..+.+..  ...+......+.++||||+..|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence            58999999999999999999986310                0111223333333  23333445568999999998877


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHHHHHH
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDAQMLA  146 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~  146 (184)
                      ......+..+|++++|+|+..+-.. .....+..+..          .++| +++++||+|+....+..   ..++..+.
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----------~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l  148 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----------VGVPYIVVFLNKADMVDDEELLELVEMEVRELL  148 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----------cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence            7667777899999999999865322 22333444443          3455 77999999986422211   12334444


Q ss_pred             Hhc-----CCCEEEeecCCCCCH
Q psy12922        147 DNY-----SLPFYEVSCKQNINI  164 (184)
Q Consensus       147 ~~~-----~~~~~~~Sa~~~~gv  164 (184)
                      ...     +++++++||++|.++
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            333     378999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.84  E-value=8.7e-20  Score=140.94  Aligned_cols=167  Identities=15%  Similarity=0.129  Sum_probs=105.4

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEEE------------------eC--C----e
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKIID------------------LD--D----V   54 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~------------------~~--~----~   54 (184)
                      ++.+..++|+++|+.++|||||+.+|.+...   ..+.....+.........                  .+  +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            3456779999999999999999999965321   112122222222110000                  01  1    1


Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      ...+.+|||||+..|.......+..+|++++|+|++++.........+..+..         ....|+++|+||+|+.+.
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~---------~~i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI---------IGIKNIVIVQNKIDLVSK  154 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH---------cCCCcEEEEEEeeccccc
Confidence            25689999999988766555556678999999999965311111222222322         123478999999999753


Q ss_pred             cccc--HHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        135 RAVQ--TKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       135 ~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ....  ......+...   .+.+++++||++|.|+++++++|.+.+..
T Consensus       155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            2221  2233333332   25789999999999999999999887653

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.84  E-value=2e-19  Score=122.95  Aligned_cols=152  Identities=19%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccchHhhhc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTLTTAYYR   78 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~   78 (184)
                      .|+++|.+|||||||++.+.+........++.+.+.....+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996544333344444333333333333   589999999432          3333333443


Q ss_pred             ---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHH--hcCC
Q psy12922         79 ---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLAD--NYSL  151 (184)
Q Consensus        79 ---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~--~~~~  151 (184)
                         +.+++++++|...+.+... ......+..          ...|+++|+||+|+........  ........  ....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~----------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~  146 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEID-LEMLDWLEE----------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP  146 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhH-HHHHHHHHH----------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence               4578899999986532211 122223332          2589999999999854222211  11222222  3346


Q ss_pred             CEEEeecCCCCCHHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      +++++||+++.|+.+++++|.+.
T Consensus       147 ~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         147 PIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHh
Confidence            89999999999999999998865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=4.4e-19  Score=121.28  Aligned_cols=159  Identities=18%  Similarity=0.240  Sum_probs=108.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccchH
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLTT   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~   74 (184)
                      +....|+++|.+|+|||||||+|++..-......+++.+.....+.+.+.   +.++|.||          .+.+..+..
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            34578999999999999999999997643344445555555555656654   88999999          234555566


Q ss_pred             hhhc---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHH-HHHHh
Q psy12922         75 AYYR---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQ-MLADN  148 (184)
Q Consensus        75 ~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~~~~  148 (184)
                      .|++   +..++++++|+..+..-.+. ..++-+..          .++|+++|+||+|.....+...  .... .+...
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~  167 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP  167 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence            6765   35778889999865433222 33344433          6899999999999876433322  1122 22222


Q ss_pred             cCCC--EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        149 YSLP--FYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       149 ~~~~--~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ....  ++.+|+.++.|++++...|.+.+.+
T Consensus       168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2222  7889999999999999988887654

>PRK10218 GTP-binding protein; Provisional

Probab=99.83  E-value=4.5e-19  Score=141.80  Aligned_cols=161  Identities=16%  Similarity=0.173  Sum_probs=112.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh--CcCCCc------------cccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD--ETYYDT------------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT   71 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   71 (184)
                      .--+|+++|+.++|||||+++|+.  +.+...            .....+..+......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            346899999999999999999987  333221            122344455555555555567799999999999998


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHH----
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLA----  146 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~----  146 (184)
                      .+..+++.+|++++|+|+.++... ....++..+..          .++|.++|+||+|....+... ..++..+.    
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----------~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~  152 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----------YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD  152 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----------cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC
Confidence            889999999999999999875322 22333333333          468899999999986532211 12222222    


Q ss_pred             ---HhcCCCEEEeecCCCC----------CHHHHHHHHHHHHHH
Q psy12922        147 ---DNYSLPFYEVSCKQNI----------NIDEAFLTLARLIRE  177 (184)
Q Consensus       147 ---~~~~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~~  177 (184)
                         ....+|++.+||++|.          |+..+++.|.+.+..
T Consensus       153 ~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        153 ATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             ccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence               1235789999999998          588888888877654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.83  E-value=1.9e-19  Score=144.07  Aligned_cols=158  Identities=21%  Similarity=0.266  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC--cCCCc------------cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE--TYYDT------------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT   74 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   74 (184)
                      +|+|+|+.++|||||+++|+..  .+...            .....+..+......+....+.+.+|||||+..|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999862  22111            011222333333333333456799999999999988888


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHH-------
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLA-------  146 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~-------  146 (184)
                      .+++.+|++++|+|+.++. ......++..+..          .++|+++|+||+|+.+.+... ..+...+.       
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----------~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~  151 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----------LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD  151 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----------CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence            8999999999999998642 3344556665554          468999999999986533211 22233332       


Q ss_pred             HhcCCCEEEeecCCCC----------CHHHHHHHHHHHHHH
Q psy12922        147 DNYSLPFYEVSCKQNI----------NIDEAFLTLARLIRE  177 (184)
Q Consensus       147 ~~~~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~~  177 (184)
                      ....++++.+||++|.          |+..+++.|.+.+..
T Consensus       152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            2235789999999996          799999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.82  E-value=7.4e-19  Score=141.25  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc---CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET---YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      -|+++|+.++|||||+++|++..   +..+.....+.+.....+..++ ...+.+||+||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            48899999999999999999633   3344445555555444443332 2348999999999887766677889999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc--HHHHHHHHHhcC---CCEEEeecC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ--TKDAQMLADNYS---LPFYEVSCK  159 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~  159 (184)
                      |+|++++-. ......+..+..          .++| +++|+||+|+.+.....  ..+...+....+   ++++++||+
T Consensus        81 VVda~eg~~-~qT~ehl~il~~----------lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~  149 (614)
T PRK10512         81 VVACDDGVM-AQTREHLAILQL----------TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT  149 (614)
T ss_pred             EEECCCCCc-HHHHHHHHHHHH----------cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence            999987321 112222222322          2344 67999999986532211  223344444333   689999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      +|.|++++++.|.+....
T Consensus       150 tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        150 EGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCHHHHHHHHHhhcc
Confidence            999999999999875443

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.82  E-value=1.4e-19  Score=129.16  Aligned_cols=146  Identities=16%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeCCeeEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLDDVPTK   57 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   57 (184)
                      +|+++|++++|||||+.+|+...-                               ..+..+.++.+.....+...  ...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence            589999999999999999864210                               01112223334434444444  456


Q ss_pred             EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH------HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES------FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      +.+|||||+..+.......+..+|++++|+|++++..      .......+.....         ....|+++|+||+|+
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiivvNK~Dl  149 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---------LGVKQLIVAVNKMDD  149 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---------cCCCeEEEEEEcccc
Confidence            9999999998777666667788999999999987421      1111222222222         124689999999998


Q ss_pred             CCC--ccc----cHHHHHHHHHhc-----CCCEEEeecCCCCCHH
Q psy12922        132 KTQ--RAV----QTKDAQMLADNY-----SLPFYEVSCKQNINID  165 (184)
Q Consensus       132 ~~~--~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~  165 (184)
                      ...  ...    ....+.......     +++++++||++|+|++
T Consensus       150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            732  111    111222223333     3679999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=6.4e-19  Score=128.06  Aligned_cols=158  Identities=18%  Similarity=0.161  Sum_probs=117.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc--cccccc-------hHhhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ--ERFRTL-------TTAYY   77 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~~   77 (184)
                      ...|+|.|.||+|||||+++++.........|+++.......+...+.  +++++||||.  ......       ..+.-
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~--R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL--RIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc--eEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            467999999999999999999999988888999998888888766665  4999999992  111111       11222


Q ss_pred             cCCcEEEEEEeCCC--hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEE
Q psy12922         78 RGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFY  154 (184)
Q Consensus        78 ~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~  154 (184)
                      .-.++++|++|++.  +-+++.-..++.++...         .+.|+++|+||.|..+.+........  ....+. ...
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---------f~~p~v~V~nK~D~~~~e~~~~~~~~--~~~~~~~~~~  314 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---------FKAPIVVVINKIDIADEEKLEEIEAS--VLEEGGEEPL  314 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---------cCCCeEEEEecccccchhHHHHHHHH--HHhhcccccc
Confidence            34688999999984  34578888888888873         44999999999998864444433322  333343 467


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .+++..+.+++.+.+.+.....+
T Consensus       315 ~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         315 KISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ceeeeehhhHHHHHHHHHHHhhc
Confidence            88999999999888777776443

>KOG4423|consensus

Probab=99.82  E-value=9.1e-22  Score=131.43  Aligned_cols=170  Identities=33%  Similarity=0.546  Sum_probs=145.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCee-EEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVP-TKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      +.-++++|+|..|+|||+++.++....+...+..+++.++..+.+..+... +++.+||..|++++..+..-+++.+.+.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            345789999999999999999999999999999999999888877665543 4679999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHHHHHHhcCC-CEEEeecCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQMLADNYSL-PFYEVSCKQN  161 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (184)
                      ++|+|+++.-+++....|.+.+......   ++...+|+++.+||||....... .......+.++++. .++++|+|.+
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qL---png~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken  179 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQL---PNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN  179 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccC---CCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence            9999999999999999999988775433   66778999999999998763222 23556778888886 7999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIRE  177 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~  177 (184)
                      .++.++-+.+.+.+..
T Consensus       180 kni~Ea~r~lVe~~lv  195 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILV  195 (229)
T ss_pred             cChhHHHHHHHHHHHh
Confidence            9999999999887654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.82  E-value=9.5e-19  Score=139.97  Aligned_cols=156  Identities=20%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccc----cceeEEEEEEE--eCCee-----E-----EEEEEeCCCcccc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYIST----IGIDFKQKIID--LDDVP-----T-----KLQIWDTAGQERF   69 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~G~~~~   69 (184)
                      ....|+++|++++|||||+++|.+..........    .+..+......  ..+..     .     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            3467999999999999999999876543222221    11111111100  00111     1     2689999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--------
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--------  138 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--------  138 (184)
                      ..++...+..+|++++|+|+++   +.+++.+.    .+..          .++|+++++||+|+...+...        
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~----------~~vpiIvviNK~D~~~~~~~~~~~~~~e~  150 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR----------RKTPFVVAANKIDRIPGWKSTEDAPFLES  150 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH----------cCCCEEEEEECcCCchhhhhhcCchHHHH
Confidence            9888888899999999999997   44443332    2222          478999999999985321100        


Q ss_pred             -----H--H--------HHHHHHHh---------------cCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        139 -----T--K--------DAQMLADN---------------YSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       139 -----~--~--------~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                           .  .        ........               ..++++++||++|.|++++++.+...+
T Consensus       151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                 0  0        00001111               135789999999999999998886544

>KOG0096|consensus

Probab=99.81  E-value=2.6e-19  Score=120.05  Aligned_cols=162  Identities=30%  Similarity=0.583  Sum_probs=137.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .++++++|..|.||||+.++...+.+...+.++.+.+...-....+-..+++..|||.|++.+......++-+....+++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            68999999999999999999999999999999999887776664444468899999999999999998888899999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++...++.....|...+...        +.++|+++.+||.|.....  .......+-++.++.+++.||+++.|...
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv--------~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nfek  159 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRV--------RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFER  159 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHH--------hcCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccccc
Confidence            9999999999999999888763        5679999999999987532  11122334455678999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        167 AFLTLARLIREQ  178 (184)
Q Consensus       167 ~~~~l~~~~~~~  178 (184)
                      -|.|+...+...
T Consensus       160 PFl~LarKl~G~  171 (216)
T KOG0096|consen  160 PFLWLARKLTGD  171 (216)
T ss_pred             chHHHhhhhcCC
Confidence            999999877543

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=9e-19  Score=124.59  Aligned_cols=113  Identities=22%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCcc-----------------ccccceeE--EEEEEEe---CCeeEEEEEEeCCCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTY-----------------ISTIGIDF--KQKIIDL---DDVPTKLQIWDTAGQ   66 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~--~~~~~~~---~~~~~~~~l~D~~G~   66 (184)
                      +|+++|+.|+|||||+++|.........                 ....+..+  ....+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999874332110                 01111122  1122212   345678999999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      ..+......++..+|++++|+|+++..+... ..++.....          .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----------~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----------EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------cCCCEEEEEECcccC
Confidence            9988778888899999999999987654432 333333332          348999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.80  E-value=2.7e-18  Score=132.27  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ...+.++|+++|+.++|||||+++|+....                ..+..+..+.+..  ...+......+.++||||+
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh   85 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGH   85 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCH
Confidence            346679999999999999999999986211                1111233333333  3334444456899999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDA  142 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~  142 (184)
                      ..|.......+..+|++++|+|++.+.... ....+..+..          .++| +++++||+|+....+..   ..+.
T Consensus        86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~----------~g~~~~IvviNK~D~~~~~~~~~~i~~~i  154 (394)
T PRK12736         86 ADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ----------VGVPYLVVFLNKVDLVDDEELLELVEMEV  154 (394)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----------cCCCEEEEEEEecCCcchHHHHHHHHHHH
Confidence            888766666678899999999998642222 2233333433          3567 67899999986432221   1233


Q ss_pred             HHHHHhcC-----CCEEEeecCCCC--------CHHHHHHHHHHHHH
Q psy12922        143 QMLADNYS-----LPFYEVSCKQNI--------NIDEAFLTLARLIR  176 (184)
Q Consensus       143 ~~~~~~~~-----~~~~~~Sa~~~~--------gv~~~~~~l~~~~~  176 (184)
                      ..+....+     ++++++||++|.        ++..+++.+.+.+.
T Consensus       155 ~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        155 RELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            44443333     689999999983        56777777776654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.80  E-value=2.5e-18  Score=132.56  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCc----------------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDET----------------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+.+..++|+++|+.++|||||+++|+...                ...+..+..+.+..  .+.++.....+.+|||||
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpG   84 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPG   84 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCc
Confidence            356778999999999999999999997420                01122234444443  333444455689999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCCCcccc---HHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKTQRAVQ---TKD  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~  141 (184)
                      ++.|.......+..+|++++|+|+..+.... ....+..+..          .++|.+ +++||+|+.+..+..   ..+
T Consensus        85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~  153 (394)
T TIGR00485        85 HADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----------VGVPYIVVFLNKCDMVDDEELLELVEME  153 (394)
T ss_pred             hHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----------cCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence            9988766666667899999999998742222 2233333433          256655 689999987532222   123


Q ss_pred             HHHHHHhcC-----CCEEEeecCCCC
Q psy12922        142 AQMLADNYS-----LPFYEVSCKQNI  162 (184)
Q Consensus       142 ~~~~~~~~~-----~~~~~~Sa~~~~  162 (184)
                      ...+....+     ++++++||++|.
T Consensus       154 i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       154 VRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHhcCCCccCccEEECcccccc
Confidence            445555443     789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.80  E-value=6.5e-18  Score=122.56  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=116.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cchHhhhc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TLTTAYYR   78 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~   78 (184)
                      -..+|+++|+|++|||||+++|++........++++.......+.+.+..  +++.|+||.-...       .-.....+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeec
Confidence            34789999999999999999999988777778888888888888888776  9999999832211       22345679


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC--------------------------------------------
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ--------------------------------------------  114 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  114 (184)
                      +||++++|+|+..+.+.  ......++...+...+.                                            
T Consensus       140 ~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~  217 (365)
T COG1163         140 NADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD  217 (365)
T ss_pred             cCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence            99999999999965442  22233334443333222                                            


Q ss_pred             -----------------CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        115 -----------------NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       115 -----------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                                       .+...+|.++|.||.|+...     .....+.+..  ..+.+||+.+.|++++.+.|++.+.
T Consensus       218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                             11335899999999998752     2223333333  6899999999999999999998764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.79  E-value=3.6e-18  Score=124.73  Aligned_cols=165  Identities=15%  Similarity=0.189  Sum_probs=121.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccchHhh---hcCCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLTTAY---YRGAM   81 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~~---~~~~d   81 (184)
                      -|.++|.||+|||||++++++........|++|.......+.+.+ ...|.+-|.||.-+.    ..+=..|   +..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            478999999999999999999888777778887776666666532 224899999995332    2222233   45689


Q ss_pred             EEEEEEeCCChh---HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEee
Q psy12922         82 GILLMYDVTNLE---SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEVS  157 (184)
Q Consensus        82 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S  157 (184)
                      +++.|+|++..+   ..++......++..+.     ..-.+.|.+||+||+|+....+........+....+.. ++.+|
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~-----~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS  314 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYS-----PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS  314 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhh-----HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence            999999998544   3666666666776654     34578999999999997665555555555566555543 22299


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      |.+++|++++...+.+.+.+..
T Consensus       315 a~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         315 ALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hhcccCHHHHHHHHHHHHHHhh
Confidence            9999999999999999888765

>CHL00071 tufA elongation factor Tu

Probab=99.79  E-value=5.2e-18  Score=131.25  Aligned_cols=149  Identities=13%  Similarity=0.097  Sum_probs=98.3

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+....++|+++|++++|||||+++|+....                ..+..+..+.+.....  +......+.++||||
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPG   84 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPG   84 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCC
Confidence            4557789999999999999999999986411                1122233333333333  333445688999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKD  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~  141 (184)
                      +..|.......+..+|++++|+|+..+.. ......+..+..          .++| +++++||+|+....+..   ..+
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----------~g~~~iIvvvNK~D~~~~~~~~~~~~~~  153 (409)
T CHL00071         85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----------VGVPNIVVFLNKEDQVDDEELLELVELE  153 (409)
T ss_pred             hHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----------cCCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence            98877666667789999999999986432 222333344433          3567 77899999997532211   123


Q ss_pred             HHHHHHhcC-----CCEEEeecCCCCC
Q psy12922        142 AQMLADNYS-----LPFYEVSCKQNIN  163 (184)
Q Consensus       142 ~~~~~~~~~-----~~~~~~Sa~~~~g  163 (184)
                      +..+....+     ++++++||.+|.+
T Consensus       154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        154 VRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHHhCCCCCcceEEEcchhhccc
Confidence            444444432     6899999999874

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.79  E-value=1e-17  Score=119.63  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCcccc--------------ccc---------eeEEEEE-------------EEeC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYIS--------------TIG---------IDFKQKI-------------IDLD   52 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--------------~~~---------~~~~~~~-------------~~~~   52 (184)
                      ||+++|+.++|||||+++|..+.+......              ..+         .+.....             -.+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997554221110              000         0000000             0011


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                      .....+.++|+||++.|.......+.  .+|++++|+|+..+.. .....++..+..          .++|+++|+||+|
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----------~~ip~ivvvNK~D  149 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----------LNIPVFVVVTKID  149 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----------cCCCEEEEEECcc
Confidence            22346899999999888665544443  6899999999986533 222334444443          4688999999999


Q ss_pred             CCCCccccH--HHHHHHHH--------------------------hcCCCEEEeecCCCCCHHHHHHHHHH
Q psy12922        131 VKTQRAVQT--KDAQMLAD--------------------------NYSLPFYEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       131 ~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      +.+......  .....+..                          ...+|++.+||.+|+|+++++..|..
T Consensus       150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            864222111  11222221                          11248999999999999998876643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12735 elongation factor Tu; Reviewed

Probab=99.79  E-value=5.6e-18  Score=130.57  Aligned_cols=162  Identities=13%  Similarity=0.135  Sum_probs=105.2

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      ++....++|+++|++++|||||+++|+....                ..+..+..+.+...  ..+......+.++||||
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~--~~~~~~~~~i~~iDtPG   84 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSH--VEYETANRHYAHVDCPG   84 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEee--eEEcCCCcEEEEEECCC
Confidence            3557789999999999999999999986210                11112233333333  33333445689999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCCCccc---cHHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKTQRAV---QTKD  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~  141 (184)
                      +..|.......+..+|++++|+|+..+.. .....++..+..          .++|.+ +++||+|+....+.   ...+
T Consensus        85 h~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----------~gi~~iivvvNK~Dl~~~~~~~~~~~~e  153 (396)
T PRK12735         85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----------VGVPYIVVFLNKCDMVDDEELLELVEME  153 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----------cCCCeEEEEEEecCCcchHHHHHHHHHH
Confidence            98877666666788999999999986422 222233333433          357755 57999998642221   1123


Q ss_pred             HHHHHHhc-----CCCEEEeecCCCC----------CHHHHHHHHHHHHH
Q psy12922        142 AQMLADNY-----SLPFYEVSCKQNI----------NIDEAFLTLARLIR  176 (184)
Q Consensus       142 ~~~~~~~~-----~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~  176 (184)
                      ...+....     .++++++||++|.          ++.++++.|.+.+.
T Consensus       154 i~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            44444443     2689999999984          67777777776543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.78  E-value=1.4e-17  Score=117.08  Aligned_cols=160  Identities=14%  Similarity=0.142  Sum_probs=97.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccce-eE--EEEEEEeCCeeEEEEEEeCCCccccccchHhh-----hc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI-DF--KQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY-----YR   78 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~~   78 (184)
                      +++|+++|.+|+|||||+|+|.+...........+. ..  ....+..+. ...+.+|||||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999985543222222111 11  111111111 2258999999975433222233     56


Q ss_pred             CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc-----------ccHHHHHH--
Q psy12922         79 GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA-----------VQTKDAQM--  144 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~--  144 (184)
                      .+|+++++.+.    .+... ..++..+..          ...|+++|+||+|+....+           ........  
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~----------~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~  145 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQC----------MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC  145 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHH----------hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence            78988887542    22222 345555544          2679999999999843111           00111111  


Q ss_pred             --HHHhcC---CCEEEeecC--CCCCHHHHHHHHHHHHHHHHhh
Q psy12922        145 --LADNYS---LPFYEVSCK--QNINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       145 --~~~~~~---~~~~~~Sa~--~~~gv~~~~~~l~~~~~~~~~~  181 (184)
                        .....+   .++|.+|+.  .+.++..+.+.|...+.+.++-
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence              111212   368999999  6799999999999999886653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.78  E-value=4.1e-18  Score=121.22  Aligned_cols=113  Identities=20%  Similarity=0.176  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC----------------CccccccceeEEEEEEEeC--------CeeEEEEEEeCC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY----------------DTYISTIGIDFKQKIIDLD--------DVPTKLQIWDTA   64 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~D~~   64 (184)
                      +|+++|+.++|||||+.+|......                .+.....+.......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999864311                0111111212111122222        446789999999


Q ss_pred             CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      |+..|......+++.+|++++|+|+.++...+.. ..+.....          .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----------~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----------ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECCCcc
Confidence            9999998888899999999999999986544332 22233322          357999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1423|consensus

Probab=99.77  E-value=1.3e-17  Score=120.03  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=103.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc------c------cc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER------F------RT   71 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~------~~   71 (184)
                      ..+.++|+++|.||+|||||.|.+.+...........++....--+ +....+.+.++||||.-.      +      ..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            3567999999999999999999999988755555544433333333 444566799999999321      1      11


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc-------------ccc
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR-------------AVQ  138 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~~~  138 (184)
                      -....++.+|.+++|+|+++....-.. ..+..+..         ...+|-++|+||.|...+.             +..
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~---------ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~  217 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE---------YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA  217 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH---------HhcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence            123456889999999999964332111 11222222         2478889999999974321             111


Q ss_pred             HHHHHHHHHhc-CCC----------------EEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        139 TKDAQMLADNY-SLP----------------FYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       139 ~~~~~~~~~~~-~~~----------------~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .. ..++..+. ..+                +|.+||++|+|++++.++|...+.
T Consensus       218 ~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  218 KL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             hh-hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            10 11111111 122                788999999999999999877653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.77  E-value=1.1e-17  Score=130.30  Aligned_cols=152  Identities=18%  Similarity=0.143  Sum_probs=102.3

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEE
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKII   49 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~   49 (184)
                      |......++|+++|+.++|||||+.+|+...-                               ..+.....+.+..  ..
T Consensus         1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~--~~   78 (447)
T PLN00043          1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIA--LW   78 (447)
T ss_pred             CCCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEE--EE
Confidence            55677889999999999999999998874211                               0111122333333  33


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHH-------HHHHHHHHHHHhcccCCCCCCCCC-e
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ-------HLNYWLKNIEEVGCNSNQNASPDV-V  121 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-p  121 (184)
                      ......+.+.++|+||+..|.......+..+|++++|+|++++ .++       .....+.....          .++ +
T Consensus        79 ~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----------~gi~~  147 (447)
T PLN00043         79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----------LGVKQ  147 (447)
T ss_pred             EecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----------cCCCc
Confidence            3444556799999999999988888888999999999999863 121       22333333322          355 5


Q ss_pred             EEEEEeCCCCCCC-c-----cccHHHHHHHHHhcC-----CCEEEeecCCCCCHH
Q psy12922        122 KVLAGNKSDVKTQ-R-----AVQTKDAQMLADNYS-----LPFYEVSCKQNINID  165 (184)
Q Consensus       122 ~ivv~nK~D~~~~-~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~  165 (184)
                      +++++||+|+... +     .....++..+....+     ++++++||++|+|+.
T Consensus       148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            7889999997621 1     111234555555555     679999999999985

>PRK00049 elongation factor Tu; Reviewed

Probab=99.77  E-value=3.2e-17  Score=126.29  Aligned_cols=161  Identities=13%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      ++....++|+++|+.++|||||+++|+....                ..+..+..+.+...  ..+......+.++||||
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtPG   84 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAH--VEYETEKRHYAHVDCPG   84 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeE--EEEcCCCeEEEEEECCC
Confidence            3456789999999999999999999986311                11112333334333  33333445689999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCCCcccc---HHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKTQRAVQ---TKD  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~  141 (184)
                      +..|.......+..+|++++|+|+..+.. ......+..+..          .++|.+ +++||+|+....+..   ..+
T Consensus        85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----------~g~p~iiVvvNK~D~~~~~~~~~~~~~~  153 (396)
T PRK00049         85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----------VGVPYIVVFLNKCDMVDDEELLELVEME  153 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----------cCCCEEEEEEeecCCcchHHHHHHHHHH
Confidence            98876666666789999999999986532 222333344433          357876 589999986422211   112


Q ss_pred             HHHHHHhc-----CCCEEEeecCCCC----------CHHHHHHHHHHHH
Q psy12922        142 AQMLADNY-----SLPFYEVSCKQNI----------NIDEAFLTLARLI  175 (184)
Q Consensus       142 ~~~~~~~~-----~~~~~~~Sa~~~~----------gv~~~~~~l~~~~  175 (184)
                      +..+....     +++++++||++|.          |+..+++.|.+.+
T Consensus       154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            33333332     4689999999875          4566666666543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.77  E-value=2.1e-17  Score=119.04  Aligned_cols=131  Identities=16%  Similarity=0.129  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC--------C-----cc---ccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY--------D-----TY---ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL   72 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   72 (184)
                      +|+++|++|||||||+++|+.....        .     ++   ....+.........+......+.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863210        0     00   011112222222333334456999999999988888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      +..+++.+|++++|+|++++... ....++..+..          .++|+++++||+|+....  .......+...++..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----------~~~P~iivvNK~D~~~a~--~~~~~~~i~~~~~~~  147 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----------LNIPTIIFVNKIDRAGAD--LEKVYQEIKEKLSSD  147 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----------cCCCEEEEEECccccCCC--HHHHHHHHHHHHCCC
Confidence            88889999999999999976432 33444444443          478999999999987532  233444455555543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.76  E-value=1.4e-17  Score=130.66  Aligned_cols=154  Identities=18%  Similarity=0.130  Sum_probs=96.4

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcCC--C-------------------------------ccccccceeEEEEE
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYY--D-------------------------------TYISTIGIDFKQKI   48 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~   48 (184)
                      ++....++|+++|++++|||||+.+|+...-.  .                               +.....+.+.....
T Consensus        22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~  101 (474)
T PRK05124         22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY  101 (474)
T ss_pred             ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence            34567799999999999999999999753211  0                               00112223333333


Q ss_pred             EEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         49 IDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        49 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      +  ......+.++||||+..|.......+..+|++++|+|+..+..-..... +..+...         ...|+++++||
T Consensus       102 ~--~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~l---------g~~~iIvvvNK  169 (474)
T PRK05124        102 F--STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLL---------GIKHLVVAVNK  169 (474)
T ss_pred             e--ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHh---------CCCceEEEEEe
Confidence            3  3334568999999998876555555689999999999986532111111 2222221         13578999999


Q ss_pred             CCCCCCccccHH----HHHHHHHhc----CCCEEEeecCCCCCHHHH
Q psy12922        129 SDVKTQRAVQTK----DAQMLADNY----SLPFYEVSCKQNINIDEA  167 (184)
Q Consensus       129 ~D~~~~~~~~~~----~~~~~~~~~----~~~~~~~Sa~~~~gv~~~  167 (184)
                      +|+....+....    ....+....    .++++++||++|.|+.+.
T Consensus       170 iD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        170 MDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             eccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            998642221111    122223332    378999999999999764

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=4.4e-17  Score=119.20  Aligned_cols=115  Identities=13%  Similarity=0.157  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC--CC---------------cccc---ccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY--YD---------------TYIS---TIGIDFKQKIIDLDDVPTKLQIWDTAGQE   67 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~--~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   67 (184)
                      -+|+++|++|||||||+++|+....  ..               ++.+   ..+..+......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4799999999999999999985211  00               0000   11222333333444455679999999998


Q ss_pred             ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      .|.......++.+|++++|+|++++... ....++....          ..++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~----------~~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR----------LRGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH----------hcCCCEEEEEECCccCC
Confidence            8877666778999999999999875322 2233333332          24789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.76  E-value=1.7e-17  Score=129.26  Aligned_cols=154  Identities=19%  Similarity=0.131  Sum_probs=100.8

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--C-----------------------------CCccccccceeEEEEEE
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--Y-----------------------------YDTYISTIGIDFKQKII   49 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~   49 (184)
                      |+.....++|+++|+.++|||||+.+|+...  .                             ..+.....+.+....  
T Consensus         1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~--   78 (446)
T PTZ00141          1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW--   78 (446)
T ss_pred             CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeE--
Confidence            6778889999999999999999999987511  1                             011122233333333  


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---H---HHHHHHHHHHHHhcccCCCCCCCCCe-E
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---F---QHLNYWLKNIEEVGCNSNQNASPDVV-K  122 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~  122 (184)
                      .+....+.+.++|+||+..|.......+..+|++++|+|++.+..   +   ......+..+..          .++| +
T Consensus        79 ~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----------~gi~~i  148 (446)
T PTZ00141         79 KFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----------LGVKQM  148 (446)
T ss_pred             EEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----------cCCCeE
Confidence            334445679999999999988777777889999999999986531   0   122333333333          3555 6


Q ss_pred             EEEEeCCCCCCC-----c-cccHHHHHHHHHhc-----CCCEEEeecCCCCCHHH
Q psy12922        123 VLAGNKSDVKTQ-----R-AVQTKDAQMLADNY-----SLPFYEVSCKQNINIDE  166 (184)
Q Consensus       123 ivv~nK~D~~~~-----~-~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~  166 (184)
                      ++++||+|....     + +.-..++..+....     .++++++|+.+|+|+.+
T Consensus       149 iv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        149 IVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            799999995321     0 11112233333332     36799999999999863

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.75  E-value=2.5e-17  Score=127.28  Aligned_cols=147  Identities=21%  Similarity=0.154  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC---------------------------------CccccccceeEEEEEEEeCCe
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY---------------------------------DTYISTIGIDFKQKIIDLDDV   54 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (184)
                      +||+++|+.++|||||+.+|+...-.                                 .+.....+.+.....+..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence            58999999999999999999743210                                 0111122233333333333  


Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      ...+.++||||+..|.......+..+|++++|+|+..+...+.... +..+..         ....++++++||+|+.+.
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~~~~~---------~~~~~iivviNK~D~~~~  148 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SYIASL---------LGIRHVVLAVNKMDLVDY  148 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HHHHHH---------cCCCcEEEEEEecccccc
Confidence            4468999999998887666667789999999999986532222222 222222         123468999999998642


Q ss_pred             cccc----HHHHHHHHHhcC---CCEEEeecCCCCCHHH
Q psy12922        135 RAVQ----TKDAQMLADNYS---LPFYEVSCKQNINIDE  166 (184)
Q Consensus       135 ~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~  166 (184)
                      ....    ......+....+   ++++++||++|+|+.+
T Consensus       149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            2111    112222333333   5799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03126 Elongation factor Tu; Provisional

Probab=99.75  E-value=8.1e-17  Score=126.05  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=97.2

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      .....++|+++|++++|||||+++|+....                ..+.....+.+.....+..  ....+.++|+||+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh  154 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH  154 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence            356679999999999999999999985211                1122223333333333333  3446899999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDA  142 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~  142 (184)
                      ..|.......+..+|++++|+|+..+.... ...++..+..          .++| +++++||+|+....+..   ..++
T Consensus       155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----------~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i  223 (478)
T PLN03126        155 ADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----------VGVPNMVVFLNKQDQVDDEELLELVELEV  223 (478)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----------cCCCeEEEEEecccccCHHHHHHHHHHHH
Confidence            988776677778999999999998653322 2333444443          3567 77899999986522211   1233


Q ss_pred             HHHHHhc-----CCCEEEeecCCCCC
Q psy12922        143 QMLADNY-----SLPFYEVSCKQNIN  163 (184)
Q Consensus       143 ~~~~~~~-----~~~~~~~Sa~~~~g  163 (184)
                      ..+....     .++++++|+.+|.+
T Consensus       224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        224 RELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHhcCCCcCcceEEEEEcccccc
Confidence            4444433     46899999998853

>PLN03127 Elongation factor Tu; Provisional

Probab=99.75  E-value=4.7e-17  Score=126.67  Aligned_cols=161  Identities=15%  Similarity=0.095  Sum_probs=102.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhC------c----------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDE------T----------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      .....++|+++|+.++|||||+++|...      .          ...+..+..+.+.....+  ......+.++||||+
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~~iDtPGh  134 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY--ETAKRHYAHVDCPGH  134 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE--cCCCeEEEEEECCCc
Confidence            4567799999999999999999999721      1          012223444555444443  334456899999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccccH---HHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQT---KDA  142 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~  142 (184)
                      ..|.......+..+|++++|+|+..+..- .....+..+..          .++| +++++||+|+....+...   .+.
T Consensus       135 ~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~----------~gip~iIvviNKiDlv~~~~~~~~i~~~i  203 (447)
T PLN03127        135 ADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----------VGVPSLVVFLNKVDVVDDEELLELVEMEL  203 (447)
T ss_pred             cchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----------cCCCeEEEEEEeeccCCHHHHHHHHHHHH
Confidence            88766555566789999999999865322 22333344443          3578 578899999864222111   122


Q ss_pred             HHHHHhc-----CCCEEEeecC---CCCC-------HHHHHHHHHHHHH
Q psy12922        143 QMLADNY-----SLPFYEVSCK---QNIN-------IDEAFLTLARLIR  176 (184)
Q Consensus       143 ~~~~~~~-----~~~~~~~Sa~---~~~g-------v~~~~~~l~~~~~  176 (184)
                      .++....     .++++++|+.   +|.|       +..+++.|.+.+.
T Consensus       204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            2333222     3678888775   5555       6777777776654

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=1.3e-17  Score=118.72  Aligned_cols=161  Identities=16%  Similarity=0.229  Sum_probs=109.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEE-eCCeeEEEEEEeCCCccc-------cccchHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID-LDDVPTKLQIWDTAGQER-------FRTLTTAY   76 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~-------~~~~~~~~   76 (184)
                      .++++|+++|.+|+|||||||+|..++......-..+.+.....+. +++  -.+.+||+||..+       +......+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            4679999999999999999999998766443322323333333322 233  3499999999543       66777888


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc-------ccHHHH-------
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA-------VQTKDA-------  142 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------~~~~~~-------  142 (184)
                      ++..|.++++.++.+++- .-..++++.+..        ..-+.|+++++|.+|...+..       .....+       
T Consensus       115 l~~~DLvL~l~~~~draL-~~d~~f~~dVi~--------~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k  185 (296)
T COG3596         115 LPKLDLVLWLIKADDRAL-GTDEDFLRDVII--------LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK  185 (296)
T ss_pred             hhhccEEEEeccCCCccc-cCCHHHHHHHHH--------hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence            999999999999998753 223444555544        234599999999999864310       001111       


Q ss_pred             ----HHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        143 ----QMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       143 ----~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                          .++++. =.|++..|...++|++.+...++..+..
T Consensus       186 ~~~~~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         186 AEALGRLFQE-VKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHHHHHhh-cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence                111111 2478888999999999999999987764

>KOG1191|consensus

Probab=99.75  E-value=1.2e-17  Score=126.98  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=115.9

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-ccc--------
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-RTL--------   72 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~--------   72 (184)
                      ..+..++|+|+|+||+|||||+|.|++.+. ...+.+.++.+.....+.++|.+  +.+.||+|..+- ...        
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHH
Confidence            345679999999999999999999999765 56778888888888888877776  999999997651 111        


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHH--HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-ccccHHHHHHHHHhc
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHL--NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-RAVQTKDAQMLADNY  149 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~  149 (184)
                      ...-+..+|++++|+|+....+-++.  ...++.... ++....+...+.|++++.||.|+... .+........... .
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~-g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~  419 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGV-GLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-E  419 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhcc-ceEEEeccccccceEEEechhhccCccccccCCceecccc-c
Confidence            13446789999999999543332222  232332221 22222233356899999999998653 2333322222222 2


Q ss_pred             C---CC-EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        150 S---LP-FYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       150 ~---~~-~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +   .+ ..++|+++++|+..+...+.+.+..
T Consensus       420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             cCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            2   22 4569999999999999988887664

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.75  E-value=8.5e-17  Score=103.76  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc---------ccchHhhhc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF---------RTLTTAYYR   78 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~   78 (184)
                      +|+|+|.+|||||||+|+|++... .....+..+.......+.+++..  +.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998533 23333444444444555566666  679999995321         111223348


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      .+|++++|+|..++.. +.....++.+.           .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----------~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK-----------NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH-----------TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh-----------cCCCEEEEEcC
Confidence            8999999999877422 23334444442           48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.74  E-value=5.2e-17  Score=121.08  Aligned_cols=164  Identities=15%  Similarity=0.120  Sum_probs=100.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe---------------------CC-eeEEEEEEeCCCc-
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL---------------------DD-VPTKLQIWDTAGQ-   66 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~D~~G~-   66 (184)
                      |+++|.||+|||||+++|++........|+++.+........                     ++ ....+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999997765444455544433322211                     12 2356999999997 


Q ss_pred             ---cccccchHh---hhcCCcEEEEEEeCCCh-------------hHHHHHHHHHHHHHH---------------hcc--
Q psy12922         67 ---ERFRTLTTA---YYRGAMGILLMYDVTNL-------------ESFQHLNYWLKNIEE---------------VGC--  110 (184)
Q Consensus        67 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~~~~~~~~~~~~~~~---------------~~~--  110 (184)
                         +++..+...   .++++|++++|+|++..             +..+++.....++..               ...  
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               344444333   47899999999999731             112222111111111               000  


Q ss_pred             ---------------------------c----CCC--------------CCCCCCeEEEEEeCCCCCCCccccHHHHHHH
Q psy12922        111 ---------------------------N----SNQ--------------NASPDVVKVLAGNKSDVKTQRAVQTKDAQML  145 (184)
Q Consensus       111 ---------------------------~----~~~--------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (184)
                                                 .    .+.              .....+|+++|+||.|+......    ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence                                       0    000              01335899999999997532221    1122


Q ss_pred             HHh-cCCCEEEeecCCCCCHHHHHH-HHHHHHHH
Q psy12922        146 ADN-YSLPFYEVSCKQNINIDEAFL-TLARLIRE  177 (184)
Q Consensus       146 ~~~-~~~~~~~~Sa~~~~gv~~~~~-~l~~~~~~  177 (184)
                      ... ....++.+||+.+.+++++.+ .+.+.+.+
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            222 245799999999999999997 58887754

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=7.5e-17  Score=114.80  Aligned_cols=159  Identities=17%  Similarity=0.256  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCc-cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-----hHhhhcCCcE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-----TTAYYRGAMG   82 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----~~~~~~~~d~   82 (184)
                      ||+++|+.||||||+.+.+.+...+.+ ..-..+.+.....+...+ ...+.+||.||+..+...     ....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999987543322 222233444444443232 335999999998755443     4667899999


Q ss_pred             EEEEEeCCChhHHHHHH---HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH------HHHHHHHHhcC---
Q psy12922         83 ILLMYDVTNLESFQHLN---YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT------KDAQMLADNYS---  150 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~---  150 (184)
                      +|+|+|+.+.+..+++.   ..+..+..        .+++..+.++++|+|+..+.....      ..+.......+   
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~--------~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~  151 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQ--------YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED  151 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHH--------HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHH--------hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            99999999544444444   44444443        478999999999999864211111      12233333444   


Q ss_pred             CCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        151 LPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +.++.+|..+. .+-+.|..+.+.+.+
T Consensus       152 ~~~~~TSI~D~-Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  152 ITFFLTSIWDE-SLYEAWSKIVQKLIP  177 (232)
T ss_dssp             EEEEEE-TTST-HHHHHHHHHHHTTST
T ss_pred             eEEEeccCcCc-HHHHHHHHHHHHHcc
Confidence            77899999994 688888888886654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.74  E-value=1.1e-16  Score=126.64  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh--CcCC---------------Cc---cccccceeEEEEEEEeCCeeEEEEEEeCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYY---------------DT---YISTIGIDFKQKIIDLDDVPTKLQIWDTA   64 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   64 (184)
                      ++..+|+|+|+++||||||.++|+.  +...               .+   .....+..+......+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4567999999999999999999974  1110               00   00111222333333334445669999999


Q ss_pred             CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      |+..|......+++.+|++++|+|++++... ....++....          ..++|+++++||+|..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----------~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----------LRDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----------hcCCCEEEEEECCccc
Confidence            9998887667778999999999999875322 2233333333          2579999999999974

>cd01850 CDC_Septin CDC/Septin

Probab=99.74  E-value=1.2e-16  Score=117.40  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=91.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCc----------cccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc---
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT---   71 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---   71 (184)
                      ...++|+++|.+|+|||||+|+|.+..+...          ..++.........+..++....+.+|||||-.....   
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3568999999999999999999998766432          233444455555566677778899999999322111   


Q ss_pred             c-----------------------hHhhhc--CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         72 L-----------------------TTAYYR--GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        72 ~-----------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                      .                       ....+.  .+|+++++++.+.. .+... ...+..+.           ..+|+++|
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----------~~v~vi~V  149 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----------KRVNIIPV  149 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----------ccCCEEEE
Confidence            0                       001222  46788888887642 12111 22233332           26899999


Q ss_pred             EeCCCCCCCcc--ccHHHHHHHHHhcCCCEEEeecC
Q psy12922        126 GNKSDVKTQRA--VQTKDAQMLADNYSLPFYEVSCK  159 (184)
Q Consensus       126 ~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
                      +||+|+....+  .......+.+...+++++.++..
T Consensus       150 inK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         150 IAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             EECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            99999855222  23344566677778888876654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.73  E-value=1.2e-16  Score=129.77  Aligned_cols=150  Identities=17%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCc---------------------------------cccccceeEEEEEEEe
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT---------------------------------YISTIGIDFKQKIIDL   51 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   51 (184)
                      .+.++|+++|++++|||||+++|+.......                                 .....+.+.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            4668999999999999999999986332100                                 0111222222233333


Q ss_pred             CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         52 DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      +  ...+.++||||+..|.......+..+|++++|+|+..+..-+. ...+..+..         ....|+++++||+|+
T Consensus       102 ~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~---------~~~~~iivvvNK~D~  169 (632)
T PRK05506        102 P--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL---------LGIRHVVLAVNKMDL  169 (632)
T ss_pred             C--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH---------hCCCeEEEEEEeccc
Confidence            3  3458899999998876555556789999999999976532211 122222322         123678999999998


Q ss_pred             CCCccccH----HHHHHHHHhcC---CCEEEeecCCCCCHHH
Q psy12922        132 KTQRAVQT----KDAQMLADNYS---LPFYEVSCKQNINIDE  166 (184)
Q Consensus       132 ~~~~~~~~----~~~~~~~~~~~---~~~~~~Sa~~~~gv~~  166 (184)
                      .+......    .+...+....+   ++++++||++|.|+.+
T Consensus       170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            64111111    12223333443   4699999999999874

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=2.2e-16  Score=115.68  Aligned_cols=112  Identities=20%  Similarity=0.149  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC------------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY------------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      +|+++|++|+|||||+++|+....                  ..+..+..+.+.....+...+  +.+.++||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            589999999999999999974111                  011222333333334444444  458999999998888


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      ..+...++.+|++++|+|+.++..-.. ...+..+..          .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----------~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----------YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----------cCCCEEEEEECCCCCC
Confidence            778888999999999999987532222 233333333          4689999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=3.1e-17  Score=120.53  Aligned_cols=141  Identities=18%  Similarity=0.182  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCc------------------cccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDT------------------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      +|+++|++|||||||+++|+.......                  .....+.......+...  .+.+.+|||||...+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence            589999999999999999875221100                  00111222222233333  3568999999998887


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS  150 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (184)
                      .....+++.+|++++|+|++++........ +..+..          .++|+++|+||+|....  ........+...++
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~----------~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~  145 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE----------AGIPRIIFINKMDRERA--DFDKTLAALQEAFG  145 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH----------cCCCEEEEEECCccCCC--CHHHHHHHHHHHhC
Confidence            777888899999999999997654432222 333333          46899999999998753  22223344444455


Q ss_pred             CCEEEe--ecCCCCCH
Q psy12922        151 LPFYEV--SCKQNINI  164 (184)
Q Consensus       151 ~~~~~~--Sa~~~~gv  164 (184)
                      .+++.+  +..+|.++
T Consensus       146 ~~~~~~~ip~~~~~~~  161 (268)
T cd04170         146 RPVVPLQLPIGEGDDF  161 (268)
T ss_pred             CCeEEEEecccCCCce
Confidence            544433  34444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=4.6e-16  Score=119.84  Aligned_cols=155  Identities=18%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..=|.++|+..-|||||+..+-.........-..+.-.....+..+. ..-.+.++||||++.|..++..-.+-+|.+++
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            35589999999999999999998887655555555556666665541 12248999999999999999888888999999


Q ss_pred             EEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-------hc--CCCE
Q psy12922         86 MYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-------NY--SLPF  153 (184)
Q Consensus        86 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~  153 (184)
                      |+++++.   .+.+.+.    .          ....++|+++++||+|.++...   +....-..       .+  ...+
T Consensus        85 VVa~dDGv~pQTiEAI~----h----------ak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~  147 (509)
T COG0532          85 VVAADDGVMPQTIEAIN----H----------AKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIF  147 (509)
T ss_pred             EEEccCCcchhHHHHHH----H----------HHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEE
Confidence            9999974   2332222    2          3357999999999999984221   11111111       12  1568


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +++||++|+|++++++.+.-....+
T Consensus       148 VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         148 VPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             EEeeccCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998876655433

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.72  E-value=5.5e-16  Score=108.93  Aligned_cols=161  Identities=11%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCcc--ccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------c---hH
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------L---TT   74 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~---~~   74 (184)
                      ++|+++|.+|||||||+|++++.......  .+..+...........+.  .+.++||||......        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            48999999999999999999986543222  223344444444444444  599999999543321        1   11


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc------cHHHHHHHHHh
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV------QTKDAQMLADN  148 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~  148 (184)
                      ...+..|++++|+++.+ .+.+ ....++.+....     ....-.++++|+|+.|.......      .....+.+...
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~f-----g~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELF-----GEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHh-----ChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence            22457899999999886 2222 222333333310     11123688999999997543211      11344555566


Q ss_pred             cCCCEEEee-----cCCCCCHHHHHHHHHHHHHH
Q psy12922        149 YSLPFYEVS-----CKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       149 ~~~~~~~~S-----a~~~~gv~~~~~~l~~~~~~  177 (184)
                      .+-.++.++     +..+.+++++++.+.+.+.+
T Consensus       152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            565555554     45677888988888888775

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.71  E-value=1.9e-16  Score=123.19  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEE---------------EeCC-------------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKII---------------DLDD-------------   53 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-------------   53 (184)
                      .-.++|+++|+...|||||+.+|++...   ..+.....+.+......               ..+.             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999997443   22222222221111100               0000             


Q ss_pred             ---eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         54 ---VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        54 ---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                         ....+.++|+||++.|.......+..+|++++|+|+..+.........+..+..         ....|+++|+||+|
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~---------lgi~~iIVvlNKiD  182 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI---------MKLKHIIILQNKID  182 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH---------cCCCcEEEEEeccc
Confidence               013589999999998877766777899999999999864211122233333332         12357899999999


Q ss_pred             CCCCcccc--HHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        131 VKTQRAVQ--TKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       131 ~~~~~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +.+.....  ..+...+...   .+.+++++||++|.|++.+++.|.+.+..
T Consensus       183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            87422211  1222222222   35789999999999999999999875543

>KOG0462|consensus

Probab=99.71  E-value=2e-16  Score=121.67  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=121.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC---------------CCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY---------------YDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQER   68 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~   68 (184)
                      +.--++.|+-+..-|||||..+|+...-               ..+..+.+++.-+...+.+ +++.+.++++||||+..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3345789999999999999999986432               1122333333333333322 36778999999999999


Q ss_pred             cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHHHHH
Q psy12922         69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQMLAD  147 (184)
Q Consensus        69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~  147 (184)
                      |..--...+..++++++|+|++.+-.-+....++..+.           .+.-+|.|+||.|++..+.... .+..+...
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~  206 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----------AGLAIIPVLNKIDLPSADPERVENQLFELFD  206 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhc
Confidence            98888888899999999999998766666666666665           4788999999999986443322 23444555


Q ss_pred             hcCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        148 NYSLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       148 ~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ....+.+.+|||+|.|+.++++++++.+...+
T Consensus       207 ~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  207 IPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             CCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            55667899999999999999999999887644

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=3.4e-16  Score=128.43  Aligned_cols=117  Identities=21%  Similarity=0.220  Sum_probs=81.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCC-------------Ccc-----ccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY-------------DTY-----ISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+...+|+|+|+.++|||||+++|......             .+.     ....+.......+...  ...+.+|||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG   82 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPG   82 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCC
Confidence            345679999999999999999999853210             000     1112222222233333  45699999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +..|...+..+++.+|++++|+|++++........| ..+..          .++|+++|+||+|+..
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----------~~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----------YGIPRLIFINKMDRVG  139 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----------cCCCEEEEEECCCCCC
Confidence            998888888899999999999999987655444333 33333          4789999999999853

>TIGR00503 prfC peptide chain release factor 3

Probab=99.70  E-value=1e-15  Score=121.35  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=79.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh--CcCCC------------------ccccccceeEEEEEEEeCCeeEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD--ETYYD------------------TYISTIGIDFKQKIIDLDDVPTKLQIWDT   63 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~   63 (184)
                      .....+|+|+|++++|||||+++|+.  +....                  ......+..+......++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            35567999999999999999999864  11100                  00111223333344444555667999999


Q ss_pred             CCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      ||+..|.......++.+|++++|+|+++... .....++.....          .++|+++++||+|+
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~----------~~~PiivviNKiD~  144 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL----------RDTPIFTFMNKLDR  144 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh----------cCCCEEEEEECccc
Confidence            9998887766667899999999999986421 122333433322          46899999999997

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1707|consensus

Probab=99.70  E-value=1.1e-16  Score=123.77  Aligned_cols=164  Identities=21%  Similarity=0.291  Sum_probs=113.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      -+.+||+++|..|+|||||+-.|...++...-.+-...-.-...+..+..+  ..++|++-..+-......-++++|++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vp--t~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVP--TSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCc--eEEEecccccchhHHHHHHHhhcCEEE
Confidence            467999999999999999999999988754433322111111222233444  788999866555555566679999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHHhcC-C-CEEEeecCC
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYS-L-PFYEVSCKQ  160 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~  160 (184)
                      +||+.+++.+++.+. .|+..+++..     ....++|+|+|+||+|........... ...+...+. + .-++|||++
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~-----~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~  159 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLF-----GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT  159 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhccc-----CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence            999999999999985 6777777631     224689999999999986543332222 222222221 1 248899999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLI  175 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~  175 (184)
                      -.++.++|.-..+++
T Consensus       160 ~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  160 LANVSELFYYAQKAV  174 (625)
T ss_pred             hhhhHhhhhhhhhee
Confidence            999999887665544

>KOG0077|consensus

Probab=99.69  E-value=1.2e-16  Score=105.13  Aligned_cols=158  Identities=20%  Similarity=0.296  Sum_probs=115.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++.-|++++|-.|+|||||++.|.++... .+.||..  ..+..+.+.+.  +++-.|.+|+.+-+..|..++..+|+++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~m--~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGGM--TFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecCc--eEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            45678999999999999999999887653 2334332  11223334554  4899999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH---HHHhc-----------C
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM---LADNY-----------S  150 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~-----------~  150 (184)
                      +.+|+.+.+.+.+.+..++.+...      ..-..+|+++.+||.|.+..-  ..++...   +....           +
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~------e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~  164 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSD------ESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSN  164 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhH------HHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCC
Confidence            999999999998888777766653      335789999999999987633  3333221   11111           1


Q ss_pred             C---CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        151 L---PFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       151 ~---~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +   .++.||...+.|-.+.|.|+.+.+
T Consensus       165 ~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             CCeEEEEEEEEEccCccceeeeehhhhc
Confidence            1   256788888888888888877653

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.69  E-value=4.1e-16  Score=106.63  Aligned_cols=120  Identities=22%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHh---hhcCCcEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTA---YYRGAMGI   83 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~~~~d~~   83 (184)
                      .-.|+++|++|||||+|+..|..+......... ..... ..+ .......+.++|+||+.+.+.....   +...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~-~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA-YNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE-CCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce-EEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            457999999999999999999998553332222 11111 111 1223335899999999887764433   47889999


Q ss_pred             EEEEeCCC-hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         84 LLMYDVTN-LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        84 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      |||+|.+. +..+.+...++-.+.....    .....+|++|++||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~----~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTE----VQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHH----CCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhh----hccCCCCEEEEEeCccccc
Confidence            99999974 3445555443333333211    3467899999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.69  E-value=1.2e-15  Score=117.02  Aligned_cols=83  Identities=20%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe---------------------C-CeeEEEEEEeCCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL---------------------D-DVPTKLQIWDTAG   65 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~G   65 (184)
                      ++|+++|.||||||||+++|++........++++.+........                     + .....++++|+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999997765444455554444433221                     1 1235689999999


Q ss_pred             cc----ccccchHhh---hcCCcEEEEEEeCC
Q psy12922         66 QE----RFRTLTTAY---YRGAMGILLMYDVT   90 (184)
Q Consensus        66 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   90 (184)
                      ..    ....+-..+   ++.+|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    333333344   78999999999997

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=4.7e-15  Score=112.69  Aligned_cols=161  Identities=19%  Similarity=0.178  Sum_probs=119.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC---------------CccccccceeEEEEEEEe---CCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY---------------DTYISTIGIDFKQKIIDL---DDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~   66 (184)
                      +.--+..++-+-.-|||||..++....-.               -+..+..++.-....+.+   ++..|.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            33457789999999999999999863321               122333444334433333   457799999999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA  146 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  146 (184)
                      -.|.---+..+..+.+.++++|++.+-.-+.+...|..+..           +.-++-|+||.|++..  ....-..++.
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----------~LeIiPViNKIDLP~A--dpervk~eIe  153 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----------NLEIIPVLNKIDLPAA--DPERVKQEIE  153 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----------CcEEEEeeecccCCCC--CHHHHHHHHH
Confidence            88776556667889999999999988767777788877765           6778999999999863  3333345556


Q ss_pred             HhcCCC---EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        147 DNYSLP---FYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       147 ~~~~~~---~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ...|++   .+.+|||+|.|+++++++|.+.++..
T Consensus       154 ~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         154 DIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             HHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence            666653   78899999999999999999988754

>KOG1490|consensus

Probab=99.66  E-value=4.7e-16  Score=118.61  Aligned_cols=161  Identities=19%  Similarity=0.185  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----ccccc-----hHhhhc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----RFRTL-----TTAYYR   78 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~-----~~~~~~   78 (184)
                      -.+++||.||+|||||+|.++.......+.++++.......+.+...  .++++||||.-    +-.+.     +.....
T Consensus       169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl--rwQViDTPGILD~plEdrN~IEmqsITALAH  246 (620)
T KOG1490|consen  169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL--RWQVIDTPGILDRPEEDRNIIEMQIITALAH  246 (620)
T ss_pred             CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee--eeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence            56899999999999999999999888888888887777776544444  48999999932    11111     122223


Q ss_pred             CCcEEEEEEeCCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH---HHHHHHhcCCCE
Q psy12922         79 GAMGILLMYDVTNL--ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD---AQMLADNYSLPF  153 (184)
Q Consensus        79 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~  153 (184)
                      --.++++++|++..  .+.++-..++..+.-        ...+.|+|+|+||+|+.....++...   +..+...-++++
T Consensus       247 LraaVLYfmDLSe~CGySva~QvkLfhsIKp--------LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v  318 (620)
T KOG1490|consen  247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--------LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV  318 (620)
T ss_pred             hhhhheeeeechhhhCCCHHHHHHHHHHhHH--------HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence            34678889999853  456666677777764        35789999999999998766655543   233334445899


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +++|+.+.+|+-++.....+.+...
T Consensus       319 ~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  319 VQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             EEecccchhceeeHHHHHHHHHHHH
Confidence            9999999999998888777766653

>PRK09866 hypothetical protein; Provisional

Probab=99.65  E-value=1.1e-14  Score=115.24  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             EEEEEeCCCcccc-----ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         57 KLQIWDTAGQERF-----RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        57 ~~~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      .+.++||||....     .......+..+|+++||+|...+.+..+ ....+.+..        .....|+++|+||+|+
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk--------~~K~~PVILVVNKIDl  301 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA--------VGQSVPLYVLVNKFDQ  301 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh--------cCCCCCEEEEEEcccC
Confidence            4688899996432     2233456889999999999987433322 223344433        1224699999999998


Q ss_pred             CCCccccHHHHHHHHH----hc---CCCEEEeecCCCCCHHHHHHHHHH
Q psy12922        132 KTQRAVQTKDAQMLAD----NY---SLPFYEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       132 ~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      .+...........+..    ..   ...+|++||+.|.|++.+++.|.+
T Consensus       302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            6433322333333321    11   235899999999999999998877

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=7.9e-15  Score=120.31  Aligned_cols=117  Identities=19%  Similarity=0.124  Sum_probs=82.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC------------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY------------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .++..+|+|+|++++|||||+++|+....                  ..+..+..+.+.....+.+++  ..+.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            34567899999999999999999975211                  011233444444444454544  4589999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +..+...+...++.+|++++|+|+..+...... ..+..+..          .++|+++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----------~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----------YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECCCCCC
Confidence            988777778888999999999999876432222 33333333          4689999999999853

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.65  E-value=1.4e-15  Score=95.68  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----ccccccchHhhhcCCcEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----QERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i   84 (184)
                      |++++|..|+|||||.+.|.+...  .+..++.+++..       .    -.+||||    +.++..-.....+.+|.++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999988654  333333333221       1    1569999    3444444455568899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNIN  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  163 (184)
                      +|-.++++.+.-....              ......|+|=|+||.|+++  ..+.....++...-|+ ++|.+|+.++.|
T Consensus        70 ~v~~and~~s~f~p~f--------------~~~~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~g  133 (148)
T COG4917          70 YVHAANDPESRFPPGF--------------LDIGVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQG  133 (148)
T ss_pred             eeecccCccccCCccc--------------ccccccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCccc
Confidence            9999998865321111              2234566999999999985  3444556777778887 799999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        164 IDEAFLTLAR  173 (184)
Q Consensus       164 v~~~~~~l~~  173 (184)
                      ++++++.|..
T Consensus       134 v~~l~~~L~~  143 (148)
T COG4917         134 VEELVDYLAS  143 (148)
T ss_pred             HHHHHHHHHh
Confidence            9999987754

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.7e-15  Score=110.68  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=100.2

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--C-----------------------------CCccccccceeEEEEEE
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--Y-----------------------------YDTYISTIGIDFKQKII   49 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~   49 (184)
                      |......++++++|+..+|||||+-+|+...  +                             ..+.....+.+.  ...
T Consensus         1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~--~~~   78 (428)
T COG5256           1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV--AHS   78 (428)
T ss_pred             CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE--EEE
Confidence            5667788999999999999999999887421  1                             111222233333  333


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHH------HHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF------QHLNYWLKNIEEVGCNSNQNASPDVVKV  123 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~i  123 (184)
                      ..+...+++.|+|+||++.|-.....-+.++|+.|+|+|+.+++.-      ...+........         ..-..++
T Consensus        79 ~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---------lGi~~lI  149 (428)
T COG5256          79 KFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---------LGIKQLI  149 (428)
T ss_pred             EeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---------cCCceEE
Confidence            3445556799999999988877666667899999999999876321      111222222222         2356689


Q ss_pred             EEEeCCCCCCCccccHH----HHHHHHHhcC-----CCEEEeecCCCCCHHH
Q psy12922        124 LAGNKSDVKTQRAVQTK----DAQMLADNYS-----LPFYEVSCKQNINIDE  166 (184)
Q Consensus       124 vv~nK~D~~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~  166 (184)
                      |++||+|...-.+.-..    ....+.+..+     ++|+++|+..|.|+.+
T Consensus       150 VavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         150 VAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             EEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            99999998762111111    1222333333     6699999999999853

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=1.1e-14  Score=119.47  Aligned_cols=116  Identities=19%  Similarity=0.102  Sum_probs=82.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC------------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY------------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      +.--+|+|+|++++|||||+++|+.....                  .+..+.++.+.....+.+.+  +.+.+|||||+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~   85 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH   85 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence            44569999999999999999999742110                  01122344444444444544  45999999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      ..+.......++.+|++++|+|+.++...... ..+..+..          .++|+++|+||+|+..
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----------~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR----------YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH----------cCCCEEEEEECCCCCC
Confidence            88877778888999999999999876443332 33333333          4689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1145|consensus

Probab=99.63  E-value=1.9e-14  Score=110.97  Aligned_cols=152  Identities=16%  Similarity=0.154  Sum_probs=108.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ..-|-|+|+..-|||||+..|-.........-.++.-.....+..+ ..-.+++.||||+.-|..++..-..-+|.+++|
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            4567899999999999999998877644444444444444444444 224589999999999999998888899999999


Q ss_pred             EeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH------HhcC--CCEEE
Q psy12922         87 YDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA------DNYS--LPFYE  155 (184)
Q Consensus        87 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~  155 (184)
                      +.++++   .+.+.++.              ....++|+++.+||+|.+..  ......+++.      ..+|  .+.++
T Consensus       232 VAadDGVmpQT~EaIkh--------------Ak~A~VpiVvAinKiDkp~a--~pekv~~eL~~~gi~~E~~GGdVQvip  295 (683)
T KOG1145|consen  232 VAADDGVMPQTLEAIKH--------------AKSANVPIVVAINKIDKPGA--NPEKVKRELLSQGIVVEDLGGDVQVIP  295 (683)
T ss_pred             EEccCCccHhHHHHHHH--------------HHhcCCCEEEEEeccCCCCC--CHHHHHHHHHHcCccHHHcCCceeEEE
Confidence            999874   23333222              34579999999999998742  2222222222      1222  57899


Q ss_pred             eecCCCCCHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +||++|+|++.+-+.+.-..
T Consensus       296 iSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  296 ISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             eecccCCChHHHHHHHHHHH
Confidence            99999999999888865543

>PTZ00258 GTP-binding protein; Provisional

Probab=99.63  E-value=1.4e-14  Score=110.21  Aligned_cols=87  Identities=23%  Similarity=0.281  Sum_probs=64.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQER   68 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~   68 (184)
                      ....++|+++|.||||||||+|+|++........|+++.+.....+.+++.               +..+.++|+||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            345689999999999999999999987776666688777766666655432               23589999999542


Q ss_pred             cc----cc---hHhhhcCCcEEEEEEeCC
Q psy12922         69 FR----TL---TTAYYRGAMGILLMYDVT   90 (184)
Q Consensus        69 ~~----~~---~~~~~~~~d~~i~v~d~~   90 (184)
                      ..    .+   ....++++|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            11    11   123457899999999984

>KOG3905|consensus

Probab=99.62  E-value=1.9e-14  Score=104.77  Aligned_cols=167  Identities=17%  Similarity=0.209  Sum_probs=120.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE--EeCCeeEEEEEEeCCCccccccchHhhhcCC----
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--DLDDVPTKLQIWDTAGQERFRTLTTAYYRGA----   80 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----   80 (184)
                      .-+|+++|..++|||||+.+|.+.+   +..+..+.+|..-.+  ...+...++.+|-.-|.--...+....+...    
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            3579999999999999999999876   344444545544433  2334445678888888766666665555432    


Q ss_pred             cEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCC---------------------------------------------
Q psy12922         81 MGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQ---------------------------------------------  114 (184)
Q Consensus        81 d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  114 (184)
                      -.+|+++|+++|. -++.++.|..-+..+...+.-                                             
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            4688999999995 467788998877766322111                                             


Q ss_pred             ---------CCCCCCeEEEEEeCCCCCC----C-------ccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        115 ---------NASPDVVKVLAGNKSDVKT----Q-------RAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       115 ---------~~~~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                               ..+..+|++||+||||...    .       .......+++||..+|+..|.+|++...|++-+...|.+.
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                     2245799999999999822    1       1122234788999999999999999999999999888876


Q ss_pred             HH
Q psy12922        175 IR  176 (184)
Q Consensus       175 ~~  176 (184)
                      ..
T Consensus       289 ~y  290 (473)
T KOG3905|consen  289 SY  290 (473)
T ss_pred             hc
Confidence            64

>PRK12740 elongation factor G; Reviewed

Probab=99.59  E-value=2e-14  Score=117.81  Aligned_cols=107  Identities=20%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             EcCCCCchHHHHHHHhhCcCC------------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH
Q psy12922         13 LGDSNVGKTCIVHRFCDETYY------------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT   74 (184)
Q Consensus        13 ~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   74 (184)
                      +|++++|||||+++|....-.                  .+..+..+.......+...+  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999642210                  01122333333334444444  5699999999988777777


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      .++..+|++++|+|++.......... +..+..          .++|+++|+||+|..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~-~~~~~~----------~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETV-WRQAEK----------YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHH-HHHHHH----------cCCCEEEEEECCCCC
Confidence            78899999999999987654433332 333332          468999999999985

>KOG0090|consensus

Probab=99.59  E-value=1.7e-14  Score=99.13  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc---CCcEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR---GAMGI   83 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~~   83 (184)
                      .-.|+++|+.+||||+|+-.|..+.+.....+.   +.....+.+.+..  .+++|.||+.+.+.-...++.   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            357999999999999999999987543222111   1222222233332  799999999988776666666   78999


Q ss_pred             EEEEeCCC-hhHHHHHHH-HHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--cccHH----HH-------------
Q psy12922         84 LLMYDVTN-LESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--AVQTK----DA-------------  142 (184)
Q Consensus        84 i~v~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~----~~-------------  142 (184)
                      +||+|... +....+... ++.-+...     ......+|++++.||.|+....  +.-..    ++             
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~-----~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~  187 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDS-----RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSI  187 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhh-----ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999873 222344433 34433331     0146789999999999983211  10000    00             


Q ss_pred             -----------------HHHHHh--cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        143 -----------------QMLADN--YSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       143 -----------------~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                                       .+|.+.  ..+.|.++|++++ +++++-+||.+.
T Consensus       188 ~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  188 SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                             111111  2345788999999 799999999865

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.58  E-value=1.7e-14  Score=118.74  Aligned_cols=121  Identities=18%  Similarity=0.122  Sum_probs=82.2

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhC---------------cCCC-cccc--ccceeEEEEEEEeCCeeEEEEEEe
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE---------------TYYD-TYIS--TIGIDFKQKIIDLDDVPTKLQIWD   62 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~---------------~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D   62 (184)
                      |.+.+...+|+++|+.++|||||+++|...               .+.. +..+  +.........+..++..+.+.++|
T Consensus        13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD   92 (720)
T TIGR00490        13 MWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID   92 (720)
T ss_pred             hhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence            455566789999999999999999999752               1111 0111  222222222333566678899999


Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      |||+..|.......++.+|++++|+|+..+-..+.... +.....          .+.|+++++||+|..
T Consensus        93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~~----------~~~p~ivviNKiD~~  151 (720)
T TIGR00490        93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQALK----------ENVKPVLFINKVDRL  151 (720)
T ss_pred             CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHHH----------cCCCEEEEEEChhcc
Confidence            99999888777788899999999999986532222222 222222          356888999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.57  E-value=1.8e-13  Score=96.14  Aligned_cols=101  Identities=15%  Similarity=0.079  Sum_probs=63.2

Q ss_pred             EEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922         57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA  136 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (184)
                      ...++++.|..-..... ..  -+|.++.|+|+.+.+....  ....++..             .=++++||+|+.+...
T Consensus        93 D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi~~-------------ad~~~~~k~d~~~~~~  154 (199)
T TIGR00101        93 EMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGITR-------------SDLLVINKIDLAPMVG  154 (199)
T ss_pred             CEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHhhh-------------ccEEEEEhhhcccccc
Confidence            46678888843222222 11  2588999999987665321  11112211             1289999999975322


Q ss_pred             ccHHHHHHHHH--hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        137 VQTKDAQMLAD--NYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       137 ~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      .......+..+  ..+++++++||++|+|+++++++|.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            22222233333  3468999999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK00007 elongation factor G; Reviewed

Probab=99.57  E-value=6.7e-14  Score=114.87  Aligned_cols=142  Identities=15%  Similarity=0.123  Sum_probs=91.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh--CcCC----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYY----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ++-.+|+|+|++++|||||+++|+.  +...                .+..+..+.+.....+...+  ..+.++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            4456999999999999999999974  2110                01233344444444444444  46999999998


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA  146 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  146 (184)
                      ..|.......++.+|++++|+|+..+-..+... .+..+..          .+.|+++++||+|+....  .......+.
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~----------~~~p~iv~vNK~D~~~~~--~~~~~~~i~  152 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK----------YKVPRIAFVNKMDRTGAD--FYRVVEQIK  152 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH----------cCCCEEEEEECCCCCCCC--HHHHHHHHH
Confidence            877665667778999999999998664333322 3333433          468899999999987532  222233333


Q ss_pred             HhcCC----CEEEeecCCC
Q psy12922        147 DNYSL----PFYEVSCKQN  161 (184)
Q Consensus       147 ~~~~~----~~~~~Sa~~~  161 (184)
                      ..++.    ..+++|+..+
T Consensus       153 ~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        153 DRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHhCCCeeeEEecCccCCc
Confidence            33332    3456666555

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.56  E-value=1.7e-13  Score=102.59  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=68.5

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      .+.+.++||+|..+...   .....+|.++++.+...++.+...+.-..++               .-++|+||+|+...
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------------aDIiVVNKaDl~~~  209 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------------ADLIVINKADGDNK  209 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhhhhhh---------------hheEEeehhcccch
Confidence            35689999999763332   2456799999998866666665544321111               12899999998753


Q ss_pred             ccc--cHHHHHHHHHh-------cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        135 RAV--QTKDAQMLADN-------YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       135 ~~~--~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ...  ...+.......       +..+++.+||+++.|+++++++|.+.+.
T Consensus       210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            211  11122222221       2368999999999999999999988654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.55  E-value=1.3e-13  Score=115.69  Aligned_cols=144  Identities=19%  Similarity=0.213  Sum_probs=95.4

Q ss_pred             chHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe----------------eEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922         19 GKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV----------------PTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus        19 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +||||+.++.+...........|.......+..+..                .-.+.+|||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            499999999998876555555544444433333310                0137999999999998877777888999


Q ss_pred             EEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH------------HH-HHHH-
Q psy12922         83 ILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT------------KD-AQML-  145 (184)
Q Consensus        83 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------------~~-~~~~-  145 (184)
                      +++|+|++++   .+.+.+    ..+..          .++|+++|+||+|+...+....            .. ..++ 
T Consensus       553 vlLVVDa~~Gi~~qT~e~I----~~lk~----------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~  618 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI----NILRQ----------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE  618 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH----HHHHH----------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence            9999999863   333322    22322          3679999999999864322100            00 0110 


Q ss_pred             ----------HH------------hc--CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        146 ----------AD------------NY--SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       146 ----------~~------------~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                                +.            .+  .++++++||++|+|+++++++|.....
T Consensus       619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                      10            11  357999999999999999988865443

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.55  E-value=1.2e-13  Score=98.07  Aligned_cols=159  Identities=13%  Similarity=0.183  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCcc--ccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------h----H
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------T----T   74 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~----~   74 (184)
                      ++|+++|.+||||||++|.+++.......  ....+..+........+..  +.++||||.......       +    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999997653322  2223334444444566755  899999994321111       1    1


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHH--HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-------HHHHHHH
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQH--LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-------TKDAQML  145 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~  145 (184)
                      ...+..+++++|+.+... +..+  .-.++..+..        ...-..++||+|..|........       ...+..+
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG--------~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~l  149 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFG--------EEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQEL  149 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHC--------GGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHcc--------HHHHhHhhHHhhhccccccccHHHHHhccCchhHhHH
Confidence            223568999999999832 2222  2223333322        11234588999998875543311       1224556


Q ss_pred             HHhcCCCEEEeecC------CCCCHHHHHHHHHHHHHH
Q psy12922        146 ADNYSLPFYEVSCK------QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       146 ~~~~~~~~~~~Sa~------~~~gv~~~~~~l~~~~~~  177 (184)
                      ..+.+-.++.++.+      ....+.++++.+.+.+.+
T Consensus       150 i~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  150 IEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             HHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            66777778877776      334567777777666654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.55  E-value=1.6e-13  Score=99.32  Aligned_cols=124  Identities=17%  Similarity=0.139  Sum_probs=73.3

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc--c-c------
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR--T-L------   72 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~-~------   72 (184)
                      ..+.+++|+++|.+|+|||||+|+|++.... .......+...........+  ..+.++||||.....  . .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            3466799999999999999999999996642 22222233333333333344  458999999965331  0 1      


Q ss_pred             -hHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         73 -TTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        73 -~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                       ...++.  ..+++++|..++....-......++.+....     ....-.++++|.||+|...
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~f-----G~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSF-----GPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHh-----ChhhHhCEEEEEeCCccCC
Confidence             122333  5688888876664321111123333343310     1112357999999999854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1532|consensus

Probab=99.54  E-value=2.3e-14  Score=102.15  Aligned_cols=116  Identities=18%  Similarity=0.129  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCcccc------ccchHhhhcCC--cEEEEEEeCC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         56 TKLQIWDTAGQERF------RTLTTAYYRGA--MGILLMYDVT---NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        56 ~~~~l~D~~G~~~~------~~~~~~~~~~~--d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      +.+.++||||+-+-      ...+...+..+  -++++|+|..   +|.+|..-.-+.-.+         .+..+.|+++
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi---------lyktklp~iv  186 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI---------LYKTKLPFIV  186 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH---------HHhccCCeEE
Confidence            45789999996431      12222233332  3455666653   344443222222222         4568999999


Q ss_pred             EEeCCCCCCCccc----cHHHHHHHHH----------------------hcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        125 AGNKSDVKTQRAV----QTKDAQMLAD----------------------NYSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       125 v~nK~D~~~~~~~----~~~~~~~~~~----------------------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      |+||+|+.+....    .+.+..+-+.                      ..++..+-+|+.+|.|++++|..+.+.+.++
T Consensus       187 vfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  187 VFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             EEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            9999999652110    0000000000                      1145678899999999999999999888775


Q ss_pred             Hh
Q psy12922        179 TR  180 (184)
Q Consensus       179 ~~  180 (184)
                      ..
T Consensus       267 ~~  268 (366)
T KOG1532|consen  267 EE  268 (366)
T ss_pred             HH
Confidence            43

>KOG1486|consensus

Probab=99.54  E-value=7.6e-13  Score=93.46  Aligned_cols=159  Identities=18%  Similarity=0.206  Sum_probs=112.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cchHhhhc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TLTTAYYR   78 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~   78 (184)
                      -..||+++|.|.+|||||+..++.-........+++..+-...+.+++..  +++.|.||.-+..       .-..+..+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEee
Confidence            34799999999999999999999866555666677777888888788776  8999999943211       11234568


Q ss_pred             CCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCC-------------------------------------------
Q psy12922         79 GAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQ-------------------------------------------  114 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------------------------------------  114 (184)
                      .+|.+++|.|++..+.-.. +...++.+-   ...+.                                           
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vG---iRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Na  215 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVG---IRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNA  215 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhc---eeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccc
Confidence            8999999999996544332 233333332   22111                                           


Q ss_pred             ------------------CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        115 ------------------NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       115 ------------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                                        .+...++|+.|-||.|     +++..+..++++..+  .+-+|+....|++.+++.|++.+.
T Consensus       216 evl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  216 EVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             eEEEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence                              1233477788888888     455566666776655  366899999999999999999875

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.53  E-value=2.4e-13  Score=92.64  Aligned_cols=150  Identities=18%  Similarity=0.131  Sum_probs=88.7

Q ss_pred             CCCce-eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEE---------------EEEeC-Ce-----------
Q psy12922          3 DCNQT-YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQK---------------IIDLD-DV-----------   54 (184)
Q Consensus         3 ~~~~~-~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~-----------   54 (184)
                      ..+.+ ++|.|.|++|||||+|+.++...-.........+.+.++.               .+... ++           
T Consensus         8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai   87 (202)
T COG0378           8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAI   87 (202)
T ss_pred             HhcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHH
Confidence            44555 8999999999999999988765321111111111111110               00000 00           


Q ss_pred             --------eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-----
Q psy12922         55 --------PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-----  121 (184)
Q Consensus        55 --------~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----  121 (184)
                              ...+.+++.+|  +....-+ +.-..+.-++|+|++.++..                    -.+.-|     
T Consensus        88 ~~l~~~~~~~Dll~iEs~G--NL~~~~s-p~L~d~~~v~VidvteGe~~--------------------P~K~gP~i~~a  144 (202)
T COG0378          88 EELVLDFPDLDLLFIESVG--NLVCPFS-PDLGDHLRVVVIDVTEGEDI--------------------PRKGGPGIFKA  144 (202)
T ss_pred             HHHhhcCCcCCEEEEecCc--ceecccC-cchhhceEEEEEECCCCCCC--------------------cccCCCceeEe
Confidence                    12466667776  2221111 11122477889999876421                    001122     


Q ss_pred             EEEEEeCCCCCCCccccHHHHHHHHHhc--CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        122 KVLAGNKSDVKTQRAVQTKDAQMLADNY--SLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      =++|+||.|+......+.....+-+++.  +++++++|+++|+|++++++|+....
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            2899999999876666555555555444  58999999999999999999987653

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.53  E-value=5.7e-13  Score=103.82  Aligned_cols=169  Identities=17%  Similarity=0.249  Sum_probs=118.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC--CeeEEEEEEeCCCccccccchHhhhcC----
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWDTAGQERFRTLTTAYYRG----   79 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~----   79 (184)
                      ..-.|+|+|..++|||||+.+|.+.+   ++.++.+.+|....+.-+  ....++.+|...|...+..+....+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34689999999999999999987643   345566666666554333  223468999998877777766655543    


Q ss_pred             CcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCC--------------------------------------------
Q psy12922         80 AMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQ--------------------------------------------  114 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------------------------------------  114 (184)
                      --.+|+|+|.+.|.. ++.+..|+..+..+......                                            
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            256889999999876 45667776655544211000                                            


Q ss_pred             -----------CCCCCCeEEEEEeCCCCCC----Cc-------cccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHH
Q psy12922        115 -----------NASPDVVKVLAGNKSDVKT----QR-------AVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA  172 (184)
Q Consensus       115 -----------~~~~~~p~ivv~nK~D~~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  172 (184)
                                 ..+-++|++||++|+|...    ..       ..-...++.+|..+|+.++-+|++...+++.+...|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                       1122589999999999742    11       1122346889999999999999999999999998887


Q ss_pred             HHHHH
Q psy12922        173 RLIRE  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      ..+..
T Consensus       261 h~l~~  265 (472)
T PF05783_consen  261 HRLYG  265 (472)
T ss_pred             HHhcc
Confidence            77654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.53  E-value=3.5e-13  Score=101.59  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccccc--
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERFR--   70 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~--   70 (184)
                      ++|+++|.||||||||+|+|++........|+++.+.....+.+++.               +..+.++|+||.....  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999998765566677776666555544431               2358999999954211  


Q ss_pred             --cc---hHhhhcCCcEEEEEEeCC
Q psy12922         71 --TL---TTAYYRGAMGILLMYDVT   90 (184)
Q Consensus        71 --~~---~~~~~~~~d~~i~v~d~~   90 (184)
                        .+   ....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              11   123357899999999984

>KOG0461|consensus

Probab=99.52  E-value=4.2e-13  Score=98.66  Aligned_cols=169  Identities=20%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCc----CCC---ccccccceeEEEEEEE-------eCCeeEEEEEEeCCCc
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET----YYD---TYISTIGIDFKQKIID-------LDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~----~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~l~D~~G~   66 (184)
                      |+..-..+++.++|+..||||||.++|+.-.    |..   ...+..+.+.....+.       ..+....+.++|.||+
T Consensus         1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH   80 (522)
T KOG0461|consen    1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH   80 (522)
T ss_pred             CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence            4555566999999999999999999998622    211   1122222233222222       2345577899999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHH-HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC--ccccH-HHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYW-LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ--RAVQT-KDA  142 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~-~~~  142 (184)
                      ...-.....-.+-.|.+++|+|+..+..-+..+-+ +-++.            -...++|+||.|...+  +.-.. ...
T Consensus        81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------------c~klvvvinkid~lpE~qr~ski~k~~  148 (522)
T KOG0461|consen   81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------------CKKLVVVINKIDVLPENQRASKIEKSA  148 (522)
T ss_pred             HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------------ccceEEEEeccccccchhhhhHHHHHH
Confidence            77665555556778999999999865333222221 12221            2345788888887442  22111 122


Q ss_pred             HHHHHhc-------CCCEEEeecCCC----CCHHHHHHHHHHHHHHHHhh
Q psy12922        143 QMLADNY-------SLPFYEVSCKQN----INIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       143 ~~~~~~~-------~~~~~~~Sa~~~----~gv~~~~~~l~~~~~~~~~~  181 (184)
                      .+..+.+       +.|++++||++|    +++.++.+.|.+++.+.++.
T Consensus       149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd  198 (522)
T KOG0461|consen  149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD  198 (522)
T ss_pred             HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence            2222222       379999999999    89999999999888776543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.52  E-value=6.9e-13  Score=97.68  Aligned_cols=122  Identities=14%  Similarity=0.090  Sum_probs=69.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------hHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------TTAY   76 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~   76 (184)
                      ...++|+++|.+|+||||++|+|++..... ......+...........+  .++.++||||.......       ...+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            367899999999999999999999876421 1112222222222222343  46999999996543211       1222


Q ss_pred             h--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         77 Y--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        77 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +  ...|++++|..++....-+.-...++.+....     ...--.+.+||+|++|...
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~F-----G~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSF-----GKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHh-----hhhhhccEEEEEECCccCC
Confidence            2  25899999966543211111122233333210     1122357899999999754

>PRK13768 GTPase; Provisional

Probab=99.52  E-value=1.8e-13  Score=99.60  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=70.2

Q ss_pred             EEEEEeCCCcccc---ccchHhhh---cC--CcEEEEEEeCCChhHHHHHH--HHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         57 KLQIWDTAGQERF---RTLTTAYY---RG--AMGILLMYDVTNLESFQHLN--YWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        57 ~~~l~D~~G~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      .+.++|+||+.+.   ...+..++   ..  .+++++++|+..+....+..  .++.....        ...+.|+++|+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~--------~~~~~~~i~v~  169 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ--------LRLGLPQIPVL  169 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH--------HHcCCCEEEEE
Confidence            5899999997653   33332222   22  89999999997543332221  22221111        12479999999


Q ss_pred             eCCCCCCCccccHH--HHH------------------------HHHHhcC--CCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        127 NKSDVKTQRAVQTK--DAQ------------------------MLADNYS--LPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       127 nK~D~~~~~~~~~~--~~~------------------------~~~~~~~--~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||+|+....+....  ...                        +.....+  .+++++|++++.|+++++++|.+.+..
T Consensus       170 nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        170 NKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             EhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            99998653322111  000                        1112223  578999999999999999999887643

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.51  E-value=2.4e-13  Score=112.19  Aligned_cols=121  Identities=20%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcC--CC--------------ccccccceeEE--EEEEEeCCeeEEEEEEe
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETY--YD--------------TYISTIGIDFK--QKIIDLDDVPTKLQIWD   62 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~~l~D   62 (184)
                      |.+.+..-+|+++|+.++|||||+++|+....  ..              +.....+....  ...+...+..+.+.++|
T Consensus        14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD   93 (731)
T PRK07560         14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID   93 (731)
T ss_pred             hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence            34556666899999999999999999975321  10              00111111111  11222344567799999


Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      |||+..|.......++.+|++++|+|+..+-.... ...+.....          .+.|.++++||+|..
T Consensus        94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----------~~~~~iv~iNK~D~~  152 (731)
T PRK07560         94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----------ERVKPVLFINKVDRL  152 (731)
T ss_pred             CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----------cCCCeEEEEECchhh
Confidence            99999887777888899999999999986533222 222333332          245779999999975

>smart00275 G_alpha G protein alpha subunit

Probab=99.51  E-value=1.7e-12  Score=98.21  Aligned_cols=118  Identities=15%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                      ..+.+||.+|+...+..|.+++.++++++||+|+++-          ..+.+....+..+...      ..-.+.|++|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~------~~~~~~piil~  257 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS------RWFANTSIILF  257 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC------ccccCCcEEEE
Confidence            4589999999999999999999999999999999963          3455555555555542      44578999999


Q ss_pred             EeCCCCCCC--------------cc-ccHHHH-----HHHHHh------cCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        126 GNKSDVKTQ--------------RA-VQTKDA-----QMLADN------YSLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       126 ~nK~D~~~~--------------~~-~~~~~~-----~~~~~~------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      +||.|+...              .. ......     ..+...      ..+..+.++|.+..++..+|+.+.+.+....
T Consensus       258 ~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      258 LNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             EecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            999998210              00 111122     112211      1245677899999999999999888777643

Subunit of G proteins that contains the guanine nucleotide binding site

>cd00066 G-alpha G protein alpha subunit

Probab=99.50  E-value=2.8e-12  Score=96.25  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=84.5

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      ...+.+||++|+...+..|..++.++++++||+|+++-          +.+.+....+..+...      ..-.+.|+++
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~------~~~~~~pill  233 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS------RWFANTSIIL  233 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC------ccccCCCEEE
Confidence            35689999999999999999999999999999999873          3455555555555542      4456899999


Q ss_pred             EEeCCCCCCC---------------c-cccHHHHHH-----HHHh-----cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        125 AGNKSDVKTQ---------------R-AVQTKDAQM-----LADN-----YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       125 v~nK~D~~~~---------------~-~~~~~~~~~-----~~~~-----~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++||.|+...               . .-+......     +...     ..+..+.++|.+..++..+|+.+.+.+...
T Consensus       234 ~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         234 FLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             EccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            9999997210               0 111122211     1111     234567789999999999999988877654


Q ss_pred             H
Q psy12922        179 T  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus       314 ~  314 (317)
T cd00066         314 N  314 (317)
T ss_pred             H
Confidence            3

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.50  E-value=1.7e-13  Score=114.42  Aligned_cols=121  Identities=20%  Similarity=0.172  Sum_probs=83.1

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCC----------------CccccccceeEEEEEEEe-------------
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY----------------DTYISTIGIDFKQKIIDL-------------   51 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~-------------   51 (184)
                      |.+.+.--+|+|+|+.++|||||+++|+.....                .+.....+.......+.+             
T Consensus        13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~   92 (843)
T PLN00116         13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE   92 (843)
T ss_pred             hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence            345667789999999999999999999863310                011111222211112222             


Q ss_pred             -CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         52 -DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        52 -~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                       .+..+.+.++||||+..|.......++.+|++++|+|+..+-....... +..+..          .++|+++++||+|
T Consensus        93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~~----------~~~p~i~~iNK~D  161 (843)
T PLN00116         93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----------ERIRPVLTVNKMD  161 (843)
T ss_pred             cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHHH----------CCCCEEEEEECCc
Confidence             2235678999999999998877888899999999999987644333333 333333          5789999999999


Q ss_pred             CC
Q psy12922        131 VK  132 (184)
Q Consensus       131 ~~  132 (184)
                      ..
T Consensus       162 ~~  163 (843)
T PLN00116        162 RC  163 (843)
T ss_pred             cc
Confidence            86

>PTZ00416 elongation factor 2; Provisional

Probab=99.49  E-value=1.9e-13  Score=113.95  Aligned_cols=120  Identities=20%  Similarity=0.194  Sum_probs=81.0

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcC--C--------------CccccccceeEEEEEEEeC--------CeeEE
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY--Y--------------DTYISTIGIDFKQKIIDLD--------DVPTK   57 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~   57 (184)
                      ++.+..-+|+++|+.++|||||+++|+....  .              .+.....+.......+.+.        +..+.
T Consensus        14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (836)
T PTZ00416         14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL   93 (836)
T ss_pred             hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence            4556667999999999999999999986321  0              0111111111111122222        22567


Q ss_pred             EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      +.++||||+..|.......++.+|++++|+|+..+-.... ...+..+..          .++|+++++||+|+.
T Consensus        94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----------~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----------ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----------cCCCEEEEEEChhhh
Confidence            9999999998887777788899999999999987643332 233344433          468999999999986

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.9e-13  Score=99.52  Aligned_cols=164  Identities=15%  Similarity=0.147  Sum_probs=112.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC---cCCCccccccceeEEE------------------EEEEeC------CeeEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE---TYYDTYISTIGIDFKQ------------------KIIDLD------DVPTKL   58 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~------------------~~~~~~------~~~~~~   58 (184)
                      -+++|.++|+..-|||||..+|++-   .++.+..+..++....                  ..-.++      ....++
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            5799999999999999999999872   2333333322221111                  000111      112467


Q ss_pred             EEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--c
Q psy12922         59 QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--A  136 (184)
Q Consensus        59 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~  136 (184)
                      .++|.||++-..+...+-..-.|+.++|++++.+..-.+-.+.+..+.-         ..-..++++.||.|+....  .
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---------igik~iiIvQNKIDlV~~E~Al  159 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---------IGIKNIIIVQNKIDLVSRERAL  159 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---------hccceEEEEecccceecHHHHH
Confidence            8899999988777666656678999999999976544344444444433         2456689999999996532  2


Q ss_pred             ccHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        137 VQTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       137 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      .++.++.+|.+.   .++|++++||..+.|++.+++.|.+.+...
T Consensus       160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            345556666653   368999999999999999999999887643

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.48  E-value=1.3e-12  Score=96.26  Aligned_cols=148  Identities=19%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCC---------------------------------CccccccceeEEEEEEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY---------------------------------DTYISTIGIDFKQKIID   50 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~   50 (184)
                      ....+|.+.||+..=||||||-+|+...-.                                 .+....+++++....+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            345689999999999999999998854211                                 11222344555544443


Q ss_pred             eCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHH--HHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         51 LDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHL--NYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        51 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      .+.  .+|.+.||||+++|-.....-...+|+.|+++|+..+- +++-  ..++..+.           .-..+++.+||
T Consensus        83 T~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-----------GIrhvvvAVNK  148 (431)
T COG2895          83 TEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-----------GIRHVVVAVNK  148 (431)
T ss_pred             ccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-----------CCcEEEEEEee
Confidence            333  45999999999999876666668899999999996542 2222  22333333           34568888999


Q ss_pred             CCCCCCcccc----HHHHHHHHHhcCC---CEEEeecCCCCCHH
Q psy12922        129 SDVKTQRAVQ----TKDAQMLADNYSL---PFYEVSCKQNINID  165 (184)
Q Consensus       129 ~D~~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gv~  165 (184)
                      +|+.+-.+.-    ..+-..++.+++.   .++++||..|+|+.
T Consensus       149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            9997633322    2334667777764   58999999999984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.47  E-value=4.1e-13  Score=97.26  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML  145 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (184)
                      +++..+...+++++|.+++|+|+++|. ++..+..|+..+..          .++|+++|+||+|+....+........+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----------~~i~~vIV~NK~DL~~~~~~~~~~~~~~   93 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----------QNIEPIIVLNKIDLLDDEDMEKEQLDIY   93 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------CCCCEEEEEECcccCCCHHHHHHHHHHH
Confidence            566677778899999999999999888 78889888876643          5799999999999976444443334434


Q ss_pred             HHhcCCCEEEeecCCCCCHHHHHHHHHH
Q psy12922        146 ADNYSLPFYEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  173 (184)
                       ...+.+++++||++|.|++++++.+.+
T Consensus        94 -~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        94 -RNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             -HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence             457889999999999999999987753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.47  E-value=1.6e-12  Score=92.08  Aligned_cols=150  Identities=13%  Similarity=0.071  Sum_probs=83.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC--------Cc----cccc--cceeEEEEEEEeCC------------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY--------DT----YIST--IGIDFKQKIIDLDD------------------   53 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~--------~~----~~~~--~~~~~~~~~~~~~~------------------   53 (184)
                      ....|+++|++|||||||++++......        .+    ....  .........+ ..+                  
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l-~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQI-NTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEE-cCCCcccCChHHHHHHHHHhc
Confidence            4578899999999999999998753110        00    0000  0000000000 001                  


Q ss_pred             -eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         54 -VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        54 -~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                       ....+.++|+.|.-...   ..+....+..+.|+|+.+.+...  .... .            ....|.++++||+|+.
T Consensus       100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~------------~~~~a~iiv~NK~Dl~  161 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYP-G------------MFKEADLIVINKADLA  161 (207)
T ss_pred             cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhH-h------------HHhhCCEEEEEHHHcc
Confidence             12346778888821101   11112345556788887554211  1111 1            1245679999999997


Q ss_pred             CCccccHHHHHHHHHh--cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        133 TQRAVQTKDAQMLADN--YSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       133 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ..............+.  .+++++++||++|.|++++++++.+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       162 EAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             ccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5322222233333333  34899999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1707|consensus

Probab=99.46  E-value=2.5e-12  Score=100.08  Aligned_cols=160  Identities=18%  Similarity=0.265  Sum_probs=119.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +-+++.++|+.++|||.+++.+.++.+......++...+....+...+....+.+.|.+-. ....+...- ..+|++.+
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            3478999999999999999999998887655566665666666666677767888887754 212221111 67899999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCCH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINI  164 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv  164 (184)
                      +||.+++.+++.....++.-..         ....||++|++|+|+.+..+.......+++.+.++ +.+.+|.++ .+-
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~---------~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~-~~s  571 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFD---------LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT-LSS  571 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhh---------ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC-CCC
Confidence            9999999999888877766654         37999999999999987554444445889999998 467778775 222


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIRE  177 (184)
Q Consensus       165 ~~~~~~l~~~~~~  177 (184)
                      .++|.+|..++..
T Consensus       572 ~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  572 NELFIKLATMAQY  584 (625)
T ss_pred             chHHHHHHHhhhC
Confidence            7888888776543

>cd01900 YchF YchF subfamily

Probab=99.46  E-value=7.8e-13  Score=96.67  Aligned_cols=81  Identities=20%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccccc----
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERFR----   70 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~----   70 (184)
                      |+++|.||||||||+|+|++........|+++.+.....+.+++.               +..+.++|+||.....    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998876666677776666666555442               2358999999954221    


Q ss_pred             cch---HhhhcCCcEEEEEEeCC
Q psy12922         71 TLT---TAYYRGAMGILLMYDVT   90 (184)
Q Consensus        71 ~~~---~~~~~~~d~~i~v~d~~   90 (184)
                      .+.   ...++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            111   22357899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.44  E-value=9.1e-13  Score=85.59  Aligned_cols=114  Identities=24%  Similarity=0.323  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccc-cccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYI-STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.++.|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997766643332 2222                           222223456788999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      ++.++..+++..  |...+..       .+..+.|.++++||.|+.+........        ...++++|+++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~-------~~k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLV-------GNKSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHh-------cCCCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhCCCcchhh
Confidence            999999888655  6666554       445678999999999985433332222        2235678899999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.44  E-value=1.2e-11  Score=93.71  Aligned_cols=156  Identities=13%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhC----cCCC------------ccccc---cceeEEE-----EEEEe-CCeeEE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDE----TYYD------------TYIST---IGIDFKQ-----KIIDL-DDVPTK   57 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~----~~~~------------~~~~~---~~~~~~~-----~~~~~-~~~~~~   57 (184)
                      +++-++.|+|+|+.++|||||+++|.+.    +...            ...+.   ++++...     ..+.. ++....
T Consensus        13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~   92 (492)
T TIGR02836        13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK   92 (492)
T ss_pred             HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence            4677899999999999999999999987    3221            11111   2222222     22322 345567


Q ss_pred             EEEEeCCCcc--------cccc------c---------------hHhhhc-CCcEEEEEE-eCC-----ChhHHHHHHHH
Q psy12922         58 LQIWDTAGQE--------RFRT------L---------------TTAYYR-GAMGILLMY-DVT-----NLESFQHLNYW  101 (184)
Q Consensus        58 ~~l~D~~G~~--------~~~~------~---------------~~~~~~-~~d~~i~v~-d~~-----~~~~~~~~~~~  101 (184)
                      ++++|++|..        +-..      .               ....+. .++..++|. |.+     ..+..+.-..+
T Consensus        93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            9999999921        1011      1               122344 788888887 664     11234445667


Q ss_pred             HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC--CCHHHHHHH
Q psy12922        102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN--INIDEAFLT  170 (184)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~~~~~  170 (184)
                      +.++..          .++|+++|+||.|.....  ......++..+++++++.+|+.+-  +.+..+++.
T Consensus       173 i~eLk~----------~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~  231 (492)
T TIGR02836       173 IEELKE----------LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE  231 (492)
T ss_pred             HHHHHh----------cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence            777766          699999999999944321  333344566778888888887643  334444433

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.44  E-value=9.2e-13  Score=99.44  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=81.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCc-cccc--cceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhh-----
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT-YIST--IGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY-----   76 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----   76 (184)
                      +.+++|+|+|.+|+|||||||+|.+-...++ ..++  +........+..+..+ .+.+||.||.....-....|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3578999999999999999999976322211 1221  1111222222233333 38999999964333233333     


Q ss_pred             hcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC-------CCCccccHH----HHHH
Q psy12922         77 YRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV-------KTQRAVQTK----DAQM  144 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~-------~~~~~~~~~----~~~~  144 (184)
                      +..-|.+|++.+-.    +... ......+..          .++|+++|-||+|.       ..++.....    .+++
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~----------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~  177 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQR----------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE  177 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHH----------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHH----------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH
Confidence            34568877776532    3222 233444544          58899999999996       111122211    2222


Q ss_pred             HHH----hcC---CCEEEeecCCC--CCHHHHHHHHHHHHHHHHhh
Q psy12922        145 LAD----NYS---LPFYEVSCKQN--INIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       145 ~~~----~~~---~~~~~~Sa~~~--~gv~~~~~~l~~~~~~~~~~  181 (184)
                      -+.    +.+   -++|.+|+.+-  .++..+.+.|.+.+..+++.
T Consensus       178 ~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  178 NCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            222    223   25888998854  45778888888877766553

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01882 BMS1 Bms1

Probab=99.44  E-value=6.9e-12  Score=89.89  Aligned_cols=140  Identities=11%  Similarity=0.092  Sum_probs=82.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .....|+++|.+|+|||||++.+.............+ .+   .+ .......+.++|+||.-  .. ....+..+|.++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            3457799999999999999999987532111111111 11   11 11234458899999853  22 233467899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-EEEEeCCCCCCCcccc---HHHHHH-HHH--hcCCCEEEee
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-VLAGNKSDVKTQRAVQ---TKDAQM-LAD--NYSLPFYEVS  157 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~-~~~--~~~~~~~~~S  157 (184)
                      +++|++.+..... ...+..+..          .+.|. ++|+||.|+.+.....   ...+.. +..  ..+.+++.+|
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~----------~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iS  177 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV----------HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLS  177 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH----------cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            9999986433222 233333333          34664 5599999986432211   112222 221  1257899999


Q ss_pred             cCCCCC
Q psy12922        158 CKQNIN  163 (184)
Q Consensus       158 a~~~~g  163 (184)
                      |+++-.
T Consensus       178 a~~~~~  183 (225)
T cd01882         178 GIVHGR  183 (225)
T ss_pred             eccCCC
Confidence            998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.44  E-value=3.8e-13  Score=95.94  Aligned_cols=153  Identities=15%  Similarity=0.150  Sum_probs=91.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCC----------Cccccccc----------------eeEEEEEEEeCC----
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY----------DTYISTIG----------------IDFKQKIIDLDD----   53 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----------~~~~~~~~----------------~~~~~~~~~~~~----   53 (184)
                      ..+.+.|.|.|+||+|||||+++|...-..          +...|.++                ...+...+-..+    
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG  105 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG  105 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence            345689999999999999999998642110          11111111                122222221222    


Q ss_pred             --------------eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12922         54 --------------VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD  119 (184)
Q Consensus        54 --------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (184)
                                    ..+.+.|++|.|--+..   .....-+|.+++|+.+..++..+.++.-+.++..            
T Consensus       106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD------------  170 (266)
T PF03308_consen  106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD------------  170 (266)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S------------
T ss_pred             ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc------------
Confidence                          23568889998843222   3455679999999999988888888888888877            


Q ss_pred             CeEEEEEeCCCCCCCccccHHHHHHHHH-------hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        120 VVKVLAGNKSDVKTQRAVQTKDAQMLAD-------NYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       120 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                         ++|+||+|..... ....+......       .+..|++.+||.++.|++++++.|.+.-
T Consensus       171 ---i~vVNKaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  171 ---IFVVNKADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             ---EEEEE--SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ---EEEEeCCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence               8999999954311 11111111111       1235799999999999999999987743

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.42  E-value=1.1e-11  Score=89.89  Aligned_cols=155  Identities=16%  Similarity=0.133  Sum_probs=100.6

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCC----------Cccccccce----------------eEEEEEEEe-----
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY----------DTYISTIGI----------------DFKQKIIDL-----   51 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----------~~~~~~~~~----------------~~~~~~~~~-----   51 (184)
                      .......|.|.|.||+|||||+..|...-..          +...|.++-                ..+...+..     
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG  126 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG  126 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence            3455679999999999999999998642210          111111110                111111111     


Q ss_pred             -------------CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCC
Q psy12922         52 -------------DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP  118 (184)
Q Consensus        52 -------------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (184)
                                   +...+.+.|++|.|--+..   ......+|.++++.=..-++..+.++.-+-++-.           
T Consensus       127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-----------  192 (323)
T COG1703         127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-----------  192 (323)
T ss_pred             hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-----------
Confidence                         1123668899999864433   3345678999999988888999999988888887           


Q ss_pred             CCeEEEEEeCCCCCCCccccHHHH---HHHH------HhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        119 DVVKVLAGNKSDVKTQRAVQTKDA---QMLA------DNYSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       119 ~~p~ivv~nK~D~~~~~~~~~~~~---~~~~------~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                          ++|+||.|.... +....+.   ..+.      ..+.-+++.+||.+|+|++++++.+.+-..
T Consensus       193 ----i~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         193 ----IIVINKADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             ----eeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence                899999995432 1111111   1111      122457999999999999999999877544

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.4e-11  Score=92.05  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=62.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC----------------eeEEEEEEeCCCc----
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----------------VPTKLQIWDTAGQ----   66 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G~----   66 (184)
                      .+++.|+|.||+|||||+|+++.........|++|++........+.                .+..+.++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999999877667788888766655443322                2356899999983    


Q ss_pred             cccccch---HhhhcCCcEEEEEEeCC
Q psy12922         67 ERFRTLT---TAYYRGAMGILLMYDVT   90 (184)
Q Consensus        67 ~~~~~~~---~~~~~~~d~~i~v~d~~   90 (184)
                      +....+=   ...++++|+++-|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            2223332   34468899999999987

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.42  E-value=1.3e-13  Score=99.20  Aligned_cols=112  Identities=15%  Similarity=0.195  Sum_probs=58.2

Q ss_pred             EEEEEeCCCccccccchHhhh--------cCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         57 KLQIWDTAGQERFRTLTTAYY--------RGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      .+.++|||||-++...+...-        ...-++++++|.....+ ...+..++..+..       ....+.|.+.|+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-------~~~~~lP~vnvls  164 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-------MLRLELPHVNVLS  164 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-------HHHHTSEEEEEE-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-------HhhCCCCEEEeee
Confidence            589999999887655443322        23457788888864322 1222333333322       2235899999999


Q ss_pred             CCCCCCCc---ccc----------------HHHHHHHHHhc---C-C-CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        128 KSDVKTQR---AVQ----------------TKDAQMLADNY---S-L-PFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       128 K~D~~~~~---~~~----------------~~~~~~~~~~~---~-~-~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      |+|+....   ...                ......++.-.   + . .++++|+++++|+.+++..+.+.+
T Consensus       165 K~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  165 KIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             ccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            99997521   000                00111222222   2 3 699999999999999998877654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1144|consensus

Probab=99.41  E-value=3.1e-12  Score=101.95  Aligned_cols=161  Identities=17%  Similarity=0.144  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC------------e----eEEEEEEeCCCcccccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD------------V----PTKLQIWDTAGQERFRT   71 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~l~D~~G~~~~~~   71 (184)
                      .=+||+|+..+|||-|+..+.+.++......+++.......+...+            .    -=.+.++||||++.|.+
T Consensus       476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn  555 (1064)
T KOG1144|consen  476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN  555 (1064)
T ss_pred             ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence            3479999999999999999998777554444433222221111110            0    00278899999999999


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--------------
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--------------  137 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------------  137 (184)
                      +.......+|.+|+|+|+..+--.+.+ .-++.++.          .+.|++|.+||+|-...|.-              
T Consensus       556 lRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~----------rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~  624 (1064)
T KOG1144|consen  556 LRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRM----------RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK  624 (1064)
T ss_pred             hhhccccccceEEEEeehhccCCcchh-HHHHHHHh----------cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence            999999999999999999854211111 12334443          69999999999997321110              


Q ss_pred             ---cHH---H----HHHHHH-hc-------------CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        138 ---QTK---D----AQMLAD-NY-------------SLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       138 ---~~~---~----~~~~~~-~~-------------~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                         ...   +    +.+|+. .+             -+.++++||.+|+||.+++.+|++....+.
T Consensus       625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence               000   0    112221 01             134688999999999999999988766543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.39  E-value=4.7e-12  Score=86.74  Aligned_cols=63  Identities=16%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             EEEEEeCCCccc----cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         57 KLQIWDTAGQER----FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        57 ~~~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      .+.|+||||...    ....+..+++.+|++++|.++....+-.+...+.+....          ....+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----------~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----------DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----------TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----------CCCeEEEEEcCC
Confidence            478999999542    335677888999999999999986555555554444433          334489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.38  E-value=1.6e-11  Score=91.71  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      .+.+.++||+|...   .....+..+|.++++.+...++   ++......+            .++|.++|+||+|+...
T Consensus       126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------------~~~~~ivv~NK~Dl~~~  187 (300)
T TIGR00750       126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGD---DLQGIKAGL------------MEIADIYVVNKADGEGA  187 (300)
T ss_pred             CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccH---HHHHHHHHH------------hhhccEEEEEcccccch
Confidence            45689999999532   2223566788888886554333   333322222            25667999999998753


Q ss_pred             ccccHHH------HHHHHH---hcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        135 RAVQTKD------AQMLAD---NYSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       135 ~~~~~~~------~~~~~~---~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .......      ...+..   .+..+++++||+++.|+++++++|.+...
T Consensus       188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            2211100      011111   12346899999999999999999988644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0410|consensus

Probab=99.38  E-value=7.7e-13  Score=96.45  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=100.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc---------cccccchHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ---------ERFRTLTTAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~   76 (184)
                      ...-|.++|.+|||||||+++|+.........-+-+.+........+.. ..+.+.||-|-         ..|++.... 
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLee-  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEE-  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence            3456899999999999999999975554443334444444443333432 24788899992         233333333 


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE----EEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK----VLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      ...+|+++-|.|+++|+.-++....+..+...       .-+..|.    +=|=||.|........        .+.+  
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-------gv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n~--  317 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQI-------GVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKNL--  317 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhc-------CCCcHHHHhHHHhhccccccccccCcc--------ccCC--
Confidence            35789999999999998877777777666663       2233333    4455777755421111        1122  


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      .+.+||++|.|++++.+.+...+..-
T Consensus       318 ~v~isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  318 DVGISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             ccccccccCccHHHHHHHHHHHhhhh
Confidence            47799999999999999888776543

>KOG0458|consensus

Probab=99.38  E-value=5.4e-12  Score=98.26  Aligned_cols=150  Identities=16%  Similarity=0.154  Sum_probs=94.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC--cC-----------------------------CCccccccceeEEEEEEEeCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE--TY-----------------------------YDTYISTIGIDFKQKIIDLDD   53 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   53 (184)
                      ...++.+++|+..+|||||+.+++..  +.                             ..+..+..+.+.  ....++.
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~fes  252 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTWFES  252 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEEEec
Confidence            35689999999999999999888742  11                             112222233333  3333455


Q ss_pred             eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---HH---HHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---FQ---HLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      ....++|+|+||+..|-.....-..++|+.++|+|++-..-   ++   ..+.....++.       .  ...-++|++|
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-------L--gi~qlivaiN  323 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-------L--GISQLIVAIN  323 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-------c--CcceEEEEee
Confidence            56679999999988887766666788999999999985321   11   12222233333       2  2667899999


Q ss_pred             CCCCCCC---cc-ccHHHHHHHH-Hhc-----CCCEEEeecCCCCCHH
Q psy12922        128 KSDVKTQ---RA-VQTKDAQMLA-DNY-----SLPFYEVSCKQNINID  165 (184)
Q Consensus       128 K~D~~~~---~~-~~~~~~~~~~-~~~-----~~~~~~~Sa~~~~gv~  165 (184)
                      |+|...=   |. .-...+..+. +..     .+.|++||+..|+|+-
T Consensus       324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence            9998641   11 1111122233 222     3579999999999974

>KOG3886|consensus

Probab=99.37  E-value=1.4e-12  Score=90.87  Aligned_cols=150  Identities=21%  Similarity=0.302  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-----chHhhhcCC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-----LTTAYYRGA   80 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----~~~~~~~~~   80 (184)
                      +-||+++|.+||||||+=..+..... .+...++.++++.+..+++-|-- .+.+||.+|++.+..     .....+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl-~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNL-VLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhh-eeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            45899999999999998665554222 23445666678888877666533 489999999874432     234567899


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHH----HHHHHHHhcCCCEE
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTK----DAQMLADNYSLPFY  154 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~----~~~~~~~~~~~~~~  154 (184)
                      +++++|+|+...+-..++..+-..+....     .+.+...+++..+|.|+.....  ....    ....+.....+..+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll-----~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f  157 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALL-----QNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCF  157 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHH-----hcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhccccccccc
Confidence            99999999998765555554444222221     4678999999999999965322  1111    22333334456777


Q ss_pred             EeecCCCC
Q psy12922        155 EVSCKQNI  162 (184)
Q Consensus       155 ~~Sa~~~~  162 (184)
                      ++|..+..
T Consensus       158 ~TsiwDet  165 (295)
T KOG3886|consen  158 PTSIWDET  165 (295)
T ss_pred             ccchhhHH
Confidence            77776544

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.36  E-value=2.6e-11  Score=92.47  Aligned_cols=159  Identities=18%  Similarity=0.244  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc--CC------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET--YY------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT   73 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   73 (184)
                      -+|+|+-+..-|||||+..|+.+.  |.            .+.....++....+.--+....++++|+||||+..|..--
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            479999999999999999998743  21            1111223334444443344455779999999999999988


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHHHHH-----
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQMLAD-----  147 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~-----  147 (184)
                      ...+...|++++++|+.++. +.+-+........          .+.+.|||+||.|.+..+.... ++...+..     
T Consensus        86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~  154 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT  154 (603)
T ss_pred             hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            88999999999999998642 3333444444443          4677799999999987543322 22222222     


Q ss_pred             --hcCCCEEEeecCCCC----------CHHHHHHHHHHHHHH
Q psy12922        148 --NYSLPFYEVSCKQNI----------NIDEAFLTLARLIRE  177 (184)
Q Consensus       148 --~~~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~~  177 (184)
                        ++..|++-.|++.|.          +++.+|+.|.+-+..
T Consensus       155 deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         155 DEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             hhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence              445788888988775          577888888876654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.32  E-value=1.5e-11  Score=90.07  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCCCccccHHHHHHHHHh--cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        119 DVVKVLAGNKSDVKTQRAVQTKDAQMLADN--YSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       119 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ..+-++|+||+|+...............+.  .+++++.+||++|+|++++.+||.+.
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            455699999999975322223233333322  36889999999999999999999774

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=5.2e-11  Score=90.32  Aligned_cols=156  Identities=18%  Similarity=0.108  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      -|+-.|+---|||||+..+++...   ..+....++.+.....+..++.  .+.++|.||++.+-.....-+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            478899999999999999998554   4555666776666666544444  58999999999888777777788999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH--HHHHHHHhcCCCEEEeecCCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK--DAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      |++.+++-..+. .+.+.-+...         .....++|+||+|..+.......  .+........++++.+|+++|.|
T Consensus        80 vV~~deGl~~qt-gEhL~iLdll---------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G  149 (447)
T COG3276          80 VVAADEGLMAQT-GEHLLILDLL---------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG  149 (447)
T ss_pred             EEeCccCcchhh-HHHHHHHHhc---------CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence            999975432222 2223334332         23445999999998764322111  11111113356889999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIR  176 (184)
Q Consensus       164 v~~~~~~l~~~~~  176 (184)
                      ++++.+.|.+...
T Consensus       150 I~~Lk~~l~~L~~  162 (447)
T COG3276         150 IEELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999999884

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.29  E-value=5.5e-11  Score=87.63  Aligned_cols=140  Identities=18%  Similarity=0.240  Sum_probs=76.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCcc----------ccccceeEEEEEEEeCCeeEEEEEEeCCCccc-------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTY----------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-------   68 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------   68 (184)
                      -.++|+|+|.+|+|||||+|.|.+.......          ..+.........+.-.+..+.+.++||||-..       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999986553221          12223333444455577888999999999211       


Q ss_pred             -----------cccch---------HhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         69 -----------FRTLT---------TAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        69 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                                 |....         ...=...|++++.++++... +.. -...+.++           ...+++|-|+.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-----------s~~vNvIPvIa  150 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-----------SKRVNVIPVIA  150 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-----------TTTSEEEEEES
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-----------cccccEEeEEe
Confidence                       11000         00012469999999987531 211 12334444           35788999999


Q ss_pred             CCCCCCCccccH--HHHHHHHHhcCCCEEEee
Q psy12922        128 KSDVKTQRAVQT--KDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       128 K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~S  157 (184)
                      |+|.....+...  ..+.......++.++...
T Consensus       151 KaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  151 KADTLTPEELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             TGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred             cccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence            999865333322  223444445566555443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0705|consensus

Probab=99.29  E-value=1.5e-11  Score=95.22  Aligned_cols=167  Identities=21%  Similarity=0.349  Sum_probs=129.5

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +.-.++|+.|+|..++|||+|+++++.+.+..+..+..+  ...+.+..++....+.+.|.+|...     ..|....|+
T Consensus        26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda   98 (749)
T KOG0705|consen   26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA   98 (749)
T ss_pred             cccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence            344679999999999999999999999888665544443  3345555778887788889888422     346678999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHH-hcCCCEEEeecC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLAD-NYSLPFYEVSCK  159 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~-~~~~~~~~~Sa~  159 (184)
                      +|||+.+.+..+++..+.+...+..+      .+...+|+++++++.-..  ..+...+.+..+++. ...|.+|++++.
T Consensus        99 vIfvf~~~d~~s~q~v~~l~~~l~~~------r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~at  172 (749)
T KOG0705|consen   99 VVFVFSVEDEQSFQAVQALAHEMSSY------RNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCAT  172 (749)
T ss_pred             eEEEEEeccccCHHHHHHHHhhcccc------cccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchh
Confidence            99999999999999998888887765      567889999999987653  244555555555554 446899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhh
Q psy12922        160 QNINIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~~~~~  182 (184)
                      +|.++...|..+...+...++++
T Consensus       173 yGlnv~rvf~~~~~k~i~~~~~q  195 (749)
T KOG0705|consen  173 YGLNVERVFQEVAQKIVQLRKYQ  195 (749)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhh
Confidence            99999999999998887765554

>KOG0082|consensus

Probab=99.29  E-value=3.4e-10  Score=84.68  Aligned_cols=128  Identities=13%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             EEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH----------HHHHHHHHHHHHHhcccCC
Q psy12922         44 FKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES----------FQHLNYWLKNIEEVGCNSN  113 (184)
Q Consensus        44 ~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~  113 (184)
                      .....+.+.+.  .+.+.|.+|+...+.-|.+++.++++++||+++++-+.          +.+...+++.+      ++
T Consensus       185 I~e~~F~~k~~--~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI------~n  256 (354)
T KOG0082|consen  185 IVEVEFTIKGL--KFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESI------CN  256 (354)
T ss_pred             eeEEEEEeCCC--ceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHH------hc
Confidence            33344445554  48999999999999999999999999999999986332          22223333333      33


Q ss_pred             CCCCCCCeEEEEEeCCCCCC--------------Ccc-ccHHHHH-----HHHH---hc--CCCEEEeecCCCCCHHHHH
Q psy12922        114 QNASPDVVKVLAGNKSDVKT--------------QRA-VQTKDAQ-----MLAD---NY--SLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus       114 ~~~~~~~p~ivv~nK~D~~~--------------~~~-~~~~~~~-----~~~~---~~--~~~~~~~Sa~~~~gv~~~~  168 (184)
                      +..-.+.++|+++||.|+-.              -.. -...++.     ++..   ..  .+....+.|.+..+|+.+|
T Consensus       257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf  336 (354)
T KOG0082|consen  257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF  336 (354)
T ss_pred             CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence            47778999999999999821              001 1111221     1111   11  2445667999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        169 LTLARLIREQT  179 (184)
Q Consensus       169 ~~l~~~~~~~~  179 (184)
                      ....+.+....
T Consensus       337 ~av~d~Ii~~n  347 (354)
T KOG0082|consen  337 DAVTDTIIQNN  347 (354)
T ss_pred             HHHHHHHHHHH
Confidence            99888877654

>smart00053 DYNc Dynamin, GTPase

Probab=99.29  E-value=8.1e-11  Score=84.55  Aligned_cols=68  Identities=12%  Similarity=0.084  Sum_probs=44.2

Q ss_pred             EEEEEeCCCcccc-------------ccchHhhhc-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE
Q psy12922         57 KLQIWDTAGQERF-------------RTLTTAYYR-GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK  122 (184)
Q Consensus        57 ~~~l~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  122 (184)
                      .+.++|+||....             ..+...|++ ..+.+++|+|+...-.-.+.......+.          ....|+
T Consensus       126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----------~~~~rt  195 (240)
T smart00053      126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----------PQGERT  195 (240)
T ss_pred             ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----------HcCCcE
Confidence            5889999996421             123455667 4568899998865322223334444443          357899


Q ss_pred             EEEEeCCCCCCC
Q psy12922        123 VLAGNKSDVKTQ  134 (184)
Q Consensus       123 ivv~nK~D~~~~  134 (184)
                      ++|+||.|..+.
T Consensus       196 i~ViTK~D~~~~  207 (240)
T smart00053      196 IGVITKLDLMDE  207 (240)
T ss_pred             EEEEECCCCCCc
Confidence            999999998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.2e-10  Score=94.85  Aligned_cols=118  Identities=19%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC--C----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY--Y----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+..-+|.|+|+..+|||||..+++...-  .                .+..+..++....-.+...+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            34567899999999999999999875221  0                11111222222333333343 56799999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +-.|..-....++-.|++++|+|+..+-..+.-.-|.+..           ..++|.++++||+|...
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----------~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----------KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----------hcCCCeEEEEECccccc
Confidence            9999988888899999999999999764333333333333           35899999999999754

>KOG0468|consensus

Probab=99.26  E-value=5.5e-11  Score=94.09  Aligned_cols=120  Identities=22%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccc-----------------cccceeEEEEEEE---eCCeeEEEEE
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYI-----------------STIGIDFKQKIID---LDDVPTKLQI   60 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~l   60 (184)
                      |.+.....+|+++|+.++|||+|+..|-.+..+....                 +..++.....++.   ..++++-+++
T Consensus       122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni  201 (971)
T KOG0468|consen  122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI  201 (971)
T ss_pred             ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence            4566677899999999999999999987654322211                 1111222222222   2567788999


Q ss_pred             EeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        61 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      .||||+-+|..-....++.+|++++|+|+..+-.+..-+. +....          ....|+.+|+||.|.
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhai----------q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAI----------QNRLPIVVVINKVDR  261 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHH----------hccCcEEEEEehhHH
Confidence            9999999999888888999999999999987654432222 22222          358999999999996

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.26  E-value=1.3e-10  Score=92.79  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=71.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cc---h
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TL---T   73 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~---~   73 (184)
                      +..++|+++|.+|+||||++|.|++... ........+...........+  ..+.++||||.....       ..   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            5568999999999999999999998653 333222222233222222344  348999999965321       11   1


Q ss_pred             Hhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         74 TAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        74 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      ..++.  ..|++++|..++.......-...++.+....     ...--..+|||+|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lF-----G~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVL-----GPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHh-----CHHhHcCEEEEEeCCccCC
Confidence            22333  4799999988763322112223344443310     1122356799999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1487|consensus

Probab=99.18  E-value=2.9e-10  Score=80.88  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cchHhhhcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TLTTAYYRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~   80 (184)
                      .+|.++|.|.+||||++..+.+.........+++.........+.+..  +++.|.||.-+..       .......+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence            489999999999999999999866555555555544444555455544  8999999943211       1112445788


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC----------------------------------------------
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ----------------------------------------------  114 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  114 (184)
                      +.+++|.|+..|-+-..+.+  .++..++...+.                                              
T Consensus       138 nli~~vld~~kp~~hk~~ie--~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D  215 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIE--KELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD  215 (358)
T ss_pred             cEEEEEeeccCcccHHHHHH--HhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence            99999999987644332211  222222221111                                              


Q ss_pred             -----------CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        115 -----------NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       115 -----------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                                 .+...+|++.+.||.|....++.+.        ...+ ..+++||.+++|++++++.+++.+.
T Consensus       216 aT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  216 ATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             cchhhhhhhhccCceeeeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhhcch
Confidence                       1123588888889888654323221        1223 2478999999999999999988664

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=1e-09  Score=79.50  Aligned_cols=153  Identities=13%  Similarity=0.076  Sum_probs=96.1

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhC----------------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDE----------------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+....++|..+|+..-|||||-.+++.-                ..+.+.....++...+..+...+..  +--+|.||
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPG   84 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPG   84 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCC
Confidence            34567899999999999999998887631                1122333344444444444444444  78889999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCC-eEEEEEeCCCCCCCccccHH---H
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV-VKVLAGNKSDVKTQRAVQTK---D  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~~~~---~  141 (184)
                      +..|-.....-..++|+.|+|++++++. +.+-+..+...++          -.+ .+++++||+|+.+..+....   +
T Consensus        85 HaDYvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarq----------vGvp~ivvflnK~Dmvdd~ellelVemE  153 (394)
T COG0050          85 HADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----------VGVPYIVVFLNKVDMVDDEELLELVEME  153 (394)
T ss_pred             hHHHHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhh----------cCCcEEEEEEecccccCcHHHHHHHHHH
Confidence            9888765555557899999999998743 2222222333332          245 45677799999875544332   3


Q ss_pred             HHHHHHhcC-----CCEEEeecC-CCCCHHHH
Q psy12922        142 AQMLADNYS-----LPFYEVSCK-QNINIDEA  167 (184)
Q Consensus       142 ~~~~~~~~~-----~~~~~~Sa~-~~~gv~~~  167 (184)
                      .+.+...++     .|++.-||. ..+|-..+
T Consensus       154 vreLLs~y~f~gd~~Pii~gSal~ale~~~~~  185 (394)
T COG0050         154 VRELLSEYGFPGDDTPIIRGSALKALEGDAKW  185 (394)
T ss_pred             HHHHHHHcCCCCCCcceeechhhhhhcCCcch
Confidence            344444543     567777776 44544443

>cd01859 MJ1464 MJ1464

Probab=99.14  E-value=2.6e-10  Score=77.21  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY  149 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  149 (184)
                      ..+..+.++++|++++|+|+.++..... ..+...+.          ..+.|+++|+||+|+......  .....+....
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----------~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~   69 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----------ELGKKLLIVLNKADLVPKEVL--EKWKSIKESE   69 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----------hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhC
Confidence            4556778888999999999987643222 12222222          236899999999998642221  1111233445


Q ss_pred             CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        150 SLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       150 ~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +.+++.+||+++.|++++++.+.+.+..
T Consensus        70 ~~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          70 GIPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             CCcEEEEEccccccHHHHHHHHHHHHhh
Confidence            6789999999999999999999887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2e-09  Score=81.84  Aligned_cols=131  Identities=13%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh--Cc------C-------CCc-----cccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD--ET------Y-------YDT-----YISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~--~~------~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      ++-..+|+-+|.+|||||-..|+-  +.      +       ...     .....++.+.+..+..+..++.++|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            345678999999999999998763  11      0       000     111234455555566666666799999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM  144 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  144 (184)
                      ++.|+.-.-..+..+|..++|+|+..+  .+.- .++++-++.          .++|++=++||.|-..  ..+...+.+
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl----------R~iPI~TFiNKlDR~~--rdP~ELLdE  156 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL----------RDIPIFTFINKLDREG--RDPLELLDE  156 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh----------cCCceEEEeecccccc--CChHHHHHH
Confidence            999988777778889999999999854  3332 333444443          6999999999999653  233333445


Q ss_pred             HHHhcC
Q psy12922        145 LADNYS  150 (184)
Q Consensus       145 ~~~~~~  150 (184)
                      +...++
T Consensus       157 iE~~L~  162 (528)
T COG4108         157 IEEELG  162 (528)
T ss_pred             HHHHhC
Confidence            555544

>cd01855 YqeH YqeH

Probab=99.05  E-value=1.7e-09  Score=75.56  Aligned_cols=94  Identities=13%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH--
Q psy12922         69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA--  146 (184)
Q Consensus        69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--  146 (184)
                      +...+..+++.+|++++|+|++++...     |...+..        ...+.|+++|+||+|+..... .......+.  
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--------~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~   89 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--------FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRA   89 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--------hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHH
Confidence            566778888999999999999875421     2222221        124689999999999864322 222222222  


Q ss_pred             ---HhcCC---CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        147 ---DNYSL---PFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       147 ---~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                         ...+.   .++++||++|+|+++++++|.+.+.
T Consensus        90 ~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          90 KAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence               22332   6899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3887|consensus

Probab=99.03  E-value=4.6e-09  Score=74.18  Aligned_cols=162  Identities=19%  Similarity=0.285  Sum_probs=97.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCc-cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc---hHhhhcCCcE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL---TTAYYRGAMG   82 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~~~d~   82 (184)
                      +.+|+++|...|||||+.+...+.-.+.+ ..-..+.......  +.+.-..+.+||.||+-.+-..   ....+++.-+
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~--is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH--ISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh--hhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            36799999999999999887665221111 0000010111111  2234456999999998665433   2456789999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-------ccccHHHHHHHH----HhcCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-------RAVQTKDAQMLA----DNYSL  151 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~----~~~~~  151 (184)
                      +++|+|+.+ +..+.+..+...+..     .+..++++.+-|++.|.|....       +.+.......++    .+..+
T Consensus       105 LifvIDaQd-dy~eala~L~~~v~r-----aykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~v  178 (347)
T KOG3887|consen  105 LIFVIDAQD-DYMEALARLHMTVER-----AYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQV  178 (347)
T ss_pred             EEEEEechH-HHHHHHHHHHHHhhh-----eeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceE
Confidence            999999874 344445444333332     1256889999999999998432       111111112222    23346


Q ss_pred             CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .|+.+|..+.. +-+.|..+.+.+..
T Consensus       179 sf~LTSIyDHS-IfEAFSkvVQkLip  203 (347)
T KOG3887|consen  179 SFYLTSIYDHS-IFEAFSKVVQKLIP  203 (347)
T ss_pred             EEEEeeecchH-HHHHHHHHHHHHhh
Confidence            68888888776 66777777776554

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.03  E-value=9.3e-09  Score=76.74  Aligned_cols=138  Identities=19%  Similarity=0.283  Sum_probs=83.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCc----------cccccceeEEEEEEEeCCeeEEEEEEeCCCccc---ccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---FRT   71 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---~~~   71 (184)
                      .-.++|+++|+.|+||||++|.|++......          ..++.........+.-++...+++++||||--.   ...
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5678999999999999999999998633221          223444555555666678888999999999211   011


Q ss_pred             chH-----------hhh--------------cCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         72 LTT-----------AYY--------------RGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        72 ~~~-----------~~~--------------~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                      .|.           .|+              ...+++++.+.++. ..+..+ ......+.           ..+-+|=|
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls-----------~~vNlIPV  168 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS-----------KRVNLIPV  168 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh-----------cccCeeee
Confidence            111           111              23688999998764 233222 12233333           46778889


Q ss_pred             EeCCCCCCCccccH--HHHHHHHHhcCCCEE
Q psy12922        126 GNKSDVKTQRAVQT--KDAQMLADNYSLPFY  154 (184)
Q Consensus       126 ~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~  154 (184)
                      +.|+|.....+...  ..+.+.....++++|
T Consensus       169 I~KaD~lT~~El~~~K~~I~~~i~~~nI~vf  199 (373)
T COG5019         169 IAKADTLTDDELAEFKERIREDLEQYNIPVF  199 (373)
T ss_pred             eeccccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence            99999854333222  223444444455544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.02  E-value=2.2e-09  Score=79.65  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             hhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922         75 AYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF  153 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      ..+.++|.+++|+|+.++. ++..+..|+..+..          .++|+++|+||+|+....  ............+.++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----------~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v  141 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----------AGIEPVIVLTKADLLDDE--EEELELVEALALGYPV  141 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----------cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeE
Confidence            3478899999999999887 67777777776654          468999999999997531  1122233345578899


Q ss_pred             EEeecCCCCCHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      +.+||+++.|+++++..|..
T Consensus       142 ~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         142 LAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EEEECCCCccHHHHHhhhcc
Confidence            99999999999998887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2655|consensus

Probab=99.02  E-value=1.5e-08  Score=76.13  Aligned_cols=145  Identities=17%  Similarity=0.264  Sum_probs=89.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC---------ccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-------c
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD---------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-------R   68 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~   68 (184)
                      ...+.++++|.+|.|||||+|.|+...+..         ....+.........+.-+|...+++++||||-.       .
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            446899999999999999999998764322         222244445555556567788899999999921       1


Q ss_pred             cccc------------------hHhhhc--CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         69 FRTL------------------TTAYYR--GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        69 ~~~~------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      +..+                  ....+.  ..+++++.+.++.. .+..+ ......+           ...+.+|-|+.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----------~~~vNiIPVI~  166 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----------SKKVNLIPVIA  166 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----------hccccccceee
Confidence            1111                  011112  46889999987742 22222 1222333           35788899999


Q ss_pred             CCCCCCCccccH--HHHHHHHHhcCCCEEEeecCCC
Q psy12922        128 KSDVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus       128 K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      |+|.....+...  ..+.+.....++++|.......
T Consensus       167 KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  167 KADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            999865444332  2345555566777666554433

>PRK12289 GTPase RsgA; Reviewed

Probab=99.01  E-value=2.9e-09  Score=80.79  Aligned_cols=89  Identities=18%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             hHhhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC
Q psy12922         73 TTAYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL  151 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  151 (184)
                      ....+.++|.+++|+|+.++. ....+..|+.....          .++|+++|+||+|+....+.  .........++.
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----------~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~  150 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----------TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGY  150 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCC
Confidence            344578999999999998875 33345566555533          57899999999999643221  222333456788


Q ss_pred             CEEEeecCCCCCHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      +++.+||+++.|++++++.+..
T Consensus       151 ~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        151 QPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             eEEEEEcCCCCCHHHHhhhhcc
Confidence            8999999999999999988754

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.00  E-value=8.9e-09  Score=77.25  Aligned_cols=162  Identities=15%  Similarity=0.101  Sum_probs=96.8

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccc--------------cceeEEEEEEEeCC---------------
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIST--------------IGIDFKQKIIDLDD---------------   53 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---------------   53 (184)
                      +....+.|.+.|+.+.|||||.-.|..+...+..-.+              .+-+.....+.+++               
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            4567799999999999999999887765443221111              11111111111111               


Q ss_pred             ------eeEEEEEEeCCCccccccch--HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         54 ------VPTKLQIWDTAGQERFRTLT--TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        54 ------~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                            .+.-+.++||.|++.|-...  ..+-++.|..++++.++++-+.-. ++.+--+.          .-+.|++++
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~----------a~~lPviVv  261 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL----------AMELPVIVV  261 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh----------hhcCCEEEE
Confidence                  12347889999999886543  344578999999999987643222 22222222          358999999


Q ss_pred             EeCCCCCCCccc------------------------cHHHHHHHHHhcC---CCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        126 GNKSDVKTQRAV------------------------QTKDAQMLADNYS---LPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       126 ~nK~D~~~~~~~------------------------~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +||+|+......                        ........+.+.+   +|+|.+|+.+|+|++-+.+ +...++
T Consensus       262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp  338 (527)
T COG5258         262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLP  338 (527)
T ss_pred             EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCC
Confidence            999998542110                        0011112222222   4899999999999876443 333333

>PRK00098 GTPase RsgA; Reviewed

Probab=98.98  E-value=3e-09  Score=79.39  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             hhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      .+.++|.+++|+|+.+++.... +..|+..+..          .++|+++|+||+|+.+..+ ............+.+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----------~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~  145 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----------NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVL  145 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEE
Confidence            4589999999999988865444 4566655543          4789999999999963222 12223444556788999


Q ss_pred             EeecCCCCCHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLA  172 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~  172 (184)
                      ++||+++.|++++++.+.
T Consensus       146 ~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        146 ELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EEeCCCCccHHHHHhhcc
Confidence            999999999999988764

>KOG1491|consensus

Probab=98.95  E-value=3.9e-09  Score=77.84  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC---------------eeEEEEEEeCCCc
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD---------------VPTKLQIWDTAGQ   66 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~   66 (184)
                      .+....+++.|+|.||+|||||+|+|+.........|+.+++.....+.++.               .+..+++.|++|.
T Consensus        15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL   94 (391)
T KOG1491|consen   15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL   94 (391)
T ss_pred             cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence            3445668999999999999999999999988888899999888777666644               2456899999984


Q ss_pred             c----ccccch---HhhhcCCcEEEEEEeCC
Q psy12922         67 E----RFRTLT---TAYYRGAMGILLMYDVT   90 (184)
Q Consensus        67 ~----~~~~~~---~~~~~~~d~~i~v~d~~   90 (184)
                      -    ....+-   ...++.+|+++-|+++.
T Consensus        95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            3    222232   23457899999988775

>TIGR00092 GTP-binding protein YchF

Probab=98.95  E-value=9.5e-09  Score=77.91  Aligned_cols=83  Identities=18%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcccc--
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERF--   69 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~--   69 (184)
                      ++++++|.||+|||||+++|++... .....|+++.+.....+.+++.               +.++.+.|.||....  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 6566677766666666655442               246889999995432  


Q ss_pred             --cc---chHhhhcCCcEEEEEEeCC
Q psy12922         70 --RT---LTTAYYRGAMGILLMYDVT   90 (184)
Q Consensus        70 --~~---~~~~~~~~~d~~i~v~d~~   90 (184)
                        ..   --...++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              11   2234568999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.95  E-value=1.1e-08  Score=79.14  Aligned_cols=114  Identities=13%  Similarity=0.136  Sum_probs=77.4

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      ...+.++|.+|+...+.-|.+++..+++++||+++++-          ..+.+....+..+-..      ..-.+.|++|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~------~~~~~~~iil  308 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN------PWFKNTPIIL  308 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS------GGGTTSEEEE
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC------cccccCceEE
Confidence            34589999999999999999999999999999998742          2244444555555442      4456899999


Q ss_pred             EEeCCCCCC------C----------cc--ccHHHHHHHHHh------------cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        125 AGNKSDVKT------Q----------RA--VQTKDAQMLADN------------YSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       125 v~nK~D~~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ++||.|+-.      +          ..  -.......+...            ..+.+..++|.+...+..+|+.+.+.
T Consensus       309 ~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  309 FLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             EEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            999999711      1          01  122222222211            12345688999999999999887664

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG2486|consensus

Probab=98.93  E-value=9.4e-10  Score=79.00  Aligned_cols=157  Identities=17%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc-ccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-TIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTL   72 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~   72 (184)
                      .+...++++.|.+|+|||||++-+........... ..+.......+   .....+.++|.||.          ..+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence            35668999999999999999999988554222222 22222222222   22234889999991          223344


Q ss_pred             hHhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc----ccHHHH---
Q psy12922         73 TTAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA----VQTKDA---  142 (184)
Q Consensus        73 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~---  142 (184)
                      ...|+.+   ---+++.+|++.+-.--+ ...++-+          ...++|+.+|+||||......    .....+   
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~----------ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~  278 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWL----------GENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN  278 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHH----------hhcCCCeEEeeehhhhhhhccccccCccccceee
Confidence            4444432   233455666664321101 0112222          236899999999999743110    011111   


Q ss_pred             ----HHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        143 ----QMLADNYSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       143 ----~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                          -+..-....|++-+|+.++.|++.++-.|.+.
T Consensus       279 f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  279 FQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             hhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence                11111223567889999999999988766653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.93  E-value=1.2e-08  Score=77.44  Aligned_cols=87  Identities=15%  Similarity=0.107  Sum_probs=65.4

Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHHHHHHhcCCCEEE
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~  155 (184)
                      ..++|.+++|++.....++..+..|+.....          .++|+++|+||+|+....+. ............+.++++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~  187 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLM  187 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEE
Confidence            4679999999998866778888888765533          46899999999999753221 112223344567889999


Q ss_pred             eecCCCCCHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~  173 (184)
                      +||+++.|+++++++|..
T Consensus       188 vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        188 VSSHTGEGLEELEAALTG  205 (347)
T ss_pred             EeCCCCcCHHHHHHHHhh
Confidence            999999999999988864

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.91  E-value=3e-09  Score=73.02  Aligned_cols=56  Identities=20%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ..++|+++|.||+|||||+|+|.+... .....|.++.....  +..+.   .+.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~~~---~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLDK---KVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEeCC---CEEEEECcCC
Confidence            348999999999999999999998554 44444555443332  22332   3889999993

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1547|consensus

Probab=98.91  E-value=4.5e-08  Score=69.19  Aligned_cols=144  Identities=21%  Similarity=0.257  Sum_probs=81.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCc-cc-----c-ccceeEEE--EEEEeCCeeEEEEEEeCCCcc---ccccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT-YI-----S-TIGIDFKQ--KIIDLDDVPTKLQIWDTAGQE---RFRTL   72 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~-----~-~~~~~~~~--~~~~~~~~~~~~~l~D~~G~~---~~~~~   72 (184)
                      ...++|+++|.+|.|||||+|+|........ ..     | ..+.+...  -.+.-.+...+++++||||-.   +-..+
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            4679999999999999999999987544221 11     1 11222322  233335666788999999921   11222


Q ss_pred             hH-----------hh------------hc--CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         73 TT-----------AY------------YR--GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        73 ~~-----------~~------------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      |.           .|            ++  ..+.+++.+..+. .++..+ ..++..+..           -+-++-|+
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----------vvNvvPVI  191 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----------VVNVVPVI  191 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----------hheeeeeE
Confidence            21           11            11  3577888887764 333332 233344433           45577888


Q ss_pred             eCCCCCC--CccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922        127 NKSDVKT--QRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus       127 nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      -|+|-..  ++..-..++++-....++.+++--+-+
T Consensus       192 akaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  192 AKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFD  227 (336)
T ss_pred             eecccccHHHHHHHHHHHHHHHHhcCcccccccccc
Confidence            9999643  222233344555556677666654443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.90  E-value=4e-09  Score=70.20  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      -+++++|.+|+|||||+|++....... ...+..  +.....+.+++   .+.+|||||.
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGK--TKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc--ccceEEEEeCC---CEEEEECCCc
Confidence            389999999999999999999866532 122222  23333444444   3799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1143|consensus

Probab=98.90  E-value=9.7e-09  Score=76.87  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc-----------------------ccceeEEEEEEEe----------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-----------------------TIGIDFKQKIIDL----------   51 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~----------   51 (184)
                      .-++|++++|...+|||||+-.|+.++.....-.                       ..+.+...+.+.+          
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            4478999999999999999988887655322111                       1111111111212          


Q ss_pred             CCeeEEEEEEeCCCccccccchHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         52 DDVPTKLQIWDTAGQERFRTLTTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +..+..+.++|.+|+..|.....+-+.  ..+..++|++++.+.+....+. +-.+..          -++|++++++|+
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~A----------L~iPfFvlvtK~  313 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIAA----------LNIPFFVLVTKM  313 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHHH----------hCCCeEEEEEee
Confidence            112345899999999998876654443  3577788888876544322222 223333          589999999999


Q ss_pred             CCCCCcc------------------------ccHHHHHHHHHhc---C-CCEEEeecCCCCCHHHHH
Q psy12922        130 DVKTQRA------------------------VQTKDAQMLADNY---S-LPFYEVSCKQNINIDEAF  168 (184)
Q Consensus       130 D~~~~~~------------------------~~~~~~~~~~~~~---~-~~~~~~Sa~~~~gv~~~~  168 (184)
                      |+.....                        -..+++...+++.   + .|+|.+|..+|+|++-+.
T Consensus       314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            9954211                        1222232222222   2 478899999999987543

>cd01858 NGP_1 NGP-1

Probab=98.87  E-value=8.6e-09  Score=69.88  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      ..++|+++|.||+|||||+|+|.+... .....+.++...  ..+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC---CEEEEECcC
Confidence            457899999999999999999998554 233333333222  2222222   278999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0448|consensus

Probab=98.83  E-value=1.1e-07  Score=75.98  Aligned_cols=143  Identities=15%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-Cccccccc-------------------------------------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIG-------------------------------------------   41 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~-------------------------------------------   41 (184)
                      ...||+|.|..++||||++|+++....- ....+++.                                           
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            4579999999999999999999865431 11111110                                           


Q ss_pred             eeEEEEEEEeCC-ee---EEEEEEeCCCcc---ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC
Q psy12922         42 IDFKQKIIDLDD-VP---TKLQIWDTAGQE---RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ  114 (184)
Q Consensus        42 ~~~~~~~~~~~~-~~---~~~~l~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (184)
                      .....+.+..++ +.   -.+.++|.||.+   +..+-...+...+|++|+|.++.+.-+..+ +.++..+..       
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~-------  259 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE-------  259 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc-------
Confidence            000111111111 00   136788999954   334444667789999999999986544332 334444433       


Q ss_pred             CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--------CCEEEeecC
Q psy12922        115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--------LPFYEVSCK  159 (184)
Q Consensus       115 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~  159 (184)
                         .++.++++.||.|.............+....++        --++++||+
T Consensus       260 ---~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  260 ---EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             ---cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence               256667777888986644433333333322222        236778844

>cd01858 NGP_1 NGP-1

Probab=98.81  E-value=2.7e-08  Score=67.44  Aligned_cols=90  Identities=10%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      .+..+|++++|+|+.+|..-. .......+..        ...+.|+++|+||+|+...... ......+........+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--------~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~   74 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--------EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFH   74 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--------ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEE
Confidence            357899999999999863211 1222222222        1346899999999999643221 11222232222233577


Q ss_pred             eecCCCCCHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +||+++.|++++++.+.+.+
T Consensus        75 iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          75 ASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eeccccccHHHHHHHHHHHH
Confidence            99999999999999987754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1954|consensus

Probab=98.81  E-value=3.6e-08  Score=73.72  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=79.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEe------CC-----------------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDL------DD-----------------------   53 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~------~~-----------------------   53 (184)
                      .+.-|+++|.-..||||+++.|+..+++.   ...|++  ++....+.-      +|                       
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            34679999999999999999999987742   222222  222111111      11                       


Q ss_pred             ----------eeEEEEEEeCCCcc-----------ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccC
Q psy12922         54 ----------VPTKLQIWDTAGQE-----------RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS  112 (184)
Q Consensus        54 ----------~~~~~~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  112 (184)
                                ..-.+.++||||.-           .|......|+..+|.++++||+..-+--.+....+..+.      
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk------  208 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK------  208 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh------
Confidence                      01247899999921           244566788999999999999875554445555555554      


Q ss_pred             CCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922        113 NQNASPDVVKVLAGNKSDVKTQRA  136 (184)
Q Consensus       113 ~~~~~~~~p~ivv~nK~D~~~~~~  136 (184)
                          +..-.+-||.||.|..+.++
T Consensus       209 ----G~EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  209 ----GHEDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             ----CCcceeEEEeccccccCHHH
Confidence                45667789999999766444

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.80  E-value=2.4e-08  Score=76.46  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=67.6

Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH----
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD----  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----  141 (184)
                      .+.|..+...+...++++++|+|+.+..     ..|...+...        ..+.|+++|+||+|+... ......    
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~--------~~~~piilV~NK~DLl~k-~~~~~~~~~~  115 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRF--------VGGNPVLLVGNKIDLLPK-SVNLSKIKEW  115 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHH--------hCCCCEEEEEEchhhCCC-CCCHHHHHHH
Confidence            4567777788888999999999997643     2244444442        136799999999998642 222222    


Q ss_pred             HHHHHHhcCC---CEEEeecCCCCCHHHHHHHHHHH
Q psy12922        142 AQMLADNYSL---PFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       142 ~~~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ..+++...++   .++.+||++|.|++++++.|.+.
T Consensus       116 l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       116 MKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            2334566676   48999999999999999988654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01855 YqeH YqeH

Probab=98.78  E-value=1e-08  Score=71.64  Aligned_cols=54  Identities=24%  Similarity=0.428  Sum_probs=36.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC---------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY---------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      +.+++++|.+|+|||||+|+|.....         .....+.++.+.  ..+..+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL--IKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee--EEEecCC---CCEEEeCcC
Confidence            36899999999999999999997432         223333443333  3333332   378999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01856 YlqF YlqF

Probab=98.78  E-value=2.4e-08  Score=68.68  Aligned_cols=57  Identities=19%  Similarity=0.319  Sum_probs=39.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ...++++++|.+|+|||||++++....+. ....+.++...  ..+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec---CCEEEEECCCC
Confidence            34579999999999999999999986652 22233333333  333333   23789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.77  E-value=3.2e-08  Score=85.95  Aligned_cols=114  Identities=17%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCCCcc----cccccee-EEEEEEEeCCeeEEEEEEeCCCc----c----ccccchHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGID-FKQKIIDLDDVPTKLQIWDTAGQ----E----RFRTLTTAY   76 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~----~----~~~~~~~~~   76 (184)
                      -+|+|++||||||++..- +..++-..    ..+.+.. .....+...+   .-.++||+|.    +    .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            479999999999999975 33332111    1111110 0111111222   2578999992    1    122335444


Q ss_pred             h---------cCCcEEEEEEeCCChhH--H-------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         77 Y---------RGAMGILLMYDVTNLES--F-------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        77 ~---------~~~d~~i~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      +         +..|++|+++|+.+--.  -       ..+...+.++..       ...-..|++||+||+|+...
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~-------~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELRE-------QLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHH-------HhCCCCCEEEEEecchhhcC
Confidence            3         35799999999874211  1       223334444444       56789999999999998653

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01859 MJ1464 MJ1464

Probab=98.76  E-value=3.1e-08  Score=67.02  Aligned_cols=57  Identities=23%  Similarity=0.379  Sum_probs=38.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      ....+++++|.+|+||||+++++.+... ....++.+.......+..++   .+.+|||||
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4567899999999999999999997543 22233333332222222332   489999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.75  E-value=8.1e-08  Score=64.96  Aligned_cols=84  Identities=14%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |.+++|+|+.+|.+....  ++.. ..       ....++|+++|+||+|+....+. ......+....+..++.+||++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~-------~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~   69 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VL-------IKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATN   69 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HH-------HhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccC
Confidence            689999999887544322  2221 11       12357999999999998542111 1112233333456689999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLI  175 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~  175 (184)
                      |.|++++++.+.+..
T Consensus        70 ~~gi~~L~~~i~~~~   84 (155)
T cd01849          70 GQGIEKKESAFTKQT   84 (155)
T ss_pred             CcChhhHHHHHHHHh
Confidence            999999999887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.74  E-value=4.8e-08  Score=72.63  Aligned_cols=57  Identities=21%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ...++|+++|.||+|||||+|+|.+... .....|.++....  .+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC---cEEEEECCCc
Confidence            3558999999999999999999998654 4444455444433  333333   3889999995

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.73  E-value=4.2e-08  Score=72.51  Aligned_cols=56  Identities=23%  Similarity=0.391  Sum_probs=39.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ..++++++|.||+|||||+|+|.+... .....+.++...  ..+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            468999999999999999999997653 333344444333  3333332   3789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.72  E-value=1.7e-08  Score=68.04  Aligned_cols=60  Identities=23%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      -.++++|++|||||||+|.|.....      .........+......+..+..   ..++||||-+.+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            3579999999999999999998632      1111122222223334444443   5789999976544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0463|consensus

Probab=98.72  E-value=2.6e-08  Score=74.75  Aligned_cols=150  Identities=16%  Similarity=0.140  Sum_probs=86.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCcc------------------cccccee-----EEE--------------EEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTY------------------ISTIGID-----FKQ--------------KII   49 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~-----~~~--------------~~~   49 (184)
                      +++|+++|+..+|||||+-.|++++.....                  ....+.+     ...              +.-
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            589999999999999999887765442110                  1111111     111              111


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      .+++....++++|.+|++.|-.....-+  ...|..++++-++..- .-..++.+-..          ..-.+|+++|+|
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLA----------LaL~VPVfvVVT  281 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLA----------LALHVPVFVVVT  281 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhh----------hhhcCcEEEEEE
Confidence            1223334578999999999876553322  2457777777665321 11112222211          235789999999


Q ss_pred             CCCCCCCccccHH--HHHH--------------------------HHHhcCCCEEEeecCCCCCHHHH
Q psy12922        128 KSDVKTQRAVQTK--DAQM--------------------------LADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus       128 K~D~~~~~~~~~~--~~~~--------------------------~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |+|+......++.  .+.+                          |..+.=||+|.+|..+|.++.-+
T Consensus       282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            9998643322221  1111                          12222378999999999998754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.72  E-value=3.8e-08  Score=66.56  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=39.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ....+++++|.||+|||||+|.+.+... .....+.++......  ..+   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec---CCEEEEECCCC
Confidence            3568899999999999999999998653 333344444444332  222   23899999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.69  E-value=5.8e-08  Score=73.17  Aligned_cols=56  Identities=27%  Similarity=0.404  Sum_probs=40.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ...+++|+|.||+|||||||+|.+... .....|  +.+.....+.....   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence            458899999999999999999999665 333344  33344444444443   789999994

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.68  E-value=2.4e-06  Score=57.06  Aligned_cols=146  Identities=13%  Similarity=0.106  Sum_probs=83.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCC-Cccc--------------cc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA-GQER--------------FR   70 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G~~~--------------~~   70 (184)
                      ..+||.+.|+||+||||++.++...-....   ..-..+....+.-.+...-|.++|+. |...              |.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            468999999999999999988875332111   11224555666667777778888876 4111              11


Q ss_pred             -------cc----hHhhhcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc
Q psy12922         71 -------TL----TTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ  138 (184)
Q Consensus        71 -------~~----~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (184)
                             ..    ....++.+|+  +++|--.|  ++-. +.+...+..       ......|++.++.+.+-.      
T Consensus        81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGp--MElks~~f~~~ve~-------vl~~~kpliatlHrrsr~------  143 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGP--MELKSKKFREAVEE-------VLKSGKPLIATLHRRSRH------  143 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCE--EEEecccc--hhhccHHHHHHHHH-------HhcCCCcEEEEEecccCC------
Confidence                   01    1222344454  45565544  2222 334444444       334678899999887632      


Q ss_pred             HHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        139 TKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                        -..+..+..+.-+++   .+.+|-+.+++.+.+.+.
T Consensus       144 --P~v~~ik~~~~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         144 --PLVQRIKKLGGVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             --hHHHHhhhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence              122333444443333   555666677877776654

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.67  E-value=1.3e-06  Score=62.61  Aligned_cols=128  Identities=11%  Similarity=0.033  Sum_probs=68.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhC--cCCCc-cccccceeEEEEEEEeC-CeeEEEEEEeCCCcccccc------ch
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDE--TYYDT-YISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRT------LT   73 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~------~~   73 (184)
                      .....-|.|+|++++|||+|+|.|.+.  .+... ....++........... +....+.++||+|......      ..
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            345577899999999999999999997  55322 12233333333333222 1235699999999543221      12


Q ss_pred             HhhhcC--CcEEEEEEeCCCh-hHHHHHHHHHHHHHH--hcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         74 TAYYRG--AMGILLMYDVTNL-ESFQHLNYWLKNIEE--VGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        74 ~~~~~~--~d~~i~v~d~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      ...+..  ++.+|+..+.... ..+..+....+....  ..............+++|+.-.++
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~  146 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL  146 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence            223333  7888887776533 233333333221100  000011133445566677666554

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0460|consensus

Probab=98.66  E-value=2.7e-07  Score=68.45  Aligned_cols=145  Identities=13%  Similarity=0.095  Sum_probs=91.3

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhC----------------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDE----------------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      +....++|.-+|+..-|||||-.+++.-                ..+.+..+.+  ......+.++.....+-=.|.||+
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI--TIn~aHveYeTa~RhYaH~DCPGH  127 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI--TINAAHVEYETAKRHYAHTDCPGH  127 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc--eEeeeeeeeeccccccccCCCCch
Confidence            3456799999999999999998877631                1122333333  344444444444444667799999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH---HHHH
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT---KDAQ  143 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~  143 (184)
                      ..|-.....-..+.|+.|+|+.++++. +.+-++.+....+.         .-..+++++||.|+.++.+.-+   -+++
T Consensus       128 ADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---------GV~~ivvfiNKvD~V~d~e~leLVEmE~R  197 (449)
T KOG0460|consen  128 ADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---------GVKHIVVFINKVDLVDDPEMLELVEMEIR  197 (449)
T ss_pred             HHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---------CCceEEEEEecccccCCHHHHHHHHHHHH
Confidence            888765555557899999999999853 33333333333332         2355788889999985433322   2345


Q ss_pred             HHHHhcC-----CCEEEeecC
Q psy12922        144 MLADNYS-----LPFYEVSCK  159 (184)
Q Consensus       144 ~~~~~~~-----~~~~~~Sa~  159 (184)
                      ++...++     +|++.=||.
T Consensus       198 ElLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  198 ELLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHHHHcCCCCCCCCeeecchh
Confidence            5555553     678875544

>KOG0467|consensus

Probab=98.64  E-value=1.9e-07  Score=75.45  Aligned_cols=115  Identities=21%  Similarity=0.212  Sum_probs=81.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC------------C--CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY------------Y--DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      +..-+|+++-+..-|||||+..|...+.            .  .+...+.++.....-+.+-..++.++++|+||+-.|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            4456899999999999999999876432            1  2233344444555555555577789999999999999


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                      .......+-+|++++.+|+..+-..+...- +.+.          ...+..+++|+||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~----------~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQA----------WIEGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHH----------HHccCceEEEEehhh
Confidence            988888889999999999986532222111 1211          234667799999999

>KOG0085|consensus

Probab=98.64  E-value=8.4e-08  Score=67.56  Aligned_cols=118  Identities=14%  Similarity=0.129  Sum_probs=82.0

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                      ..+++.|.+|+..-+.-|.+++.+.-.++|.+.++          +.+.+++.+.++..+..+      +.-.+.++|++
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y------PWF~nssVIlF  272 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY------PWFQNSSVILF  272 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc------ccccCCceEEE
Confidence            45778999999988888888888887777766554          345567777777777765      78889999999


Q ss_pred             EeCCCCCCCcc----------------ccHHHHHHHHHh----cC------CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        126 GNKSDVKTQRA----------------VQTKDAQMLADN----YS------LPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       126 ~nK~D~~~~~~----------------~~~~~~~~~~~~----~~------~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      .||.|+.++..                .+-..++++..+    .+      +.-..+.|.+.+|+.-+|....+.+....
T Consensus       273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            99999843111                111122333322    11      12345789999999999998888776543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.63  E-value=7.4e-07  Score=67.03  Aligned_cols=144  Identities=20%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC---------Cccc------------cccceeEEEEEEEe-------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY---------DTYI------------STIGIDFKQKIIDL-------------   51 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~---------~~~~------------~~~~~~~~~~~~~~-------------   51 (184)
                      ..-.|+++|++||||||++..|......         .+..            ...+..+.......             
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999887642110         0000            00111111110000             


Q ss_pred             CCeeEEEEEEeCCCccccccc----hHhh--------hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12922         52 DDVPTKLQIWDTAGQERFRTL----TTAY--------YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD  119 (184)
Q Consensus        52 ~~~~~~~~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (184)
                      ....+.+.++||||.......    ...+        ....+..++|+|++.+.  +.+.. ...+..          .-
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~----------~~  259 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHE----------AV  259 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHh----------hC
Confidence            112356899999995432211    1111        12467789999998542  22222 122221          11


Q ss_pred             CeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922        120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus       120 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  168 (184)
                      .+.-+|+||.|....    .-.+.......++|+..++  +|++++++-
T Consensus       260 ~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        260 GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            345799999995532    1123444566689988888  888887754

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.60  E-value=5.1e-07  Score=61.23  Aligned_cols=63  Identities=13%  Similarity=0.080  Sum_probs=38.8

Q ss_pred             EEEEEEeCCCccccccchHh--------hhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         56 TKLQIWDTAGQERFRTLTTA--------YYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      ....++|++|...-......        ..-..|.++.++|+.+-.. +.....+..++...+             ++|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad-------------~ivl  153 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD-------------RILL  153 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC-------------EEEE
Confidence            45688899996433332222        1234789999999865332 222344555665543             6899


Q ss_pred             eCCCC
Q psy12922        127 NKSDV  131 (184)
Q Consensus       127 nK~D~  131 (184)
                      ||+|+
T Consensus       154 nk~dl  158 (158)
T cd03112         154 NKTDL  158 (158)
T ss_pred             ecccC
Confidence            99995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.60  E-value=1.2e-07  Score=72.08  Aligned_cols=58  Identities=17%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCC-Ccccc-----ccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYY-DTYIS-----TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      ++|+|.+|+|||||+|+|...... ....+     ...++.....+.+++.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            689999999999999999975431 11111     1112223333444433   3589999987655

>cd01856 YlqF YlqF

Probab=98.59  E-value=3.4e-07  Score=62.97  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      ....+.++|.+++|+|+..+...... .    +...        ..+.|+++|+||+|+......  ....+.....+..
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~--------~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~   77 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKI--------LGNKPRIIVLNKADLADPKKT--KKWLKYFESKGEK   77 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh-h----hHhH--------hcCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCe
Confidence            35567899999999999876432111 1    1111        135789999999998643211  1111222233456


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ++.+||+++.|++++.+.+.+.+.
T Consensus        78 vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          78 VLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHH
Confidence            789999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0466|consensus

Probab=98.58  E-value=2.6e-08  Score=72.75  Aligned_cols=164  Identities=15%  Similarity=0.124  Sum_probs=100.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC---cCCCccccccceeEEEE--E-EEe--------------------------C
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE---TYYDTYISTIGIDFKQK--I-IDL--------------------------D   52 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~~--~-~~~--------------------------~   52 (184)
                      +-.++|.-+|+..-||||+.+++++-   .|..+..+..+......  . +.+                          .
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            34589999999999999999998863   22333333222211110  0 001                          1


Q ss_pred             Cee------EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         53 DVP------TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        53 ~~~------~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      +..      ..+.++|.||++-..+....-..-.|+.++.+..+.+..-.+..+.+..+..         -.-..++++.
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---------M~LkhiiilQ  186 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---------MKLKHIIILQ  186 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---------hhhceEEEEe
Confidence            111      2357789999987666554444456777777766542211111122222222         1235589999


Q ss_pred             eCCCCCCCcc--ccHHHHHHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        127 NKSDVKTQRA--VQTKDAQMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       127 nK~D~~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||.|+..+.+  .+.+++.+|....   ++|++++||.-+.|++.+.+.|.+.+..
T Consensus       187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            9999976332  3344556665533   6899999999999999999999887754

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.55  E-value=3.4e-07  Score=60.90  Aligned_cols=78  Identities=15%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      ..+..+|++++|+|+.++.+... ..+...+..       . ..++|+++|+||+|+.....  ...........+..++
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~-------~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii   75 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRP-PDLERYVKE-------V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVV   75 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCC-HHHHHHHHh-------c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEE
Confidence            45688999999999988764321 122222222       1 14789999999999864322  2233344555567899


Q ss_pred             EeecCCCCC
Q psy12922        155 EVSCKQNIN  163 (184)
Q Consensus       155 ~~Sa~~~~g  163 (184)
                      ++||+++.+
T Consensus        76 ~iSa~~~~~   84 (141)
T cd01857          76 FFSALKENA   84 (141)
T ss_pred             EEEecCCCc
Confidence            999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.54  E-value=7.7e-07  Score=65.86  Aligned_cols=91  Identities=10%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      ....+..+|++++|+|+..|.+...  ..+....           .+.|+++|+||+|+...... ......+ ...+.+
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----------~~kp~IiVlNK~DL~~~~~~-~~~~~~~-~~~~~~   79 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----------GNKPRLIVLNKADLADPAVT-KQWLKYF-EEKGIK   79 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----------CCCCEEEEEEccccCCHHHH-HHHHHHH-HHcCCe
Confidence            3456789999999999987644322  1111111           25799999999998642111 1111222 334567


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++.+||+++.|++.+.+.+.+.+.+.
T Consensus        80 vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        80 ALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHh
Confidence            89999999999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.53  E-value=9.3e-07  Score=66.82  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCcccccc-c---hHhh--hcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         56 TKLQIWDTAGQERFRT-L---TTAY--YRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      +.+.++||+|...... .   ...+  ..+.|..++|+|+..+.. .+....+...              -.+--+++||
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~--------------~~~~giIlTK  288 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA--------------VGIDGVILTK  288 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc--------------CCCCEEEEee
Confidence            4589999999653221 1   1111  125688899999976432 2222222111              1234789999


Q ss_pred             CCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHH
Q psy12922        129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLT  170 (184)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  170 (184)
                      .|......    .+...+...+.|+..++  +|++++++..+
T Consensus       289 lD~~~~~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        289 VDADAKGG----AALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ecCCCCcc----HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence            99754211    23334445688888887  79999876543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.51  E-value=1.2e-06  Score=64.49  Aligned_cols=95  Identities=19%  Similarity=0.129  Sum_probs=55.6

Q ss_pred             EEEEEEeCCCccccccchH-------hhh-----cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922         56 TKLQIWDTAGQERFRTLTT-------AYY-----RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV  123 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  123 (184)
                      +.+.++||||.........       ...     ...|..++|+|++.+.  +.+.. ...+...          -.+.-
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~----------~~~~g  221 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEA----------VGLTG  221 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhh----------CCCCE
Confidence            5689999999654322211       111     2378999999998542  22221 2222221          12457


Q ss_pred             EEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHH
Q psy12922        124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFL  169 (184)
Q Consensus       124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  169 (184)
                      +|+||.|......    ....+....+.|+..++  +|++++++..
T Consensus       222 ~IlTKlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       222 IILTKLDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             EEEEccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            9999999754221    23344445578888887  8888876543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.50  E-value=1e-06  Score=67.42  Aligned_cols=84  Identities=13%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      +.++|.+++|+++..+-....+..++..+..          .++|.++|+||+|+.............+  ..+.+++.+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----------~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~v  177 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----------SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAV  177 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----------cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEE
Confidence            5789999999999633333344555555544          4667789999999975311111122222  457889999


Q ss_pred             ecCCCCCHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLA  172 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~  172 (184)
                      |++++.|++++..++.
T Consensus       178 Sa~~g~gl~~L~~~L~  193 (356)
T PRK01889        178 SALDGEGLDVLAAWLS  193 (356)
T ss_pred             ECCCCccHHHHHHHhh
Confidence            9999999999888774

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.45  E-value=2.9e-05  Score=59.75  Aligned_cols=156  Identities=20%  Similarity=0.243  Sum_probs=90.3

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcC----C----------Cccccc-------cc---eeEEEEEEEe-CCeeEE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY----Y----------DTYIST-------IG---IDFKQKIIDL-DDVPTK   57 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----~----------~~~~~~-------~~---~~~~~~~~~~-~~~~~~   57 (184)
                      +++-.+=|.|+|+..+|||||+++|-..-.    .          .-+.+.       +.   +.-....+.+ ++..++
T Consensus        13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~k   92 (492)
T PF09547_consen   13 RTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVK   92 (492)
T ss_pred             hcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEE
Confidence            456678899999999999999999864211    0          001111       11   1111122333 467788


Q ss_pred             EEEEeCCCc--------------cccccchHh---------------hhc--CCcEEEEEEeCC----ChhHH-HHHHHH
Q psy12922         58 LQIWDTAGQ--------------ERFRTLTTA---------------YYR--GAMGILLMYDVT----NLESF-QHLNYW  101 (184)
Q Consensus        58 ~~l~D~~G~--------------~~~~~~~~~---------------~~~--~~d~~i~v~d~~----~~~~~-~~~~~~  101 (184)
                      ++++|..|-              +.-.+.|..               .++  ..-++++.-|-+    .++.+ +.-...
T Consensus        93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEerv  172 (492)
T PF09547_consen   93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERV  172 (492)
T ss_pred             EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHH
Confidence            999999881              111122211               111  234455555544    12333 333556


Q ss_pred             HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC--CCHHHHHHH
Q psy12922        102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN--INIDEAFLT  170 (184)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~~~~~  170 (184)
                      ++++..          -++|+++++|-.+-..  +.......++..+++++++++++.+-  +.+..+++.
T Consensus       173 I~ELk~----------igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~  231 (492)
T PF09547_consen  173 IEELKE----------IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE  231 (492)
T ss_pred             HHHHHH----------hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence            666665          5899999999987543  44445567788899999998887643  334444433

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.44  E-value=2.3e-06  Score=63.70  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      ....+..+|++++|+|+..+.+.+.  ..+....           .+.|+++|+||+|+.+...  ...........+.+
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----------~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~   82 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----------GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIK   82 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----------CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCe
Confidence            3456789999999999987644222  1122221           2679999999999864211  11112222334677


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++.+||+++.|++.+.+.+.+.+.+.
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHH
Confidence            89999999999999999988877654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=4.6e-06  Score=66.05  Aligned_cols=136  Identities=10%  Similarity=0.085  Sum_probs=79.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      .++=|+|+|+||+|||||++.|...-........++ .   .++ ..++..++++.+.|.  ...+++ ....-+|++++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-P---iTv-vsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlL  139 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-P---ITV-VSGKTRRITFLECPS--DLHQMI-DVAKIADLVLL  139 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-c---eEE-eecceeEEEEEeChH--HHHHHH-hHHHhhheeEE
Confidence            346788999999999999998876433222111111 1   111 456667788888883  222222 33466899999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-----HHHHH-hcCCCEEEeecC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-----QMLAD-NYSLPFYEVSCK  159 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~-~~~~~~~~~Sa~  159 (184)
                      .+|..-+--++.+ .+++-+..+         .-..++-|+|+.|+.....-.....     +.|.. ..|+.+|-+|..
T Consensus       140 lIdgnfGfEMETm-EFLnil~~H---------GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         140 LIDGNFGFEMETM-EFLNILISH---------GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             EeccccCceehHH-HHHHHHhhc---------CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            9998754333333 334445443         2445788999999864211111111     11111 226777877765

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.44  E-value=4e-07  Score=66.95  Aligned_cols=59  Identities=20%  Similarity=0.210  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      -.+++|.+|+|||||+|+|....      ..........++.....+..++.   -.|+||||-+++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence            46899999999999999998632      22333333333445555556533   4689999987654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.44  E-value=5.1e-07  Score=65.58  Aligned_cols=58  Identities=17%  Similarity=0.176  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCC-c-----cccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYD-T-----YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      .++++|.+|+|||||+|+|....... .     ......++.....+...+    ..++||||-..+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            67999999999999999999754311 1     111111122222333332    3689999975543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.43  E-value=5.1e-07  Score=68.73  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCC-Cccccc-----cceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYY-DTYIST-----IGIDFKQKIIDLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   69 (184)
                      ++|+|++|+|||||+|+|...... ....+.     ..++.....+..++.   ..++||||-..+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence            799999999999999999975431 111221     111222233334432   368999997543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.43  E-value=6.3e-07  Score=68.71  Aligned_cols=55  Identities=25%  Similarity=0.425  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE   67 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   67 (184)
                      .+|+++|.+|+|||||+|+|.....      .....|.++.+..  .+..++.   +.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCC
Confidence            4899999999999999999998432      2333444443333  3333222   5799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.43  E-value=4.1e-06  Score=57.34  Aligned_cols=134  Identities=15%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeC-CCcc--------------------
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT-AGQE--------------------   67 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G~~--------------------   67 (184)
                      ||++.|.||+||||+++++....... ..+  -..+....+.-.+....+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~--v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLP--VGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGG--EEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCc--cceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987643211 111  12344444444555555666666 3311                    


Q ss_pred             --cccc----chHhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC-CCCCCccccH
Q psy12922         68 --RFRT----LTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS-DVKTQRAVQT  139 (184)
Q Consensus        68 --~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~  139 (184)
                        .+..    .....+..+|  ++++|--.+  ++. ...|.+.+...       ...++|++.++.+. +.+       
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~-------l~s~~~vi~vv~~~~~~~-------  139 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKL-------LDSNKPVIGVVHKRSDNP-------  139 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHH-------HCTTSEEEEE--SS--SC-------
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHH-------HcCCCcEEEEEecCCCcH-------
Confidence              1111    1112223445  667775543  211 22344444442       23688999999888 433       


Q ss_pred             HHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922        140 KDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus       140 ~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                       ...++....++.+++++..+.+-+
T Consensus       140 -~l~~i~~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  140 -FLEEIKRRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             -CHHHHHTTTTSEEEE--TTTCCCH
T ss_pred             -HHHHHHhCCCcEEEEeChhHHhhH
Confidence             355666667788888877766644

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0447|consensus

Probab=98.41  E-value=2.8e-05  Score=61.49  Aligned_cols=82  Identities=11%  Similarity=0.174  Sum_probs=53.5

Q ss_pred             EEEEEeCCCcc-------------ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922         57 KLQIWDTAGQE-------------RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV  123 (184)
Q Consensus        57 ~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  123 (184)
                      ++.++|.||.-             ....+..+++++.+++|+|+--.+-+.-..  ..-..+..       ..+.+...|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS--nVTDLVsq-------~DP~GrRTI  483 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS--IVTDLVSQ-------MDPHGRRTI  483 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh--hHHHHHHh-------cCCCCCeeE
Confidence            57889999921             223455788999999999985443322111  11122222       346678899


Q ss_pred             EEEeCCCCCCCccccHHHHHHHHH
Q psy12922        124 LAGNKSDVKTQRAVQTKDAQMLAD  147 (184)
Q Consensus       124 vv~nK~D~~~~~~~~~~~~~~~~~  147 (184)
                      +|.||.|+++....+..+++++..
T Consensus       484 fVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  484 FVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             EEEeecchhhhccCCHHHHHHHHh
Confidence            999999998766666666666554

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=1.2e-06  Score=75.19  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=74.8

Q ss_pred             EEEcCCCCchHHHHHHHhhCcCC--C-ccccccc-eeEEEEEEEeCCeeEEEEEEeCCCcc--------ccccchHhh--
Q psy12922         11 LVLGDSNVGKTCIVHRFCDETYY--D-TYISTIG-IDFKQKIIDLDDVPTKLQIWDTAGQE--------RFRTLTTAY--   76 (184)
Q Consensus        11 ~i~G~~~sGKSsli~~l~~~~~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~--   76 (184)
                      +|+|++|+||||++..- +..|+  . ....... .......+...+   .-.++||+|--        .-...|..+  
T Consensus       129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            79999999999998742 22221  1 1011111 010111111111   25788999921        122334433  


Q ss_pred             -------hcCCcEEEEEEeCCChhH--HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH--HHH
Q psy12922         77 -------YRGAMGILLMYDVTNLES--FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA--QML  145 (184)
Q Consensus        77 -------~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~--~~~  145 (184)
                             .+..|++|+.+|+.+--+  ..+.......++....+.+.......|++|++||.|+....+.-....  ..-
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r  284 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER  284 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence                   256799999999874211  111212222222222222226778999999999999875332211111  222


Q ss_pred             HHhcCCCEEEeecCCCCCH
Q psy12922        146 ADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~gv  164 (184)
                      ..-+|+. +...+....+.
T Consensus       285 ~qvwG~t-f~~~~~~~~~~  302 (1188)
T COG3523         285 EQVWGVT-FPLDARRNANL  302 (1188)
T ss_pred             hhhceec-cccccccccch
Confidence            3334543 55666655343

>PRK13796 GTPase YqeH; Provisional

Probab=98.41  E-value=5.5e-07  Score=69.12  Aligned_cols=55  Identities=29%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE   67 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   67 (184)
                      -+++++|.+|+|||||+|+|.....      .....|.+|.+.  ..+..++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999986431      123334444333  23333332   4799999963

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.40  E-value=7.5e-06  Score=61.59  Aligned_cols=87  Identities=13%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             EEEEEeCCCccccccchHhhhc--------CCcEEEEEEeCCChhHHHH-H-HHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         57 KLQIWDTAGQERFRTLTTAYYR--------GAMGILLMYDVTNLESFQH-L-NYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      ...++++.|...-......+..        ..|+++-|+|+.+-..... . .....++...+             ++|+
T Consensus        86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-------------~ivl  152 (323)
T COG0523          86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-------------VIVL  152 (323)
T ss_pred             CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-------------EEEE
Confidence            4677888886544333333222        3588999999875433222 2 23334444332             7999


Q ss_pred             eCCCCCCCccccHHHHHHHHH--hcCCCEEEeec
Q psy12922        127 NKSDVKTQRAVQTKDAQMLAD--NYSLPFYEVSC  158 (184)
Q Consensus       127 nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa  158 (184)
                      ||.|+....+  ........+  +..++++.+|.
T Consensus       153 NK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         153 NKTDLVDAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             ecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            9999987554  233333333  33578888777

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.40  E-value=1.9e-06  Score=57.75  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=37.7

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                      .+.+.++||+|....   ...++..+|.++++....-.+.+.-.+.......               =++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~---------------~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIA---------------DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhc---------------CEEEEeCCC
Confidence            356899999986422   2347788999999998874444433333222221               279999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=2.2e-06  Score=65.86  Aligned_cols=93  Identities=17%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH----HHH
Q psy12922         68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK----DAQ  143 (184)
Q Consensus        68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~  143 (184)
                      .|...........+.+++|+|+.+..     ..|...+...        ..+.|+++|+||+|+... .....    ...
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~--------~~~kpviLViNK~DLl~~-~~~~~~i~~~l~  123 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRF--------VGNNPVLLVGNKADLLPK-SVKKNKVKNWLR  123 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHH--------hCCCCEEEEEEchhhCCC-ccCHHHHHHHHH
Confidence            34444444333334899999987642     2244444432        136789999999999642 22222    233


Q ss_pred             HHHHhcCC---CEEEeecCCCCCHHHHHHHHHHH
Q psy12922        144 MLADNYSL---PFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       144 ~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      .++...++   .++.+||++|.|++++++.|.+.
T Consensus       124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34555665   57999999999999999998664

>KOG0464|consensus

Probab=98.37  E-value=6.5e-07  Score=68.23  Aligned_cols=116  Identities=20%  Similarity=0.211  Sum_probs=85.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc--------CCCc--------cccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET--------YYDT--------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      --+|.++.+..+||||.-.+++.-.        +...        .....++..++.-+..+=+.+++.++||||+-.|.
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            3578999999999999998876411        1110        11123445566666667677789999999999998


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      --...+++-.|+++.|+|.+.+-..+.+.-|.+           ....++|-+.++||+|...
T Consensus       117 leverclrvldgavav~dasagve~qtltvwrq-----------adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----------ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----------ccccCCchhhhhhhhhhhh
Confidence            888889999999999999997644444445533           2356899999999999854

>KOG4273|consensus

Probab=98.37  E-value=6.7e-06  Score=58.81  Aligned_cols=116  Identities=21%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             eeEEEEEcCCCC--chHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          7 TYKILVLGDSNV--GKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         7 ~~~i~i~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ..-++++|.+|+  ||-+|+.+|....+.........+.+..+++........+.++=.+--+++.-.........-+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            356799999998  999999999988886665555555555555433222222333222211222222222334557889


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      +|||++....+..++.|+.....        +..+ .++.++||.|.
T Consensus        84 mvfdlse~s~l~alqdwl~htdi--------nsfd-illcignkvdr  121 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDI--------NSFD-ILLCIGNKVDR  121 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccc--------ccch-hheeccccccc
Confidence            99999998889999999764432        2222 24677899996

>KOG0099|consensus

Probab=98.35  E-value=1.6e-05  Score=57.31  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=75.8

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                      .+|+.+|.+|+...+.-|...+...-+++||+..++-          +.+.+...++..+=.-      ..-..+.+|++
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnN------RwL~tisvIlF  275 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNN------RWLRTISVILF  275 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhh------hHHhhhheeEE
Confidence            3589999999999999999999999999999987641          1222222222222111      23346789999


Q ss_pred             EeCCCCCC------------------------------CccccHHHHHHHHHh-------------cCCCEEEeecCCCC
Q psy12922        126 GNKSDVKT------------------------------QRAVQTKDAQMLADN-------------YSLPFYEVSCKQNI  162 (184)
Q Consensus       126 ~nK~D~~~------------------------------~~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~  162 (184)
                      +||-|+..                              .+......+..+.+.             .-|.+.++.|.+.+
T Consensus       276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe  355 (379)
T KOG0099|consen  276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE  355 (379)
T ss_pred             ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence            99999821                              000111111112111             12556778999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIREQT  179 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~  179 (184)
                      ++..+|+...+.+...+
T Consensus       356 nIrrVFnDcrdiIqr~h  372 (379)
T KOG0099|consen  356 NIRRVFNDCRDIIQRMH  372 (379)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998877776544

>KOG0459|consensus

Probab=98.32  E-value=1e-06  Score=66.77  Aligned_cols=157  Identities=14%  Similarity=0.068  Sum_probs=93.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD   52 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   52 (184)
                      ....+++.++|+..+||||+-..+....-                               ..+.....+.+.....+...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            46679999999999999999766542110                               01111123333333444344


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      ..  ++.+.|+||+..|-.....-+.++|..++|+++.-.+.   |+.--.........      ........++++||+
T Consensus       156 ~~--~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La------kt~gv~~lVv~vNKM  227 (501)
T KOG0459|consen  156 NK--RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA------KTAGVKHLIVLINKM  227 (501)
T ss_pred             ce--eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH------HhhccceEEEEEEec
Confidence            43  48999999999888766666788999999998854321   22221111111111      123456678999999


Q ss_pred             CCCCC-ccc-cH----HHHHHHHHhc------CCCEEEeecCCCCCHHHHH
Q psy12922        130 DVKTQ-RAV-QT----KDAQMLADNY------SLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus       130 D~~~~-~~~-~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~~~  168 (184)
                      |-+.. +.. ..    .....+....      ...++++|..+|.++++..
T Consensus       228 ddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  228 DDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             cCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            97541 111 01    1122233322      2458999999999988754

>KOG3859|consensus

Probab=98.31  E-value=2.7e-06  Score=61.69  Aligned_cols=117  Identities=18%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccc----cccceeEEEEEEEeCCeeEEEEEEeCCCc-------cccccc-
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYI----STIGIDFKQKIIDLDDVPTKLQIWDTAGQ-------ERFRTL-   72 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~~~~~-   72 (184)
                      ...++|+.+|.+|-|||||++.|.+..+..++.    |........+.+.-.+....++++||.|-       +.|..+ 
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            356899999999999999999999977744333    33333333333434566677899999981       122211 


Q ss_pred             ----------hH---------hhh--cCCcEEEEEEeCCChhHHHHHHH-HHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         73 ----------TT---------AYY--RGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        73 ----------~~---------~~~--~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                                ..         ..+  ...+++++.+.++. .++..+.- ....+.           .++.+|-|+.|.|
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-----------skVNIIPvIAKaD  187 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-----------SKVNIIPVIAKAD  187 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-----------hhhhhHHHHHHhh
Confidence                      10         111  23577888888874 45544432 233333           3566677788888


Q ss_pred             CCC
Q psy12922        131 VKT  133 (184)
Q Consensus       131 ~~~  133 (184)
                      -..
T Consensus       188 tis  190 (406)
T KOG3859|consen  188 TIS  190 (406)
T ss_pred             hhh
Confidence            643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.29  E-value=2e-06  Score=63.95  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCcc-c-----cccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTY-I-----STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      -.++++|++|+|||||+|.|.+....... .     ...........+..++.   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999975432111 1     11111222233334322   3689999986653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.27  E-value=2.3e-06  Score=64.04  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCC-ccccc-----cceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYD-TYIST-----IGIDFKQKIIDLDDVPTKLQIWDTAGQER   68 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   68 (184)
                      .++++|++|+|||||+|.|.+..... ...+.     ..+......+..++.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            58999999999999999998754321 11111     011122223333332   47899999754

>PRK13695 putative NTPase; Provisional

Probab=98.26  E-value=5.4e-05  Score=52.16  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++|++.|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998754

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.26  E-value=1.5e-05  Score=61.03  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.++++|++|+||||++..|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999998753

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.25  E-value=5.4e-06  Score=57.37  Aligned_cols=66  Identities=20%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             EEEEEEeCCCccccccch-----HhhhcCCcEEEEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTLT-----TAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~-----~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      ....++++.|......+.     ..-.-..+.++.|+|+.+-....... .+..++...+             ++|+||+
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-------------vIvlnK~  151 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-------------VIVLNKI  151 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-------------EEEEE-G
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-------------EEEEecc
Confidence            346778888855444431     01123468899999997643333333 3334443322             7999999


Q ss_pred             CCCCC
Q psy12922        130 DVKTQ  134 (184)
Q Consensus       130 D~~~~  134 (184)
                      |+...
T Consensus       152 D~~~~  156 (178)
T PF02492_consen  152 DLVSD  156 (178)
T ss_dssp             GGHHH
T ss_pred             ccCCh
Confidence            98753

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.21  E-value=2.5e-05  Score=55.45  Aligned_cols=63  Identities=24%  Similarity=0.246  Sum_probs=38.0

Q ss_pred             EEEEEeC-CCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         57 KLQIWDT-AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        57 ~~~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      .+.++|| +|.+.|.   ....+.+|.+++|+|++- .++...++ +.++...        ..-.++.+|+||.|..
T Consensus       135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e--------lg~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE--------LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH--------hCCceEEEEEeeccch
Confidence            3455554 3443333   233567899999999974 45544444 3333331        1148999999999843

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=5.9e-06  Score=64.20  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.|+++|++|+||||++..|...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988653

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.20  E-value=2.5e-05  Score=58.89  Aligned_cols=65  Identities=9%  Similarity=0.144  Sum_probs=39.4

Q ss_pred             EEEEEEeCCCccccccchHhhhc--------CCcEEEEEEeCCChhHH-HHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYR--------GAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      ....++++.|...-..+...++.        ..++++.|+|+.+-... ........++...+             +||+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD-------------~Ivl  157 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD-------------RILL  157 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC-------------EEEE
Confidence            34678899997655444444321        24889999999753321 11122234444432             7999


Q ss_pred             eCCCCCC
Q psy12922        127 NKSDVKT  133 (184)
Q Consensus       127 nK~D~~~  133 (184)
                      ||+|+..
T Consensus       158 nK~Dl~~  164 (318)
T PRK11537        158 TKTDVAG  164 (318)
T ss_pred             eccccCC
Confidence            9999876

>KOG1424|consensus

Probab=98.18  E-value=3.2e-06  Score=65.90  Aligned_cols=55  Identities=18%  Similarity=0.217  Sum_probs=39.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      .+.|+++|.||+||||+||+|.+... .....|..+.-+  .++.+...   +-++|.||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF--QTi~ls~~---v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF--QTIFLSPS---VCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee--EEEEcCCC---ceecCCCCc
Confidence            58999999999999999999999654 444444444333  33434433   789999995

>KOG2485|consensus

Probab=98.15  E-value=5.3e-06  Score=60.99  Aligned_cols=61  Identities=21%  Similarity=0.372  Sum_probs=41.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCc------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDET------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      .+.+++|+|+|.||+|||||+|++-...      ......|..+..+... +.+...+. +-++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~-vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPP-VYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCc-eEEecCCCc
Confidence            3567999999999999999999876522      2344455555444432 33443332 778899993

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.13  E-value=3.4e-05  Score=60.11  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~   28 (184)
                      ..-|+++|.+||||||++..|.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999998886

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.13  E-value=4.3e-05  Score=53.65  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=45.4

Q ss_pred             EEEEEEeCCCccccccc----hHhhh--cCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         56 TKLQIWDTAGQERFRTL----TTAYY--RGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      +.+.++||+|.......    ...++  ...+-+++|++++... .++....++..+              .+-=+++||
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~--------------~~~~lIlTK  149 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF--------------GIDGLILTK  149 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS--------------STCEEEEES
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc--------------cCceEEEEe
Confidence            34899999995443221    11111  2567889999988543 233222222221              122578999


Q ss_pred             CCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        129 SDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      .|....    .=.+..+....+.|+-.+|
T Consensus       150 lDet~~----~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  150 LDETAR----LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             TTSSST----THHHHHHHHHHTSEEEEEE
T ss_pred             ecCCCC----cccceeHHHHhCCCeEEEE
Confidence            996542    1234555666677655544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.11  E-value=6.8e-05  Score=59.75  Aligned_cols=134  Identities=18%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCC-----------Cccccc------------cceeEEEEEEE------e-CCeeE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYY-----------DTYIST------------IGIDFKQKIID------L-DDVPT   56 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~-----------~~~~~~------------~~~~~~~~~~~------~-~~~~~   56 (184)
                      .-.|+|+|++|+||||++..|......           .+....            .+..+....-.      + .-..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            357899999999999999887642110           000000            00011100000      0 00235


Q ss_pred             EEEEEeCCCccccccchH---hhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         57 KLQIWDTAGQERFRTLTT---AYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~---~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      .+.|+||+|.........   ..+.  .....++|++.+.  +..++...+..+..           ..+.-+|+||.|.
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----------~~~~gvILTKlDE  496 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----------AKPQGVVLTKLDE  496 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----------hCCeEEEEecCcC
Confidence            689999999643322110   0011  1234567777763  23344444444432           2456799999997


Q ss_pred             CCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        132 KTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      ..    ..-.........+.|+..++
T Consensus       497 t~----~lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        497 TG----RFGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             cc----chhHHHHHHHHhCCCEEEEe
Confidence            43    12234455556676655544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.11  E-value=5.7e-05  Score=51.91  Aligned_cols=82  Identities=17%  Similarity=0.076  Sum_probs=44.7

Q ss_pred             EEEEEEeCCCcccccc----chHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRT----LTTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.++|++|......    ....+.  ...+.+++|+|...+..   ...+...+...         .+ ..-+|.||.
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~---------~~-~~~viltk~  149 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA---------LG-ITGVILTKL  149 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh---------CC-CCEEEEECC
Confidence            4578899999643221    111111  34899999999875432   22333444321         11 357788999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEE
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      |......    .....+...++|+.
T Consensus       150 D~~~~~g----~~~~~~~~~~~p~~  170 (173)
T cd03115         150 DGDARGG----AALSIRAVTGKPIK  170 (173)
T ss_pred             cCCCCcc----hhhhhHHHHCcCeE
Confidence            9754211    12225555666644

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.10  E-value=5.8e-05  Score=59.10  Aligned_cols=86  Identities=19%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCcccccc----chHhh--hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRT----LTTAY--YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.|+||+|......    ....+  .-..+.+++|+|+..+.   +.......+...          -...-+|+||.
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~----------~~i~giIlTKl  250 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA----------LGLTGVILTKL  250 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh----------CCCCEEEEeCc
Confidence            5689999999432211    11111  12567789999987542   222333333321          11235778999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      |......    .+.......++|+..++.
T Consensus       251 D~~~rgG----~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        251 DGDARGG----AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             cCccccc----HHHHHHHHHCcCEEEEeC
Confidence            9643111    145556666777666543

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.06  E-value=2.8e-05  Score=59.59  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEE-----------------EEEeCC----------eeE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQK-----------------IIDLDD----------VPT   56 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~----------~~~   56 (184)
                      .=.|+++|++|+||||-+-.|.....   ........+.|.+.-                 .+-.+.          ..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            44689999999999999988765433   111112222222210                 000000          124


Q ss_pred             EEEEEeCCCccccccch----Hhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         57 KLQIWDTAGQERFRTLT----TAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                      .+.++||.|.+.+....    ..++.  ...-..+|++++..  .++++..+.++...           .+==+++||.|
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----------~i~~~I~TKlD  349 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----------PIDGLIFTKLD  349 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----------CcceeEEEccc
Confidence            58999999976655432    23333  23445678888754  56667766666542           11247889999


Q ss_pred             CCC
Q psy12922        131 VKT  133 (184)
Q Consensus       131 ~~~  133 (184)
                      -..
T Consensus       350 ET~  352 (407)
T COG1419         350 ETT  352 (407)
T ss_pred             ccC
Confidence            653

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=0.0001  Score=56.83  Aligned_cols=134  Identities=15%  Similarity=0.125  Sum_probs=69.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC---------CCcccc------------ccceeEEEEE--------EE-eC-Cee
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY---------YDTYIS------------TIGIDFKQKI--------ID-LD-DVP   55 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~---------~~~~~~------------~~~~~~~~~~--------~~-~~-~~~   55 (184)
                      .-.|+++|++||||||++..|...-.         ..+..+            ..+..+....        +. .. ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            46799999999999999998863211         000000            0111111000        00 00 012


Q ss_pred             EEEEEEeCCCccccccc----hHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTL----TTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.++||+|.......    ...++  ...+.+++|+|++..  ..++...+..+..           -.+-=+++||.
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----------~~idglI~TKL  387 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----------IHIDGIVFTKF  387 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----------CCCCEEEEEcc
Confidence            45899999996432211    12222  234677889988633  2333333333322           22346899999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      |....    .=.+..++...++|+..++
T Consensus       388 DET~k----~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        388 DETAS----SGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             cCCCC----ccHHHHHHHHHCcCEEEEe
Confidence            97542    2234555666677755544

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.03  E-value=7.6e-05  Score=58.55  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=69.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCc----C------CCcccc-----------ccceeEEEEEEEeC-----------C
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDET----Y------YDTYIS-----------TIGIDFKQKIIDLD-----------D   53 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~----~------~~~~~~-----------~~~~~~~~~~~~~~-----------~   53 (184)
                      .+..|+++|.+|+||||++..|...-    .      .+.+.+           ..+..+.......+           .
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            45789999999999999988775311    0      011111           01111111000000           0


Q ss_pred             eeEEEEEEeCCCccccccch------HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         54 VPTKLQIWDTAGQERFRTLT------TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      ..+.+.|+||+|........      ...+...|.+++|+|++...   +.......+..          .-...-+|+|
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----------~l~i~gvIlT  240 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----------AVGIGGIIIT  240 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----------cCCCCEEEEe
Confidence            12358999999964432111      11134678899999987642   22222223222          1112367889


Q ss_pred             CCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      |.|.....    =.+.......+.|+..++
T Consensus       241 KlD~~a~~----G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        241 KLDGTAKG----GGALSAVAETGAPIKFIG  266 (437)
T ss_pred             cccCCCcc----cHHHHHHHHHCcCEEEEe
Confidence            99965311    123444555566655544

>TIGR00959 ffh signal recognition particle protein

Probab=98.00  E-value=8.7e-05  Score=58.08  Aligned_cols=86  Identities=20%  Similarity=0.064  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCccccccc----hHh--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTL----TTA--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.++||||.......    ...  ..-+.+.+++|+|+..+   ++.......+...          -...=+|.||.
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~----------v~i~giIlTKl  249 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNER----------LGLTGVVLTKL  249 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhh----------CCCCEEEEeCc
Confidence            45899999995332111    111  12356888999998754   2333333334321          11346779999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      |......    .+...+...++|+..++.
T Consensus       250 D~~~~~G----~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       250 DGDARGG----AALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             cCccccc----HHHHHHHHHCcCEEEEeC
Confidence            9543111    155566667777666543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.94  E-value=0.00011  Score=57.53  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCccccc----cchHhhhc---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         56 TKLQIWDTAGQERFR----TLTTAYYR---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      +.+.++||+|.....    .....++.   ...-..+|++.+..  ...+...+..+..           -.+--+++||
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~-----------~~~~~vI~TK  366 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR-----------LPLDGLIFTK  366 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC-----------CCCCEEEEec
Confidence            468999999965432    12223333   23466788888643  2333333333322           1123689999


Q ss_pred             CCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922        129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      .|......    .+..+....+.|+..++  +|.+|
T Consensus       367 lDet~~~G----~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        367 LDETSSLG----SILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             cccccccc----HHHHHHHHHCCCEEEEe--CCCCC
Confidence            99754222    35566667777765554  34443

>KOG0465|consensus

Probab=97.93  E-value=6.2e-05  Score=60.10  Aligned_cols=118  Identities=20%  Similarity=0.184  Sum_probs=75.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CC---------------ccccccceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YD---------------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER   68 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   68 (184)
                      ++.-+|.+.-+-.|||||+-++.+.... ..               +.....++..+..-....-..+++.++||||+-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            3445788899999999999888664211 00               0011112222222111222256799999999988


Q ss_pred             cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      |----...++-.|+.++++|...+-.-+...-| .++.          ..++|.+.++||+|...
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~----------ry~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMK----------RYNVPRICFINKMDRMG  170 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHH----------hcCCCeEEEEehhhhcC
Confidence            776666778889999999999866433333333 3333          35999999999999754

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.93  E-value=0.00011  Score=54.27  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             hcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         77 YRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      ..+.|-.++|+.+.+|+- ..-+..++-....          .++..++++||+|+.+..+.............+.+.+.
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----------~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~  146 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----------GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF  146 (301)
T ss_pred             ccccceEEEEEeccCCCCCHHHHHHHHHHHHH----------cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence            345777888888888864 3334444444433          56666888999999875544445567777888999999


Q ss_pred             eecCCCCCHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~  173 (184)
                      +|+++++|++++.+.+..
T Consensus       147 ~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         147 VSAKNGDGLEELAELLAG  164 (301)
T ss_pred             ecCcCcccHHHHHHHhcC
Confidence            999999999998877653

>KOG2484|consensus

Probab=97.92  E-value=9.9e-06  Score=61.41  Aligned_cols=56  Identities=18%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      ...++|+|+|.||+||||+||.|..... .....|+.+..  ...+..+.   .+.|.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s--mqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS--MQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh--hhheeccC---CceeccCCc
Confidence            5679999999999999999999998654 44445554432  22332333   388999999

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.90  E-value=7.1e-05  Score=41.09  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             cCCcEEEEEEeCCC--hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922         78 RGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD  130 (184)
Q Consensus        78 ~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (184)
                      .-.++++|++|++.  +.+.++-...+..+...        -.+.|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--------F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--------FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--------TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--------cCCCCEEEEEeccC
Confidence            34689999999985  34577777888888874        35999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.89  E-value=0.0004  Score=53.00  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++.|..|||||||++.++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999999853

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK08118 topology modulation protein; Reviewed

Probab=97.89  E-value=1.1e-05  Score=55.25  Aligned_cols=23  Identities=22%  Similarity=0.567  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998864

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.89  E-value=1.1e-05  Score=55.75  Aligned_cols=23  Identities=26%  Similarity=0.661  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.89  E-value=1.2e-05  Score=51.77  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

...

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.88  E-value=0.00021  Score=43.71  Aligned_cols=69  Identities=19%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-hHhhhcCCcEEEEEEe
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-TTAYYRGAMGILLMYD   88 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   88 (184)
                      +++.|.+|+||||+...+...-.....        ..  ...+    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~--------~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK--------RV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC--------eE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887763321110        11  1112    4889999986433221 1355667899999998


Q ss_pred             CCCh
Q psy12922         89 VTNL   92 (184)
Q Consensus        89 ~~~~   92 (184)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            8743

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.88  E-value=0.00014  Score=45.49  Aligned_cols=82  Identities=22%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             EEEEc-CCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922         10 ILVLG-DSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus        10 i~i~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      |.+.| ..|+||||+...+...-.. ...+..       .+..+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl-------~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL-------LIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE-------EEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56677 5689999998776543221 111111       1111111 568999999864322  2356678999999998


Q ss_pred             CCChhHHHHHHHHHH
Q psy12922         89 VTNLESFQHLNYWLK  103 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~  103 (184)
                      .+ ..++.....+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 455666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.84  E-value=0.00018  Score=55.86  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-++++|++||||||++..|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999988864

>PRK07261 topology modulation protein; Provisional

Probab=97.84  E-value=1.5e-05  Score=54.82  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +|+|+|++|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=0.00031  Score=53.94  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCccccccc----hHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTL----TTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.++||+|.......    ...+..  ..+..++|++++.  ...++...+..+.           .-.+--+|+||.
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~-----------~l~i~glI~TKL  352 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA-----------EIPIDGFIITKM  352 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC-----------cCCCCEEEEEcc
Confidence            46899999996443221    122222  3466677777642  2333333333321           223446889999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      |....    .=.+..++...+.|+..+|
T Consensus       353 DET~~----~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        353 DETTR----IGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             cCCCC----ccHHHHHHHHHCCCEEEEe
Confidence            96532    1124455666677765554

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.79  E-value=0.00036  Score=46.23  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             EEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC
Q psy12922         12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN   91 (184)
Q Consensus        12 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (184)
                      .-|.+|+|||++.-.+...-.. ......-.+..   .......+.+.++|+|+..  .......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            4567899999996655432110 00000000100   0011122668999999743  223356788899999999886 


Q ss_pred             hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         92 LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      ..++......++.+...        ....++.+|+|+.+..
T Consensus        78 ~~s~~~~~~~l~~l~~~--------~~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 PTSITDAYALIKKLAKQ--------LRVLNFRVVVNRAESP  110 (139)
T ss_pred             hhHHHHHHHHHHHHHHh--------cCCCCEEEEEeCCCCH
Confidence            34555555555555442        2456778999999744

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.79  E-value=0.00029  Score=55.86  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      --++++|++||||||++..|..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            4589999999999999998875

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.79  E-value=0.00057  Score=52.94  Aligned_cols=139  Identities=14%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-------------CCcccc------------ccceeEEEEEEE-------eCCe
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-------------YDTYIS------------TIGIDFKQKIID-------LDDV   54 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-------------~~~~~~------------~~~~~~~~~~~~-------~~~~   54 (184)
                      .-.|+++|++|+||||.+..|.....             ..+...            ..+..+......       ..-.
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            45789999999999999988764211             000000            011111111000       0012


Q ss_pred             eEEEEEEeCCCcccccc----chHhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         55 PTKLQIWDTAGQERFRT----LTTAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      .+.+.++||+|......    -...++..   ..-.++|+|++..  ...+...+.....           -.+-=+++|
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----------~~~~~~I~T  320 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----------FSYKTVIFT  320 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----------CCCCEEEEE
Confidence            34589999999543221    11223232   2257899999865  3334443333322           224468999


Q ss_pred             CCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922        128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      |.|....    .=.+..+....+.|+..++  +|.+|
T Consensus       321 KlDet~~----~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        321 KLDETTC----VGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             eccCCCc----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence            9996542    1123445555666654443  45555

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.76  E-value=2.2e-05  Score=52.04  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+++|+|||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998853

...

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.76  E-value=3e-05  Score=43.60  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..+|.|+.||||||+++++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999999765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.75  E-value=0.00053  Score=47.40  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      =.++++|+.|||||||++.+.+-.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            368999999999999999988754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.74  E-value=3.5e-05  Score=54.12  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY   32 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~   32 (184)
                      .|+|+|++|||||||++.+-.-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            579999999999999999987654

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=0.00093  Score=49.26  Aligned_cols=132  Identities=16%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC---------CCccc------------cccceeEEEEEEEe-----------CCee
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY---------YDTYI------------STIGIDFKQKIIDL-----------DDVP   55 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~---------~~~~~------------~~~~~~~~~~~~~~-----------~~~~   55 (184)
                      -+++++|++|+||||++..+...-.         ..+..            ...+.++... ...           ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            5899999999999999987754211         00000            0011111110 000           0113


Q ss_pred             EEEEEEeCCCccccccc----hHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTL----TTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.++||+|.......    +..++  .+.+-.++|+|++..  .+++..++..+..           -.+-=+++||.
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----------~~~~~~I~TKl  221 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----------IHIDGIVFTKF  221 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----------CCCCEEEEEee
Confidence            56899999996532211    11222  244678999998732  2333333333322           23346899999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      |....    .=.+..++...+.|+..++
T Consensus       222 Det~~----~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        222 DETAS----SGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             cCCCC----ccHHHHHHHHHCcCEEEEe
Confidence            97642    1234455556677765544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.00039  Score=57.93  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -|+++|+.||||||.+..|...
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhh
Confidence            5799999999999999988753

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.71  E-value=0.0043  Score=42.24  Aligned_cols=140  Identities=14%  Similarity=0.175  Sum_probs=95.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ....|+++|..+.++..|.+++.....          ++..+......-+         -..+...    .=...|.++|
T Consensus        14 n~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~a~sLP---------Lp~e~~~----lRprIDlIVF   70 (176)
T PF11111_consen   14 NTATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHLAKSLP---------LPSENNN----LRPRIDLIVF   70 (176)
T ss_pred             ceeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEEeccCC---------CcccccC----CCceeEEEEE
Confidence            357899999999999999999986321          1111111111111         1111111    1245899999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      ++|..+..++...+.-+..+..       .+..++ +.+++|-....+...+......+++..+++|++.+.-.+.++..
T Consensus        71 vinl~sk~SL~~ve~SL~~vd~-------~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   71 VINLHSKYSLQSVEASLSHVDP-------SFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             EEecCCcccHHHHHHHHhhCCh-------hhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            9999999999888887777765       233344 45555555555556788889999999999999999988888877


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      .+-..|.+.+.
T Consensus       143 ~lAqRLL~~lq  153 (176)
T PF11111_consen  143 SLAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHHH
Confidence            76666666554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.70  E-value=4e-05  Score=44.39  Aligned_cols=21  Identities=24%  Similarity=0.590  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |++.|++||||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.64  E-value=5.3e-05  Score=54.35  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      |+++|++|||||||+|.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999988743

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.64  E-value=0.00046  Score=43.50  Aligned_cols=99  Identities=13%  Similarity=0.090  Sum_probs=57.3

Q ss_pred             cCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh
Q psy12922         14 GDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE   93 (184)
Q Consensus        14 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   93 (184)
                      +..|+||||+...|...-.........-.+...     . .+..+.++|+|+....  .....+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~-----~-~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDL-----Q-FGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC-----C-CCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence            456799999876665422111011111111111     0 0114899999985432  2344667899999999876 45


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCC-CCeEEEEEeC
Q psy12922         94 SFQHLNYWLKNIEEVGCNSNQNASP-DVVKVLAGNK  128 (184)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK  128 (184)
                      ++.....+.+.+...       ... ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~-------~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVL-------DYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHc-------CCCCcCceEEEecC
Confidence            677777777777663       222 4567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.62  E-value=6e-05  Score=53.69  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -|+|+|++|||||||++.+..-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37999999999999999988744

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.60  E-value=0.00073  Score=44.36  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-.+++.|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999988754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06217 hypothetical protein; Validated

Probab=97.60  E-value=5.8e-05  Score=52.46  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.59  E-value=4.4e-05  Score=51.96  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999875

>KOG0780|consensus

Probab=97.59  E-value=0.00036  Score=53.19  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=52.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc---------------------ccceeEEEEEEEe-------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS---------------------TIGIDFKQKIIDL-------------   51 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~-------------   51 (184)
                      ++--|+++|..|+||||.+-.|....-...+..                     -..+.++...-..             
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            445689999999999999887754211000000                     0112222211111             


Q ss_pred             CCeeEEEEEEeCCCccc-----cccch-HhhhcCCcEEEEEEeCCChhHHHHHHH
Q psy12922         52 DDVPTKLQIWDTAGQER-----FRTLT-TAYYRGAMGILLMYDVTNLESFQHLNY  100 (184)
Q Consensus        52 ~~~~~~~~l~D~~G~~~-----~~~~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~  100 (184)
                      ....+.+.|+||+|.-.     |..+. ..-.-+.|-+|+|+|++-+...+....
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~  234 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR  234 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence            11235689999999322     11111 122345799999999987655444433

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.58  E-value=0.00044  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      |+|+|++||||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK03839 putative kinase; Provisional

Probab=97.56  E-value=6.9e-05  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +|+++|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.54  E-value=7.8e-05  Score=49.09  Aligned_cols=23  Identities=13%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|+.|||||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999988854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.53  E-value=8.2e-05  Score=48.23  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998765

...

>PRK14530 adenylate kinase; Provisional

Probab=97.52  E-value=8.5e-05  Score=52.97  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999864

>KOG3347|consensus

Probab=97.48  E-value=9.4e-05  Score=48.91  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=23.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....+|+|.|.||+|||||..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            35668999999999999999999875

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.47  E-value=0.00019  Score=50.89  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ......-|+|+|++|||||||++.|...
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3456677899999999999999999754

>PRK13949 shikimate kinase; Provisional

Probab=97.47  E-value=0.00011  Score=50.36  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+|+|++||||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998875

>KOG2423|consensus

Probab=97.47  E-value=5.7e-05  Score=57.53  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=0.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+.+-|.++|.||+||||+||+|-...+ ...+.+..+     +.+.+-....++-++|.||
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET-----KVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET-----KVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc-----hHHHHHHHHhceeEecCCC

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.45  E-value=0.00016  Score=49.89  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=24.7

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |.......-|+++|.+||||||+.+.+...
T Consensus         1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          1 MQMKPNGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            444556678999999999999999988753

>KOG0469|consensus

Probab=97.45  E-value=0.00058  Score=53.85  Aligned_cols=116  Identities=21%  Similarity=0.189  Sum_probs=73.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc------------CCC----ccccccceeEEEE--------------EEEeCCe
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET------------YYD----TYISTIGIDFKQK--------------IIDLDDV   54 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~------------~~~----~~~~~~~~~~~~~--------------~~~~~~~   54 (184)
                      ..--++-++-+..-|||||-..|....            +.+    +..+..++....-              .-..++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            334567888899999999999886421            111    1111111111110              0111334


Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      .+-+.++|.||+-.|.+-....++-.|+.++|+|..++--.+.-.-+.+.+..          .-+| ++++||.|.
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----------RIkP-vlv~NK~DR  162 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----------RIKP-VLVMNKMDR  162 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----------hccc-eEEeehhhH
Confidence            57789999999999998888899999999999998765333222223333333          3444 688999995

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.45  E-value=0.00075  Score=51.00  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..+|+|.|.+||||||++++|...
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999874

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.45  E-value=0.00012  Score=50.99  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+|+|++|||||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.45  E-value=0.00013  Score=47.63  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY   33 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~   33 (184)
                      -.++++|++|+||||+++.+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            47899999999999999999875543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.44  E-value=0.00012  Score=46.02  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~   28 (184)
                      -.++++|++|||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14532 adenylate kinase; Provisional

Probab=97.44  E-value=0.00012  Score=50.98  Aligned_cols=21  Identities=19%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+++|+|||||||+.++|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999875

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.44  E-value=0.00012  Score=48.34  Aligned_cols=21  Identities=38%  Similarity=0.713  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999874

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.44  E-value=0.00017  Score=55.39  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            378999999999999999998743

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.43  E-value=0.00014  Score=48.26  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .|+|+|+.|||||||++.|.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999988743

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.43  E-value=0.00012  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14531 adenylate kinase; Provisional

Probab=97.43  E-value=0.00013  Score=50.66  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+|+++|+|||||||+.+.|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.43  E-value=0.00013  Score=47.42  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999988743

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.43  E-value=0.003  Score=42.09  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            57899999999999999998854

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.43  E-value=0.00015  Score=51.43  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+...|+|.|++|||||||++.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999998864

>TIGR00235 udk uridine kinase

Probab=97.42  E-value=0.00017  Score=51.14  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+..-|+|+|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999999763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.41  E-value=0.00013  Score=50.75  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.41  E-value=0.00011  Score=50.46  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ..-+++.|++|+||||++++|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3568999999999999999999866

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.40  E-value=0.0018  Score=52.13  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +++.|++||||||.++.|...
T Consensus        48 LlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999998864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.39  E-value=0.00014  Score=51.12  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.00082  Score=50.37  Aligned_cols=144  Identities=16%  Similarity=0.174  Sum_probs=77.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCcc-------------------cc--ccceeEEEEEEEe-----------
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTY-------------------IS--TIGIDFKQKIIDL-----------   51 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------------~~--~~~~~~~~~~~~~-----------   51 (184)
                      .++.+-|+++|-.|+||||-+-.|.........                   .+  -.+.++......-           
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            356789999999999999998877642111000                   00  0111111110000           


Q ss_pred             --CCeeEEEEEEeCCCccccc-cc------hHhhhcCCcE-----EEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCC
Q psy12922         52 --DDVPTKLQIWDTAGQERFR-TL------TTAYYRGAMG-----ILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNA  116 (184)
Q Consensus        52 --~~~~~~~~l~D~~G~~~~~-~~------~~~~~~~~d~-----~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  116 (184)
                        ....+.+.++||+|--+-. ++      ........+.     +++++|++-+ +++.+.+.+-+.+.-         
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l---------  286 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL---------  286 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC---------
Confidence              0123568999999932111 11      1122233333     7788898854 456666655444432         


Q ss_pred             CCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922        117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus       117 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                           -=+++||.|.....-    .+..++..+++|+..+-.  |++++++
T Consensus       287 -----~GiIlTKlDgtAKGG----~il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         287 -----DGIILTKLDGTAKGG----IILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             -----ceEEEEecccCCCcc----eeeeHHHHhCCCEEEEeC--CCChhhc
Confidence                 258899999643111    124456677888776643  5555554

>PRK04195 replication factor C large subunit; Provisional

Probab=97.38  E-value=0.0022  Score=51.43  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-.+++.|++|+||||+++.+...-
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999997743

>PRK00625 shikimate kinase; Provisional

Probab=97.38  E-value=0.00017  Score=49.64  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+++|.|||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.38  E-value=0.0023  Score=47.64  Aligned_cols=20  Identities=25%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q psy12922          9 KILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~   28 (184)
                      .|+|.|.+||||||+++.|.
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999984

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.37  E-value=0.00015  Score=52.75  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++++|+.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999987

>PRK02496 adk adenylate kinase; Provisional

Probab=97.37  E-value=0.00018  Score=49.93  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+|+|+|+|||||||+.+.|...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.37  E-value=0.00015  Score=50.73  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.37  E-value=0.0002  Score=51.57  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...++|+|+|+|||||||+.+.|...
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.36  E-value=0.00016  Score=50.08  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+++|+|||||||+.++|...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998763

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.36  E-value=0.00096  Score=43.74  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      --|++.|..|||||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.36  E-value=0.00019  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.++++|+.|||||||++.+..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00019  Score=50.49  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .+++|++|||||||++.|-...
T Consensus        36 TAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhc
Confidence            4899999999999999987754

>PRK08233 hypothetical protein; Provisional

Probab=97.34  E-value=0.00022  Score=49.23  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999999863

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.34  E-value=0.0002  Score=51.66  Aligned_cols=26  Identities=19%  Similarity=0.534  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...++++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999888763

This is thought to be an ATPase involved in viral DNA packaging [].

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.34  E-value=0.00017  Score=51.34  Aligned_cols=21  Identities=19%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+++|++|||||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999877

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.33  E-value=0.0002  Score=49.19  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+|+|++|||||||+|-+.+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            589999999999999998775

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.33  E-value=0.00018  Score=49.65  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -|+++|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4799999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.33  E-value=0.00021  Score=49.82  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-.++|+|++||||||+++.+.+.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3578999999999999999988743

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.32  E-value=0.0013  Score=50.12  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ..+|+|+|.+|||||||+++|...-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999988643

>KOG1970|consensus

Probab=97.31  E-value=0.0031  Score=50.33  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++.|++||||||.++.|+..
T Consensus       113 LLltGPsGcGKSTtvkvLske  133 (634)
T KOG1970|consen  113 LLLTGPSGCGKSTTVKVLSKE  133 (634)
T ss_pred             EEEeCCCCCCchhHHHHHHHh
Confidence            478899999999999998863

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.31  E-value=0.00023  Score=47.00  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988763

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=97.31  E-value=0.0013  Score=49.71  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-+|+|.|.+||||||++++|...
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~  171 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINE  171 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999864

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.30  E-value=0.00019  Score=51.36  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|.|++|||||||++.|...
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999998863

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR01351 adk adenylate kinases

Probab=97.30  E-value=0.00019  Score=50.99  Aligned_cols=21  Identities=24%  Similarity=0.552  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ||+|+|+|||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.30  E-value=0.013  Score=40.19  Aligned_cols=84  Identities=11%  Similarity=-0.030  Sum_probs=51.3

Q ss_pred             EEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922         57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA  136 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (184)
                      .+.++|+|+....  .....+..+|.++++++.+. .++.....+++.+...         ......+|+|+.+....  
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---------~~~~~~iv~N~~~~~~~--  129 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---------GIKVVGVIVNRVRPDMV--  129 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---------CCceEEEEEeCCccccc--
Confidence            4899999975432  23445678999999998764 4455555555555541         23457789999986532  


Q ss_pred             ccHHHHHHHHHhcCCCEE
Q psy12922        137 VQTKDAQMLADNYSLPFY  154 (184)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~  154 (184)
                      ........+....+.+++
T Consensus       130 ~~~~~~~~~~~~~~~~v~  147 (179)
T cd02036         130 EGGDMVEDIEEILGVPLL  147 (179)
T ss_pred             chhhHHHHHHHHhCCCEE
Confidence            122223444555566644

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG3929|consensus

Probab=97.30  E-value=0.00018  Score=51.93  Aligned_cols=152  Identities=16%  Similarity=0.203  Sum_probs=85.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchH-----hhhc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTT-----AYYR   78 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~-----~~~~   78 (184)
                      ..+..|++.|+.+  ||++|++.....-. ...++...+|......-.+ .+--.++|+.+|......+..     ..+ 
T Consensus        43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l-  118 (363)
T KOG3929|consen   43 KFEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL-  118 (363)
T ss_pred             cceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch-
Confidence            4568899999876  58888887764421 2234444444433332222 222358899998765443322     122 


Q ss_pred             CCcEEEEEEeCCChhHH-HHHHHHHHHHHHh------------------------------cccCCCCCCCCCeEEEEEe
Q psy12922         79 GAMGILLMYDVTNLESF-QHLNYWLKNIEEV------------------------------GCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~p~ivv~n  127 (184)
                      +.-.+|++.|+++++.+ -.+...+..++.+                              .-+++..++..+|+++|+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence            23567899999997642 2233322222211                              1112224466799999999


Q ss_pred             CCCCCCCccc-----cHHHHHHHHHhcCCCEEEeecCC
Q psy12922        128 KSDVKTQRAV-----QTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus       128 K~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |.|.-...+-     ....++..+...|+.....|.+.
T Consensus       199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskM  236 (363)
T KOG3929|consen  199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKM  236 (363)
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            9998653221     22235666667777666666653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.00026  Score=53.50  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-50
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-50
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-47
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-46
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-45
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-45
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-45
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-45
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-45
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-45
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-45
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-45
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-45
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-44
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-44
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-44
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		9e-44
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-43
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-43
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-43
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-42
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-42
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-40
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		5e-40
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		7e-40
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-40
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-37
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-37
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-37
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		4e-36
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-36
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-36
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		7e-36
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		7e-36
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-36
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-35
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-35
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-35
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-35
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-35
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-35
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-35
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-35
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		7e-35
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-35
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		8e-35
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-35
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		8e-35
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-34
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-34
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-34
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-34
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-34
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-33
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-33
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-33
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-33
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		8e-33
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-32
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-32
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-32
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-32
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-32
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-32
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-32
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-31
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-31
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-31
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-31
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-31
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-31
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-31
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-31
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-31
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-30
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-30
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-30
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-30
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-29
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-29
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-29
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-29
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-29
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-28
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-28
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-28
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-28
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-28
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-28
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-28
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		5e-28
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-27
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-27
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		6e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		9e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		9e-26
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-23
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-23
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-23
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		5e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		6e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		8e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		8e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-21
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-20
1byu_A	216	Canine Gdp-Ran Length = 216		1e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-20
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-20
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		7e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-20
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-19
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-19
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-19
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-19
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-19
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-19
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-18
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-18
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		6e-18
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-18
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-18
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-17
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		4e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-17
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		5e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		7e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		8e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		9e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-16
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-16
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-16
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-15
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-15
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		7e-15
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		7e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-14
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		5e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		9e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		6e-12
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		7e-12
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		7e-12
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-11
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		5e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		6e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		8e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		8e-11
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		8e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		8e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		8e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		9e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		9e-11
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		9e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-10
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-10
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-10
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-10
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-09
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-09
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-09
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-09
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-09
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-09
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-09
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-09
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-09
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		4e-09
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-09
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-09
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		5e-09
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-09
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		6e-09
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-09
1mh1_A	186	Small G-Protein Length = 186		8e-09
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-09
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-08
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-08
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-08
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-08
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-08
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-08
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-08
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-08
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-08
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-08
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-08
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-08
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-08
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-08
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		5e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		6e-08
2kb0_A	178	Cdc42(T35a) Length = 178		7e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		7e-08
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		9e-08
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		7e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-06
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-06
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		5e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		7e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-06
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		1e-05
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-05
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		5e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-05
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		6e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		2e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		3e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-04
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		4e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		5e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		7e-04

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  193 bits (491), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 132/184 (71%), Gaps = 7/184 (3%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M + +  +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQI
Sbjct: 3   MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFRT+T++YYRGA GI+++YDVT+ ES+ ++  WL+ I       ++ AS +V
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-------DRYASENV 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
            K+L GNKSD+ T++ V    A+  AD+  +PF E S K   N+++AF+T+A  I+++  
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
Query: 181 LQAI 184
           L+ +
Sbjct: 176 LEVL 179

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 129/178 (72%), Gaps = 7/178 (3%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M + +  +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQI
Sbjct: 3   MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFRT+T++YYRGA GI+++YDVT+ ES+ ++  WL+ I       ++ AS +V
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-------DRYASENV 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            K+L GNKSD+ T++ V    A+  AD+  +PF E S K   N+++AF+T+A  I+++
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR 173

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + AS +V K+L GN
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 129
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 124/177 (70%), Gaps = 7/177 (3%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRG+ GI+++YDVT+ ESF  +  WL+ I+         A+  V+K+L GN
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-------ATSTVLKLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           K D+K +R V+   A+  AD   +PF E S   + N+++AFLT+AR I+E    Q +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I       ++ AS +V K+L GN
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------DRYASENVNKLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 170

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 124/177 (70%), Gaps = 7/177 (3%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRG+ GI+++YDVT+ ESF  +  WL+ I+         A+  V+K+L GN
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-------ATSTVLKLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           K D+K +R V+   A+  AD   +PF E S   + N+++AFLT+AR I+E    Q +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + AS +V K+L GN
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 138
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 189

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I       ++ AS +V K+L GN
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------DRYASENVNKLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 170

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD    KLQIWDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRG+ GI+++YDVT+ ESF  +  WL+ I+       + A+  V+K+L GN
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID-------RYATSTVLKLLVGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+K +R V+   A+  AD   +PF E S   + N+++AFLT+AR I+E 
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 185

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + AS +V K+L GNK
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGNK 113
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 114 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 163

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 124/171 (72%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + AS +V K+L GN
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 129
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + AS +V K+L GN
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 146
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F T A  I+++
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 124/171 (72%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I       ++ AS +V K+L G 
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------DRYASENVNKLLVGI 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+++
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 172

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  173 bits (438), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 8/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQ+WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGAMGI+L+YDVT+  +F ++  W K +       N++A+ +   +L GNK
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 134
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           SD++T R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 135 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  172 bits (436), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 8/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQIWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGAMGI+L+YD+T+  +F ++  W K +       N++A+ +   +L GNK
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 117
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           SD++T R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 118 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 126/173 (72%), Gaps = 7/173 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGK+C++ RF D+TY D+YISTIG+DFK + I L++   KLQIWDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRGA GI+++YDVT+ +SF ++  W++ I+       + A  +V K+L GN
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID-------RYAMENVNKLLVGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
           K D+ ++R V + + + LAD++ + F E S K   N+++AF T+A  I+++ +
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 8/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQ+WDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGAMGI+L+YDVT+  +F ++  W K +       N++A+ +   +L GNK
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 121
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           SD++T R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 122 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 115/174 (66%), Gaps = 8/174 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
            +K++++GDS VGKTC++ RF D  +   T+IST+GIDF+ K++D+D V  KLQ+WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QERFR++T AYYR A  +LL+YDVTN  SF ++  WL  I E        A  DV  +L 
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY-------AQHDVALMLL 122
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
           GNK D   +R V+ +D + LA  Y LPF E S K  +N+D AF  +A+ ++ ++
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 8/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQIWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGA GI+L+YD+T+  +F ++  W K +       N++A+ +   +L GNK
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 117
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           SD +T R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 118 SDXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 8/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FRT+TTAYYRGA GI+L+YDVT+  +F ++  W K +       N++A+ +   +L GNK
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 117
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           SD +T R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 118 SDXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D +  +K+L++GDS VGK+ ++ RF D T+  +YI+TIG+DFK + ++++    KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRT+T+ YYRG  G++++YDVT+ ESF ++  WL  I       NQN   DV +
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-------NQNC-DDVCR 116
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           +L GNK+D   ++ V+T+DA   A    +  +E S K+N+N++E F  +  L+
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 112/171 (65%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S+VGKT  + R+ D+++   ++ST+GIDFK K +   D   KLQIWDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGAMG LLMYD+ N ESF  +  W   I+    ++ Q        +L GN
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-------VILVGN 135
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V  +D + LAD+    F+E S K+NIN+ + F  L  +I E+
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S+VGKT  + R+ D+T+   ++ST+GIDFK K +   +   KLQIWDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGAMG +LMYD+TN ESF  +  W   I+    ++ Q        +L GN
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-------VILVGN 136
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V T+  Q+LA+     F+E S K+NI++ +AF  L   I
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  159 bits (402), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 113/171 (66%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KIL++G+S+VGKT  + R+ D+++   ++ST+GIDFK K I  +D   KLQIWDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGAMG +LMYD+TN ESF  +  W   I+    ++ Q        +L GN
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-------VLLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V ++  + LAD+    F+E S K NIN+ + F  L  +I E+
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD+ VGK+C++ +F D+ +   +  TIG++F  +++++D    KLQIWDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            FR++T +YYRGA G LL+YD+T  E+F HL  WL+       ++ Q++S ++V +L GN
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE-------DARQHSSSNMVIMLIGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           KSD++++R V+ ++ +  A  + L F E S K   N++EAF+  A+ I
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 109/171 (63%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KIL++G+S+VGKT  + R+ D+++   ++ST+GIDFK K I  +D   KLQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGA G +L YD+TN ESF  +  W   I+    ++ Q        +L GN
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQ-------VLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D + +R V ++  + LAD+    F+E S K NIN+ + F  L  +I E+
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 115/171 (67%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD+ VGK+C++ +F D+ +   +  TIG++F  ++I +D    KLQIWDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            FR++T +YYRGA G LL+YD+T  ++F HL  WL+       ++ Q+++ ++V +L GN
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE-------DARQHSNSNMVIMLIGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD++++R V+ ++ +  A  + L F E S K   N++EAF+  A+ I E+
Sbjct: 124 KSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 10/178 (5%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++ +KI+V+GDSNVGKTC+ +RFC   + D   +TIG+DF+++ +D+D    K+Q+WDTA
Sbjct: 18  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 77
Query: 65  GQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
           GQERFR ++   YYR    ++ +YD+TN+ SF  L  W   IEE  C  +  A+ D+ ++
Sbjct: 78  GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW---IEE--CKQHLLAN-DIPRI 131
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NINIDEAFLTLARLIREQ 178
           L GNK D+++   V T  AQ  AD +S+P +E S K    N +++  F+TLA  ++  
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  146 bits (368), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ++F     W+K ++       + ASP++V  LAGN
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-------RQASPNIVIALAGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+ ++RAV+ ++AQ  AD+ SL F E S K  +N++E F+ +A+
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 162

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  146 bits (368), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 120
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 166

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD  VGK+C++H+F ++ +      TIG++F  +II++     KLQIWDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR +T +YYRGA G L++YD+T   ++ HL+ WL +   +        +P+ V +L GN
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-------TNPNTVIILIGN 128
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K+D++ QR V  ++A+  A+   L F E S K   N+++AFL  A+ I
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 120
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K + N++E F  +A+
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAK 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 8/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD++VGKTC+V RF    + +   STIG+DF  K +++     KLQIWDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T +YYR A G +L YD+T   SF  + +W++++        + A  ++V++L GN
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV-------RKYAGSNIVQLLIGN 142
Query: 128 KSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLA 172
           KSD+   R V   +AQ LA++Y  L   E S K + N++EAFL +A
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ++F     W+K ++       + ASP++V  LAGN
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-------RQASPNIVIALAGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+ ++RAV+ ++AQ  AD+ SL F E S K  +N++E F+ +A+
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 117/187 (62%), Gaps = 18/187 (9%)
Query: 1   MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQK-IIDLDDVP-- 55
           M+D +  Y  K L LGDS VGKT +++++ D  +   +I+T+GIDF++K ++   + P  
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 56  -------TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
                    LQ+WDTAG ERFR+LTTA++R AMG LL++D+TN +SF ++  W+  ++  
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 109 GCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
             + N    PD+  VL GNKSD++ QRAV+ ++A+ LA+ Y +P++E S     NI  A 
Sbjct: 123 AYSEN----PDI--VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAI 176
Query: 169 LTLARLI 175
             L  LI
Sbjct: 177 EMLLDLI 183

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  142 bits (359), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STI   F  + + LDD   K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ++F     W+K ++       + ASP++V  LAGN
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-------RQASPNIVIALAGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+ ++RAV+ ++AQ  AD+ SL F E S K  +N++E F+ +A+
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  142 bits (359), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN E+F     W+K ++       + ASP +V  LAGN
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ-------RQASPSIVIALAGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +R V+ ++AQ  AD+ SL F E S K  +N+++ FL +A+
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 167

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  142 bits (359), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K LV+G +  GK+C++H+F +  +      TIG++F  +++++     KLQIWDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ E++  L  WL +   +       ASP++V +L GN
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL-------ASPNIVVILCGN 138
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+  +R V   +A   A    L F E S     N++EAFL  AR I
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  142 bits (359), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 107/166 (64%), Gaps = 7/166 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+GN
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+
Sbjct: 119 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 164

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  142 bits (359), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD  VGK+C++H+F ++ +      TIG++F  +II++     KLQIWDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR +T +YYRGA G L++YD+T   ++ HL+ WL +   +        +P+ V +L GN
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-------TNPNTVIILIGN 143
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K+D++ QR V  ++A+  A+   L F E S K   N+++AFL  A+ I
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 95/124 (76%), Gaps = 7/124 (5%)
Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           +L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    KLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 70  RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129
           RT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + AS +V K+L GNK 
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGNKC 113
Query: 130 DVKT 133
           D+ T
Sbjct: 114 DLTT 117

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 10/178 (5%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++ +KI+V+GDSNVGKTC+ +RFC   + D   +TIG+DF+++ +D+D    K+Q+WDTA
Sbjct: 27  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 65  GQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
           GQERFR ++   YYR    ++ +YD TN  SF  L  W   IEE  C  +  A+ D+ ++
Sbjct: 87  GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAW---IEE--CKQHLLAN-DIPRI 140
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NINIDEAFLTLARLIREQ 178
           L GNK D+++   V T  AQ  AD +S P +E S K    N +++  F TLA  ++  
Sbjct: 141 LVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 16/184 (8%)
Query: 2   ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------- 53
            D +   K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +  +         
Sbjct: 20  GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79
Query: 54  --VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCN 111
                 LQ+WDTAGQERFR+LTTA++R AMG LLM+D+T+ +SF ++  W+  ++     
Sbjct: 80  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
            N    PD+  VL GNK+D+  QR V  + A+ LAD Y +P++E S     N+++A  TL
Sbjct: 140 EN----PDI--VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193
Query: 172 ARLI 175
             LI
Sbjct: 194 LDLI 197

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 8/178 (4%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M D +  +KI+++G++ VGKTC+V RF    +     +TIG+DF  K ++++    KLQI
Sbjct: 20  MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR++T +YYR A  ++L YD+T  ESF+ L  WL+ IE       Q AS  V
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE-------QYASNKV 132
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA-RLIRE 177
           + VL GNK D+  +R V  + A+  ++   + + E S K++ N+++ FL LA RLI E
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K LV+G++  GK+C++H+F ++ + D    TIG++F  KII++     KLQIWDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ E++  L  WL        ++   AS ++V +L GN
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWL-------TDARMLASQNIVIILCGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+   R V   +A   A    L F E S     N++EAF+  AR I
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 18/187 (9%)
Query: 1   MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----- 53
           M D +  Y  K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +  D      
Sbjct: 3   MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 54  -----VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
                    LQ+WDTAG ERFR+LTTA++R AMG LLM+D+T+ +SF ++  W+  ++  
Sbjct: 63  ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 109 GCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
               N    PD+  VL GNK+D+  QR V  + A+ LA+ Y +P++E S     N++++ 
Sbjct: 123 AYCEN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSV 176
Query: 169 LTLARLI 175
            TL  LI
Sbjct: 177 ETLLDLI 183

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 18/187 (9%)
Query: 1   MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----- 53
           M D +  Y  K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +  D      
Sbjct: 3   MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 54  -----VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
                    LQ+WDTAG ERFR+LTTA++R AMG LLM+D+T+ +SF ++  W+  ++  
Sbjct: 63  ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 109 GCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
               N    PD+  VL GNK+D+  QR V  + A+ LA+ Y +P++E S     N++++ 
Sbjct: 123 AYCEN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSV 176
Query: 169 LTLARLI 175
            TL  LI
Sbjct: 177 ETLLDLI 183

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K LV+G++  GK+C++H+F ++ + D    TIG++F  KII++     KLQIWDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ E++  L  WL +   +       AS ++V +L GN
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML-------ASQNIVIILCGN 124
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+   R V   +A   A    L F E S     +++EAF+  AR I
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 8/164 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +++++G   VGKT ++ RF D+T+ +   ST+G+DFK K ++L     +LQIWDTAGQER
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F ++T+AYYR A GI+L+YD+T  E+F  L  W+K I       ++ AS D   +L GNK
Sbjct: 88  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-------DKYASEDAELLLVGNK 140
Query: 129 SDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTL 171
            D +T R +  +  +  A   + + F E S K N N+DE FL L
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 7/175 (4%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M D N  +K++++G+S VGKT ++ RF    +     +TIG++F  + + L     K QI
Sbjct: 4   MEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 63
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAG ER+R +T+AYYRGA+G LL++D+T  +++  +  WLK + +       +A   +
Sbjct: 64  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD-------HAEATI 116
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           V +L GNKSD+   R V T++A+M A+N  L F E S   + N++ AF T+ + I
Sbjct: 117 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 104/161 (64%), Gaps = 7/161 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
           KSD++  RAV T +A+  A+  +L F E S   + N++EAF
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 133
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD++  RAV T +A+  A+   L F E S   + N++ AF T+
Sbjct: 134 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 7/168 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K LV+G++  GK+C++H+F ++ + D    TIG++F  KII++     KLQIWDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ E++  L  WL        ++   AS ++V +L GN
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWL-------TDARMLASQNIVIILCGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+   R V   +A   A    L F E S     +++EAF+  AR I
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   T KIL++G+S VGK+ ++ RF D+T+     +TIG+DFK K I +D    KL IWD
Sbjct: 11  DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70
Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLT +YYRGA G++L+YDVT  ++F  L+ WL  +E   C  N     D+V 
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRN-----DIVN 124
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            L GNK D K  R V   +    A  +S  F E S K    +  AF  L   I
Sbjct: 125 XLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 142
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD++  RAV T +A+  A+   L F E S   + N++ AF T+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI+++GDS VGK+ ++ RF    +     STIG++F  + ++++    K QIWDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G L++YD++   S+++ N+WL  + E       NA  +V   L GN
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE-------NADDNVAVGLIGN 126
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+   RAV T++++  A    L F E S   + N+D+AF  L   I ++
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D N  +K++++G+S VGKT ++ RF    +     +TIG++F  + + L     K QIWD
Sbjct: 21  DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80
Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAG ER+R +T+AYYRGA+G LL++D+T  +++  +  WLK + +       +A   +V 
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD-------HAEATIVV 133
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           +L GNKSD+   R V T++A+M A+N  L F E S   + N++ AF T+ + I
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQ 66
           +KI+++GDS VGK+ ++ RF  + +     STIG++F  K I L ++   K QIWDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ER+R +T+AYYRGA+G LL+YD+T   SF+++  WLK + +       NA  ++V +L G
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD-------NADSNIVILLVG 120
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           NKSD+K  R +   DA   A    L F E S  +  N++ AF  L
Sbjct: 121 NKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDF--KQKIIDLDDVPTKLQIWDTAGQ 66
           K+++LGDS VGKT ++HR+ ++ Y   Y +TIG DF  K+  +D D V T +Q+WDTAGQ
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAGQ 68
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF++L  A+YRGA   +L+YDVTN  SF+++  W    +E   ++N N+      V+ G
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWR---DEFLVHANVNSPETFPFVILG 125
Query: 127 NKSDV-KTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLARLIREQTR 180
           NK D  ++++ V  K AQ LA +   +P +  S K  IN+D AF  +AR   +Q +
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 16/187 (8%)
Query: 2   ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------- 53
            D +   K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +  D         
Sbjct: 6   GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 54  --VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCN 111
                 LQ+WDTAG ERFR+LTTA++R A G LL +D+T+ +SF ++  W   ++     
Sbjct: 66  KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
            N    PD+  VL GNK+D+  QR V  + A+ LA+ Y +P++E S     N++++  TL
Sbjct: 126 EN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 172 ARLIREQ 178
             LI ++
Sbjct: 180 LDLIXKR 186

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD++  RAV T +A+  A+   L F E S   + N++ AF T+
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 142
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD++  RAV T +A+  A+   L F E S   + N++ AF T+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 16/187 (8%)
Query: 2   ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------- 53
            D +   K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +  D         
Sbjct: 6   GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 54  --VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCN 111
                 LQ+WDTAG ERFR+LTTA++R A G LL +D+T+ +SF ++  W   ++     
Sbjct: 66  KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
            N    PD+  VL GNK+D+  QR V  + A+ LA+ Y +P++E S     N++++  TL
Sbjct: 126 EN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 172 ARLIREQ 178
             LI ++
Sbjct: 180 LDLIXKR 186

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 7/169 (4%)
Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D +  +KI+++GDS VGK+ ++ RF  + +     STIG++F  + I++++   K QIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAG ER+R +T+AYYRGA+G L++YD++   S+++ N+WL  + E       NA  +V  
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE-------NADDNVAV 118
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
            L GNKSD+   RAV T +A+  A    + F E S   + N+D+AF  L
Sbjct: 119 GLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V  L GN
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIXLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD++  RAV T +A+  A+   L F E S   + N++ AF T+
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V  L GN
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIXLVGN 124
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
           KSD++  RAV T +A+  A+   L F E S   + N++ AF T+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGD   GK+ +V RF  + + +   STIG  F  + + ++D   K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           + +L   YYRGA   ++++DVTN  SF+    W++ ++  G       +P++V  LAGNK
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-------NPNMVMALAGNK 126
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           SD+   R V  +DAQ  A    L F E S K   N+ E F  +AR
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+ +LGD+ VGK+ IV RF ++++      TIG  F  K +   +   K  IWDTAGQER
Sbjct: 7   KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FR L   YYRG+   +++YD+T  E+F  L  W++ +        Q+  P +V  +AGNK
Sbjct: 67  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-------QHGPPSIVVAIAGNK 119
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            D+   R V  +DA+  AD+    F E S K  INI+E F+ ++R I
Sbjct: 120 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 13/180 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + YKI++ GD+ VGK+  + R C   + +   +T+G+DF+ K + +D   T LQ+WDTAG
Sbjct: 27  KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QERFR++  +Y+R A G+LL+YDVT  +SF ++  W+  IE+        A   V  +L 
Sbjct: 87  QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-------AHETVPIMLV 139
Query: 126 GNKSDVK------TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
           GNK+D++       Q+ V     + LA  Y   F E S K   NI EA L LAR ++++T
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++ LG+  VGKT I+ RF  +T+ + Y STIGIDF  K + LD+ P +LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNI-EEVGCNSNQNASPDVVKVLAG 126
           RFR+L  +Y R +   +++YD+TN +SF++   W+++I  E G         DV+  L G
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--------KDVIIALVG 113
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
           NK+D+   R V  ++    A  Y+  F+E S K   NI   F
Sbjct: 114 NKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 7/170 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L  +Y R +   +++YD+TNL SFQ  + W+ ++             DV+ +L GN
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-------RTERGSDVIIMLVGN 115
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K+D+  +R +  ++ +  A   S+ F E S K   N+ + F  +A  + E
Sbjct: 116 KTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 9/168 (5%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE-EVGCNSNQNASPDVVKVL 124
           QERFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++  E G         DV+ +L
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--------DVIIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
            GNK+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+ +LGD+ VGK+ I+ RF ++++      TIG  F  K +   +   K  IWDTAG ER
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           FR L   YYRG+   +++YD+T  E+F  L  W++ +        Q+  P +V  +AGNK
Sbjct: 68  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-------QHGPPSIVVAIAGNK 120
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            D+   R V  +DA+  AD+    F E S K  INI+E F+ ++R I
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++             DV+ +L GN
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR-------TERGSDVIIMLVGN 114
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           K+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A
Sbjct: 115 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           ++K+++LG+  VGKT +V R+C+  + D +I+T+G  F  K +++      L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF  L   YYR + G +L+YD+T+ +SFQ +  W+K + ++  N       ++   + G
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-------EICLCIVG 118
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           NK D++ +R V  ++A+  A++     Y  S KQN  I+E FL L + + E
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 9/168 (5%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE-EVGCNSNQNASPDVVKVL 124
           QERFR+L  +Y R +   +++YD+TN  SF   + W+ ++  E G         DV+ +L
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--------DVIIML 124
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
            GNK+D+  +R V T++ +  A   ++ F E S K   N+ + F  +A
Sbjct: 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    +QIWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F++L  A+YRGA   +L++DVT   +F+ L+ W    +E    ++     +   V+ GNK
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
            D++  R V TK AQ       ++P++E S K+ IN+++AF T+AR  ++++T ++
Sbjct: 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    +QIWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F++L  A+YRGA   +L++DVT   +F+ L+ W    +E    ++     +   V+ GNK
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
            D++  R V TK AQ       ++P++E S K+ IN+++AF T+AR  ++++T ++
Sbjct: 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
            ERFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++             DV+ +L 
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-------RTERGSDVIIMLV 124
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           GNK+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    +QIWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F++L  A+YRGA   +L++DVT   +F+ L+ W    +E    ++     +   V+ GNK
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
            D +  R V TK AQ       ++P++E S K+ IN+++AF T+AR  ++++T ++
Sbjct: 127 IDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 102/168 (60%), Gaps = 9/168 (5%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE-EVGCNSNQNASPDVVKVL 124
            ERFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++  E G         DV+ +L
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS--------DVIIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
            GNK+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           ++K+++LG+  VGKT +V R+C+  + D +I+T+   F  K +++      L IWDTAGQ
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF  L   YYR + G +L+YD+T+ +SFQ +  W+K + ++  N       ++   + G
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-------EICLCIVG 132
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           NK D++ +R V  ++A+  A++     Y  S KQN  I+E FL L + + E
Sbjct: 133 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           ++K+++LG+  VGKT +V R+C+  + D +I+T+   F  K +++      L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF  L   YYR + G +L+YD+T+ +SFQ +  W+K + ++  N       ++   + G
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-------EICLCIVG 118
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           NK D++ +R V  ++A+  A++     Y  S KQN  I+E FL L + + E
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
            ERFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++             DV+ +L 
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-------RTERGSDVIIMLV 127
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           GNK+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    +QIWDTAG ER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F++L  A+YRGA   +L++DVT   +F+ L+ W    +E    ++     +   V+ GNK
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
            D++  R V TK AQ       ++P++E S K+ IN+++AF T+AR  ++++T ++
Sbjct: 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 10/165 (6%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++V+G+  VGK+ ++ R+C   +   Y  TIG+DF ++ I ++D   +L +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWL-KNIEEVGCNSNQNASPDVVKVLAGN 127
           F  +T AYYRGA   +L++  T+ ESF+ ++ W  K + EVG         D+   L  N
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---------DIPTALVQN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
           K D+     ++ ++A+ LA    L FY  S K+++N+ E F  LA
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+ +LGD+ VGK+ IV RF  + +      TIG  F  K +   +   K  IWDTAGQER
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F +L   YYRG+   +++YD+T  +SF  L  W+K ++E G         ++V  +AGNK
Sbjct: 85  FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE-------NIVMAIAGNK 137
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            D+   R V  KDA+  A++      E S K  INI+E F  ++R I
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 10/172 (5%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           + K+++LG++ VGK+ IV RF    + +    TIG  F  + + +++   K +IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF +L   YYR A   L++YDVT  +SF    +W+K + E        AS D++  L G
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-------QASKDIIIALVG 115
Query: 127 NKSDV---KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           NK D      +R V  ++ + LA+   L F+E S K   N+++ FL +   I
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI++LGD  VGK+ +++R+    +      TIG++F  K +++D     +QIWDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L T +YRG+   LL + V + +SFQ+L+ W K            + P V+    GN
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI---LGN 128
Query: 128 KSDVKTQRAVQTKDAQML-ADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K+D+K +R V T++AQ    DN   P++E S K + N+  AF    R I
Sbjct: 129 KTDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           MA  +  +K+++LGD  VGK+ +++R+    +      TIG++F  K +++D     +QI
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR+L T +YRG+   LL + V + +SFQ+L+ W K            + P V
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           +    GNK D+ ++R V T++AQ    DN   P++E S K   N+  AF    R +
Sbjct: 121 I---LGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           MA  +  +K+++LGD  VGK+ +++R+    +      TIG++F  K +++D     +QI
Sbjct: 3   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR+L T +YRG+   LL + V + +SFQ+L+ W K            + P V
Sbjct: 63  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 122
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           +    GNK D+ ++R V T++AQ    DN   P++E S K   N+  AF    R +
Sbjct: 123 I---LGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++++ + I+ V        S DV  VL GN
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+ + R V TK AQ LA +Y +PF E S K    +D+AF TL R IR+ 
Sbjct: 118 KSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++++ + I+ V        S DV  VL GN
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ + R V TK AQ LA +Y +PF E S K    +D+AF TL R IR+ 
Sbjct: 118 KCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LGD  VGK+ +++R+    +      TIG++F  + +++D     LQIWDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F++L T +YRGA   LL + V + +SF++L  W K         +    P VV    GNK
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV---LGNK 125
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            D K  R V T++AQ    +N   P+ E S K + N+  AF    R +
Sbjct: 126 VD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 127
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 128 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL GN
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 115
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 116 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y+ T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y+ T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           ++  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R         Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL GN
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 127
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 128 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++ +DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL GN
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 124
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 125 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++++ + I+ V        S DV  VL GN
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+ + R V TK AQ LA +Y +PF E S K    +D+AF TL R IR+ 
Sbjct: 118 KSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++++ + I+ V        S DV  VL GN
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+ + R V TK AQ LA +Y +PF E S K    +D+AF TL R IR+ 
Sbjct: 118 KSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL GN
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K   +     +L +Y++S K N N ++ FL LAR
Sbjct: 119 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 162

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           K D+K  R V+ K + +     +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG-IDFKQKIIDLDDVPTKLQIWDTAG 65
           TYKI ++GD  VGKT  ++R  D  +   Y +T+G ++     +D      K  +WDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE+   L   YY GA G +L +DVT+  + Q+L  W+K  + V  N     +P VV    
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE----APIVV---C 123
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            NK D+K ++ +  K    +    +  ++E+S K   N    FL LAR+ 
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 63
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V  + N      V  +L GN
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  AD +++ + E S K   N+D+ F  L R IR
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           T+K++++GD   GKT  V R     +   YI+TIG++        +    K  +WDTAG 
Sbjct: 12  TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E+F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL G
Sbjct: 72  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV-CE-------NIPIVLCG 123
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           NK DVK +R V+ K         +L +Y++S K N N ++ FL LAR +    +L+ +
Sbjct: 124 NKVDVK-ERKVKAKTI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 179

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           T+K++++GD   GKT  V R     +   YI+TIG++        +    K  +WDTAG 
Sbjct: 5   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E+F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL G
Sbjct: 65  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV-CE-------NIPIVLCG 116
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           NK DVK +R V+ K         +L +Y++S K N N ++ FL LAR +    +L+ +
Sbjct: 117 NKVDVK-ERKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           T+K++++GD   GKT  V R     +   YI+TIG++        +    K  +WDTAG 
Sbjct: 4   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E+F  L   YY  A   ++M+DVT+  +++++  W +++  V C        ++  VL G
Sbjct: 64  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV-CE-------NIPIVLCG 115
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           NK DVK +R V+ K         +L +Y++S K N N ++ FL LAR +    +L+ +
Sbjct: 116 NKVDVK-ERKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 7/173 (4%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++T+K++V+G   VGK+ +  +F    +   Y  TI  D   KI  +D +P +L I DTA
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTA 65
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE F  +   Y R   G LL++ + + +SF  +      I  V          D   VL
Sbjct: 66  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD------DFPVVL 119
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
            GNK+D+++QR V   +A     ++ + ++E S K  +N+DEAF  L R +R+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAGQE
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 77
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V  + N      V  +L GN
Sbjct: 78  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 131
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  A+ +++ + E S K   N+D+ F  L R IR
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAGQE
Sbjct: 7   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V  + N      V  +L GN
Sbjct: 66  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  A+ +++ + E S K   N+D+ F  L R IR
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAGQE
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 73
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V  + N      V  +L GN
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 127
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  A+ +++ + E S K   N+D+ F  L R IR
Sbjct: 128 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 176

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 80
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++++ + I+ V        S DV  VL GN
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+ + R V TK AQ LA +Y +PF E S K    +D+AF TL R IR+ 
Sbjct: 135 KCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 184

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 80
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF  +N + + I+ V        S DV  VL GN
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV------KDSDDVPMVLVGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           K D+ T R V TK A  LA +Y +PF E S K    +++AF TL R IR Q R++ +
Sbjct: 135 KCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR-QYRMKKL 189

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAG E
Sbjct: 8   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLE 66
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G LL++ +T  ESF     + + I  V    ++     +  ++ GN
Sbjct: 67  DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK-----IPLLVVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  A+ + + + E S K   N+D+ F  L R IR
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 170

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAG E
Sbjct: 7   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLE 65
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V  + N      V  +L GN
Sbjct: 66  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  A+ +++ + E S K   N+D+ F  L R IR
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 168

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    +++K++ LD    ++ I DTAG E
Sbjct: 4   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G LL++ +T  ESF     + + I  V    ++     +  ++ GN
Sbjct: 63  DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK-----IPLLVVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           KSD++ +R V  ++A+  A+ + + + E S K   N+D+ F  L R IR
Sbjct: 118 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 166

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQE 67
           KI+VLGD   GKT +   F  ET+   Y  TIG+DF  + I L  ++   LQIWD  GQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
               +   Y  GA G+LL+YD+TN +SF++L  W   +++V   S ++ +  +V  L GN
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV---SEESETQPLV-ALVGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K D++  R ++ +             + VS K     D  FL   ++  E
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG---DSVFLCFQKVAAE 170

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 28  CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87
           CD T  D+Y   + ID +  ++D         I DTAGQE +  +   Y R   G L ++
Sbjct: 32  CDPTIEDSYRKQVVIDGETCLLD---------ILDTAGQEEYSAMRDQYMRTGEGFLCVF 82
Query: 88  DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD 147
            + N +SF+ ++ + + I+ V        S DV  VL GNKSD+   R V+++ AQ LA 
Sbjct: 83  AINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGNKSDLAA-RTVESRQAQDLAR 135
Query: 148 NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y++ V G   VGK+ +V RF   T+ ++YI T+   ++Q +I  D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +           +L+Y +T+ +S + L    + I E+     +     +  +L GN
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI-----KGDVESIPIMLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
           K D    R VQ+ +A+ LA  +   F E S K N N+ E F  L  L + +T
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 69
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 124 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 122 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 122 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + D Y  TI  D  +K +++D     L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G  L+Y +T   +F  L    + I  V        + DV  +L GN
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V  +  Q LA  + +  F E S K  IN++E F  L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK  +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++LG   VGKT + H+F +  + + Y  T+   +  KI+ L      L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L  ++  G  G +L+Y VT+L SFQ +    + + E       +    V  VL GNK
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHE------GHGKTRVPVVLVGNK 138
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
           +D+  +R VQ  + + LA+++   F E S ++N  + +   T  ++I+E  R++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSAREN-QLTQGIFT--KVIQEIARVE 189

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           + D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 RCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  +I   ++++++ +D     L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 68
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 123 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  +I   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D +  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + + Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R  R+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
               +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 7/173 (4%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            + Y+++V+G   VGK+ +  +F    +   Y  TI   + ++ + +DD   +L I DTA
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTA 61
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE F  +   Y R   G LL++ VT+  SF+ +  + + I  V    +++  P    +L
Sbjct: 62  GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRV---KDRDEFP---MIL 115
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
            GNK+D+  QR V  ++ Q LA    + + E S K  +N+D+AF  L R+IR+
Sbjct: 116 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KXDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + + Y  TI  D  +K +++D     L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G  L+Y +T   +F  L    + I  V        + DV  +L GN
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTDDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V  +  Q LA  + +  F E S K  IN++E F  L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KXDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + + Y  TI  D  +K +++D     L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G  L+Y +T   +F  L    + I  V        + DV  +L GN
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V  +  Q LA  + +  F E S K  IN++E F  L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + + Y  TI  D  +K +++D     L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G  L+Y +T   +F  L    + I  V        + DV  +L GN
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTDDVPMILVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
           K D++ +R V  +  Q LA  + +  F E S K  IN++E F  L R I
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 67
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 122 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI   ++++++ +D     L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIE 62
Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M + +  Y+++V G   VGK+ +V RF   T+ DTYI TI   ++Q +I  D     LQI
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQI 60
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
            DT G  +F  +           +L++ VT+ +S + L    K I ++     + +  D+
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI-----KGSVEDI 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
             +L GNK D +TQR V T++AQ +A  +   F E S K N N+ E F  L  L
Sbjct: 116 PVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTL 168

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           TYK++V+GD  VGK+ +  +F  + + D Y  TI  D  +K  ++D+    L + DTAGQ
Sbjct: 18  TYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDVLDTAGQ 76
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +   Y R   G L++Y VT+  SF+H++ + + I  V    ++ + P    +L  
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 130
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
           NK D+   R V     + +A  Y++P+ E S K   +N+D+ F  L R+IR+Q
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+ + G + VGK+ +V RF  + +   Y  T+   ++ +   +DD    ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNI-EEVGCNSNQNASPDVVKVLAGN 127
                  + R   G +L+YD+T+  SF+ +   LKNI +E+    N      V  +L GN
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKN------VTLILVGN 140
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVS-CKQNINIDEAFLTLARLIREQTRLQ 182
           K+D+   R V T++ + LA   +  FYE S C    NI E F  L R +R +  +Q
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           TYK++V+GD  VGK+ +  +F  + + D Y  TI  D   K  ++D+    L + DTAGQ
Sbjct: 18  TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +   Y R   G L++Y VT+  SF+H++ + + I  V    ++ + P    +L  
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 130
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
           NK D+   R V     + +A  Y++P+ E S K   +N+D+ F  L R+IR+Q
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 20  KTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG 79
           K+ +  +F   T+ + Y  TI  DF +K I++D  P+ L+I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 80  AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT 139
             G +L+Y + N +SFQ +      I  V           V  +L GNK D++++R V +
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGNKVDLESEREVSS 128
Query: 140 KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
            + + LA+ +  PF E S K    +DE F  + R
Sbjct: 129 SEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 47/206 (22%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT---------- 56
           +YK ++LG+S+VGK+ IV R   +T+++   +TIG  F   +++L+D+            
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 57  ---------------------------KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV 89
                                      K  IWDTAGQER+ ++   YYRGA   ++++D+
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 90  TNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY 149
           +N  +      W+  ++          S + + +L  NK D K +  V   + Q  A + 
Sbjct: 127 SNSNTLDRAKTWVNQLK---------ISSNYIIILVANKID-KNKFQVDILEVQKYAQDN 176
Query: 150 SLPFYEVSCKQNINIDEAFLTLARLI 175
           +L F + S K   NI   F  LA  I
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAEEI 202

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           TYK++V+GD  VGK+ +  +F  + +   Y  TI  D   K  ++D+    L + DTAGQ
Sbjct: 18  TYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +   Y R   G L++Y VT+  SF+H++ + + I  V    ++ + P    +L  
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 130
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
           NK D+   R V     + +A  Y++P+ E S K   +N+D+ F  L R+IR+Q
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           TYK++V+GD  VGK+ +  +F  + +   Y  TI  D   K  ++D+    L + DTAGQ
Sbjct: 13  TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 71
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +   Y R   G L++Y VT+  SF+H++ + + I  V    ++ + P    +L  
Sbjct: 72  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 125
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
           NK D+   R V     + +A  Y++P+ E S K   +N+D+ F  L R+IR+Q
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +++ KI +LG  +VGK+ +  +F +  + D+Y  TI   F  K+I ++     LQ+ DTA
Sbjct: 4   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ+ +      Y     G +L+Y VT+++SF+     +K I   G   +      +  +L
Sbjct: 63  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFE----VIKVIH--GKLLDMVGKVQIPIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
            GNK D+  +R +  ++ + LA++++  F E S K+N    + F    R+I E  +L+
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF---RRIILEAEKLE 171

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 12/178 (6%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +++ KI +LG  +VGK+ +  +F +  + D+Y  TI   F  K+I ++     LQ+ DTA
Sbjct: 4   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWL-KNIEEVGCNSNQNASPDVVKV 123
           GQ+ +      Y     G +L+Y VT+++SF+ +     K ++ VG          +  +
Sbjct: 63  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-------KVQIPIM 115
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRL 181
           L GNK D+  +R +  ++ + LA++++  F E S K+N    + F    R+I E  ++
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF---RRIILEAEKM 170

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 10/173 (5%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI +LG  +VGK+ +  +F +  + D+Y  TI   F  K+I ++     LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +      Y     G +L+Y VT+++SF+     +K I   G   +      +  +L GNK
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFE----VIKVIH--GKLLDMVGKVQIPIMLVGNK 115
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRL 181
            D+  +R +  ++ + LA++++  F E S K+N    + F    R+I E  ++
Sbjct: 116 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF---RRIILEAEKI 165

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 9   KILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDD--VPTKLQIWDTA 64
           K+ V+G++ VGK+ ++  F  +   +   Y  T G++     + + D  V  +L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD----V 120
           G + ++   + Y+ G    +L++DV+++ESF+    W + +        ++A PD    +
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL--------KSARPDRERPL 133
Query: 121 VKVLAGNKSDVKTQR-AVQTKDAQMLADNYSLPFYEVSC-KQNINIDEAFLTLA 172
             VL  NK+D+  QR  V+   AQ  A   +L F++VS      + D  FL++A
Sbjct: 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++V+GD   GKTC++  F  + + + Y+ T+  ++   I ++D    +L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 85
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L    Y     IL+ + V + +S       L+NI E      ++  P+V  +L  NK
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDS-------LENIPEKWVPEVKHFCPNVPIILVANK 138
Query: 129 SDVKTQRAVQTKDAQM 144
            D+++   V+T+ A+M
Sbjct: 139 KDLRSDEHVRTELARM 154

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 7/157 (4%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +++ KI +LG  +VGK+ +  +F +  + D+   TI   F  K+I ++     LQ+ DTA
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTA 60
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ+ +      Y     G +L+Y VT+++SF+     +K I   G   +      +  +L
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFE----VIKVIH--GKLLDMVGKVQIPIML 114
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161
            GNK D+  +R +  ++ + LA++++  F E S K+N
Sbjct: 115 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 151

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWDT 63
           ++ K++++GD   GKT ++  F D  + ++Y  T+   F++ +++L     P  L IWDT
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDT 89
Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEE---------VGCNSN 113
           AGQ+ +  L   +Y  A  +LL +DVT+  SF ++ N W   +           VGC ++
Sbjct: 90  AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTD 149
Query: 114 QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
                 +V  L  N  +  T    Q    +M     ++ + E S + + N+   F   A 
Sbjct: 150 LRKDKSLVNKLRRNGLEPVTYHRGQ----EMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
Query: 174 L 174
           +
Sbjct: 206 V 206

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  I  I++D    +L +WDTAGQ
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFXPNVPIILVG 136
Query: 127 NKSDVK------------TQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V++++ + +A+  S   + E S K    + E F    R
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  I  I++D    +L +WDTAGQ
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 136
Query: 127 NKSDVK------------TQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V++++ + +A+  S   + E S K    + E F    R
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 17/141 (12%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K + +GD  VGKTC++  +   T+   Y+ T+  +F   ++ +D     L +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    YRGA   LL + + +  S+++++  WL  +        ++ +P +  VL G 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL--------KHYAPGIPIVLVGT 118
Query: 128 KSDVKTQRAVQTKDAQMLADN 148
           K D++        D Q L D+
Sbjct: 119 KLDLR-------DDKQFLKDH 132

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K + +GD  VGKTC++  +   T+   Y+ T+  +F   ++ ++     L +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    YRGA   +L + + +  S+++++  W+  +        ++ +P V  VL G 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--------KHYAPGVPIVLVGT 120
Query: 128 KSDVKTQR----------AVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLARLI 175
           K D++  +           + T   + L      P Y E S K   N+   F    R++
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +++GD  VGKT +V  +    Y   YI T   +F   ++ +D  P +LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F  L    Y      LL + V +  SFQ+++   K + E+ C+      P    +L G +
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSE--KWVPEIRCH-----CPKAPIILVGTQ 133
Query: 129 SDVK------------TQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAF 168
           SD++             ++ V  + A++LA+      Y E S     N+ E F
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 118
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 174 LIREQTR 180
              +  R
Sbjct: 179 AALQARR 185

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 66
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 119
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 174 LIREQTR 180
              +  R
Sbjct: 180 AALQARR 186

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 67
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 68  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 120
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 121 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 174 LIREQTR 180
              +  R
Sbjct: 177 AALQARR 183

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 64
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 117
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 118 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 118
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 174 LIREQTR 180
              +  R
Sbjct: 179 AALQARR 185

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++  F  + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 118
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K + +GD  VGKTC++  +    +   YI T+  +F   +  +D     L +WDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGQIVNLGLWDTAGQED 69
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    YRGA   +L + + +  S+++ L  W+  +           +P+V  VL G 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--------APNVPIVLVGT 121
Query: 128 KSDVKTQRA---------VQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++  +            T+  ++     +  + E S K   N+   F T  +++ + 
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
Query: 179 TRLQAI 184
            R + +
Sbjct: 182 PRRKEV 187

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K + +GD  VGKTC++  +   T+   Y+ T+  +F   ++ +D     L +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    YRGA   +L + + +  S++++   W+  +        ++ +P V  +L G 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL--------RHYAPGVPIILVGT 118
Query: 128 KSDVKTQR----------AVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAF 168
           K D++  +           + T   + L      P Y E S K   N+   F
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKTC++  F  + + + Y+ T+  ++   I ++D    +L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 66
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L GNK
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 129 SDVKTQRAVQTKDAQM 144
            D++     + + A+M
Sbjct: 120 KDLRNDEHTRRELAKM 135

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  I  I++D    +L +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 63
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVK------------TQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V++++ + +A+  S   + E S K    + E F    R
Sbjct: 117 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N   KI+V+GDS  GKT ++H F  + + + Y+ T+  ++     ++D    +L +WDT+
Sbjct: 21  NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTS 79
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
           G   +  +    Y  +  +L+ +D++  E+    L  W   I+E          P+   +
Sbjct: 80  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKML 131
Query: 124 LAGNKSDVKT 133
           L G KSD++T
Sbjct: 132 LVGCKSDLRT 141

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N   KI+V+GDS  GKT ++H F  + + + Y+ T+  ++     ++D    +L +WDT+
Sbjct: 5   NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTS 63
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
           G   +  +    Y  +  +L+ +D++  E+    L  W   I+E          P+   +
Sbjct: 64  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKML 115
Query: 124 LAGNKSDVKT 133
           L G KSD++T
Sbjct: 116 LVGCKSDLRT 125

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N   KI+V+GDS  GKT ++H F  + + + Y+ T+  ++     ++D    +L +WDT+
Sbjct: 26  NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTS 84
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
           G   +  +    Y  +  +L+ +D++  E+    L  W   I+E          P+   +
Sbjct: 85  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKML 136
Query: 124 LAGNKSDVKT 133
           L G KSD++T
Sbjct: 137 LVGCKSDLRT 146

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 114
Query: 127 NKSDVKTQRAVQTKDAQM 144
           NK D++     + + A+M
Sbjct: 115 NKKDLRNDEHTRRELAKM 132

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 114
Query: 127 NKSDVKTQRAVQTKDAQM 144
           NK D++     + + A+M
Sbjct: 115 NKKDLRNDEHTRRELAKM 132

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKTQRAVQTKDAQM 144
           NK D++     + + A+M
Sbjct: 117 NKKDLRNDEHTRRELAKM 134

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 174 LIREQTR 180
              +  R
Sbjct: 177 AALQARR 183

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  +  I++D    +L +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 174 LIREQTR 180
              +  R
Sbjct: 177 AALQARR 183

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKTC++  F  + +   Y+ T+  ++   I ++D    +L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 65
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +       Y     IL+ + + + +S       L+NI E      ++  P+V  +L GNK
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 129 SDVKTQRAVQTKDAQM 144
            D++       + A+M
Sbjct: 119 KDLRNDEHTARELAKM 134

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTA
Sbjct: 11  GQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 69
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
           GQE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +
Sbjct: 70  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 121
Query: 124 LAGNKSDVK 132
           L G K D++
Sbjct: 122 LVGTKLDLR 130

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTA
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 86
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
           GQE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 138
Query: 124 LAGNKSDVK 132
           L G K D++
Sbjct: 139 LVGTKLDLR 147

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 21  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 79
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 80  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 131
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 132 VGTKLDLR 139

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  S++++   W   +        ++  P    +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV--------RHHCPSTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 62
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 114
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 115 VGTKLDLR 122

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 6   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 64
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 65  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 116
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 117 VGTKLDLR 124

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTA
Sbjct: 7   SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTA 65
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
           GQE +  L    Y      L+ + + +  S++++   W   +        ++  P    +
Sbjct: 66  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV--------RHHCPSTPII 117
Query: 124 LAGNKSDVKTQR 135
           L G K D++  +
Sbjct: 118 LVGTKLDLRDDK 129

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P    +L
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPHTPILL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++     + + + Y+ T+   F+  +  I++D    +L +WDTAG 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGL 66
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  L    Y     IL+ + + + +S       L+NI E      ++  P+V  +L G
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 119
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           NK D++             Q  V+ ++ + +A+   +  + E S K    + E F    R
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 3   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 61
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P    +L
Sbjct: 62  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPHTPILL 113
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 114 VGTKLDLR 121

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 3   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 61
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P    +L
Sbjct: 62  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPHTPILL 113
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 114 VGTKLDLR 121

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            Q  K +V+GD  VGKTC++  +        YI T+  ++   ++ +D  P  L +WDTA
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 86
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
           GQE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 138
Query: 124 LAGNKSDVK 132
           L G K D++
Sbjct: 139 LVGTKLDLR 147

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL--DDVPTKLQIWDTAGQ 66
           K++++GD   GKTC++       + + Y+ T+   F+  + D+  D    +L +WDTAGQ
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV---FENYVADVEVDGRRVELALWDTAGQ 68
Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEE---------VGCNSNQNA 116
           E +  L    Y  +  +L+ + +   +S +++   W+  +           VGC  +   
Sbjct: 69  EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRN 128
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
            P  ++ L       + Q+ V +++ Q +AD   +  +YE S K    + E F    R
Sbjct: 129 DPQTIEQLRQ-----EGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    Y      L+ + + +  SF H+   W   +        ++  P+   +L G 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--------RHHCPNTPIILVGT 267
Query: 128 KSDVK 132
           K D++
Sbjct: 268 KLDLR 272

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 9   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAG 67
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  S++++   W   +        ++  P    +L
Sbjct: 68  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV--------RHHCPSTPIIL 119
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 120 VGTKLDLR 127

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTA
Sbjct: 5   SQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 63
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQ 114
           GQE +  L    Y      L+ + V +  SF+++   W+  I           VG   + 
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
              P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 124 RDDPSTIEKLAKNK-----QKPITPETAEKLA 150

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    Y      L+ + + +  SF H+   W   +        ++  P+   +L G 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--------RHHCPNTPIILVGT 267
Query: 128 KSDVK 132
           K D++
Sbjct: 268 KLDLR 272

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    Y      L+ + + +  SF H+   W   +        ++  P+   +L G 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--------RHHCPNTPIILVGT 267
Query: 128 KSDVK 132
           K D++
Sbjct: 268 KLDLR 272

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 3   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 61
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 62  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 121
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 122 DDPSTIEKLAKNK-----QKPITPETAEKLA 147

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  D     + +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGK C++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 9   QAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 67
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           QE +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 68  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 119
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 120 VGTKLDLR 127

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 9   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 67
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 68  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 127
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 128 DDPSTIEKLAKNK-----QKPITPETAEKLA 153

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 12  QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 70
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 71  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 130
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 131 DDPSTIEKLAKNK-----QKPITPETAEKLA 156

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 4   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 62
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 63  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 122
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 123 DDPSTIEKLAKNK-----QKPITPETAEKLA 148

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 5   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 63
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 64  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 123
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 124 DDPSTIEKLAKNK-----QKPITPETAEKLA 149

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 5   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 63
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 64  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 123
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 124 DDPSTIEKLAKNK-----QKPITPETAEKLA 149

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 4   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 62
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 63  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 122
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 123 DDPSTIEKLAKNK-----QKPITPETAEKLA 148

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
            E +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
            E +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 61  LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 113 VGTKLDLR 120

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTA
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 86
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
           G E +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +
Sbjct: 87  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 138
Query: 124 LAGNKSDVK 132
           L G K D++
Sbjct: 139 LVGTKLDLR 147

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 5   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 63
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
            E +  L    Y      L+ + + +  SF+++   W   +        ++  P+   +L
Sbjct: 64  LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 115
Query: 125 AGNKSDVK 132
            G K D++
Sbjct: 116 VGTKLDLR 123

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  KI+V+GD  VGKTC++  F        Y+ T+  +F   ++   +    L +WDTAG
Sbjct: 22  KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAG 80
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN 99
           QE +  L    Y  +  +LL + V N  SF +++
Sbjct: 81  QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS 114

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  KI+V+GD  VGKTC++  F        Y+ T+  +F   ++   +    L +WDTAG
Sbjct: 21  KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAG 79
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN 99
           QE +  L    Y  +  +LL + V N  SF +++
Sbjct: 80  QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS 113

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L + DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+  +  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +        Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K +V+GD  VGKTC++  + ++ + + Y+ T+  D     + +      L ++DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    Y      L+ + V N  SFQ++   W+  ++E         +P+V  +L G 
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--------APNVPFLLIGT 130
Query: 128 KSDVK 132
           + D++
Sbjct: 131 QIDLR 135

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGK C++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 9   QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 67
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
           QE +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 68  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 127
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 128 DDPSTIEKLAKNK-----QKPITPETAEKLA 153

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6  QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
          Q  K +V+GD  VGKTC++  +    +   YI T+  ++   ++ +D  P  L +WDTAG
Sbjct: 4  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 62
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTN 91
          QE +  L    Y   +G     D+T+
Sbjct: 63 QEDYDRLRPLSYPQTVGETYGKDITS 88

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
            E +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 61  LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  ++   ++ +   P  L ++DTAG
Sbjct: 6   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 64
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
            E +  L    Y      L+ + V +  SF+++   W+  I           VG   +  
Sbjct: 65  LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 124
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
             P  ++ LA NK     Q+ +  + A+ LA
Sbjct: 125 DDPSTIEKLAKNK-----QKPITPETAEKLA 150

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  ++ ++G    GKT  V+      + +  I T+G  F  + I   +V  KL  WD  G
Sbjct: 21  EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGG 76
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           Q RFR++   Y RG   I+ M D  + E  +     L N+       ++     +  ++ 
Sbjct: 77  QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL------LDKPQLQGIPVLVL 130
Query: 126 GNKSDVK----TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           GNK D+      +  ++  +   + D   +  Y +SCK+  NID   +TL  LI+
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID---ITLQWLIQ 181

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRF----------CDETYYDTYISTIGIDFKQKIIDLDDV 54
           N  Y+++++G+  VGK+ + + F          C+    DTY  T+ +D +   I L   
Sbjct: 4   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL--- 60
Query: 55  PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCN 111
              L +W+  G+  +  L     +     L++Y +T+  SF+    L   L+   +    
Sbjct: 61  ---LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ---- 111
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
                + D+  +L GNKSD+   R V   + +  A  +   F E S     N+ E F  +
Sbjct: 112 -----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 166
Query: 172 ARLIR 176
            R +R
Sbjct: 167 VRQVR 171

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  ++ ++G    GKT  V+      + +  I T+G + ++    +      ++IWD  G
Sbjct: 21  EEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGG 76
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           Q RFR++   Y RG   I+ M D  + E  +     L N+       ++     +  ++ 
Sbjct: 77  QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNL------LDKPQLQGIPVLVL 130
Query: 126 GNKSDVKT----QRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           GNK D+      ++ ++  +   + D   +  Y +SCK+  NID   +TL  LI+
Sbjct: 131 GNKRDLPNALDEKQLIEKMNLSAIQDR-EICCYSISCKEKDNID---ITLQWLIQ 181

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  ++ ++G    GKT  V+      + +  I T+G  F  + I   +V  KL  WD  G
Sbjct: 30  EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGG 85
Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           Q RFR++   Y RG   I+ M D  + E  +     L N+       ++     +  ++ 
Sbjct: 86  QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL------LDKPQLQGIPVLVL 139
Query: 126 GNKSDVK----TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           GNK D+      +  ++  +   + D   +  Y +SCK+  NID   +TL  LI+
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID---ITLQWLIQ 190

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRF----------CDETYYDTYISTIGIDFKQKIIDLDDV 54
           N  Y+++++G+  VGK+ + + F          C+    DTY  T+ +D +   I L   
Sbjct: 35  NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL--- 91
Query: 55  PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCN 111
              L +W+  G+  +  L     +     L++Y +T+  SF+    L   L+   +    
Sbjct: 92  ---LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ---- 142
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
                + D+  +L GNKSD+   R V   + +  A  +   F E S     N+ E F  +
Sbjct: 143 -----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
Query: 172 ARLIR 176
            R +R
Sbjct: 198 VRQVR 202

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 4  CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
          CNQ +K++++G  N GKT I+++F       T   TIG + ++ ++      T   +WD 
Sbjct: 13 CNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVVK----NTHFLMWDI 67
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLE 93
           GQE  R+    YY     I+L+ D  + E
Sbjct: 68 GGQESLRSSWNTYYSNTEFIILVVDSIDRE 97

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKT ++     + Y +TY+ T+  ++    ++ ++   +L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +LL +D++  E+    L  W   I         +  P    +L G 
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--------LDYCPSTRVLLIGC 123
Query: 128 KSDVKT 133
           K+D++T
Sbjct: 124 KTDLRT 129

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKT ++     + Y +TY+ T+  ++    ++ ++   +L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +LL +D++  E+    L  W   I         +  P    +L G 
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--------LDYCPSTRVLLIGC 122
Query: 128 KSDVKT 133
           K+D++T
Sbjct: 123 KTDLRT 128

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKT ++     + Y +TY+ T+  ++    ++ ++   +L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 87
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +LL +D++  E+    L  W   I         +  P    +L G 
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--------LDYCPSTRVLLIGC 139
Query: 128 KSDVKT 133
           K+D++T
Sbjct: 140 KTDLRT 145

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y++++LGD  VGKT +   F  +   D +   +G D  ++ + +D   T L + DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 68  RFRTLTT--AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-L 124
           +     +  +  +G    +++Y + +  SF+       +  E+     +    D V + L
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFE-------SASELRIQLRRTHQADHVPIIL 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
            GNK+D+   R V  ++ +  A  +   F E S     N+ E F
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 8   YKILVLGDSNVGKTCIVHRFCD---------ETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
           +K++++G+S VGK+ +   F           E   DTY   I +D ++  + + D     
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD----- 78
Query: 59  QIW---DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
            IW   D  G  R   L T         L+++ VT+  SF  +   L  +          
Sbjct: 79  -IWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRA------GR 126
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
              D+  +L GNKSD+   R V  ++ + LA   S    E S   + N  E F    R I
Sbjct: 127 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
Query: 176 R 176
           R
Sbjct: 187 R 187

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M    +  ++L+LG  N GKT I+ +F  E   DT   T+G + K     L+    KL I
Sbjct: 12  MKQKERELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNI 66
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
           WD  GQ+  R+    Y+    G++ + D  + +  Q
Sbjct: 67  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M    +  ++L+LG  N GKT I+ +F  E   DT   T+G + K     L+    KL I
Sbjct: 10  MKQKERELRLLMLGLDNAGKTTILKKFNGEDI-DTISPTLGFNIKT----LEHRGFKLNI 64
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
           WD  GQ+  R+    Y+    G++ + D  + +  Q
Sbjct: 65  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 100

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M    +  ++L+LG  N GKT I+ +F  E   DT   T+G + K     L+    KL I
Sbjct: 12  MKQKERELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNI 66
Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
           WD  GQ+  R+    Y+    G++ + D  + +  Q
Sbjct: 67  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 8   YKILVLGDSNVGKTCI------VHRFCDETYY----DTYISTIGIDFKQKIIDLDDVPTK 57
           Y+++++G+  VGK+ +      VH   D        DTY  T+ +D +   I L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL------ 60
Query: 58  LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQ 114
           L +W+  G+  +  L     +     L++Y +T+  SF+    L   L+   +       
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ------- 111
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
             + D+  +L GNKSD+   R V   + +  A  +   F E S     N+ E F  + R 
Sbjct: 112 --TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQ 169
Query: 175 IR 176
           +R
Sbjct: 170 VR 171

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 8   YKILVLGDSNVGKTCIVHRFCD---------ETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
           +K+++LG+S VGK+ +   F           E   DTY   I +D ++  + + D     
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD----- 67
Query: 59  QIW---DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
            IW   D  G  +   L T         L+++ VT+  SF  +   L  +          
Sbjct: 68  -IWEQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRA------GR 115
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
              D+  +L GNKSD+   R V  ++ + LA   S    E S   + N  E F    R I
Sbjct: 116 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
Query: 176 R 176
           R
Sbjct: 176 R 176

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 8   YKILVLGDSNVGKTCI------VHRFCDETYY----DTYISTIGIDFKQKIIDLDDVPTK 57
           Y+++++G+  VGK+ +      VH   D        DTY  T+ +D +   I L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL------ 60
Query: 58  LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQ 114
           L +W+  G+  +  L     +     L++Y +T+  SF+    L   L+   +       
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ------- 111
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
             + D+  +L GNKSD+   R V   + +  A  +   F E S     N+ E F  + R 
Sbjct: 112 --TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQ 169
Query: 175 IR 176
           +R
Sbjct: 170 VR 171

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q +K++++G  N GKT I+++F       T   TIG + ++ +I+     T+  +WD  
Sbjct: 20  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 74
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
           GQE  R+    YY     ++++ D T+ E
Sbjct: 75  GQESLRSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCD-------ETYYDTYISTIGIDFKQKIIDLDD 53
           M+D    YK+L+LG   VGK+ +   F         E    TY  +I +D ++       
Sbjct: 2   MSD-ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE------- 53
Query: 54  VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGC 110
               L ++D   Q+  R L           +++Y VT+  SF+    L   L+   +   
Sbjct: 54  --ASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--- 108
Query: 111 NSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLT 170
                 + DV  +L GNKSD+   R V   + +  A  +   F E S   + N+   F  
Sbjct: 109 ------TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 171 LARLIR 176
           + R IR
Sbjct: 163 VVRQIR 168

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 28/182 (15%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCD-------ETYYDTYISTIGIDFKQKIIDLDDVPTK 57
              YK+L+LG   VGK+ +   F         E    TY  +I +D ++           
Sbjct: 5   ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE---------AS 55
Query: 58  LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQ 114
           L ++D   Q+  R L           +++Y VT+  SF+    L   L+   +       
Sbjct: 56  LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ------- 108
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
             + DV  +L GNKSD+   R V   + +  A  +   F E S   + N+   F  + R 
Sbjct: 109 --TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 175 IR 176
           IR
Sbjct: 167 IR 168

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5  NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
          +Q +K++++G  N GKT I+++F       T   TIG + ++ +I+     T+  +WD  
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 68
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
          GQE  R+    YY     ++++ D T+ E
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5  NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
          +Q +K++++G  N GKT I+++F       T   TIG + ++ +I+     T+  +WD  
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 68
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
          GQE  R+    YY     ++++ D T+ E
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 7   TYKILVLGDSNVGKTCIVHRFCD-------ETYYDTYISTIGIDFKQKIIDLDDVPTKLQ 59
            YK+L+LG   VGK+ +   F         E    TY  +I +D ++           L 
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE---------ASLM 52
Query: 60  IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQNA 116
           ++D   Q+  R L           +++Y VT+  SF+    L   L+   +         
Sbjct: 53  VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--------- 103
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           + DV  +L GNKSD+   R V   + +  A  +   F E S   + N+   F  + R IR
Sbjct: 104 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q +K++++G  N GKT I+++F       T   TIG + ++ +I+     T+  +WD  
Sbjct: 19  SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 73
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
           GQE  R+    YY     ++++ D T+ E
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 8   YKILVLGDSNVGKTCIVHRFCD---------ETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
           +K++++G+S VGK+ +   F           E   DTY   I +D ++  + + D     
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYD----- 57
Query: 59  QIW---DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
            IW   D  G  +   L T         L+++ VT+  SF  +   L  +          
Sbjct: 58  -IWEQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLR------AGR 105
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
              D+  +L GNKSD+   R V  ++ + LA   S    E S   + N  E F    R I
Sbjct: 106 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
Query: 176 R 176
           R
Sbjct: 166 R 166

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVG--FNVETVTYKNV--KFNVWDVG 374
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTN 91
           GQ++ R L   YY G  G++ + D  +
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCAD 401

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5  NQTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
          N+  +IL++G    GKT ++++    E    T I TIG  F  + +   ++     +WD 
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI--TTIPTIG--FNVETVQYKNIS--FTVWDV 68
Query: 64 AGQERFRTLTTAYYRGAMGILLMYD 88
           GQ+R R+L   YYR   G++ + D
Sbjct: 69 GGQDRIRSLWRHYYRNTEGVIFVVD 93

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5  NQTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
          N+  +IL++G    GKT ++++    E    T I TIG  F  + +   ++     +WD 
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI--TTIPTIG--FNVETVQYKNIS--FTVWDV 68
Query: 64 AGQERFRTLTTAYYRGAMGILLMYD 88
           GQ+R R+L   YYR   G++ + D
Sbjct: 69 GGQDRIRSLWRHYYRNTEGVIFVID 93

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVG 65
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ++ R L   YY G  G++ + D  + +        L  I       N     D + ++
Sbjct: 66  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILI 119
Query: 125 AGNKSDV 131
             NK D+
Sbjct: 120 FANKQDL 126

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVG 64
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ++ R L   YY G  G++ + D  + +        L  I       N     D + ++
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILI 118
Query: 125 AGNKSDV 131
             NK D+
Sbjct: 119 FANKQDL 125

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 9  KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
          ++L+LG  N GKT I+ +F  E   DT   T+G + K     L+    KL IWD  G + 
Sbjct: 3  RLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT----LEHRGFKLNIWDVGGLKS 57
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQ 96
           R+    Y+    G++ + D  + +  Q
Sbjct: 58 LRSYWRNYFESTDGLIWVVDSADRQRMQ 85

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTK---LQIWDT 63
           K+ ++G++  GKT ++ +       D     +T+GID K   I + D   +   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           AG+E F +    +       L +YD++  ++       WL NI+     +  ++SP ++ 
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIK-----ARASSSPVILV 118
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152
               + SD K ++A  +K  + L +    P
Sbjct: 119 GTHLDVSDEKQRKACXSKITKELLNKRGFP 148

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTK---LQIWDT 63
           K+ ++G++  GKT ++ +       D     +T+GID K   I + D   +   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           AG+E F +    +       L +YD++  ++       WL NI+     +  ++SP ++ 
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIK-----ARASSSPVILV 116
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152
               + SD K ++A  +K  + L +    P
Sbjct: 117 GTHLDVSDEKQRKACXSKITKELLNKRGFP 146

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGQDK 56
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
            R L   YY G  G++ + D  + +        L  I       N     D + ++  NK
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILIFANK 110
Query: 129 SDV 131
            D+
Sbjct: 111 QDL 113

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 9  KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
          +IL++G    GKT ++++    E    T I TIG  F  + +   ++     +WD  GQ+
Sbjct: 2  RILMVGLDGAGKTTVLYKLKLGEVI--TTIPTIG--FNVETVQYKNI--SFTVWDVGGQD 55
Query: 68 RFRTLTTAYYRGAMGILLMYD 88
          R R+L   YYR   G++ + D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD 76

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGQDK 56
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
            R L   YY G  G++ + D  + +        L  I       N     D + ++  NK
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILIFANK 110
Query: 129 SDV 131
            D+
Sbjct: 111 QDL 113

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL++G    GKT I+++        T I TIG  F  + ++  ++     +WD  GQ+R
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNIC--FTVWDVGGQDR 73
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
            R L   Y++   G++ + D  + E  Q +   L+ +  V      +   D V +L  NK
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLV------DELRDAVLLLFANK 127
Query: 129 SDVKTQRAV 137
            D+    A+
Sbjct: 128 QDLPNAMAI 136

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGQDK 56
Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
            R L   YY G  G++ + D  + +        L  I       N     D + ++  NK
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREXRDAIILIFANK 110
Query: 129 SDV 131
            D+
Sbjct: 111 QDL 113

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 17  NVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY 76
           N GKT I+ +F  E   DT   T+G + K     L+    KL IWD  GQ+  R+    Y
Sbjct: 28  NAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 77  YRGAMGILLMYDVTNLESFQ 96
           +    G++ + D  + +  Q
Sbjct: 83  FESTDGLIWVVDSADRQRXQ 102

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I+++        T I T+G  F  + +   +V  K  +WD  
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVG 65
Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           G ++ R L   YY G  G++ + D  + +        L  I       N     D + ++
Sbjct: 66  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILI 119
Query: 125 AGNKSDV 131
             NK D+
Sbjct: 120 FANKQDL 126

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDF--KQ----KIIDLDDVPTK-- 57
           Q  K+ ++GD   GKT ++ +   ET+      T G++   KQ    K ++ DD   +  
Sbjct: 40  QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 58  LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNAS 117
              WD  GQE        +   +   +L+ D +  +S +H  YWL++IE+ G       S
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKH--YWLRHIEKYG-----GKS 151
Query: 118 PDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165
           P +V +   NK D      ++ K            F+ +SCK    ++
Sbjct: 152 PVIVVM---NKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-92
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	9e-92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-91
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-91
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	5e-91
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-90
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-90
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-90
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-90
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-90
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-90
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	5e-90
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	9e-90
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-89
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-89
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-89
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-89
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-89
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-88
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-88
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	7e-88
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-87
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-87
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-87
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	7e-87
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	9e-86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-82
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-82
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-79
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-79
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-78
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-76
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-76
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-76
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-76
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-76
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-76
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-75
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-75
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-74
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-74
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-73
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-73
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-72
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-72
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-70
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-67
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	8e-67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-66
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-65
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-64
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-64
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-56
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-43
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-37
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-37
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	7e-37
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-35
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-35
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-35
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-35
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-33
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-32
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-31
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-30
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-20
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	9e-13
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-12
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-11
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  266 bits (683), Expect = 2e-92
 Identities = 86/182 (47%), Positives = 128/182 (70%), Gaps = 11/182 (6%)

Query: 1   MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
           M+  N  Y    K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    
Sbjct: 23  MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82

Query: 57  KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
           KLQIWDTAGQERFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + A
Sbjct: 83  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYA 135

Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           S +V K+L GNK D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+
Sbjct: 136 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195

Query: 177 EQ 178
           ++
Sbjct: 196 KR 197

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  266 bits (683), Expect = 2e-92
 Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 13/178 (7%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YKI++ GD+ VGK+  + R C   + +   +T+G+DF+ K + +D   T LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++  +Y+R A G+LL+YDVT  +SF ++  W+  IE+        A   V  +L GN
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED-------AAHETVPIMLVGN 141

Query: 128 KSD------VKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
           K+D       + Q+ V     + LA  Y   F E S K   NI EA L LAR ++++T
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  266 bits (682), Expect = 2e-92
 Identities = 76/171 (44%), Positives = 111/171 (64%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S+VGKT  + R+ D+++   ++ST+GIDFK K +   D   KLQIWDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGAMG LLMYD+ N ESF  +  W   I+         +  +   +L GN
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT-------YSWDNAQVILVGN 135

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V  +D + LAD+    F+E S K+NIN+ + F  L  +I E+
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  265 bits (681), Expect = 3e-92
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE       +AS DV K++ GN
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  266 bits (681), Expect = 4e-92
 Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 7/184 (3%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M D +  +KI+++G++ VGKTC+V RF    +     +TIG+DF  K ++++    KLQI
Sbjct: 20  MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR++T +YYR A  ++L YD+T  ESF+ L  WL+ IE       Q AS  V
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE-------QYASNKV 132

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
           + VL GNK D+  +R V  + A+  ++   + + E S K++ N+++ FL LA  +  + R
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192

Query: 181 LQAI 184
              +
Sbjct: 193 QNTL 196

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  264 bits (678), Expect = 9e-92
 Identities = 86/182 (47%), Positives = 128/182 (70%), Gaps = 11/182 (6%)

Query: 1   MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
           M+  N  Y    K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD    
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65

Query: 57  KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
           KLQIWDTAGQERFRT+T++YYRGA GI+++YDVT+ ESF ++  WL+ I+       + A
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYA 118

Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           S +V K+L GNK D+ T++ V    A+  AD+  +PF E S K   N++++F+T+A  I+
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178

Query: 177 EQ 178
           ++
Sbjct: 179 KR 180

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  263 bits (675), Expect = 3e-91
 Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 7/176 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           + +  +K+L++G+S+VGKT  + R+ D+T+   ++ST+GIDFK K +   +   KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQER+RT+TTAYYRGAMG +LMYD+TN ESF  +  W   I+         +  +   
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK-------TYSWDNAQV 131

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +L GNK D++ +R V T+  Q+LA+     F+E S K+NI++ +AF  L   I ++
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  264 bits (676), Expect = 3e-91
 Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 7/182 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           + +  +K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD    KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRT+T++YYRG+ GI+++YDVT+ ESF  +  WL+ I+       + A+  V+K
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID-------RYATSTVLK 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
           +L GNK D+K +R V+   A+  AD   +PF E S   + N+++AFLT+AR I+E    Q
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 183 AI 184
            +
Sbjct: 177 NL 178

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  263 bits (675), Expect = 4e-91
 Identities = 76/171 (44%), Positives = 111/171 (64%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KIL++G+S+VGKT  + R+ D+++   ++ST+GIDFK K I  +D   KLQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+RT+TTAYYRGAMG +LMYD+TN ESF  +  W   I+         +  +   +L GN
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK-------TYSWDNAQVLLVGN 121

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ +R V ++  + LAD+    F+E S K NIN+ + F  L  +I E+
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  262 bits (673), Expect = 4e-91
 Identities = 81/179 (45%), Positives = 116/179 (64%), Gaps = 8/179 (4%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQ 59
           +   +  +K++++GDS VGKTC++ RF D  +   T+IST+GIDF+ K++D+D V  KLQ
Sbjct: 4   VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63

Query: 60  IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119
           +WDTAGQERFR++T AYYR A  +LL+YDVTN  SF ++  WL  I E        A  D
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE-------YAQHD 116

Query: 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           V  +L GNK D   +R V+ +D + LA  Y LPF E S K  +N+D AF  +A+ ++ +
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  263 bits (674), Expect = 4e-91
 Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 12/183 (6%)

Query: 1   MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
             D ++ Y    K++++GD++VGKTC+V RF    + +   STIG+DF  K +++     
Sbjct: 19  SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78

Query: 57  KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
           KLQIWDTAGQERFRT+T +YYR A G +L YD+T   SF  + +W++++        + A
Sbjct: 79  KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR-------KYA 131

Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
             ++V++L GNKSD+   R V   +AQ LA++Y  L   E S K + N++EAFL +A  +
Sbjct: 132 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

Query: 176 REQ 178
             +
Sbjct: 192 IMR 194

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  262 bits (673), Expect = 5e-91
 Identities = 67/179 (37%), Positives = 105/179 (58%), Gaps = 11/179 (6%)

Query: 1   MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
           M   +  Y    K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    
Sbjct: 19  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78

Query: 57  KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
           K QIWDTAG ER+R +T+AYYRGA+G LL+YD+    +++++  WLK +         +A
Sbjct: 79  KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-------DHA 131

Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
             ++V +L GNKSD++  RAV T +A+  A+   L F E S   + N++ AF T+   I
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  261 bits (670), Expect = 1e-90
 Identities = 68/171 (39%), Positives = 114/171 (66%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD+ VGK+C++ +F D+ +   +  TIG++F  +++++D    KLQIWDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            FR++T +YYRGA G LL+YD+T  E+F HL  WL++         Q++S ++V +L GN
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-------QHSSSNMVIMLIGN 134

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD++++R V+ ++ +  A  + L F E S K   N++EAF+  A+ I  +
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  261 bits (670), Expect = 2e-90
 Identities = 64/171 (37%), Positives = 104/171 (60%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G+S VGKT ++ RF    +     +TIG++F  + + L     K QIWDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL++D+T  +++  +  WLK +         +A   +V +L GN
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY-------DHAEATIVVMLVGN 138

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+   R V T++A+M A+N  L F E S   + N++ AF T+ + I  +
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  261 bits (669), Expect = 2e-90
 Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            +++++G   VGKT ++ RF D+T+ +   ST+G+DFK K ++L     +LQIWDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RF ++T+AYYR A GI+L+YD+T  E+F  L  W+K I+       + AS D   +L GN
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-------KYASEDAELLLVGN 139

Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D +T R +  +  +  A     + F E S K N N+DE FL L   I ++
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  260 bits (666), Expect = 3e-90
 Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 7/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+  VGKT +V R+C+  + D +I+T+G  F  K +++      L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RF  L   YYR + G +L+YD+T+ +SFQ +  W+K +        +    ++   + GN
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR-------KMLGNEICLCIVGN 119

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K D++ +R V  ++A+  A++     Y  S KQN  I+E FL L + + E
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  260 bits (667), Expect = 3e-90
 Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 7/176 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
             +  +K LV+G++  GK+C++H+F ++ + D    TIG++F  KII++     KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFR++T +YYRGA G LL+YD+T+ E++  L  WL +           AS ++V 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR-------MLASQNIVI 118

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +L GNK D+   R V   +A   A    L F E S     N++EAF+  AR I  +
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 174

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  261 bits (668), Expect = 4e-90
 Identities = 68/171 (39%), Positives = 102/171 (59%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K LV+G +  GK+C++H+F +  +      TIG++F  +++++     KLQIWDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ E++  L  WL +           ASP++V +L GN
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR-------TLASPNIVVILCGN 138

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+  +R V   +A   A    L F E S     N++EAFL  AR I  +
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 189

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  259 bits (665), Expect = 5e-90
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K++V+G+  VGK+ ++ R+C   +   Y  TIG+DF ++ I ++D   +L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            F  +T AYYRGA   +L++  T+ ESF+ ++ W + +             D+   L  N
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA-------EVG-DIPTALVQN 117

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+     ++ ++A+ LA    L FY  S K+++N+ E F  LA    ++
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  259 bits (664), Expect = 9e-90
 Identities = 72/176 (40%), Positives = 114/176 (64%), Gaps = 8/176 (4%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D +  +K+L++GDS VGK+ ++ RF D T+  +YI+TIG+DFK + ++++    KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRT+T+ YYRG  G++++YDVT+ ESF ++  WL  I +           DV +
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ--------NCDDVCR 116

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +L GNK+D   ++ V+T+DA   A    +  +E S K+N+N++E F  +  L+   
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  259 bits (663), Expect = 1e-89
 Identities = 81/171 (47%), Positives = 116/171 (67%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQIWDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+T+  +F ++  W K + E       +A+ +   +L GN
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE-------HANDEAQLLLVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD    R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 117 KSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  260 bits (666), Expect = 1e-89
 Identities = 81/171 (47%), Positives = 116/171 (67%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQ+WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YDVT+  +F ++  W K + E       +A+ +   +L GN
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE-------HANDEAQLLLVGN 133

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD    R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 134 KSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  258 bits (662), Expect = 2e-89
 Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 7/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD  VGK+C++H+F ++ +      TIG++F  +II++     KLQIWDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR +T +YYRGA G L++YD+T   ++ HL+ WL +            +P+ V +L GN
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-------NLTNPNTVIILIGN 128

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K+D++ QR V  ++A+  A+   L F E S K   N+++AFL  A+ I +
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  259 bits (664), Expect = 3e-89
 Identities = 67/182 (36%), Positives = 109/182 (59%), Gaps = 7/182 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D +  +KI+++GDS VGK+ ++ RF    +     STIG++F  + ++++    K QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQER+R +T+AYYRGA+G L++YD++   S+++ N+WL  +        +NA  +V  
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR-------ENADDNVAV 121

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
            L GNKSD+   RAV T++++  A    L F E S   + N+D+AF  L   I ++    
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181

Query: 183 AI 184
            +
Sbjct: 182 QM 183

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  257 bits (658), Expect = 5e-89
 Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 7/169 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
             K+ +LGD+ VGK+ I+ RF ++++      TIG  F  K +   +   K  IWDTAG 
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERFR L   YYRG+   +++YD+T  E+F  L  W++ +        Q+  P +V  +AG
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-------QHGPPSIVVAIAG 118

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           NK D+   R V  +DA+  AD+    F E S K  INI+E F+ ++R I
Sbjct: 119 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  257 bits (658), Expect = 6e-89
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 5/175 (2%)

Query: 2   ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-KLQI 60
               +  KI+VLGD   GKT +   F  ET+   Y  TIG+DF  + I L       LQI
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WD  GQ     +   Y  GA G+LL+YD+TN +SF++L  W   +++V    ++ +    
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV----SEESETQP 116

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           +  L GNK D++  R ++ +             + VS K   ++   F  +A  I
Sbjct: 117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  257 bits (658), Expect = 1e-88
 Identities = 67/177 (37%), Positives = 108/177 (61%), Gaps = 7/177 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 118

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           KSD++  RAV T +A+  A+  +L F E S   + N++EAF  +   I      + I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  256 bits (656), Expect = 2e-88
 Identities = 69/180 (38%), Positives = 113/180 (62%), Gaps = 10/180 (5%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
             ++ +KI+V+GDSNVGKTC+ +RFC   + D   +TIG+DF+++ +D+D    K+Q+WD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75

Query: 63  TAGQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV 121
           TAGQERFR ++   YYR    ++ +YD+TN+ SF  L  W++  ++   +   N   D+ 
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ---HLLAN---DIP 129

Query: 122 KVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK---QNINIDEAFLTLARLIREQ 178
           ++L GNK D+++   V T  AQ  AD +S+P +E S K    N +++  F+TLA  ++  
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  256 bits (656), Expect = 4e-88
 Identities = 73/187 (39%), Positives = 112/187 (59%), Gaps = 18/187 (9%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT------ 56
           D +   K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +  +          
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80

Query: 57  ----KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS 112
                LQ+WDTAGQERFR+LTTA++R AMG LLM+D+T+ +SF ++  W+  ++      
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ------ 134

Query: 113 NQNASP-DVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
             NA   +   VL GNK+D+  QR V  + A+ LAD Y +P++E S     N+++A  TL
Sbjct: 135 -ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 172 ARLIREQ 178
             LI ++
Sbjct: 194 LDLIMKR 200

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  254 bits (651), Expect = 6e-88
 Identities = 69/171 (40%), Positives = 110/171 (64%), Gaps = 7/171 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ER+ +L   YYRGA   +++YD+TN ESF     W+K ++       + ASP++V  L+G
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSG 118

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           NK+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+ + +
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  255 bits (653), Expect = 7e-88
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+ +LGD+ VGK+ IV RF  + +      TIG  F  K +   +   K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RF +L   YYRG+   +++YD+T  +SF  L  W+K ++       ++   ++V  +AGN
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK-------EHGPENIVMAIAGN 136

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+   R V  KDA+  A++      E S K  INI+E F  ++R I
Sbjct: 137 KCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  254 bits (651), Expect = 1e-87
 Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 7/181 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   T KIL++G+S VGK+ ++ RF D+T+     +TIG+DFK K I +D    KL IWD
Sbjct: 11  DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLT +YYRGA G++L+YDVT  ++F  L+ WL  +E       +N   D+V 
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET---YCTRN---DIVN 124

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
           +L GNK D K  R V   +    A  +S+ F E S K    +  AF  L   I +   L 
Sbjct: 125 MLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 183

Query: 183 A 183
            
Sbjct: 184 E 184

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  254 bits (650), Expect = 2e-87
 Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 20/191 (10%)

Query: 1   MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-- 56
           M+D +  Y  K L LGDS VGKT +++++ D  +   +I+T+GIDF++K +         
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 57  --------KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
                    LQ+WDTAG ERFR+LTTA++R AMG LL++D+TN +SF ++  W+  ++  
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ-- 120

Query: 109 GCNSNQNA-SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167
                 +A S +   VL GNKSD++ QRAV+ ++A+ LA+ Y +P++E S     NI  A
Sbjct: 121 -----MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175

Query: 168 FLTLARLIREQ 178
              L  LI ++
Sbjct: 176 IEMLLDLIMKR 186

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  253 bits (649), Expect = 2e-87
 Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+++LGD   GK+ +V RF  + + +   STIG  F  + + ++D   K +IWDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   ++++DVTN  SF+    W++ ++          +P++V  LAGN
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQ-------AQGNPNMVMALAGN 125

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           KSD+   R V  +DAQ  A    L F E S K   N+ E F  +AR +
Sbjct: 126 KSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  252 bits (647), Expect = 3e-87
 Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 5/179 (2%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           MA  +  +K+++LGD  VGK+ +++R+    +      TIG++F  K +++D     +QI
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR+L T +YRG+   LL + V + +SFQ+L+ W K        ++       
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY---YADVKEPESF 117

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
             V+ GNK D+ ++R V T++AQ     N   P++E S K   N+  AF    R +   
Sbjct: 118 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  252 bits (647), Expect = 4e-87
 Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 7/175 (4%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
             +  + +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+
Sbjct: 8   FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAGQERFR+L  +Y R +   +++YD+TN  SF   + W+ ++             DV
Sbjct: 68  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT-------ERGSDV 120

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           + +L GNK+D+  +R V T++ +  A   ++ F E S K   N+ + F  +A  +
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  253 bits (649), Expect = 4e-87
 Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 7/176 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++             DV+ +L GN
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT-------ERGSDVIIMLVGN 129

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQA 183
           K+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A  +      Q 
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  253 bits (648), Expect = 7e-87
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 8/183 (4%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG-IDFKQKIIDLDDVPTKLQ 59
           M     TYKI ++GD  VGKT  ++R  D  +   Y +T+G ++     +D      K  
Sbjct: 5   MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64

Query: 60  IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119
           +WDTAGQE+   L   YY GA G +L +DVT+  + Q+L  W+K  + V          +
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV-------VGNE 117

Query: 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
              V+  NK D+K ++ +  K    +    +  ++E+S K   N    FL LAR+   + 
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177

Query: 180 RLQ 182
            L 
Sbjct: 178 DLI 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  249 bits (638), Expect = 8e-86
 Identities = 70/184 (38%), Positives = 108/184 (58%), Gaps = 7/184 (3%)

Query: 1   MADCNQT-YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-KL 58
           M+   +   K+++LGDS VGKT ++HR+ ++ Y   Y +TIG DF  K + +D      +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 59  QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP 118
           Q+WDTAGQERF++L  A+YRGA   +L+YDVTN  SF+++  W         ++N N+  
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV---HANVNSPE 117

Query: 119 DVVKVLAGNKSDVK-TQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIR 176
               V+ GNK D + +++ V  K AQ LA +   +P +  S K  IN+D AF  +AR   
Sbjct: 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

Query: 177 EQTR 180
           +Q +
Sbjct: 178 QQNQ 181

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  250 bits (640), Expect = 9e-86
 Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 4/185 (2%)

Query: 1   MADCNQT-YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQ 59
           M    +   K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 60  IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119
           IWDTAGQERF++L  A+YRGA   +L++DVT   +F+ L+ W          ++     +
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI---QASPRDPEN 117

Query: 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
              V+ GNK D++ ++    +         ++P++E S K+ IN+++AF T+AR   +Q 
Sbjct: 118 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query: 180 RLQAI 184
               +
Sbjct: 178 TEVEL 182

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  241 bits (618), Expect = 3e-82
 Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E+F  L   YY  A   ++M+DVT+  +++++  W +++  V          ++  VL G
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--------CENIPIVLCG 126

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
           NK D+K ++      + +     +L +Y++S K N N ++ FL LAR +     L+
Sbjct: 127 NKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  240 bits (615), Expect = 6e-82
 Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDDVPTKLQIW--DT 63
            K+ V+G++ VGK+ ++  F  +   +   Y  T G++     + + D    ++++  DT
Sbjct: 21  CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80

Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
           AG + ++   + Y+ G    +L++DV+++ESF+    W + ++    ++  +    +  V
Sbjct: 81  AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK----SARPDRERPLRAV 136

Query: 124 LAGNKSDVKTQR-AVQTKDAQMLADNYSLPFYEVSCKQ-NINIDEAFLTLARLIREQTRL 181
           L  NK+D+  QR  V+   AQ  A   +L F++VS      + D  FL++A         
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

Query: 182 QAI 184
           +  
Sbjct: 197 KVA 199

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  232 bits (594), Expect = 6e-79
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 2   ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
              +  +K++++G+S VGK+ +   F        +      D  ++ I +D     L ++
Sbjct: 18  GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77

Query: 62  DTAGQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           D   Q      L     +     L+++ VT+  SF  +   L  +             D+
Sbjct: 78  DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG------RPHHDL 131

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
             +L GNKSD+   R V  ++ + LA   S    E S   + N  E F    R IR +
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  231 bits (591), Expect = 7e-79
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G+S VGK+ +   F        +      D  ++ I +D     L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62

Query: 68  RFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
                L     +     L+++ VT+  SF  +   L  +             D+  +L G
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG------RPHHDLPVILVG 116

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           NKSD+   R V  ++ + LA   S    E S   + N  E F    R IR +
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  230 bits (589), Expect = 3e-78
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++T+K++V+G   VGK+ +  +F    +   Y  TI  D   KI  +D +P +L I DTA
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTA 65

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE F  +   Y R   G LL++ + + +SF  +      I  V          D   VL
Sbjct: 66  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVL 119

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            GNK+D+++QR V   +A     ++ + ++E S K  +N+DEAF  L R +R+ 
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  227 bits (580), Expect = 1e-76
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+++LG   VGKT + H+F +  + + Y  T+   +  KI+ L      L + DTAGQ+
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQD 83

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  L  ++  G  G +L+Y VT+L SFQ +    + + E       +    V  VL GN
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG------HGKTRVPVVLVGN 137

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K+D+  +R VQ  + + LA+++   F E S ++N      F  + + I   
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  226 bits (578), Expect = 1e-76
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    ++ K + LD    ++ I DTAGQE
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQE 77

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V          +V  +L GN
Sbjct: 78  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLVGN 131

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD++ +R V  ++A+  A+ +++ + E S K   N+D+ F  L R IR +
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  225 bits (576), Expect = 2e-76
 Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++G   VGK+ +  +F  + + + Y  T    ++ K + LD    ++ I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y+R   G L ++ +T +ESF     + + I  V          +V  +L GN
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLVGN 117

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD++ +R V  ++A+  AD +++ + E S K   N+D+ F  L R IR +
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  225 bits (577), Expect = 2e-76
 Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 7/178 (3%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +++ KI +LG  +VGK+ +  +F +  + D+Y  TI   F  K+I ++     LQ+ DTA
Sbjct: 4   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ+ +      Y     G +L+Y VT+++SF+ +      + ++           +  +L
Sbjct: 63  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM------VGKVQIPIML 116

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
            GNK D+  +R +  ++ + LA++++  F E S K+N    + F  +     +     
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGAC 174

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  225 bits (576), Expect = 4e-76
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 7/179 (3%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           M + +  Y+++V G   VGK+ +V RF   T+ DTYI TI   ++ ++I  D     LQI
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQI 60

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
            DT G  +F  +           +L++ VT+ +S + L    K I ++     + +  D+
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI-----KGSVEDI 115

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
             +L GNK D +TQR V T++AQ +A  +   F E S K N N+ E F  L  L   + 
Sbjct: 116 PVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  223 bits (572), Expect = 6e-76
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F   T+ + Y  TI  DF +K I++D  P+ L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F ++   Y +   G +L+Y + N +SFQ +      I  V           V  +L GN
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           K D++++R V + + + LA+ +  PF E S K    +DE F  + R + 
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  223 bits (572), Expect = 8e-76
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +  Y++ V G   VGK+ +V RF   T+ ++YI T+   ++ ++I  D     LQI DT 
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTT 59

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           G  +F  +           +L+Y +T+ +S + L    + I E+     +     +  +L
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI-----KGDVESIPIML 114

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
            GNK D    R VQ+ +A+ LA  +   F E S K N N+ E F  L  L + +T
Sbjct: 115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  223 bits (571), Expect = 1e-75
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
            TYK++V+GD  VGK+ +  +F  + + D Y  TI  D   K  ++D+    L + DTAG
Sbjct: 17  PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAG 75

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE F  +   Y R   G L++Y VT+  SF+H++ + + I  V              +L 
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV------KDRESFPMILV 129

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDEAFLTLARLIREQ 178
            NK D+   R V     + +A  Y++P+ E S K   +N+D+ F  L R+IR+Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  224 bits (572), Expect = 2e-75
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 7/174 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
             +K++++G   VGK+ +  +F  + + + Y  T    ++ K + LD    ++ I DTAG
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAG 71

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  +   Y+R   G L ++ +T +ESF     + + I  V          +V  +L 
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLV 125

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
           GNKSD++ +R V  ++A+  A+ +++ + E S K   N+D+ F  L R IR + 
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  222 bits (568), Expect = 2e-75
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 8/172 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            YK++V+G   VGK+ +  +     + D    TI   ++ K + +D     L I DTAGQ
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQ 61

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL G
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVG 115

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           NKSD+   R V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+ 
Sbjct: 116 NKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  220 bits (563), Expect = 3e-74
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            YK++V+G   VGK+ +  +     + D Y  TI   ++ K + +D     L I DTAGQ
Sbjct: 21  EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQ 79

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  +   Y R   G L ++ + N +SF  +N + + I+ V        S DV  VL G
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV------KDSDDVPMVLVG 133

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           NK D+   R V TK A  LA +Y +PF E S K    +++AF TL R IR+ 
Sbjct: 134 NKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  220 bits (562), Expect = 4e-74
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 8/174 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +  YK++V+G   VGK+ +  +     + D Y  TI   ++ K + +D     L I DTA
Sbjct: 2   STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTA 60

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE +  +   Y R   G L ++ + N +SF+ ++++ + I+ V        S DV  VL
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVL 114

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            GNK D+   R V TK AQ LA +Y +PF E S K    +D+AF TL R IR+ 
Sbjct: 115 VGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  217 bits (555), Expect = 2e-73
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++VLG   VGK+ +  +F    + + Y  TI   ++ K +++D     L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +   Y +   G  L+Y +T   +F  L    + I  V        + DV  +L GN
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLARLIR 176
           K D++ +R V  +  Q LA  +    F E S K  IN++E F  L R I 
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  216 bits (554), Expect = 3e-73
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK+L+LG   VGK+ +   F             G  +  + I +D     L ++D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             R L           +++Y VT+  SF+  +     +           + DV  +L GN
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA------RQTDDVPIILVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+   R V   + +  A  +   F E S   + N+   F  + R IR +
Sbjct: 115 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  215 bits (549), Expect = 2e-72
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 10/175 (5%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           + K+++LG++ VGK+ IV RF    + +    TIG  F  + + +++   K +IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF +L   YYR A   L++YDVT  +SF    +W+K + E        AS D++  L G
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-------QASKDIIIALVG 115

Query: 127 NKSD---VKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           NK D      +R V  ++ + LA+   L F+E S K   N+++ FL +   I  +
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  215 bits (550), Expect = 4e-72
 Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 47/210 (22%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK----- 57
           +   +YK ++LG+S+VGK+ IV R   +T+++   +TIG  F   +++L+D+  K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 58  --------------------------------LQIWDTAGQERFRTLTTAYYRGAMGILL 85
                                             IWDTAGQER+ ++   YYRGA   ++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 86  MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML 145
           ++D++N  +      W+  ++          S + + +L  NK D   +  V   + Q  
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK---------ISSNYIIILVANKIDKN-KFQVDILEVQKY 172

Query: 146 ADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           A + +L F + S K   NI   F  LA  I
Sbjct: 173 AQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  210 bits (536), Expect = 5e-70
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+ + G + VGK+ +V RF  + +   Y  T+   ++     +DD    ++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQE 87

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
                   + R   G +L+YD+T+  SF+ +      ++E+          +V  +L GN
Sbjct: 88  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVGN 140

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDEAFLTLARLIREQTRLQ 182
           K+D+   R V T++ + LA   +  FYE S      NI E F  L R +R +  +Q
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  208 bits (531), Expect = 1e-69
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y++++LGD  VGKT +   F  +   D +   +G D  ++ + +D   T L + DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 68  RFRTLTT--AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           +     +  +  +G    +++Y + +  SF+  +     +         + +  V  +L 
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT------HQADHVPIILV 117

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQA 183
           GNK+D+   R V  ++ +  A  +   F E S     N+ E F  + R +R + R  A
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  203 bits (518), Expect = 1e-67
 Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 22/185 (11%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDT--YISTIGIDFKQKIIDLDDVPT---KLQIWD 62
            K++++G++  GKT ++ +       D     +T+GID K   I + D       L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVV 121
            AG+E F +    +       L +YD++  ++    +  WL NI+               
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--------SSSP 114

Query: 122 KVLAGNKSDVKTQR---AVQTKDAQMLADNYSLP-----FYEVSCKQNINIDEAFLTLAR 173
            +L G   DV  ++   A  +K  + L +    P      +  + +++  + +   T+  
Sbjct: 115 VILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174

Query: 174 LIREQ 178
                
Sbjct: 175 ESLNF 179

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  201 bits (514), Expect = 8e-67
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
             + +LG    GK+ +  +F  + +   Y   +   +      +D  P  L++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             R     Y   A   L++Y V + +SF   + +L+ +      +       +  +L GN
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ----RSIPALLLGN 135

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI-NIDEAFLTLARLIREQ 178
           K D+   R V   +   LA  +   F+EVS   +  ++   F    R  R +
Sbjct: 136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  201 bits (512), Expect = 3e-66
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPT---KLQIWDT 63
           Y+++++G+  VGK+ + + F       D+    +G D  ++ + +D        L +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97

Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
            G+  +  L     +     L++Y +T+  SF+  +     +           + D+  +
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPII 149

Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           L GNKSD+   R V   + +  A  +   F E S     N+ E F  + R +R +
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  196 bits (500), Expect = 7e-65
 Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 10/178 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            ++ VLGD+  GK+ ++HRF   +Y      T    +K K + +D     + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAP 65

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             +     +   A  ++ ++ + +  SFQ ++     +  +           +  V   +
Sbjct: 66  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG--LALALVGTQD 118

Query: 128 KSDVKTQRAVQTKDAQML-ADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           +    + R V    A+ L AD     +YE      +N+D  F  +A+ +    + Q +
Sbjct: 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  195 bits (499), Expect = 1e-64
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 16/176 (9%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
              K+ ++G+ + GK+ +VHR+   TY     S  G  FK K I +D     L I D  G
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGG 76

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
               +     +      ++ ++ + +  SFQ +  +   +           + +V  VL 
Sbjct: 77  PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF------RNASEVPMVLV 125

Query: 126 GNKSDV--KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           G +  +     R +    A+ L+ +     +YE      +N++  F  +A+ +   
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  195 bits (498), Expect = 2e-64
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPT---KLQIWDT 63
           Y+++++G+  VGK+ + + F       D+    +G D  ++ + +D        L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
            G+  +  L     +     L++Y +T+  SF+  +     +           + D+  +
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPII 118

Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           L GNKSD+   R V   + +  A  +   F E S     N+ E F  + R +R +
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  185 bits (471), Expect = 1e-56
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 19/188 (10%)

Query: 2   ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT----- 56
               Q  K+ ++GD   GKT ++ +   ET+      T G++   K              
Sbjct: 36  LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95

Query: 57  ---KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN 113
                  WD  GQE        +   +   +L+ D     +  + +YWL++IE+ G    
Sbjct: 96  KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG---- 148

Query: 114 QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
                    ++  NK D      ++ K            F+ +SCK    ++    +L  
Sbjct: 149 ----GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204

Query: 174 LIREQTRL 181
            +     +
Sbjct: 205 AVLHPDSI 212

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  141 bits (358), Expect = 3e-43
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 13/179 (7%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           + +  +  KI+V+GD  VGKTC++  F        Y+ T+  +F   ++   +    L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHL 75

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPD 119
           WDTAGQE +  L    Y  +  +LL + V N  SF +++  W     E+     ++    
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKW---EPEI-----KHYIDT 127

Query: 120 VVKVLAGNKSDVKT--QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
              VL G K D++      V  ++   L      + + E S    I ++E F      I
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  128 bits (323), Expect = 1e-37
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 23/182 (12%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           ++ K++++GD   GKT ++  F D  + ++Y  T+   +    + +   P  L IWDTAG
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAG 91

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
           Q+ +  L   +Y  A  +LL +DVT+  SF ++   W   +         +    V  ++
Sbjct: 92  QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV--------NHFCKKVPIIV 143

Query: 125 AGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTL 171
            G K+D+                 V     Q +A +  ++ + E S + + N+   F   
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203

Query: 172 AR 173
           A 
Sbjct: 204 AE 205

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  127 bits (320), Expect = 1e-37
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++  K + +GD  VGKTC++  +   T+   Y+ T+  +F    + ++     L +WDTA
Sbjct: 6   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTA 64

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
           GQE +  L    YRGA   +L + + +  S+++++  W+  +        ++ +P V  V
Sbjct: 65  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--------KHYAPGVPIV 116

Query: 124 LAGNKSDV----------KTQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLA 172
           L G K D+               + T   + L      P Y E S K   N+   F    
Sbjct: 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

Query: 173 RLI 175
           R++
Sbjct: 177 RVV 179

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  127 bits (320), Expect = 7e-37
 Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 82/244 (33%)

Query: 7   TYKILVLGDS---------NVGKTCIVHRFC---DETYYDTYISTIG-IDFKQKIIDLDD 53
           TY I V+G S          +GK+C+ +RF     + ++  + S +   DF  ++++ D 
Sbjct: 19  TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDH 78

Query: 54  --------------VPTKLQIW-------DTAGQERFRTLTTAYYRGAM----------- 81
                         V  K+ I        D   Q    T    Y + A            
Sbjct: 79  FLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLM 138

Query: 82  --------------------------GILLMYDVTNLE--SFQHLNYWLKNIEEVGCNSN 113
                                     G LL  DV+     +F     ++ N+        
Sbjct: 139 YFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYN------ 192

Query: 114 QNASPDVVK-VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
              +      V+   K D   +R ++      L+   +L   E S + N+N+D AF TL 
Sbjct: 193 -QLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLV 250

Query: 173 RLIR 176
           +LI 
Sbjct: 251 QLID 254

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  121 bits (306), Expect = 2e-35
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 23/179 (12%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++++GD   GKTC++  F  + + + Y+ T+  +     I++D    +L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  L    Y     IL+ + + + +S +++   W   ++           P+V  +L GN
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--------CPNVPIILVGN 137

Query: 128 KSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
           K D+              Q  V++++ + +A+   +  + E S K    + E F    R
Sbjct: 138 KKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  121 bits (305), Expect = 3e-35
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 21/181 (11%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
              K++V+GD   GKTC++  F  + + + Y+ T+  ++   I  +D    +L +WDTAG
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIE-VDGKQVELALWDTAG 82

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    Y     IL+ + V + +S +++    K + EV     ++  P+V  +L 
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE--KWVPEV-----KHFCPNVPIILV 135

Query: 126 GNKSDV------------KTQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLA 172
            NK D+              Q  V+T D + +A       Y E S K    + E F T  
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195

Query: 173 R 173
           R
Sbjct: 196 R 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  121 bits (304), Expect = 5e-35
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 21/181 (11%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  D     + +D  P  L +WDTAG
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAG 87

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    Y      L+ + + +  SF+  N   K   EV     ++  P+   +L 
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFE--NVRAKWYPEV-----RHHCPNTPIILV 140

Query: 126 GNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLA 172
           G K D+            K    +       +A    ++ + E S      +   F    
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

Query: 173 R 173
           R
Sbjct: 201 R 201

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  120 bits (304), Expect = 6e-35
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 17/186 (9%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  K + +GD  VGKTC++  +    +   YI T+  D     + +D     L +WDTAG
Sbjct: 8   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAG 66

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    YRGA   +L + + +  S++  N   K + E+     +  +P+V  VL 
Sbjct: 67  QEDYSRLRPLSYRGADIFVLAFSLISKASYE--NVLKKWMPEL-----RRFAPNVPIVLV 119

Query: 126 GNKSD--------VKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIR 176
           G K D              + +   + L     +  + E S K   N+   F T  +++ 
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179

Query: 177 EQTRLQ 182
           +  R +
Sbjct: 180 QPPRRK 185

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  115 bits (291), Expect = 5e-33
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 23/191 (12%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  K +++GD  VGKT +V  +    Y   YI T   D    ++ +D  P +LQ+ DTAG
Sbjct: 19  RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAG 77

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVL 124
           Q+ F  L    Y      LL + V +  SFQ+    W   + E+     +   P    +L
Sbjct: 78  QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW---VPEI-----RCHCPKAPIIL 129

Query: 125 AGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTL 171
            G +SD+              ++ V  + A++LA+   +  + E S     N+ E F   
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189

Query: 172 ARLIREQTRLQ 182
                + +  Q
Sbjct: 190 IVAGIQYSDTQ 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  113 bits (285), Expect = 3e-32
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 21/181 (11%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  D     + +D  P  L +WDTAG
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 62

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    Y      L+ + + +  SF+  N   K   EV     ++  P+   +L 
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFE--NVRAKWYPEV-----RHHCPNTPIILV 115

Query: 126 GNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLA 172
           G K D+            K    +       +A    ++ + E S      +   F    
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

Query: 173 R 173
           R
Sbjct: 176 R 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  112 bits (281), Expect = 2e-31
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+V+GDS  GKT ++H F  + + + Y+ T+  ++      +D    +L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQRIELSLWDTSGSPY 88

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +L+ +D++  E+   +   W     E+     Q   P+   +L G 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW---KGEI-----QEFCPNTKMLLVGC 140

Query: 128 KSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNIN-IDEAF 168
           KSD+              Q  V       +A    +  + E S  Q+ N + + F
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  111 bits (279), Expect = 2e-31
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 24/175 (13%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+V+GDS  GKT ++H F  + + + Y+ T+  ++     ++D    +L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +  +    Y  +  +L+ +D++  E+   +   W     E+     Q   P+   +L G 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW---KGEI-----QEFCPNTKMLLVGC 119

Query: 128 KSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNIN-IDEAF 168
           KSD+              Q  V       +A    +  + E S  Q+ N + + F
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  109 bits (274), Expect = 2e-30
 Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 24/183 (13%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
              K++++GD   GKT ++     + Y +TY+ T+  ++    ++ ++   +L +WDT+G
Sbjct: 26  ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG 84

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVL 124
              +  +    Y  +  +LL +D++  E+       W     E+      +  P    +L
Sbjct: 85  SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW---RTEI-----LDYCPSTRVLL 136

Query: 125 AGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCK-QNINIDEAFLT 170
            G K+D+            + Q  +  +    +A    +  + E S      +I   F T
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

Query: 171 LAR 173
            + 
Sbjct: 197 ASM 199

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  107 bits (268), Expect = 1e-29
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 23/183 (12%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
               K +V+GD  VGKTC++  + ++ + + Y+ T+  D     + +      L ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
           GQE +  L    Y      L+ + V N  SFQ+    W   + E+     +  +P+V  +
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW---VPEL-----KEYAPNVPFL 126

Query: 124 LAGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLT 170
           L G + D+              ++ +  +  Q LA    +  + E S      +   F  
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

Query: 171 LAR 173
              
Sbjct: 187 AII 189

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 83.6 bits (207), Expect = 1e-20
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 28/190 (14%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQ-KIIDLDDVP 55
            +KI+  G    GKT  +     +                  T+  DF    I ++    
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 56  TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT------NLESFQHLNYWLKNIEEVG 109
           T+  ++   GQ  +        RG  GI+ + D        N ES +++    +N+ E G
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM---RENLAEYG 130

Query: 110 CNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYSLPFYEVSCKQNINIDEAF 168
              +     DV  V+  NK D+    A+  +    ++      P  E    +   + E  
Sbjct: 131 LTLD-----DVPIVIQVNKRDLP--DALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183

Query: 169 LTLARLIREQ 178
             ++RL+  +
Sbjct: 184 KEVSRLVLAR 193

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 73.1 bits (179), Expect = 7e-16
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 21/181 (11%)

Query: 1   MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
                +  K +V+GD  VGKTC++  +    +   YI T+  D     + +D  P  L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGL 207

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
           WDTAG E +  L    Y      L+ + + +  SF   +   K   EV     ++  P+ 
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH--HVRAKWYPEV-----RHHCPNT 260

Query: 121 VKVLAGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEA 167
             +L G K D+            K    +       +A    ++ + E S      +   
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320

Query: 168 F 168
           F
Sbjct: 321 F 321

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 31/183 (16%)

Query: 5   NQTYKILVLGDSNVGKTCIVHR-FCDETYYDT--YISTIGIDFKQKIIDLDDVPTKLQIW 61
               +IL++G    GK+ I    F   +  +T    ST  I                QIW
Sbjct: 18  GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIW 74

Query: 62  DTAGQERFRTLT---TAYYRGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNA 116
           D  GQ  F   T      +RG   ++ + D  +  +E+   L+  +    +V    N + 
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDM 130

Query: 117 SPDVVKVLAGNKSD-------VKTQRAVQTKDAQMLADN----YSLPFYEVSCKQNINID 165
                +V   +K D       ++TQR +  +    LAD       L FY  S   + +I 
Sbjct: 131 ---NFEVFI-HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIF 185

Query: 166 EAF 168
           EAF
Sbjct: 186 EAF 188

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 31/191 (16%), Positives = 75/191 (39%), Gaps = 25/191 (13%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIG--IDFKQKIIDLDDVPTKLQIWDTAGQ 66
           K+L++G S  GK+ +        Y       +G  ID +   +        L +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQ 62

Query: 67  ERF-----RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV- 120
           + F            ++    ++ ++DV + E  + +  + K ++++     +  SPD  
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQL-----RKYSPDAK 117

Query: 121 VKVLAGNKSDV-------KTQRAVQTKDAQMLADN-YSLPFYEVSCKQNINIDEAFLTLA 172
           + VL  +K D+       +  + +    ++  ++  +       +   + ++ +A+  + 
Sbjct: 118 IFVLL-HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIV 176

Query: 173 -RLIREQTRLQ 182
             LI   +  Q
Sbjct: 177 CSLIPNMSNHQ 187

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 26/183 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +  +IL+LG    GKT I++R        T I TIG  F  + +   ++  K Q+WD  
Sbjct: 5   TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKNL--KFQVWDLG 59

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           G    R     YY     ++ + D  + +        L   L+  E             +
Sbjct: 60  GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA---------I 110

Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           + V A NK D++   A+ + + A  L      +     ++ S  +   +DEA   L   +
Sbjct: 111 LVVFA-NKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

Query: 176 REQ 178
           + +
Sbjct: 168 KSR 170

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 26/183 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++  ++L+LG  N GKT I++R        T + T+G     + +   ++    ++WD  
Sbjct: 20  DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQYKNI--SFEVWDLG 74

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQ   R     Y+     ++ + D T+ +        L   L   E             +
Sbjct: 75  GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS---------L 125

Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           + + A NK D+    A    + A+ L      N +    + S K    + E    L   +
Sbjct: 126 LLIFA-NKQDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

Query: 176 REQ 178
           REQ
Sbjct: 183 REQ 185

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 66.1 bits (162), Expect = 4e-14
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 26/183 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I++R        T   TIG  F  + +   ++  KL +WD  
Sbjct: 16  NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKNL--KLNVWDLG 70

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQ   R     YY     ++ + D T+ +      + L+  L+  E              
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA---------A 121

Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           + V A NK D     A+   + ++ L      + S      S  +   I E    L  +I
Sbjct: 122 LLVFA-NKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

Query: 176 REQ 178
           +E+
Sbjct: 179 KEE 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 16/180 (8%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFC-DETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
           ++   +L LG  N GKT I+++           + TIG  F  +      +     ++D 
Sbjct: 19  SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSL--SFTVFDM 74

Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
           +GQ R+R L   YY+    I+ + D ++          L  +       ++      +  
Sbjct: 75  SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI---PILF 131

Query: 124 LAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            A NK D++   AV +   +Q+L      +           +   + E    L   I+  
Sbjct: 132 FA-NKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 26/185 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q  +IL+LG  N GKT ++ +   E        T G  F  K +       KL +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQGF--KLNVWDIG 68

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQ + R    +Y+     ++ + D  + + F    Q L   L+  +              
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV---------P 119

Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           V + A NK D+ T  A    + A+ L      +        S      + +    + + +
Sbjct: 120 VLIFA-NKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

Query: 176 REQTR 180
             + +
Sbjct: 177 NAKKK 181

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 14/177 (7%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +  +IL++G    GKT I+++        T I TIG  F  + ++  ++     +WD  
Sbjct: 27  KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--CFTVWDVG 81

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ++ R L   Y++   G++ + D  + E  Q     L+ +  +  +  ++A   V+ V 
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM--LQEDELRDA---VLLVF 136

Query: 125 AGNKSDVKT-QRAVQTKDAQMLAD--NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           A NK D+       +  D   L    + +         Q   + +    L+  + ++
Sbjct: 137 A-NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +  ++L+LG  N GKT I+ +F  E        T+G  F  K ++      KL IWD  
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRGF--KLNIWDVG 70

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQ+  R+    Y+    G++ + D  + +      + L   L      G           
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---------T 121

Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP--------FYEVSCKQNINIDEAFLTLA 172
           + + A NK D+    +        + +   L             S     ++      L 
Sbjct: 122 LLIFA-NKQDLPGALSCNA-----IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175

Query: 173 RLIREQ 178
             I  +
Sbjct: 176 DDISSR 181

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +  ++ ++G    GKT  V+      + +  I T+G  F  + I   +V   +++WD  
Sbjct: 20  KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNV--TIKLWDIG 75

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ RFR++   Y RG   I+ M D  + E  +     L N+  +     Q      V VL
Sbjct: 76  GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL--LDKPQLQGI---PVLVL 130

Query: 125 AGNKSDVK 132
             NK D+ 
Sbjct: 131 G-NKRDLP 137

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 26/179 (14%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL++G    GKT I+++        T I TIG  F  + ++  ++     +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--SFTVWDVGGQDK 56

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
            R L   Y++   G++ + D  + E      + L   L   E             V+ V 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA---------VLLVF 107

Query: 125 AGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           A NK D+    A+   +    L      + +             + E    L+  +R Q
Sbjct: 108 A-NKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 19/132 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q +K++++G  N GKT I+++F       T   TIG     + I +++   +  +WD  
Sbjct: 19  SQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINNT--RFLMWDIG 73

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQE  R+    YY     ++++ D T+ E      + L   L + +              
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA---------G 124

Query: 121 VKVLAGNKSDVK 132
           + + A NK DVK
Sbjct: 125 LLIFA-NKQDVK 135

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 26/182 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q +K++++G  N GKT I+++F       T   TIG     + I +++   +  +WD  
Sbjct: 14  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINNT--RFLMWDIG 68

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           GQE  R+    YY     ++++ D T+ E      + L   L + +              
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA---------G 119

Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           + + A NK DVK    +   + +Q L      ++              + +    +   +
Sbjct: 120 LLIFA-NKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

Query: 176 RE 177
           + 
Sbjct: 177 KI 178

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +    +L +G  + GKT +  R     Y DT  ++I           ++    L + D  
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSA-IYKVNNNRGNSLTLIDLP 62

Query: 65  GQERFR-TLTTAYYRGAMGILLMYDVTNLESF-----QHLNYWLKNIEEVGCNSNQNASP 118
           G E  R  L   +   A  ++ + D    +       + L   L +              
Sbjct: 63  GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA---------LK 113

Query: 119 DVVKVL-AGNKSDVKT 133
           +   +L A NK D+  
Sbjct: 114 NSPSLLIACNKQDIAM 129

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 26/136 (19%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
            I++ G  N GKT ++     ++   T + +        +   D   + + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 69  FRTLTTAYYRGAM----GILLMYDVTNLESFQHLNYWLKNIEEVGC------NSNQNASP 118
            R   + Y +       G++ M D T            K +           +  +++  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCE 154

Query: 119 DVVKVL-AGNKSDVKT 133
           + + +L A NKS++ T
Sbjct: 155 NGIDILIACNKSELFT 170

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +T K++ LG  N GKT ++H   D+      + T+      + + +  +      +D  
Sbjct: 23  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTIAGM--TFTTFDLG 77

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
           G  + R +   Y     GI+ + D  + E   
Sbjct: 78  GHIQARRVWKNYLPAINGIVFLVDCADHERLL 109

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 19/132 (14%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  K+L LG  N GKT ++H   ++        T       + + + ++  K   +D  
Sbjct: 21  NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAIGNI--KFTTFDLG 75

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
           G  + R L   Y+    GI+ + D  + E F      L+      E              
Sbjct: 76  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV---------P 126

Query: 121 VKVLAGNKSDVK 132
             +L  NK D  
Sbjct: 127 FVILG-NKIDAP 137

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 26/135 (19%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           I++ G  N GKT ++     ++   T + +        +   D   + + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 70  RTLTTAYY----RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGC------NSNQNASPD 119
           R   + Y     +   G++ M D T            K +           +  +++  +
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCEN 119

Query: 120 VVKVL-AGNKSDVKT 133
            + +L A NKS++ T
Sbjct: 120 GIDILIACNKSELFT 134

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 53.1 bits (127), Expect = 6e-09
 Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 29/176 (16%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           +L++G    GK+ I  +             +       +     +   L + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTLI-DLAVMELPGQLNY 59

Query: 70  RTLT---TAYYRGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNASPDV-VKV 123
              +      ++    ++ + D  +  + +  +L   ++   +V        +P + ++V
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--------NPSINIEV 111

Query: 124 LAGNKSD-------VKTQRAVQTKDAQMLAD----NYSLPFYEVSCKQNINIDEAF 168
           L  +K D       V  QR +  +  + L +       + FY  S   + +I EAF
Sbjct: 112 LI-HKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI-FDHSIYEAF 165

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 4   CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
             +  +IL++G    GKT I+++        T I TIG  F  + ++  ++     +WD 
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--SFTVWDV 216

Query: 64  AGQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPD 119
            GQ++ R L   Y++   G++ + D  + E      + L   L   E             
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA--------- 267

Query: 120 VVKVLAGNKSDVKT 133
           V+ V A NK D+  
Sbjct: 268 VLLVFA-NKQDLPN 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.96
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.95
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.93
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.92
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.91
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.91
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.9
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.9
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.87
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.87
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.84
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.83
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.83
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.8
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.79
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.78
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.74
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.74
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.73
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.73
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.72
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.71
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.71
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.69
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.68
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.65
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.61
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.61
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.6
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.6
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.6
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.53
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.48
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.4
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.25
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.2
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.03
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.91
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.78
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.69
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.62
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.58
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.44
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.42
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.35
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.35
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.3
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.28
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.15
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.12
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.02
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.79
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.76
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.7
2xxa_A	433	Signal recognition particle protein; protein trans	97.68
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.66
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.65
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.62
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.61
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.59
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.59
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.59
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.57
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.56
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.53
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.52
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.52
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.49
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.49
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.48
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.47
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.47
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.47
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.46
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.46
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.45
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.45
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.44
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.44
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.43
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.41
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.41
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.41
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.4
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.39
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.39
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.38
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.37
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.36
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.36
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.35
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.35
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.35
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.35
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.35
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.34
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.33
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.33
1g6h_A	257	High-affinity branched-chain amino acid transport	97.33
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.33
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.33
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.33
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.32
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.32
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.32
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.32
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.31
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.31
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.31
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.3
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.3
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.3
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.3
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.3
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.29
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.29
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.29
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.29
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.28
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.28
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.28
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.27
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.27
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.26
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.25
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.25
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.25
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.25
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.25
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.25
1via_A	175	Shikimate kinase; structural genomics, transferase	97.25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.24
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.24
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.24
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.23
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.22
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.22
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.22
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.21
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.21
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.21
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.2
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.19
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.19
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.18
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.18
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.17
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.17
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.16
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.16
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.15
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.15
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.15
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.14
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.14
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.14
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.13
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.13
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.13
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.11
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.11
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.11
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.11
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.1
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.1
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.09
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.09
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.09
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.09
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.09
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.08
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.07
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.06
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.06
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.04
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.03
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.02
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.02
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.02
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.02
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.02
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.02
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.0
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.99
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.99
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.95
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.95
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.94
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.93
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.92
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.92
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.92
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.92
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.9
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.9
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.88
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.87
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.85
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.85
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.85
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.84
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.81
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.81
3co5_A	143	Putative two-component system transcriptional RES	96.77
2og2_A	359	Putative signal recognition particle receptor; nuc	96.75
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.75
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.73
3bos_A	242	Putative DNA replication factor; P-loop containing	96.72
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.72
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.72
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.72
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.71
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.7
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.68
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.68
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.67
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.67
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.67
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.66
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.65
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.64
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.61
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.6
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.58
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.58
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.58
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.57
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.55
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.55
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.55
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.55
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.53
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.53
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.52
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.52
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.5
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.49
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.48
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.48
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.46
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.45
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.42
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.42
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.41
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.41
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.38
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.37
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.36
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.32
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.32
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.31
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.31
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.28
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.27
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.27
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.26
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.26
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.24
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.24
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.24
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.23
3uc9_A	233	Increased recombination centers protein 6; rossman	96.23
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.22
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.22
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.21
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.21
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.21
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.21
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.2
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.17
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.16
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.12
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.12
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.09
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.09
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.08
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.06
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.02
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.02
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.01
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.01
2qgz_A	308	Helicase loader, putative primosome component; str	96.0
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.99
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.96
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.96
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.94

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.8e-40  Score=234.11  Aligned_cols=168  Identities=35%  Similarity=0.657  Sum_probs=145.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ..+++||+|+|.+|+|||||+++|..+.+...+.|+.+.++....+..++..+.+.||||+|+++|..++..+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34579999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|||++++.+++.+..|+..+...       ..+++|++||+||+|+.+.+++...++..++..++++|+++||++|.|
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~-------~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n  162 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTE-------RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN  162 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHh-------cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence            9999999999999999999999873       457899999999999998889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQ  178 (184)
Q Consensus       164 v~~~~~~l~~~~~~~  178 (184)
                      |+++|++|.+.+...
T Consensus       163 V~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          163 VKQLFRRVAAALPGM  177 (216)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-36  Score=212.72  Aligned_cols=174  Identities=41%  Similarity=0.705  Sum_probs=155.1

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA   80 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   80 (184)
                      |.+.+..++|+++|.+|||||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34556789999999999999999999999988888888888888888888899888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |++++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+++...+...++...+++++++||++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  172 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQY-------ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE  172 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            9999999999999999999999988773       356899999999999987667777788888888899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhh
Q psy12922        161 NINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      |.|++++|++|.+.+.+..+.
T Consensus       173 g~gv~~l~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          173 SDNVEKLFLDLACRLISEARQ  193 (201)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999988875544

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.8e-36  Score=209.47  Aligned_cols=172  Identities=53%  Similarity=0.910  Sum_probs=126.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            34678999999999999999999999988877888888888888888888888899999999999999989999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEH-------ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANI  156 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---C
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            99999999999999999999988773       34689999999999998777777888888999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q psy12922        163 NIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~  181 (184)
                      |++++|++|.+.+.+..+.
T Consensus       157 ~i~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          157 NVENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhc
Confidence            9999999999988875544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1e-35  Score=207.22  Aligned_cols=173  Identities=39%  Similarity=0.729  Sum_probs=151.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..+..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            34678999999999999999999999998877778888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQH-------SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC  169 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999988873       45689999999999998766777788888999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q psy12922        163 NIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~~  182 (184)
                      |++++|++|.+.+.+..+..
T Consensus       170 gi~~l~~~l~~~i~~~~~~~  189 (191)
T 2a5j_A          170 NVEEAFINTAKEIYRKIQQG  189 (191)
T ss_dssp             THHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998766544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.1e-35  Score=209.39  Aligned_cols=173  Identities=49%  Similarity=0.893  Sum_probs=155.4

Q ss_pred             CC-CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcC
Q psy12922          1 MA-DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG   79 (184)
Q Consensus         1 ~~-~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   79 (184)
                      |+ +.+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            54 45778999999999999999999999999888888888888888888889988899999999999999999999999


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK  159 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
                      +|++++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.........++...+++++++||+
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRY-------ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL  153 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999988773       35689999999999998877777788888999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy12922        160 QNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      +|.|++++|++|.+.+.+...
T Consensus       154 ~g~gi~~l~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIKESMS  174 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999998876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=205.48  Aligned_cols=170  Identities=49%  Similarity=0.891  Sum_probs=156.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            35679999999999999999999999998888889999899988888999888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  165 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRY-------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN  165 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            9999999999999999999998873       456899999999999988888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy12922        164 IDEAFLTLARLIREQTR  180 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~  180 (184)
                      ++++|++|.+.+.+...
T Consensus       166 v~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887544

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=203.76  Aligned_cols=172  Identities=42%  Similarity=0.812  Sum_probs=153.8

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            45677999999999999999999999998888888899988988888899988899999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++.+..|+..+...        ..+.|+++|+||+|+...+.........++...+++++++||++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQN--------CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV  156 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH--------CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence            99999999999999999999988763        3589999999999998777778888889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q psy12922        163 NIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~~  182 (184)
                      |+++++++|.+.+.+.++.+
T Consensus       157 gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          157 NVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhh
Confidence            99999999999998876553

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.7e-36  Score=209.85  Aligned_cols=171  Identities=41%  Similarity=0.709  Sum_probs=146.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..++|+++|.+|||||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35679999999999999999999999888777788888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNI  162 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.+...++..++...++ +++++||++|.
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKY-------AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            9999999999999999999998873       357899999999999987667778888899999999 99999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q psy12922        163 NIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~  181 (184)
                      |++++|++|.+.+.+..+.
T Consensus       179 gi~~l~~~l~~~i~~~~~~  197 (201)
T 2hup_A          179 NVEEAFLRVATELIMRHGG  197 (201)
T ss_dssp             SHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhccc
Confidence            9999999999998876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-35  Score=204.63  Aligned_cols=171  Identities=38%  Similarity=0.683  Sum_probs=153.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||.+.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            46679999999999999999999999988877888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+..       ....+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~-------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYD-------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN  174 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHT-------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH-------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            999999999999999999988876       3457899999999999987667777788888989999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy12922        164 IDEAFLTLARLIREQTRL  181 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~~  181 (184)
                      +++++++|.+.+.+..++
T Consensus       175 i~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          175 VELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999998876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.3e-35  Score=204.28  Aligned_cols=171  Identities=41%  Similarity=0.725  Sum_probs=153.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            36679999999999999999999999988888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  159 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARML-------ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN  159 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            9999999999999999999888773       346899999999999976667777788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy12922        164 IDEAFLTLARLIREQTRL  181 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~~  181 (184)
                      ++++|+++.+.+.+..+.
T Consensus       160 i~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          160 VEEAFVQCARKILNKIES  177 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999988875543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.7e-35  Score=203.05  Aligned_cols=170  Identities=37%  Similarity=0.649  Sum_probs=150.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....++|+++|.+|||||||+++|....+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988877788888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++....|+..+...       ..++.|+++|+||+|+...++....+...++...+++++++||++|.|
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQ-------GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            9999999999999999999998873       356899999999999987777788888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy12922        164 IDEAFLTLARLIREQTR  180 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~  180 (184)
                      +++++++|.+.+.+.+.
T Consensus       162 i~~l~~~l~~~~~~~~~  178 (181)
T 2efe_B          162 VKEIFYEIARRLPRVQP  178 (181)
T ss_dssp             HHHHHHHHHHTCC----
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999988766543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=6.8e-35  Score=202.67  Aligned_cols=168  Identities=45%  Similarity=0.808  Sum_probs=151.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            35679999999999999999999999988777788888888878887888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+........+++...+++++++||++|.|
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTY-------SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN  171 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            9999999999999999999988873       356899999999999987667777788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQ  178 (184)
Q Consensus       164 v~~~~~~l~~~~~~~  178 (184)
                      +++++++|.+.+.+.
T Consensus       172 i~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          172 VKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=206.56  Aligned_cols=171  Identities=40%  Similarity=0.740  Sum_probs=143.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            46679999999999999999999999888778888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.|
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  174 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTL-------ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN  174 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999988773       357899999999999977667777788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy12922        164 IDEAFLTLARLIREQTRL  181 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~~  181 (184)
                      ++++|++|.+.+.+..+.
T Consensus       175 i~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          175 VEEAFLKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999988875544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.7e-35  Score=201.33  Aligned_cols=166  Identities=40%  Similarity=0.790  Sum_probs=150.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            45679999999999999999999999988777888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNL-------TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN  164 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999888773       456899999999999987667777888889999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIR  176 (184)
Q Consensus       164 v~~~~~~l~~~~~  176 (184)
                      ++++|++|.+.+.
T Consensus       165 i~~l~~~l~~~i~  177 (179)
T 1z0f_A          165 VEDAFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1e-34  Score=200.62  Aligned_cols=167  Identities=33%  Similarity=0.571  Sum_probs=150.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....+||+++|.+|||||||+++|....+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            34679999999999999999999999888888888887666 66677889888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC-CCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNI  162 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~  162 (184)
                      ++|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+.+.+.+...+...++...+++++++||+ +|.
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRV------KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL  167 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH------HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence            9999999999999999999888764      345789999999999998878888888999999999999999999 999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIRE  177 (184)
Q Consensus       163 gv~~~~~~l~~~~~~  177 (184)
                      |++++|++|.+.+.+
T Consensus       168 ~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          168 NVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=4.8e-35  Score=199.70  Aligned_cols=166  Identities=49%  Similarity=0.894  Sum_probs=142.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999887788888888888888888888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+. .+.........++...+++++++||++|.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  152 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEH-------ANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNV  152 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999999988873       35689999999999994 3456667788888888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQ  178 (184)
Q Consensus       165 ~~~~~~l~~~~~~~  178 (184)
                      ++++++|.+.+.+.
T Consensus       153 ~~l~~~l~~~~~~~  166 (170)
T 1g16_A          153 NEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5e-35  Score=199.51  Aligned_cols=165  Identities=42%  Similarity=0.733  Sum_probs=148.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45679999999999999999999999888777788888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++....|+..+...       ..+..|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  155 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            9999999999999999999988873       456899999999999977667777788888989999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLI  175 (184)
Q Consensus       164 v~~~~~~l~~~~  175 (184)
                      +++++++|.+.+
T Consensus       156 i~~l~~~i~~~~  167 (170)
T 1r2q_A          156 VNEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.8e-35  Score=201.88  Aligned_cols=167  Identities=36%  Similarity=0.697  Sum_probs=143.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999888878888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKM-------LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-------HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            9999999999999999998888763       345799999999999987667777888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIRE  177 (184)
Q Consensus       164 v~~~~~~l~~~~~~  177 (184)
                      +++++++|.+.+.+
T Consensus       156 i~~l~~~l~~~~~~  169 (170)
T 1z08_A          156 IEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=9e-35  Score=200.22  Aligned_cols=172  Identities=32%  Similarity=0.561  Sum_probs=151.3

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      .....++|+++|.+|||||||+++|.+..+...+.++++..+. ..+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3467899999999999999999999999887777777776655 666788888889999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.++..+..|+..+...      ....+.|+++|+||+|+...+++.......++...+++++++||++|.
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  157 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL  157 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH------HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence            99999999999999999999888553      345689999999999998766777788888888999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q psy12922        163 NIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~  181 (184)
                      |+++++++|.+.+.+.++.
T Consensus       158 gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          158 NVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             SHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhhcc
Confidence            9999999999998876543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-34  Score=199.75  Aligned_cols=170  Identities=48%  Similarity=0.856  Sum_probs=143.1

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      ..+..++|+++|.+|||||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3467899999999999999999999998874 466788888888877788888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      ++++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.........++...+++++++||++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEY-------AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTG  158 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-------CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            999999999999999999999988873       3478999999999999877777777888888888999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIREQT  179 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~  179 (184)
                      .|+++++++|.+.+.+..
T Consensus       159 ~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          159 LNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999887543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=4.8e-35  Score=201.94  Aligned_cols=168  Identities=26%  Similarity=0.462  Sum_probs=148.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|||||||+++|....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4679999999999999999999999888888888887666 666778888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++++++.+..|+..+...      ....++|+++|+||+|+...+.+...+...++...+++++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDM------VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA  156 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH------C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence            999999999999999999988764      34568999999999999888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      +++|++|.+.+...+
T Consensus       157 ~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          157 VDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887644

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.6e-35  Score=202.63  Aligned_cols=168  Identities=36%  Similarity=0.664  Sum_probs=149.5

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +...+++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            34567999999999999999999999988888888888888888888889988899999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++....|+..+...       ...+.|+++|+||+|+.+.+.........++...+++++++||++|.
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTE-------RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  162 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-------HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            99999999999999999999888763       34689999999999998766777777888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIRE  177 (184)
Q Consensus       163 gv~~~~~~l~~~~~~  177 (184)
                      |+++++++|.+.+.+
T Consensus       163 ~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          163 NVKQLFRRVAAALPG  177 (179)
T ss_dssp             SHHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999886643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.3e-34  Score=197.62  Aligned_cols=166  Identities=37%  Similarity=0.693  Sum_probs=150.2

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +.++.++|+++|.+|||||||+++|.+..+...+.++.+.++....+...+....+.+|||||.+.+...+..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            34678999999999999999999999998877888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++....|+..+..       ...+..|+++|+||+|+...++........++...+++++++||++|.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~-------~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQ-------HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI  154 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHH-------HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence            9999999999999999999998887       345789999999999998766777788888999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLI  175 (184)
Q Consensus       163 gv~~~~~~l~~~~  175 (184)
                      |+++++++|.+.+
T Consensus       155 ~i~~l~~~i~~~i  167 (170)
T 1z0j_A          155 NINELFIEISRRI  167 (170)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-34  Score=202.55  Aligned_cols=168  Identities=45%  Similarity=0.796  Sum_probs=152.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||.+.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            35679999999999999999999999988777888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTY-------SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN  157 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-------SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence            9999999999999999999988773       356899999999999987777788888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQ  178 (184)
Q Consensus       164 v~~~~~~l~~~~~~~  178 (184)
                      ++++|++|.+.+.+.
T Consensus       158 i~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          158 VKQTFERLVDVICEK  172 (203)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.1e-34  Score=199.24  Aligned_cols=173  Identities=35%  Similarity=0.607  Sum_probs=147.4

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA   80 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   80 (184)
                      |+..+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus         1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (177)
T 1wms_A            1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS   80 (177)
T ss_dssp             -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred             CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence            67778899999999999999999999999988888888888888888888899888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-hcCCCEEEeecC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCK  159 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~  159 (184)
                      |++++|+|++++.+++.+..|+..+......   ....+.|+++|+||+|+. .+.........++. ..+++++++||+
T Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~  156 (177)
T 1wms_A           81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADV---KEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAK  156 (177)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTC---SCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHccc---cccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCC
Confidence            9999999999999999999998888764211   123689999999999997 35666777777877 567899999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      +|.|++++|++|.+.+.+
T Consensus       157 ~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          157 DATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.4e-34  Score=200.22  Aligned_cols=173  Identities=40%  Similarity=0.716  Sum_probs=151.2

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEE-EEEEEeCCe---------eEEEEEEeCCCccccccc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFK-QKIIDLDDV---------PTKLQIWDTAGQERFRTL   72 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~G~~~~~~~   72 (184)
                      +.+..++|+++|.+|||||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            3466799999999999999999999998887777888887777 556666655         678999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP  152 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      +..+++.+|++++|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+.........++...+++
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH------AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP  160 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH------SSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999988874      23368999999999999876677777888889889999


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      ++++||++|.|+++++++|.+.+.+..+.
T Consensus       161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          161 YFETSAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998876543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.7e-36  Score=207.35  Aligned_cols=169  Identities=44%  Similarity=0.791  Sum_probs=153.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            45679999999999999999999999988888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  172 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTY-------SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS  172 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            9999999999999999999999873       457899999999999987777888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQT  179 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~  179 (184)
                      ++++|++|.+.+.+..
T Consensus       173 i~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          173 VRQAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999887653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=198.25  Aligned_cols=171  Identities=23%  Similarity=0.356  Sum_probs=135.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--cccchHhhhcCCcE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--FRTLTTAYYRGAMG   82 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~~~~~~~~d~   82 (184)
                      +..++|+++|.+|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||...  +......+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            46799999999999999999999988765433 3455566667777888888899999999887  55666788899999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+++...+...++...+++++++||++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~------~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~  154 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRT------HQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQH  154 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHC------C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh------hccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence            99999999999999999998888763      234589999999999998777777777888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q psy12922        163 NIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~~  182 (184)
                      |+++++++|.+.+...++.+
T Consensus       155 gi~~l~~~l~~~~~~~~~~~  174 (175)
T 2nzj_A          155 NVAELFEGVVRQLRLRRRDS  174 (175)
T ss_dssp             SHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHhhccC
Confidence            99999999999998776654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=197.68  Aligned_cols=163  Identities=37%  Similarity=0.673  Sum_probs=146.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..++|+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            36899999999999999999999998887888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC---ccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ---RAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      |+|++++.+++....|+..+...       ...+.|+++|+||+|+...   +++.......++...+++++++||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQ-------ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE  154 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEecCChHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999988873       3578999999999999654   5667777888888899999999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLI  175 (184)
Q Consensus       163 gv~~~~~~l~~~~  175 (184)
                      |+++++++|.+.+
T Consensus       155 gi~~l~~~l~~~i  167 (170)
T 1ek0_A          155 NVNDVFLGIGEKI  167 (170)
T ss_dssp             THHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.9e-35  Score=203.57  Aligned_cols=168  Identities=38%  Similarity=0.632  Sum_probs=150.0

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++.+||+++|.+|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            36789999999999999999999999988777888888888888887888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.....+..+++...+++++++||++|.|
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  172 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEH-------GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN  172 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHh-------CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence            9999999999999999999998873       356899999999999986667777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQ  178 (184)
Q Consensus       164 v~~~~~~l~~~~~~~  178 (184)
                      +++++++|.+.+.+.
T Consensus       173 i~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          173 IEELFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=202.91  Aligned_cols=168  Identities=42%  Similarity=0.746  Sum_probs=143.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34678999999999999999999999988877788888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQN  161 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~  161 (184)
                      +++|+|++++.+++.+..|+..+..       ....+.|+++|+||+|+...+++...+...++... +++++++||++|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~-------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g  174 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDK-------YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN  174 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHH-------hcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            9999999999999999999888877       34568999999999999876677777788888875 789999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIRE  177 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~  177 (184)
                      .|+++++++|.+.+.+
T Consensus       175 ~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          175 FNVDEIFLKLVDDILK  190 (192)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=9.9e-35  Score=198.14  Aligned_cols=166  Identities=24%  Similarity=0.291  Sum_probs=133.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-chHhhhcCCcEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-LTTAYYRGAMGILL   85 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~   85 (184)
                      .+||+++|.+|||||||+++|.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999998776666666667778888888899999999999999988876 66777889999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++++++.+..|+..+...      ....++|+++|+||+|+.+.+.........++...+++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  155 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAG------RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR  155 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH------STTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhc------ccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHH
Confidence            99999999999999999988874      333589999999999998777888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        166 EAFLTLARLIREQ  178 (184)
Q Consensus       166 ~~~~~l~~~~~~~  178 (184)
                      ++|+++.+.+...
T Consensus       156 ~l~~~l~~~i~~~  168 (169)
T 3q85_A          156 ELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.2e-35  Score=202.20  Aligned_cols=172  Identities=31%  Similarity=0.482  Sum_probs=147.9

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      +....++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|
T Consensus         2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   81 (178)
T 2hxs_A            2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ   81 (178)
T ss_dssp             CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence            346789999999999999999999999888777788888788888887776 6778999999999999999999999999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      ++++|+|++++.+++.+..|+..+......    .....|+++|+||+|+.+.+.........++...+++++++||++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSEE----SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHHH----HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            999999999999999999998888763110    0134458999999999876677777888888889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIREQ  178 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~  178 (184)
                      .|++++|++|.+.+.+.
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=8.4e-35  Score=198.12  Aligned_cols=164  Identities=34%  Similarity=0.658  Sum_probs=148.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            56799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...        ..+.|+++|+||+|+...++....+...++...+++++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  154 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAE--------VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV  154 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH--------HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence            999999999999999999988774        268999999999999876677777888888889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIR  176 (184)
Q Consensus       165 ~~~~~~l~~~~~  176 (184)
                      ++++++|.+.+.
T Consensus       155 ~~l~~~l~~~~~  166 (168)
T 1z2a_A          155 SEVFKYLAEKHL  166 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998775

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=202.80  Aligned_cols=170  Identities=24%  Similarity=0.280  Sum_probs=144.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-chHhhhcCCcE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-LTTAYYRGAMG   82 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~   82 (184)
                      .+..++|+++|.+|||||||+++|.+........++++.++....+.+++..+.+.+||++|++.+.. ++..+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            35679999999999999999999986544334455666677777777899899999999999987765 67788899999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|||++++.+++.+..|+..+...      ....++|+++|+||+|+...+.+...+...++...+++++++||++|.
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~  173 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAG------RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH  173 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH------STTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCC
Confidence            99999999999999999999988764      223589999999999998777778888888999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIREQT  179 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~  179 (184)
                      |++++|++|.+.+.+.+
T Consensus       174 ~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          174 NTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             SHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-35  Score=208.02  Aligned_cols=168  Identities=39%  Similarity=0.690  Sum_probs=143.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            56799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...       ...++|+++|+||+|+...+++...+...++...+++++++||++|.|+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  163 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELREN-------ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENV  163 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHH-------CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999998773       3568999999999999876677777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      +++|++|.+.+.+..
T Consensus       164 ~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          164 DKAFEELINTIYQKV  178 (223)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.4e-34  Score=199.96  Aligned_cols=167  Identities=40%  Similarity=0.779  Sum_probs=146.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-cchHhhhcCCcEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-TLTTAYYRGAMGI   83 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~   83 (184)
                      ...+||+++|.+|||||||+++|....+...+.++.+.++....+..++..+.+.+||+||.+.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            567999999999999999999999998888888888888888888888888899999999999988 8889999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC--
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN--  161 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--  161 (184)
                      ++|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+++.......++...+++++++||++|  
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  171 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQH------LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPND  171 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH------CCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCc
Confidence            9999999999999999999988875      33578999999999999876677778888899999999999999999  


Q ss_pred             -CCHHHHHHHHHHHHHH
Q psy12922        162 -INIDEAFLTLARLIRE  177 (184)
Q Consensus       162 -~gv~~~~~~l~~~~~~  177 (184)
                       .|++++|++|.+.+.+
T Consensus       172 ~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GSCHHHHHHHHC-----
T ss_pred             ccCHHHHHHHHHHHHhh
Confidence             9999999999887643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=3e-34  Score=200.20  Aligned_cols=169  Identities=27%  Similarity=0.469  Sum_probs=146.3

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      .+....+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            34567899999999999999999999999887777788776555 45667888888999999999999999999999999


Q ss_pred             EEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC--ccccHHHHHHHHHhcCCC-EEEee
Q psy12922         82 GILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ--RAVQTKDAQMLADNYSLP-FYEVS  157 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S  157 (184)
                      ++++|+|++++.+++.+ ..|+..+...        ..+.|+++|+||+|+...  +.........++...+++ ++++|
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  168 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHY--------IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS  168 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--------CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence            99999999999999997 6787777753        467999999999999753  567788889999999998 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      |++|.|++++|++|.+.+.+.+
T Consensus       169 a~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          169 SVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             TTTTBSHHHHHHHHHHHHHCSC
T ss_pred             cCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999887544

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.7e-33  Score=195.12  Aligned_cols=168  Identities=37%  Similarity=0.607  Sum_probs=144.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.+++|+++|.+|||||||+++|.+..+...+.+++. +.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999888777666665 455566668888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+.. +.........++...+++++++||++|.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  153 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGV  153 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH------TTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            999999999999999999988875      4456899999999999974 456667788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      ++++++|.+.+.+...
T Consensus       154 ~~l~~~l~~~~~~~~~  169 (189)
T 4dsu_A          154 DDAFYTLVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999887554

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-34  Score=198.03  Aligned_cols=168  Identities=43%  Similarity=0.711  Sum_probs=149.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            35699999999999999999999999888888888888888888888988899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.++..+..|+..+...      ....++|+++|+||+|+.. +.....+...++...+++++++||++|.|+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETY------CTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTC------CSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh------cCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            999999999999999998888653      2246899999999999954 456667788888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      ++++++|.+.+.+..
T Consensus       166 ~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          166 QCAFEELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887644

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.3e-35  Score=203.94  Aligned_cols=169  Identities=30%  Similarity=0.487  Sum_probs=143.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+...+..+.+.+|||||++.+...+..+++.+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999998877777777665 556666777888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...      ....++|+++|+||+|+...+.+.......++...+++++++||++|.|+
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v  174 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEG------HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLT  174 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence            999999999999999999988764      33468999999999999877788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      +++|++|.+.+.+...
T Consensus       175 ~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          175 QGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999998876443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.2e-34  Score=198.41  Aligned_cols=175  Identities=39%  Similarity=0.649  Sum_probs=135.0

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      +.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45678999999999999999999999998888888888888888877776 55678999999999999999999999999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-CccccHHHHHHHHH-hcCCCEEEeecC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-QRAVQTKDAQMLAD-NYSLPFYEVSCK  159 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~  159 (184)
                      ++++|+|++++.+++.+..|+..+.....   .....+.|+++|+||+|+.. .+.....+...++. ..+++++++||+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHAN---VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK  160 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHC---CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhc---ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence            99999999999999999999888876421   01236899999999999953 34456677777777 567899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy12922        160 QNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      +|.|+++++++|.+.+.+.++
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999998876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.4e-34  Score=194.72  Aligned_cols=165  Identities=33%  Similarity=0.595  Sum_probs=144.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ++++|+++|++|||||||++++..+.+...+.++.+. .....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4689999999999999999999998887777776663 345667788888889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.+++.+..|+..+...      ....+.|+++|+||+|+...++........++...+++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  154 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH------TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHH
Confidence            99999999999999998888774      334689999999999997766777778888888889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        166 EAFLTLARLIRE  177 (184)
Q Consensus       166 ~~~~~l~~~~~~  177 (184)
                      +++++|.+.+.+
T Consensus       155 ~l~~~l~~~~~~  166 (167)
T 1kao_A          155 ELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=200.03  Aligned_cols=167  Identities=49%  Similarity=0.885  Sum_probs=148.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999998887788888888888888888888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+. .+.........++...+++++++||++|.|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEH-------ANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-------TTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999888773       34689999999999994 3556667778888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      ++++++|.+.+.+..
T Consensus       170 ~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          170 NEIFFTLAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=6.8e-34  Score=196.80  Aligned_cols=170  Identities=29%  Similarity=0.515  Sum_probs=147.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....++|+++|.+|||||||+++|....+...+.++++..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34679999999999999999999999888777777766544 44556788888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++....|+..+...      ....++|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  167 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN  167 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH------HCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence            9999999999999999999888875      2345899999999999987667777888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy12922        164 IDEAFLTLARLIREQTR  180 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~  180 (184)
                      +++++++|.+.+.+.+.
T Consensus       168 i~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          168 VDKVFFDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876553

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=4.7e-34  Score=194.22  Aligned_cols=163  Identities=33%  Similarity=0.577  Sum_probs=142.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +.++|+++|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999998887777777765543 556677788889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCCCCH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINI  164 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv  164 (184)
                      |+|++++.+++.+..|+..+...      ....+.|+++|+||+|+.+.+.........++... +++++++||++|.|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV  154 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH------HCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh------hCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence            99999999999999998888764      23568999999999999876677777888888887 789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        165 DEAFLTLARLI  175 (184)
Q Consensus       165 ~~~~~~l~~~~  175 (184)
                      ++++++|.+.+
T Consensus       155 ~~l~~~l~~~i  165 (167)
T 1c1y_A          155 NEIFYDLVRQI  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.3e-34  Score=204.11  Aligned_cols=171  Identities=41%  Similarity=0.725  Sum_probs=148.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe----------eEEEEEEeCCCccccccch
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV----------PTKLQIWDTAGQERFRTLT   73 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~G~~~~~~~~   73 (184)
                      .+..++|+|+|.+|||||||+++|....+...+.++.+.++....+.+++.          .+.+.+|||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            466799999999999999999999998887777888887777777767665          6789999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF  153 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      ..+++.+|++++|+|++++.+++.+..|+..+...      ....++|+++|+||+|+...+.+.......++...++++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~  175 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPY  175 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh------cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcE
Confidence            99999999999999999999999998888776542      222689999999999998766777788889999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      +++||++|.|+++++++|.+.+.+...
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998876543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9.1e-34  Score=196.40  Aligned_cols=164  Identities=20%  Similarity=0.362  Sum_probs=140.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....+||+++|.+|||||||++++....+...+.++ . ......+.+++..+.+.+|||+|++.+.     +++.+|++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-G-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-C-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-c-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            456799999999999999999999999887766665 3 3334777789989899999999998776     77889999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHHhcC-CCEEEeecCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLADNYS-LPFYEVSCKQ  160 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  160 (184)
                      ++|||++++.+++.+..|+..+...      ....+.|+++|+||+|+.  ..+.+...+...++...+ ++++++||++
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  163 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSF------RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY  163 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTT------SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence            9999999999999999999999863      223689999999999994  456778888899999987 8999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy12922        161 NINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~~  180 (184)
                      |.|++++|++|.+.+.+.++
T Consensus       164 ~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          164 GLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             TBTHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            99999999999998887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=198.20  Aligned_cols=168  Identities=29%  Similarity=0.525  Sum_probs=147.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+|+|.+|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4569999999999999999999999888777777776544 455667888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+++...+...++...+++++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  164 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV  164 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH------TTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence            999999999999999999988875      33458999999999999876677778888899889999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      +++|++|.+.+.+.+
T Consensus       165 ~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          165 DKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999999887653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=5.6e-34  Score=193.87  Aligned_cols=164  Identities=25%  Similarity=0.340  Sum_probs=122.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||+++|.+..... ..++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            5899999999999999999998765532 233333333 34566788889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+.........++...+++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRA------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQA  153 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHC------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Confidence            9999999999999999988774      3356899999999999988788888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        167 AFLTLARLIREQ  178 (184)
Q Consensus       167 ~~~~l~~~~~~~  178 (184)
                      +|++|.+.+.+.
T Consensus       154 l~~~l~~~~~~~  165 (166)
T 3q72_A          154 LFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=201.37  Aligned_cols=166  Identities=41%  Similarity=0.702  Sum_probs=136.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++.++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            35679999999999999999999999888777788888788888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC------CCccccHHHHHHHHHhcCCCEEEee
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK------TQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      ++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+.      ..+.+.......++...+++++++|
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  177 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDA-------AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS  177 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-------C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEee
Confidence            9999999999999999999888763       34689999999999995      3456677778888888999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~  176 (184)
                      |++|.|++++|++|.+.+.
T Consensus       178 A~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          178 AKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999998775

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1e-33  Score=199.18  Aligned_cols=174  Identities=37%  Similarity=0.629  Sum_probs=148.5

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      +.+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            34678999999999999999999999998888888888888888888888888889999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-hcCCCEEEeecCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCKQN  161 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  161 (184)
                      +++|+|++++.+++.+..|+..+......   ....+.|+++|+||+|+.. +.........++. ..+++++++||++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASP---RDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEA  159 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCC---SSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccc---ccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence            99999999999999999998888764210   1125789999999999973 4556666777776 66789999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy12922        162 INIDEAFLTLARLIREQTR  180 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~~  180 (184)
                      .|+++++++|.+.+.+...
T Consensus       160 ~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          160 INVEQAFQTIARNALKQET  178 (207)
T ss_dssp             BSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcc
Confidence            9999999999999887554

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.9e-34  Score=193.09  Aligned_cols=164  Identities=30%  Similarity=0.544  Sum_probs=141.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +.++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999888777777766544 3455678888889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.+++....|+..+...      ....+.|+++|+||+|+...++....+...++...+++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD  155 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH------HCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence            99999999999999999888875      234589999999999998766777788888888899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      +++++|.+.+.
T Consensus       156 ~l~~~l~~~i~  166 (168)
T 1u8z_A          156 KVFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3.2e-33  Score=195.96  Aligned_cols=165  Identities=33%  Similarity=0.608  Sum_probs=145.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCee----------------------------
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVP----------------------------   55 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   55 (184)
                      .++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999998888888888888887777776654                            


Q ss_pred             ---------EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         56 ---------TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        56 ---------~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                               ..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+...         ...|+++|+
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---------~~~piilv~  154 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---------SNYIIILVA  154 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---------SCCEEEEEE
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---------CCCcEEEEE
Confidence                     78999999999999999999999999999999999999999999999988774         239999999


Q ss_pred             eCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       127 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ||+| ...+.....+...++...+++++++||++|.|+++++++|.+.+.+.
T Consensus       155 NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          155 NKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             ECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9999 54466777888899999999999999999999999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=197.49  Aligned_cols=168  Identities=30%  Similarity=0.479  Sum_probs=145.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|||||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||.+. ...+..+++.+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4579999999999999999999999888777777777554 45566788888999999999887 677788899999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC-C
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI-N  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-g  163 (184)
                      +|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+...+.+...+...++...+++++++||++|. |
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN  177 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH------HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh------hCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence            999999999999999998888774      234689999999999998766777788888998889999999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy12922        164 IDEAFLTLARLIREQTR  180 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~  180 (184)
                      ++++|++|.+.+.+.+.
T Consensus       178 i~~l~~~l~~~i~~~~~  194 (196)
T 2atv_A          178 ITEIFYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999999876554

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=197.05  Aligned_cols=170  Identities=28%  Similarity=0.459  Sum_probs=137.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....++|+++|.+|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+|||||++.+...+..+++++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            35679999999999999999999999887777777776444 45666788888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC
Q psy12922         84 LLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS  150 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~  150 (184)
                      ++|+|++++.+++.+. .|+..+...        ..+.|+++|+||+|+..            .+.+.......++...+
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCH--------CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK  167 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--------CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence            9999999999999986 788888763        34899999999999965            24566777888888888


Q ss_pred             C-CEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy12922        151 L-PFYEVSCKQNINIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       151 ~-~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~~  182 (184)
                      + +++++||++|.|++++|++|.+.+.+.+..+
T Consensus       168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~q  200 (201)
T 2q3h_A          168 AASYIECSALTQKNLKEVFDAAIVAGIQYSDTQ  200 (201)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             CcEEEEEecCCCCCHHHHHHHHHHHHhcccccC
Confidence            7 8999999999999999999999998776654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=198.01  Aligned_cols=167  Identities=22%  Similarity=0.352  Sum_probs=140.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..+ ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45679999999999999999999999888777788877555 445667888889999999999988775 5688999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec-CCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC-KQNI  162 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~  162 (184)
                      ++|||++++.+++.+..|+..+.....    ....+.|+++|+||+|+...+.+...+..+++...+++++++|| ++|.
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAK----ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFE  171 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHH----HHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhh----ccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence            999999999999999999988876310    01268999999999999876778888889999999999999999 8999


Q ss_pred             CHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIR  176 (184)
Q Consensus       163 gv~~~~~~l~~~~~  176 (184)
                      |++++|++|.+.+.
T Consensus       172 gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          172 HVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999998774

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=7.9e-34  Score=201.14  Aligned_cols=167  Identities=22%  Similarity=0.436  Sum_probs=143.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|.+|||||||+++|....+...+.++.+..+ ...+..++..+.+.+|||+|++.+...+..+++.+|+++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            4579999999999999999999999998888888887665 455667788889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (184)
                      +|||++++.+++. +..|+..+...        ..+.|+++|+||+|+...            +.+...+...++...++
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDY--------CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHH--------CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            9999999999998 68899988874        368999999999999753            56788889999999999


Q ss_pred             -CEEEeecCCCCC-HHHHHHHHHHHHHHHHh
Q psy12922        152 -PFYEVSCKQNIN-IDEAFLTLARLIREQTR  180 (184)
Q Consensus       152 -~~~~~Sa~~~~g-v~~~~~~l~~~~~~~~~  180 (184)
                       +++++||++|.| ++++|+++.+.+.....
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence             999999999998 99999999998876543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=7.9e-33  Score=192.27  Aligned_cols=170  Identities=36%  Similarity=0.569  Sum_probs=134.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....++|+++|.+|||||||+++|....+...+.++.+.. ....+...+..+.+.+||+||.+.+...+..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            3467999999999999999999999988766666666543 345666788888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...      ....+.|+++|+||+|+.. +.....+..+++...+++++++||++|.|
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  169 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRV------KDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQG  169 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH------HTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHH------hCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            9999999999999999998888764      2245799999999999976 45667778888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy12922        164 IDEAFLTLARLIREQTRL  181 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~~~  181 (184)
                      +++++++|.+.+.+.+.+
T Consensus       170 i~~l~~~l~~~~~~~~~~  187 (190)
T 3con_A          170 VEDAFYTLVREIRQYRMK  187 (190)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999998876544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=5.3e-33  Score=191.21  Aligned_cols=168  Identities=20%  Similarity=0.332  Sum_probs=138.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|.+|||||||+++|.+..+.. +.++.+ +.....+.+++..+.+.+|||||++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999988865 566666 33456677888888999999999876     45778899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHHhc-CCCEEEeecCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLADNY-SLPFYEVSCKQN  161 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~  161 (184)
                      +|+|++++.+++.+..|+..+.....    ....++|+++|+||+|+.  ..+.+...+...++... +++++++||++|
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRG----EGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG  153 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHC----SSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHh----cCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence            99999999999999987766655311    224689999999999994  45567777788888776 689999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhc
Q psy12922        162 INIDEAFLTLARLIREQTRLQA  183 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~~~~~  183 (184)
                      .|++++|++|.+.+.+.++.+.
T Consensus       154 ~~i~~lf~~l~~~~~~~~~~~~  175 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVVTLRKQQQ  175 (178)
T ss_dssp             BTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999888766543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.8e-34  Score=202.03  Aligned_cols=170  Identities=25%  Similarity=0.477  Sum_probs=112.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC--cCCCccccccceeEEEEEEEeCCe--eEEEEEEeCCCccccccchHhhhcCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDDV--PTKLQIWDTAGQERFRTLTTAYYRGA   80 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~   80 (184)
                      ...++|+++|.+|||||||+++|.+.  .+...+.++++.++....+.+++.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999998  676677777777777778878876  78899999999999999999999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCC---CCCeEEEEEeCCCCCC-CccccHHHHHHHHHhcCCCEEEe
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNAS---PDVVKVLAGNKSDVKT-QRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      |++++|+|++++.+++.+..|+..+...       ..   .+.|+++|+||+|+.. .+.+...+...++...+++++++
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~  170 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSA-------RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDV  170 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHH-------CSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEEC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHh-------hcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEe
Confidence            9999999999999999999999998874       23   6899999999999987 67778888899999999999999


Q ss_pred             ecCC-CCCHHHHHHHHHHHHHHHHhh
Q psy12922        157 SCKQ-NINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       157 Sa~~-~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      ||++ |.|++++|++|.+.+.+..+.
T Consensus       171 Sa~~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          171 SANPPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            9999 999999999999988765443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-32  Score=191.90  Aligned_cols=163  Identities=25%  Similarity=0.436  Sum_probs=141.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            4679999999999999999999999888777777776554 455667787888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++.+. .|+..+...        .++.|+++|+||+|+...            +.+...+...++...++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  166 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEY--------APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  166 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence            999999999999987 788888763        348999999999999753            35667778888888887


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                       +++++||++|.|++++|++|.+.+.
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence             8999999999999999999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.8e-34  Score=202.55  Aligned_cols=172  Identities=32%  Similarity=0.518  Sum_probs=144.0

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRG   79 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~   79 (184)
                      |...+..+||+++|.+|||||||+++|.+..+...+.++.+...........+ ..+.+.+|||||++.+...+..++..
T Consensus         5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (218)
T 4djt_A            5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG   84 (218)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence            45567789999999999999999999999888777777777766666655543 34789999999999999999999999


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK  159 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
                      +|++++|+|++++.+++.+..|+..+...       ...+.|+++|+||+|+...+.........++...+++++++||+
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (218)
T 4djt_A           85 ASGAILFFDVTSRITCQNLARWVKEFQAV-------VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK  157 (218)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHH-------HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999999999999999988873       34569999999999998777788888888888999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~~  179 (184)
                      +|.|+++++++|.+.+.+..
T Consensus       158 ~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          158 TAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             TTBTTTHHHHHHHHHHHCCT
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887644

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-33  Score=197.33  Aligned_cols=169  Identities=21%  Similarity=0.332  Sum_probs=138.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc--CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccchHhhhcCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLTTAYYRGAM   81 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d   81 (184)
                      +..+||+++|.+|||||||+++|.+..  +... .++++.++....+.+++..+.+.+|||+|... +..+...+++.+|
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            456999999999999999999998643  2333 34466677777778899888899999999776 4445667788999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      ++++|||++++.+++.+..|+..+...      ....++|+++|+||+|+.+.+.+...+...++...+++++++||++|
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~------~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g  187 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ  187 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTS------GGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHH------hCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence            999999999999999999998887652      12357999999999999876677777777888888999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy12922        162 INIDEAFLTLARLIREQTR  180 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~~  180 (184)
                      .|++++|++|.+.+...+.
T Consensus       188 ~~v~elf~~l~~~i~~~~~  206 (211)
T 2g3y_A          188 HNVKELFEGIVRQVRLRRD  206 (211)
T ss_dssp             BSHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHhcc
Confidence            9999999999998865443

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=4.2e-33  Score=192.91  Aligned_cols=165  Identities=24%  Similarity=0.480  Sum_probs=140.3

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..+..++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            346789999999999999999999999888777777776555 3456677888889999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhc
Q psy12922         83 ILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNY  149 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~  149 (184)
                      +++|+|++++.+++.+ ..|+..+...        .++.|+++|+||+|+.+.            +.+...+...++...
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  153 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  153 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence            9999999999999998 6788888763        358999999999999742            456777788888888


Q ss_pred             C-CCEEEeecC-CCCCHHHHHHHHHHHHH
Q psy12922        150 S-LPFYEVSCK-QNINIDEAFLTLARLIR  176 (184)
Q Consensus       150 ~-~~~~~~Sa~-~~~gv~~~~~~l~~~~~  176 (184)
                      + ++++++||+ +|.|++++|+++.+.+.
T Consensus       154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          154 GAATYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             TCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence            7 689999999 68999999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=4.7e-33  Score=192.49  Aligned_cols=168  Identities=23%  Similarity=0.443  Sum_probs=142.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4579999999999999999999999888777777766444 455667888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++... .|+..+...        ..+.|+++|+||+|+...            +.+...+...++...++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA  153 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHh--------CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCC
Confidence            999999999999987 688888763        248999999999999653            35566677888888887


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~  181 (184)
                       +++++||++|.|+++++++|.+.+.+.+..
T Consensus       154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (186)
T 1mh1_A          154 VKYLECSALTQRGLKTVFDEAIRAVLCPPPV  184 (186)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred             cEEEEecCCCccCHHHHHHHHHHHHhccccc
Confidence             999999999999999999999988654433

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.7e-33  Score=197.92  Aligned_cols=166  Identities=26%  Similarity=0.509  Sum_probs=140.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|+|||||+++|....+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999888777777776444 455667888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--------ccHHHHHHHHHhcCC-CEE
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--------VQTKDAQMLADNYSL-PFY  154 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~  154 (184)
                      +|+|++++.+++.+. .|+..+...        .++.|+++|+||+|+...+.        +...+...++...++ +++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRF--------APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI  157 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEE
Confidence            999999999999986 788888763        34899999999999976543        266777888888886 899


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ++||++|.|++++|++|.+.+.+.+
T Consensus       158 ~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          158 ECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             EccCCCCCCHHHHHHHHHHHHhhhh
Confidence            9999999999999999999887543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3.2e-32  Score=184.69  Aligned_cols=162  Identities=35%  Similarity=0.588  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .++|+++|.+|||||||++++.+..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999988776666666543 345566788888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.+++.+..|+..+...      ....+.|+++|+||+|+.. +.........++...+++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~------~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVED  154 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH------HTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999888774      2345899999999999876 45666778888888999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      ++++|.+.+.
T Consensus       155 l~~~l~~~~~  164 (166)
T 2ce2_X          155 AFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998774

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=6.9e-33  Score=196.26  Aligned_cols=167  Identities=25%  Similarity=0.488  Sum_probs=122.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|||||||+++|.+..+...+.++....+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999887766677665443 455667888889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++.+. .|+..+...        ..++|+++|+||+|+....            .+...+...++...++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  182 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF--------CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA  182 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC
Confidence            999999999999986 688888763        3579999999999997643            4566677888888897


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                       +++++||++|.|++++|++|.+.+.+.+.
T Consensus       183 ~~~~~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          183 VAYLECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             SEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence             89999999999999999999999876544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-33  Score=189.40  Aligned_cols=165  Identities=30%  Similarity=0.502  Sum_probs=139.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||...+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            469999999999999999999999887766666666444 3445567778889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.+++....|+..+....     ....+.|+++|+||+|+...++........++...+++++++||++|.|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~-----~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIK-----GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVK  155 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHH-----C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHh-----CCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHH
Confidence            999999999999888888777632     123579999999999997766777777888888889999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      +++++|.+.+.
T Consensus       156 ~l~~~l~~~~~  166 (172)
T 2erx_A          156 ELFQELLNLEK  166 (172)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=4.5e-33  Score=194.28  Aligned_cols=169  Identities=21%  Similarity=0.273  Sum_probs=136.1

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCc-----------cccccceeEEEEEE-EeCCeeEEEEEEeCCCcccc
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDT-----------YISTIGIDFKQKII-DLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~~   69 (184)
                      ...+..+||+++|.+|||||||++.+.+.. ...           ..++.+.++....+ ..++..+.+.+|||||++.+
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            345678999999999999999997766543 222           23344444444444 45677788999999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCC------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH
Q psy12922         70 RTLTTAYYRGAMGILLMYDVT------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ  143 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  143 (184)
                      ...+..+++.+|++++|+|++      +..+++.+..|+..+.        ....++|+++|+||+|+.+  .....++.
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--------~~~~~~piilv~NK~Dl~~--~~~~~~~~  157 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--------LTLDDVPIVIQVNKRDLPD--ALPVEMVR  157 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--------CCTTSSCEEEEEECTTSTT--CCCHHHHH
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--------cccCCCCEEEEEEchhccc--ccCHHHHH
Confidence            999999999999999999999      4556666777766662        3467899999999999976  36777788


Q ss_pred             HHHHhcCC-CEEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922        144 MLADNYSL-PFYEVSCKQNINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       144 ~~~~~~~~-~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      .++...++ +++++||++|.|++++|++|.+.+.+..+.
T Consensus       158 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             HHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            89999999 999999999999999999999999876654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=3.5e-32  Score=190.85  Aligned_cols=163  Identities=26%  Similarity=0.520  Sum_probs=141.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+++|.+|||||||+++|....+...+.++.+..+.. .+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            467999999999999999999999988877777777766543 4567888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++.. ..|+..+...        .++.|+++|+||+|+...            +.+...+...++...++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  173 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHF--------CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA  173 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence            99999999999998 6777777663        358999999999999764            34666778888888888


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                       +++++||++|.|+++++++|.+.+.
T Consensus       174 ~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          174 FGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence             8999999999999999999998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=205.94  Aligned_cols=165  Identities=50%  Similarity=0.917  Sum_probs=140.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            56799999999999999999999998888888888888898888888998889999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++.+..|+..+..       ....+.|+++|+||+|+...+.........++...+++++++||++|.|+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv  183 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDR-------YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNV  183 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHS-------CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH-------hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            99999999999999999999876       44568999999999999876666666778888999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIR  176 (184)
Q Consensus       165 ~~~~~~l~~~~~  176 (184)
                      +++|++|.+.+.
T Consensus       184 ~~l~~~l~~~l~  195 (199)
T 3l0i_B          184 EQSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999987664

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=193.82  Aligned_cols=165  Identities=24%  Similarity=0.481  Sum_probs=140.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+..+||+++|.+|||||||+++|....+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            35679999999999999999999999988777777776555 44566778788899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC
Q psy12922         84 LLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS  150 (184)
Q Consensus        84 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~  150 (184)
                      ++|+|++++.+++.+ ..|+..+...        ..+.|+++|+||+|+..            .+.+...+...++...+
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  175 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence            999999999999998 6888888763        35899999999999964            24566777888888887


Q ss_pred             -CCEEEeecC-CCCCHHHHHHHHHHHHHH
Q psy12922        151 -LPFYEVSCK-QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       151 -~~~~~~Sa~-~~~gv~~~~~~l~~~~~~  177 (184)
                       ++++++||+ +|.|++++|+++.+.+..
T Consensus       176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          176 AATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence             689999999 689999999999987753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=4.8e-32  Score=188.94  Aligned_cols=168  Identities=20%  Similarity=0.331  Sum_probs=135.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc--CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccchHhhhcCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLTTAYYRGAM   81 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d   81 (184)
                      +..+||+++|.+|||||||+++|.+..  +... .++++.++....+.+++..+.+.+|||+|... +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            567999999999999999999999633  2333 34455666677777899888899999999765 4556677888999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      ++++|||++++.+++....|+..+...      ....++|+++|+||+|+...+.+...+...++...+++++++||++|
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~------~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g  156 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ  156 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH------TTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh------hCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence            999999999999999999988877663      23457999999999999766667777777788888999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIREQT  179 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~~~  179 (184)
                      .|++++|+++.+.+....
T Consensus       157 ~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          157 HNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhc
Confidence            999999999999886543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=191.81  Aligned_cols=170  Identities=32%  Similarity=0.517  Sum_probs=141.6

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA   80 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   80 (184)
                      |+.....++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   80 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG   80 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence            56667889999999999999999999999888766667666444 34455778888899999999999999999999999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |++++|+|++++.+++.+..|+..+....     ....+.|+++|+||+|+.. +.........++...+++++++||++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (199)
T 2gf0_A           81 HAFILVFSVTSKQSLEELGPIYKLIVQIK-----GSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKM  154 (199)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHH-----SCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHh-----cCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCC
Confidence            99999999999999999888887776631     1135789999999999975 45666777888888899999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIRE  177 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~  177 (184)
                      |.|+++++++|.+.+.+
T Consensus       155 ~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          155 NYNVKELFQELLTLETR  171 (199)
T ss_dssp             TBSHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.6e-32  Score=190.24  Aligned_cols=164  Identities=27%  Similarity=0.526  Sum_probs=135.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...+||+++|.+|||||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            457899999999999999999999988877777777755543 3667888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++.. ..|+..+...        .++.|+++|+||+|+...            +.+...+...++...++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  173 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--------CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA  173 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCC
Confidence            99999999999988 6787777663        358999999999999654            34566677888888888


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                       +++++||++|.|+++++++|.+.+..
T Consensus       174 ~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          174 YDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence             89999999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=2.6e-32  Score=191.94  Aligned_cols=163  Identities=24%  Similarity=0.457  Sum_probs=137.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ..+.+||+++|.+|||||||++++....+...+.++++ +.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777777665 45556666788888899999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------ccHHHHHHHHHhcC
Q psy12922         84 LLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNYS  150 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~  150 (184)
                      ++|+|++++.+++... .|+..+...        ..+.|+++|+||+|+.....            +...+...++...+
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  177 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--------CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence            9999999999999987 788888763        36899999999999976433            56677788888888


Q ss_pred             C-CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        151 L-PFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       151 ~-~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      + +++++||++|.|++++|++|.+.+
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          178 AVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            7 599999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=6.7e-33  Score=191.18  Aligned_cols=163  Identities=26%  Similarity=0.517  Sum_probs=124.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.+||+++|.+|+|||||++++....+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45799999999999999999999998877666666654332 23445666777889999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc----------ccHHHHHHHHHhcCC-C
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA----------VQTKDAQMLADNYSL-P  152 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~  152 (184)
                      +|+|++++.+++.+. .|+..+...        ..+.|+++|+||+|+.+.+.          +...+...++...++ +
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHY--------APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPA  156 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCE
Confidence            999999999999987 688888763        34899999999999976544          366777888888887 8


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ++++||++|.|++++|++|.+.+.
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          157 YIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999988763

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=8.2e-33  Score=196.67  Aligned_cols=166  Identities=30%  Similarity=0.602  Sum_probs=145.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ....+||+++|.+|||||||++++..+.+...+.++.+.++........+..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            45679999999999999999999888777777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|++++.+++.+..|+..+...        ..+.|+++|+||+|+.+.....  ....++...+++++++||++|.|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  161 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRV--------CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYN  161 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--------STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999999874        3589999999999997643322  44566777889999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQT  179 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~  179 (184)
                      ++++|++|.+.+....
T Consensus       162 i~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDP  177 (221)
T ss_dssp             TTHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999887543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.2e-31  Score=187.35  Aligned_cols=175  Identities=14%  Similarity=0.216  Sum_probs=130.1

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      ......+|+|+|.+|||||||+++|.+..+.. .+.++.+....  .+.  ...+.+.+|||||++.+...+..+++.+|
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            34677999999999999999999999988876 66777764333  333  34456999999999999999999999999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccC-CCCCCCCCeEEEEEeCCCCCCCccccH---HH-HHHHHHhcCCCEEEe
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNS-NQNASPDVVKVLAGNKSDVKTQRAVQT---KD-AQMLADNYSLPFYEV  156 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~-~~~~~~~~~~~~~~~  156 (184)
                      ++++|+|++++++++....|+..+....... ......++|+++|+||+|+........   .. ...++...+++++++
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS  168 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence            9999999999999999988888876521000 000124899999999999976532211   11 111224567899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922        157 SCKQNINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      ||++|.|++++|++|.+.+.+..+.
T Consensus       169 Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          169 NGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             eCCCccCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998876544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=1.2e-30  Score=182.73  Aligned_cols=169  Identities=39%  Similarity=0.708  Sum_probs=146.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999999887778888888888888888998888999999999999888888999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++....|+..+...       .....|+++|+||+|+...+......+..++...++.++++||+++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i  155 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNV  155 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-------cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            999999999998888888877652       3457899999999999876666677788889899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      ++++++|.+.+.+...
T Consensus       156 ~~l~~~l~~~~~~~~~  171 (199)
T 2f9l_A          156 EEAFKNILTEIYRIVS  171 (199)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.98  E-value=9.2e-32  Score=183.64  Aligned_cols=162  Identities=22%  Similarity=0.316  Sum_probs=126.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|.+|||||||+++|....+. .+.++.+  .....+.++  ...+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45799999999999999999999987764 3455554  334444455  456999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      +|+|++++.++.....|+..+...      ....+.|+++|+||+|+.........   .....+...+++++++||++|
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEE------EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG  153 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhc------hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCC
Confidence            999999999999988888877652      22368999999999999764321111   011112234568999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIRE  177 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~  177 (184)
                      .|+++++++|.+.+.+
T Consensus       154 ~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          154 TGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.98  E-value=5.4e-32  Score=183.67  Aligned_cols=157  Identities=20%  Similarity=0.330  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++.+..+.. +.|+.+  +....+...  .+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 455554  333334333  456999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-H----HHhcCCCEEEeecCCCC
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-L----ADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~  162 (184)
                      |++++.+++....|+..+...      ....+.|+++|+||+|+.....  ...... +    +...+++++++||++|.
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  147 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAE------DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGD  147 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             ECCCHHHHHHHHHHHHHHHhc------hhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCc
Confidence            999999999998888887652      2346899999999999976322  111111 1    11234579999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIRE  177 (184)
Q Consensus       163 gv~~~~~~l~~~~~~  177 (184)
                      |+++++++|.+.+.+
T Consensus       148 gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          148 GLYEGLDWLSNQLRN  162 (164)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=4.1e-32  Score=188.58  Aligned_cols=162  Identities=23%  Similarity=0.420  Sum_probs=128.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+..+..  +...  .+.+.+||+||++.+...+..+++.+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            567999999999999999999999988877777777765543  3333  456999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|+|++++++++....|+..+...      ....+.|+++|+||+|+....  ...+.....     ...+++++++||+
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~  167 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDK------PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCK  167 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhC------cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECC
Confidence            999999999999998888887652      223689999999999997632  112221111     1234678999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~  178 (184)
                      +|.|+++++++|.+.+...
T Consensus       168 ~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          168 EKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             TCTTHHHHHHHHHHTCC--
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999876543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=181.14  Aligned_cols=164  Identities=19%  Similarity=0.267  Sum_probs=127.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc-CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+.++|+++|.+|||||||+++|.+.. +...+.++.+  +....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            467999999999999999999999877 4555555554  4445555554  5699999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeec
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSC  158 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  158 (184)
                      ++|+|++++.+++....|+..+.....    ....+.|+++|+||+|+.+.  ....+......     ..+++++++||
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPD----IKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTT----TTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChh----hccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence            999999999999999988888876310    01168999999999999753  23333444332     23578999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++|.|+++++++|.+.+.+.
T Consensus       169 ~~~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC---
T ss_pred             CCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999877543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.5e-30  Score=180.19  Aligned_cols=160  Identities=22%  Similarity=0.312  Sum_probs=127.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|||||||++++.+.. ...+.++.+..  ...+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999877 55666666533  34444544  56999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|+|++++.+++....|+..+...      ....+.|+++|+||+|+.....  ..+..+..     ...+++++++||+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVE------ERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAV  162 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhC------hhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCC
Confidence            999999999999998888887653      2246899999999999976432  22222221     1345689999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      +|.|+++++++|.+.+.+
T Consensus       163 ~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          163 TGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.2e-31  Score=186.84  Aligned_cols=159  Identities=21%  Similarity=0.342  Sum_probs=119.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|.+|||||||+++|....+. .+.|+.+  +....+...+  +.+.+||+||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            46799999999999999999999987765 3455554  3334444444  56999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-H----HHhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-L----ADNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~  159 (184)
                      +|+|++++.+++....|+..+...      ....+.|+++|+||+|+.+...  ..+... +    +...+++++++||+
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~------~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~  173 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQE------DELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCAT  173 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcc------cccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCC
Confidence            999999999999998888887652      2235899999999999976422  111111 1    11234579999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIR  176 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~  176 (184)
                      +|.|+++++++|.+.+.
T Consensus       174 ~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          174 QGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTBTHHHHHHHHHHHTT
T ss_pred             CcCCHHHHHHHHHHHHh
Confidence            99999999999988763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=4.6e-31  Score=184.80  Aligned_cols=157  Identities=20%  Similarity=0.274  Sum_probs=120.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999987763 344544433  34455666  56999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh----------------
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN----------------  148 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------  148 (184)
                      +|+|++++.+++....|+..+...      ....++|+++|+||+|+.+  .....++..+...                
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTD------ETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELN  169 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC------GGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhC------cccCCCcEEEEEECCCccc--cCCHHHHHHHhCccccccccccccccccc
Confidence            999999999999999998888652      2246899999999999975  4455555555442                


Q ss_pred             -cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        149 -YSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       149 -~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                       .+++++++||++|.|++++|++|.+.
T Consensus       170 ~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          170 ARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHh
Confidence             34579999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1e-30  Score=181.88  Aligned_cols=157  Identities=24%  Similarity=0.311  Sum_probs=124.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|++|||||||++++.+..+. .+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999987764 34455443  344555666  56999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh------------cCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN------------YSLP  152 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~  152 (184)
                      +|+|++++.+++....|+..+...      ....+.|+++|+||+|+..  .....+..+....            .+++
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNI------AELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVE  167 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEE
T ss_pred             EEEECCChHHHHHHHHHHHHHHcc------hhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEE
Confidence            999999999999999998888653      2246899999999999976  3444444444332            3467


Q ss_pred             EEEeecCCCCCHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ++++||++|.|++++|++|.+.
T Consensus       168 ~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          168 VFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEeECCcCCCHHHHHHHHHhh
Confidence            9999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=6.2e-31  Score=181.63  Aligned_cols=161  Identities=19%  Similarity=0.298  Sum_probs=124.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|++|||||||+++|.+..+ ..+.++.+.  ....+..+  .+.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5679999999999999999999998765 334555553  33444455  456999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|+|++++.+++....|+..+...      ....+.|+++|+||+|+......  .+.....     ...+++++++||+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEE------EKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSAL  160 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTC------GGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCC
Confidence            999999999999988888777542      22468999999999999764322  2221111     1234679999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~  178 (184)
                      +|.|++++|++|.+.+.+.
T Consensus       161 ~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          161 TGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             TCTTHHHHHHHHHHTC---
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999877653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-30  Score=180.77  Aligned_cols=162  Identities=19%  Similarity=0.267  Sum_probs=124.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|.+|||||||+++|.++.+. .+.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999987775 555555433  33444554  56999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|+|++++++++....|+..+...      ....+.|+++|+||+|+...  ....+.....     ...+++++++||+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  160 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAH------EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCAL  160 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS------GGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhc------hhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCC
Confidence            999999999999999998888763      12368999999999999753  2223332222     2345689999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~~  179 (184)
                      +|.|+++++++|.+.+....
T Consensus       161 ~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          161 TGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             TTBTHHHHHHHHHHHHCC--
T ss_pred             CCcCHHHHHHHHHHHHHHHh
Confidence            99999999999999876543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.4e-29  Score=176.35  Aligned_cols=164  Identities=40%  Similarity=0.727  Sum_probs=145.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45689999999999999999999999888888899998888888889998888899999999999888889999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|.++..+++.+..|+..+...       .....|+++++||+|+.+.+......+..++...++.++++||+++.|+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v  179 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNV  179 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999998888888777652       3457899999999999765666677788899999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        165 DEAFLTLARLI  175 (184)
Q Consensus       165 ~~~~~~l~~~~  175 (184)
                      ++++++|.+.+
T Consensus       180 ~~l~~~l~~~i  190 (191)
T 1oix_A          180 EAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.1e-31  Score=184.95  Aligned_cols=161  Identities=19%  Similarity=0.285  Sum_probs=126.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++.++|+++|.+|||||||++++....+.. +.++.+  +....+..+  ...+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            568999999999999999999998877643 445554  333344444  356999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-----HHHhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-----LADNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~  159 (184)
                      +|+|++++++++....|+..+...      ....+.|+++|+||+|+......  .+...     .+...+++++++||+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~  166 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDE------DELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSK  166 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTC------STTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhh------hhcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCC
Confidence            999999999999988888877653      33468999999999999764221  11111     112335679999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~  178 (184)
                      +|.|+++++++|.+.+.+.
T Consensus       167 ~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          167 TGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHHHHHHhc
Confidence            9999999999999988654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=3.3e-31  Score=182.90  Aligned_cols=162  Identities=23%  Similarity=0.324  Sum_probs=124.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|++|||||||++++..+.+ ..+.++.+..  ...+.+++  ..+.+||+||...+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998776 4455555533  34444554  56999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  159 (184)
                      +|+|++++.+++....|+..+...      ....+.|+++|+||+|+....  ...+......     ..+++++++||+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~  162 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQE------EELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAI  162 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTS------STTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcC------hhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCC
Confidence            999999999999998888877652      225789999999999997532  2222222221     124579999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~~~  179 (184)
                      +|.|+++++++|.+.+.+.+
T Consensus       163 ~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          163 KGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             GTBTHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            99999999999999887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.4e-30  Score=179.80  Aligned_cols=158  Identities=20%  Similarity=0.262  Sum_probs=123.2

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ..+.++|+++|.+|||||||+++|.+..+ ..+.++.+...  ..+..++  ..+.+||+||++.+...+..+++.+|++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            35679999999999999999999999877 44455555333  3444454  5699999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeec
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSC  158 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa  158 (184)
                      ++|+|++++.+++....|+..+...      ....+.|+++|+||+|+...  ....+.....     ...+++++++||
T Consensus        93 i~v~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa  164 (181)
T 2h17_A           93 IVVVDSTDRERISVTREELYKMLAH------EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCA  164 (181)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhC------hhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccC
Confidence            9999999999999998888887652      12468999999999999753  2222222222     223568999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARL  174 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~  174 (184)
                      ++|.|+++++++|.+.
T Consensus       165 ~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          165 LTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTTBTHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHhh
Confidence            9999999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=2.9e-31  Score=183.69  Aligned_cols=165  Identities=21%  Similarity=0.357  Sum_probs=123.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC--cCCCccccccceeEEEEEEEe---CCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDL---DDVPTKLQIWDTAGQERFRTLTTAYYRGAM   81 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   81 (184)
                      ++||+++|++|||||||+++|.+.  .+...+.++.+.++....+..   .+..+.+.+|||+|++.+..++..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999984  445556777777766655433   234667999999999999999899999999


Q ss_pred             EEEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc---HHHHHHHHHhcCCC----E
Q psy12922         82 GILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ---TKDAQMLADNYSLP----F  153 (184)
Q Consensus        82 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~  153 (184)
                      ++++|+|++++ .+++.+..|+..+...        .++.|+++|+||+|+...+...   ......++...+++    +
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--------ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDY  153 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH--------CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh--------CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhhe
Confidence            99999999987 5788899999988763        2579999999999997644332   22334555566777    9


Q ss_pred             EEeecCCCC-CHHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNI-NIDEAFLTLARLIREQT  179 (184)
Q Consensus       154 ~~~Sa~~~~-gv~~~~~~l~~~~~~~~  179 (184)
                      +++||++|. |++++++.|.+.+.+.+
T Consensus       154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          154 HFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             EECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             EEEecccCchhHHHHHHHHHHHHhccc
Confidence            999999997 99999999988876543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=1.8e-29  Score=189.26  Aligned_cols=164  Identities=23%  Similarity=0.430  Sum_probs=141.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ...++|+++|.+|+|||||++++....+...+.+++.. .....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            35689999999999999999999998887777777654 44556677888888999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++.+. .|+..+...        ..++|+++|+||+|+...            +.+.......++...++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  303 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA  303 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--------CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhh--------CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCC
Confidence            999999999999887 677777763        248999999999998653            45677778889999997


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                       +++++||++|.|++++|++|.+.+..
T Consensus       304 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          304 VKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence             89999999999999999999987753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=7.9e-30  Score=178.17  Aligned_cols=161  Identities=25%  Similarity=0.338  Sum_probs=121.1

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE--Ee-CCeeEEEEEEeCCCccccccch---Hhh
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--DL-DDVPTKLQIWDTAGQERFRTLT---TAY   76 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~D~~G~~~~~~~~---~~~   76 (184)
                      ..++.+||+++|.+|||||||++++.+.... .  ++.+.++.....  .. .+..+.+.+||+||++.|....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            4567899999999999999999988774332 2  333333332222  22 2556779999999999987776   889


Q ss_pred             hcCCcEEEEEEeCCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-------CccccHHHHHHHHH
Q psy12922         77 YRGAMGILLMYDVTNL--ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-------QRAVQTKDAQMLAD  147 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~  147 (184)
                      ++.+|++++|||++++  ++++.+..|+..+...        ..+.|+++|+||+|+..       .+.+.......++.
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~  164 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--------NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD  164 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--------CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence            9999999999999987  6677777777776532        46899999999999864       23444455666777


Q ss_pred             ----hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        148 ----NYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       148 ----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                          ..+++++++||++ .|++++|+++.+.+
T Consensus       165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                6788999999999 99999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.9e-32  Score=192.50  Aligned_cols=162  Identities=24%  Similarity=0.483  Sum_probs=133.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+++|.+|||||||+++|....+...+.+++...+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5679999999999999999999998877666666665333 444556777778889999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcCC
Q psy12922         85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYSL  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~  151 (184)
                      +|+|++++.+++... .|+..+...        ..+.|+++|+||+|+....            .....+...++...++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~--------~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  178 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA  178 (204)
Confidence            999999999998886 677777652        3489999999999996532            3445556777777887


Q ss_pred             -CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        152 -PFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       152 -~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                       +++++||++|.|+++++++|.+.+
T Consensus       179 ~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          179 VKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence             899999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.97  E-value=1.5e-29  Score=172.16  Aligned_cols=153  Identities=20%  Similarity=0.290  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhhc--
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYYR--   78 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--   78 (184)
                      .++|+++|++|||||||+++|.+..+.....++.+.+.....+..++.  .+.+|||||+..+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE--EEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc--EEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            589999999999999999999987665555666666666666666654  59999999988764      23355554  


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      .+|++++|+|+++.+.   ...|+..+..          .+.|+++|+||+|+...+.... ....++...+++++++||
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~----------~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA  146 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME----------MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSA  146 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH----------TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBG
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh----------cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEc
Confidence            8999999999987543   3446666654          3689999999999864333322 356677778899999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLI  175 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~  175 (184)
                      ++|.|++++|++|.+.+
T Consensus       147 ~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          147 AKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGTBSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=5.5e-29  Score=176.00  Aligned_cols=166  Identities=20%  Similarity=0.278  Sum_probs=113.7

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe-eEEEEEEeCCCcccccc-chHhhhc
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV-PTKLQIWDTAGQERFRT-LTTAYYR   78 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~-~~~~~~~   78 (184)
                      |.+....++|+++|.+|||||||+++|....+...+.+ ++.++..  +.+++. .+.+.+|||||+..+.. ++..+++
T Consensus         1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   77 (214)
T 2fh5_B            1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS   77 (214)
T ss_dssp             -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence            66778889999999999999999999999887665543 3334443  445543 56799999999999887 7888899


Q ss_pred             CCcEEEEEEeCCChh-HHHHHHHHHHH-HHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHH-------
Q psy12922         79 GAMGILLMYDVTNLE-SFQHLNYWLKN-IEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLAD-------  147 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~-------  147 (184)
                      .+|++++|+|+++.. ++.....++.. +....     ....++|+++|+||+|+........  ..+.....       
T Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~  152 (214)
T 2fh5_B           78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-----ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS  152 (214)
T ss_dssp             GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-----TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-----hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence            999999999999854 35555444443 33211     2346799999999999976433211  11111111       


Q ss_pred             --------------------------hc--CCCEEEeecCCC------CCHHHHHHHHHHH
Q psy12922        148 --------------------------NY--SLPFYEVSCKQN------INIDEAFLTLARL  174 (184)
Q Consensus       148 --------------------------~~--~~~~~~~Sa~~~------~gv~~~~~~l~~~  174 (184)
                                                ..  +++|++|||++|      .|++++|++|.+.
T Consensus       153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                      11  567999999999      9999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=1.7e-28  Score=175.25  Aligned_cols=166  Identities=20%  Similarity=0.181  Sum_probs=119.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc------cc---ccchHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE------RF---RTLTTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~---~~~~~~   75 (184)
                      ...++|+|+|.+|||||||+++|.+..+.....+.++.+.........+  ..+.+|||||..      ..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4579999999999999999999999876544444445455555444444  459999999983      21   112234


Q ss_pred             hhcCCcEEEEEEeCCChhHHH--HHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcC
Q psy12922         76 YYRGAMGILLMYDVTNLESFQ--HLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYS  150 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~  150 (184)
                      ++..+|++++|+|++++.++.  ....|+..+..        ...+.|+++|+||+|+...+++...   ....++...+
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~--------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  176 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKS--------VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK  176 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT--------CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHH--------hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC
Confidence            567889999999999987654  23455555543        2358999999999999776555443   4556666666


Q ss_pred             --CCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        151 --LPFYEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       151 --~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                        ++++++||++|.|++++|++|.+.+.+.+.
T Consensus       177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          177 NPIKFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             SCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence              899999999999999999999998876543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=8.5e-29  Score=169.99  Aligned_cols=162  Identities=14%  Similarity=0.158  Sum_probs=122.0

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      -.++.++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..  +.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCE
Confidence            34678999999999999999999999988877767766666666666677654  7899999999999988888999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-------cC--CCE
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-------YS--LPF  153 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~  153 (184)
                      +++|+|++++....... .+..+.          ..++|+++|+||+|+....   ..........       .+  +++
T Consensus        82 ~i~v~d~~~~~~~~~~~-~l~~~~----------~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  147 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVE-AINHAK----------AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIF  147 (178)
T ss_dssp             EEEEEETTCCCCHHHHH-HHHHHG----------GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred             EEEEEECCCCCcHHHHH-HHHHHH----------hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccE
Confidence            99999998843222221 122222          2478999999999997531   1122222221       12  579


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                      +++||++|.|+++++++|.+.+...+.
T Consensus       148 ~~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          148 CKLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             EECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999999999988776544

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.7e-30  Score=184.80  Aligned_cols=165  Identities=28%  Similarity=0.389  Sum_probs=121.8

Q ss_pred             CCceeEEEEEcCC---------CCchHHHHHHHhh---CcCCCcccccc-ceeEEEEEE--------------EeCCeeE
Q psy12922          4 CNQTYKILVLGDS---------NVGKTCIVHRFCD---ETYYDTYISTI-GIDFKQKII--------------DLDDVPT   56 (184)
Q Consensus         4 ~~~~~~i~i~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~   56 (184)
                      ....+||+++|.+         |||||||+++|..   ..+...+.+++ +.++....+              ..++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4567999999999         9999999999998   55555555554 333332221              1345667


Q ss_pred             EEEEEe-----------------------CCCccccccchHhhhc---------------------CCcEEEEEEeCCCh
Q psy12922         57 KLQIWD-----------------------TAGQERFRTLTTAYYR---------------------GAMGILLMYDVTNL   92 (184)
Q Consensus        57 ~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~   92 (184)
                      .+.+||                       ++|++.|..++..++.                     ++|++++|+|++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            799999                       5566666666666666                     79999999999998


Q ss_pred             --hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-cCCCEEEeecCCCCCHHHHHH
Q psy12922         93 --ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-YSLPFYEVSCKQNINIDEAFL  169 (184)
Q Consensus        93 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~~~~  169 (184)
                        .+++.+..|+..+...      ....++|+++|+||+|+...+.+  .....++.. .+++++++||++|.|++++|+
T Consensus       176 ~~~s~~~~~~~l~~i~~~------~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQ------LAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             ---CHHHHHHHHHHHHHH------HHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHH------hccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence              8999999999888763      12357999999999999764443  456667765 478999999999999999999


Q ss_pred             HHHHHHH
Q psy12922        170 TLARLIR  176 (184)
Q Consensus       170 ~l~~~~~  176 (184)
                      +|.+.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988763

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=184.80  Aligned_cols=160  Identities=19%  Similarity=0.317  Sum_probs=120.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.++|+|+|.+|||||||+++|....+... .++.+..+.  .+...  .+.+.+|||||++.+...+..+++.+|+++
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999998876433 355554433  33334  356999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (184)
                      +|||++++.++.....++..+...      ....++|+++|+||+|+.+....  .......     ...+++++++||+
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilV~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~vSAk  309 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAE------DELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCAT  309 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTCTTCCSSCEEEEECBTT
T ss_pred             EEEECCchHHHHHHHHHHHHHHhh------hccCCCeEEEEEECccCCcccCH--HHHHHHhchhhhhcCCCEEEEEECC
Confidence            999999999999998888777653      23468999999999999764322  2221111     1234579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~~  177 (184)
                      +|.|++++|++|.+.+.+
T Consensus       310 ~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          310 SGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             TTBTHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            999999999999987754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=3.2e-28  Score=180.90  Aligned_cols=163  Identities=18%  Similarity=0.292  Sum_probs=125.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-----ccchHhhhcC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-----RTLTTAYYRG   79 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~~~~~~~~~   79 (184)
                      ..+||+++|.+|||||||++++.+.... ....+.++.+.....+.+.+ .+.+.+||+||++.+     ...+..+++.
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            3589999999999999999999886322 22233333344444444444 567999999999888     6788889999


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--Ccc----ccHHHHHHHHHhcC---
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRA----VQTKDAQMLADNYS---  150 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---  150 (184)
                      +|++++|+|++++.+++.+..|...+....     ...+++|+++|+||+|+..  .+.    ....++..++..++   
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~-----~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLR-----KYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHH-----HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHH-----HhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999998877755544321     1246899999999999976  343    45567788888887   


Q ss_pred             CCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        151 LPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       151 ~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      ++++++||++ .|+.++|..+.+.+
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             eEEEEeeecC-ChHHHHHHHHHHHH
Confidence            7899999999 88999888887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.96  E-value=6e-28  Score=175.23  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=122.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc------hHhhh-
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL------TTAYY-   77 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~-   77 (184)
                      .+.++|+++|++|||||||+++|++..+.....++++.+.....+...+  ..+.+|||||...+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999999877666667777777666666555  45999999998877653      24555 


Q ss_pred             -cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         78 -RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        78 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                       ..+|++++|+|+++.++.   ..|..++..          .++|+++|+||+|+...+.... ....++..++++++++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----------~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~  146 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE----------MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFT  146 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT----------TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEEC
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh----------cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEE
Confidence             589999999999986543   335555543          3799999999999865333332 3677888889999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ||++|.|++++++++.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=3.6e-28  Score=168.35  Aligned_cols=159  Identities=18%  Similarity=0.283  Sum_probs=124.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYY   77 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~   77 (184)
                      ..+.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||...+.      .++..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            34678999999999999999999998766556667777777777776665  459999999988764      3345555


Q ss_pred             c--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         78 R--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        78 ~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      .  .+|++++|+|.++   ++....|+..+..          .+.|+++|+||+|+...+... .....++...++++++
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~  147 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME----------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVP  147 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEE
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh----------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEE
Confidence            4  5899999999875   4455666666654          478999999999986533333 2456777788899999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +||++|.|++++++++.+.+.+.
T Consensus       148 ~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          148 LSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             EEecCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999887654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.96  E-value=1e-28  Score=171.30  Aligned_cols=160  Identities=22%  Similarity=0.277  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC-----------ccccccchHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG-----------QERFRTLTTAY   76 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~   76 (184)
                      ++|+++|.+|||||||+++|.+..+...+.++.+.......  ..    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998887776676654443333  23    489999999           55666677777


Q ss_pred             hcC-CcEEEEEEeCCChhHHHHH-HHHHHH--------HHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH
Q psy12922         77 YRG-AMGILLMYDVTNLESFQHL-NYWLKN--------IEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA  146 (184)
Q Consensus        77 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  146 (184)
                      ++. ++++++|+++.+..++... ..|...        +...      ....++|+++|+||+|+...+   ......++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~---~~~~~~~~  146 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF------LRELDIPTIVAVNKLDKIKNV---QEVINFLA  146 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHH------HHHTTCCEEEEEECGGGCSCH---HHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHH------HHhcCCceEEEeehHhccCcH---HHHHHHHH
Confidence            776 6666666666666666665 445432        2111      123579999999999997654   45567777


Q ss_pred             HhcCCC-------EEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy12922        147 DNYSLP-------FYEVSCKQNINIDEAFLTLARLIREQTRLQ  182 (184)
Q Consensus       147 ~~~~~~-------~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~~  182 (184)
                      ...+++       ++++||++|.|+++++++|.+.+.+.++++
T Consensus       147 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  189 (190)
T 2cxx_A          147 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGRR  189 (190)
T ss_dssp             HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC----
T ss_pred             HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhccc
Confidence            777764       699999999999999999999887765543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=4e-28  Score=166.24  Aligned_cols=155  Identities=18%  Similarity=0.201  Sum_probs=114.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~   76 (184)
                      ...+|+++|.+|||||||+++|.+..+. ....++++.++....+.+++..  +.+|||||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999986542 3344556667777777777754  899999998653221        1235


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      ++.+|++++|+|++++.+++ ...|+..+...       ...++|+++|+||+|+......       ++...+++++++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-------~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~  145 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIAR-------LPAKLPITVVRNKADITGETLG-------MSEVNGHALIRL  145 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHH-------SCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEEC
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHh-------cccCCCEEEEEECccCCcchhh-------hhhccCCceEEE
Confidence            78999999999999887765 34566666652       3457999999999998542111       112246789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||++|.|++++|++|.+.+..
T Consensus       146 SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          146 SARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             CTTTCTTHHHHHHHHHHHC--
T ss_pred             eCCCCCCHHHHHHHHHHHhhh
Confidence            999999999999999887654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=2.3e-27  Score=165.17  Aligned_cols=158  Identities=16%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccchH
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLTT   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~   74 (184)
                      ...++|+++|.+|||||||+++|.+..+.....++.+..........++   .+.+|||||          .+.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            4579999999999999999999998875444444444333333333443   389999999          666777777


Q ss_pred             hhhcCC---cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHH-HHHh
Q psy12922         75 AYYRGA---MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQM-LADN  148 (184)
Q Consensus        75 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~  148 (184)
                      .+++.+   |++++|+|++++.+..... ++..+..          .+.|+++|+||+|+...++...  ....+ ++..
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  166 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID  166 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----------cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc
Confidence            777766   9999999999876655432 2222322          4789999999999976544332  22222 3333


Q ss_pred             cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        149 YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .+++++++||++|.|+++++++|.+.+.
T Consensus       167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          167 PEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            4678999999999999999999988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.95  E-value=7.7e-28  Score=174.43  Aligned_cols=151  Identities=17%  Similarity=0.176  Sum_probs=118.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----------chHhhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----------LTTAYY   77 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~   77 (184)
                      .+|+++|.+|||||||+|+|++........++++.+.....+...+.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998776677788888888888877776  599999999876654          445666


Q ss_pred             --cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         78 --RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        78 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                        ..+|++++|+|+++.++...   +...+.          ..+.|+++|+||+|+...+.... ....++..+++++++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~---l~~~l~----------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~  145 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLY---LTSQLF----------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIP  145 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHH---HHHHHT----------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEE
T ss_pred             hhCCCCEEEEEeeCCCchhHHH---HHHHHH----------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEE
Confidence              88999999999998654433   233332          24789999999999864333222 245577788999999


Q ss_pred             eecCCCCCHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~  174 (184)
                      +||++|.|+++++++|.+.
T Consensus       146 ~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          146 IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CBGGGTBSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=2.2e-27  Score=160.33  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-------ccchHhhhcC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-------RTLTTAYYRG   79 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~   79 (184)
                      .||+++|.+|||||||++++.+..+. ....++++.+.....+..++.  .+.+|||||...+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987653 334455555666666666665  4899999998763       3445667899


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeec
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSC  158 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  158 (184)
                      +|++++|+|++++.+..  ..++.....         ..+.|+++|+||+|+.+..    .....++ ..++ +++++||
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~---------~~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa  143 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLR---------RKGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSS  143 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHH---------HHTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBT
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHH---------hcCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEec
Confidence            99999999999753322  222222222         1478999999999997542    2223334 5677 8999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLI  175 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~  175 (184)
                      ++|.|+++++++|.+.+
T Consensus       144 ~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          144 EHARGLEELLEAIWERL  160 (161)
T ss_dssp             TTTBSHHHHHHHHHHHC
T ss_pred             ccCCChHHHHHHHHHhC
Confidence            99999999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.95  E-value=7.2e-28  Score=191.15  Aligned_cols=163  Identities=20%  Similarity=0.315  Sum_probs=123.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEE------EEe--CCeeEEEEEEeCCCccccccchHh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI------IDL--DDVPTKLQIWDTAGQERFRTLTTA   75 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~G~~~~~~~~~~   75 (184)
                      ....+||+++|.+|||||||++++++..+...+.++.+.++....      +..  .+....+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            356799999999999999999999998887777788777666542      111  234567999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      +++.+|++++|+|+++.   +....|+..+...        ..+.|+++|+||+|+...+.+........+...++++++
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~--------~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  186 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY--------GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHR  186 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHH--------SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEE
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHh--------CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEE
Confidence            99999999999999765   5567788888764        347999999999999887777778888888888999999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +||++|.|+++++++|.+.+.+
T Consensus       187 vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          187 ISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             CCC-----CTTHHHHHHHHHTC
T ss_pred             EecCcccCHHHHHHHHHHHHhc
Confidence            9999999999999999988764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.95  E-value=1.9e-27  Score=173.58  Aligned_cols=153  Identities=20%  Similarity=0.252  Sum_probs=115.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhhc-
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYYR-   78 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-   78 (184)
                      ..++|+++|++|||||||+++|++........++++.+.....+  .. ...+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            45899999999999999999999876545555655555444443  33 4459999999988775      34455665 


Q ss_pred             -CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         79 -GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        79 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                       .+|++++|+|+++.++   ...|..++..          .++|+++|+||+|+...+... .....++..++++++++|
T Consensus        79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~----------~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~S  144 (272)
T 3b1v_A           79 QRADSILNVVDATNLER---NLYLTTQLIE----------TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATS  144 (272)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH----------TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECB
T ss_pred             CCCCEEEEEecCCchHh---HHHHHHHHHh----------cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEE
Confidence             6999999999987644   3445555554          478999999999986433333 245677788899999999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLI  175 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~  175 (184)
                      |++|.|++++++++.+.+
T Consensus       145 A~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSC
T ss_pred             ccCCCCHHHHHHHHHHHH
Confidence            999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=2.7e-26  Score=170.53  Aligned_cols=162  Identities=14%  Similarity=0.090  Sum_probs=124.2

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc----------cc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR----------TL   72 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~   72 (184)
                      ....-.|+++|.+|||||||+|+|.+..+. ....+.++..........+ ....+.+|||||...+.          ..
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            345678999999999999999999998764 2334444444444444444 13459999999985543          45


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--  150 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--  150 (184)
                      ...+++.+|++++|+|++++.+......|+..+..          .+.|+++|+||+|+.............+....+  
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~  155 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPEL  155 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTC
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----------cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCC
Confidence            56778899999999999988777777666666654          478999999999997445555566677777765  


Q ss_pred             CCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        151 LPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       156 ~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          156 TEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            78999999999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.95  E-value=1.6e-27  Score=174.56  Aligned_cols=155  Identities=17%  Similarity=0.245  Sum_probs=119.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----------chHh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----------LTTA   75 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~   75 (184)
                      ++++|+++|.+|||||||+|+|++........++++.+.....+...+..  +.+|||||...+..          ....
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHH
Confidence            46899999999999999999999988766777777778877777766654  88999999877652          1233


Q ss_pred             hh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922         76 YY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF  153 (184)
Q Consensus        76 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      ++  ..+|++++|+|+++.+..   ..+...+..          .++|+++|+||+|+...+.... ....++..+++++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----------~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~  145 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERN---LYLTLQLLE----------LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPV  145 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----------HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCE
T ss_pred             HHhhcCCCEEEEEecCCChHHH---HHHHHHHHh----------cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCE
Confidence            33  689999999999876543   334444444          2789999999999864333222 2466777889999


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +++||++|.|+++++++|.+.+.
T Consensus       146 i~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          146 IPLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             EECCCGGGHHHHHHHHHHHTCCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999877543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.2e-27  Score=177.06  Aligned_cols=155  Identities=15%  Similarity=0.211  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc---chHhhhcCCcE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT---LTTAYYRGAMG   82 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~   82 (184)
                      ||+++|..|||||||++++.+.....   ...++.+.++..  +  . ..+++++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654322   245566655543  2  2 346799999999999975   35889999999


Q ss_pred             EEEEEeCCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-------ccccHHHHHHHHHh----c
Q psy12922         83 ILLMYDVTNL--ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-------RAVQTKDAQMLADN----Y  149 (184)
Q Consensus        83 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~  149 (184)
                      +++|||++++  +.......|+..+..        ..+++|+++|+||+|+...       +++......++++.    .
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~--------~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~  147 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYK--------VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV  147 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHH--------HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhh--------cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence            9999999987  333333444444443        2468999999999999764       34555556667765    6


Q ss_pred             CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        150 SLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       150 ~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +++|++|||++ .++.++|..+.+.+.+
T Consensus       148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          148 QVSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             CceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence            78999999998 5899999999876553

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.94  E-value=1.1e-26  Score=169.89  Aligned_cols=156  Identities=16%  Similarity=0.199  Sum_probs=123.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc------chHhhh--c
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT------LTTAYY--R   78 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~   78 (184)
                      .++|+++|++|||||||+++|++..+.....++.+.+.....+...+..  +.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            5899999999999999999999987766777788888877777777765  99999999887665      455555  6


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      .+|++++|+|+++..   ....+..++...         ...|+++|+||+|+...+..... ...+...++++++++||
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~---------~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa  147 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEM---------EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNA  147 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHT---------TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBG
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhc---------CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEe
Confidence            899999999998753   333444455441         23999999999998543322222 66777888999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++|.|++++++++.+.+..
T Consensus       148 ~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999887653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=5.9e-26  Score=157.82  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=109.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccchH
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLTT   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~   74 (184)
                      ...++|+++|.+|||||||+++|.+.... ...++.+............   .+.+|||||          .+.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45689999999999999999999997732 2233333233222222332   378999999          555666666


Q ss_pred             hhhcCC---cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--cccHHHHHHHHHhc
Q psy12922         75 AYYRGA---MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--AVQTKDAQMLADNY  149 (184)
Q Consensus        75 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~  149 (184)
                      .+++.+   |++++|+|++++.+.... .....+..          .+.|+++|+||+|+....  .........++...
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS----------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            776655   999999999875333222 22233333          278999999999997533  23334455555553


Q ss_pred             -CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        150 -SLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                       +++++++||++|.|+++++++|.+.+.+
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence             4799999999999999999999987753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=5.9e-26  Score=176.08  Aligned_cols=162  Identities=17%  Similarity=0.159  Sum_probs=116.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccch
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTLT   73 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~   73 (184)
                      +..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+..++..  +.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence            35689999999999999999999987753 4455666667666667677765  899999997          3333333


Q ss_pred             H-hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHHH----
Q psy12922         74 T-AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLAD----  147 (184)
Q Consensus        74 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~----  147 (184)
                      . .+++.+|++++|+|++++.+.++. .|+..+..          .++|+++|+||+|+.+.......+. ..+..    
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~  319 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF  319 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc
Confidence            2 467889999999999998776665 45555543          4799999999999976544332222 22222    


Q ss_pred             hcCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        148 NYSLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       148 ~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ..+++++++||++|.|++++++.+.+.+.+..
T Consensus       320 ~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          320 LDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            33689999999999999999999998877543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=3.8e-26  Score=162.26  Aligned_cols=163  Identities=15%  Similarity=0.167  Sum_probs=108.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC--CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTL   72 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~   72 (184)
                      ...++|+|+|.+|||||||+++|.+...  .....+.++.......+. ......+.+|||||.          +.+...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4568999999999999999999999763  233333334343333332 122345999999994          334455


Q ss_pred             hHhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHH
Q psy12922         73 TTAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLAD  147 (184)
Q Consensus        73 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~  147 (184)
                      ...++..   +|++++|+|++++.+. ....++..+..          .++|+++|+||+|+....+..  .....+...
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~----------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~  174 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP----------TGKPIHSLLTKCDKLTRQESINALRATQKSLD  174 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG----------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh----------cCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence            5566655   7889999999875332 22333444432          478999999999997643321  112222222


Q ss_pred             h-------cCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        148 N-------YSLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       148 ~-------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      .       .+++++++||++|.|+++++++|.+.+....
T Consensus       175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            2       5678999999999999999999999886543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=1.4e-25  Score=174.77  Aligned_cols=157  Identities=16%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch--------Hhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT--------TAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~   76 (184)
                      ..++|+++|.+|||||||+|+|.+... .....++++.+.....+.+++..  +.+|||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            358999999999999999999998753 34556667777777777777754  9999999987655433        346


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      +..+|++++|+|++++.+.+....+...+..       .  .+.|+++|+||+|+........   ..+.....++++++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-------l--~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~v  377 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAA-------H--PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGI  377 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-------C--TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEEC
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHh-------c--CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEE
Confidence            7899999999999998776554444433333       1  2799999999999976544322   23333323789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ||++|.|+++++++|.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999998876

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.2e-24  Score=164.82  Aligned_cols=162  Identities=15%  Similarity=0.118  Sum_probs=121.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTA   75 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~   75 (184)
                      ...++|+++|.+|||||||+++|.+........+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998775444444555455555444444  459999999974321         11223


Q ss_pred             hhcCCcEEEEEEeCCChh--HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922         76 YYRGAMGILLMYDVTNLE--SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF  153 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      +...+|++++|+|++++.  +++....|+..+...       . .+.|+++|+||+|+......  .....++...++++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-------~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~  312 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-------F-KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNP  312 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-------T-TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCC
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh-------c-CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCe
Confidence            445789999999998876  677777888887763       1 28999999999999764332  34455666778999


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +++||++|+|+++++++|.+.+...
T Consensus       313 ~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          313 IKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=2.3e-25  Score=164.85  Aligned_cols=159  Identities=14%  Similarity=0.126  Sum_probs=110.2

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------ccc
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRT   71 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~   71 (184)
                      |+..-+..+|+++|.+|||||||+|+|.+..+. ....+.++.......+...  ...+.+|||||...        +..
T Consensus         1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~   78 (301)
T 1wf3_A            1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQ   78 (301)
T ss_dssp             --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHH
T ss_pred             CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHH
Confidence            677777889999999999999999999997764 2333444433333333333  44699999999765        334


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHHHHH-HHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-c
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWL-KNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-Y  149 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~  149 (184)
                      ....+++.+|++++|+|++++.+..  ..|+ ..+..        ...+.|+++|+||+|+......    ....... .
T Consensus        79 ~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~--------~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~  144 (301)
T 1wf3_A           79 EVYEALADVNAVVWVVDLRHPPTPE--DELVARALKP--------LVGKVPILLVGNKLDAAKYPEE----AMKAYHELL  144 (301)
T ss_dssp             HHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGG--------GTTTSCEEEEEECGGGCSSHHH----HHHHHHHTS
T ss_pred             HHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHh--------hcCCCCEEEEEECcccCCchHH----HHHHHHHhc
Confidence            4556789999999999998764433  2333 34433        1247999999999998754331    1222222 2


Q ss_pred             -CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        150 -SLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                       ..+++++||++|.|+++++++|.+.+
T Consensus       145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          145 PEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence             34789999999999999999997754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=2.5e-25  Score=173.47  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=118.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc-CCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccch
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLT   73 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~   73 (184)
                      +..++|+++|.+|+|||||+++|.+.. ......++++.+.....+..++.  .+.+|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            456899999999999999999999765 33445566666665566666766  499999999          45555544


Q ss_pred             H-hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc---
Q psy12922         74 T-AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY---  149 (184)
Q Consensus        74 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---  149 (184)
                      . .+++.+|++++|+|++++.. +....+...+..          .++|+++|+||+|+...+.....+..+.+...   
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  339 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF  339 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc
Confidence            3 46789999999999987543 233444555543          46999999999999876555555555544443   


Q ss_pred             --CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        150 --SLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       150 --~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                        +++++++||++|.|++++|+++.+.+.+..
T Consensus       340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          340 LDYAPILFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence              589999999999999999999999886654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=3.5e-26  Score=161.97  Aligned_cols=148  Identities=19%  Similarity=0.262  Sum_probs=104.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcC-
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG-   79 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-   79 (184)
                      ....++|+++|++|||||||+++|.+..+..   .+.++.+..+         ....+.+|||||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            3567999999999999999999999977643   2333333222         34458999999999998888888877 


Q ss_pred             ---CcEEEEEEeCC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc------HHHHHHHHHhc
Q psy12922         80 ---AMGILLMYDVT-NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ------TKDAQMLADNY  149 (184)
Q Consensus        80 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~  149 (184)
                         +|++++|+|++ +++++.....|+..+......   ....++|+++|+||+|+...+...      ..+...++...
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES---SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH---HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccc---cccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence               89999999999 888888888887777653100   034689999999999998755443      33455565566


Q ss_pred             CCCEEEeecCCCCC
Q psy12922        150 SLPFYEVSCKQNIN  163 (184)
Q Consensus       150 ~~~~~~~Sa~~~~g  163 (184)
                      +++++++||++|.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            66777888887764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.92  E-value=3.7e-25  Score=165.95  Aligned_cols=161  Identities=12%  Similarity=0.189  Sum_probs=120.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----ccccchHhhhc---CC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----RFRTLTTAYYR---GA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~---~~   80 (184)
                      .+|+++|.+|||||||+++|++..+.....+.++.......+.+++ ...+.+||+||..    .+..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            3689999999999999999998765434444455455555555554 1359999999953    34445555554   49


Q ss_pred             cEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CCEEE
Q psy12922         81 MGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LPFYE  155 (184)
Q Consensus        81 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  155 (184)
                      |++++|+|+++   +++++....|..++..+.     ....++|+++|+||+|+....    .....+...+.  +++++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~-----~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~  308 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYN-----LRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFP  308 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-----SSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhh-----hhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEE
Confidence            99999999998   778888888988888742     113589999999999987532    23455566655  68999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +||+++.|+++++++|.+.+.+.
T Consensus       309 iSA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          309 ISAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             CSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             EECCCCcCHHHHHHHHHHHHhhC
Confidence            99999999999999999987653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.92  E-value=1.2e-24  Score=169.67  Aligned_cols=153  Identities=19%  Similarity=0.218  Sum_probs=116.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-cccc--------chHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-RFRT--------LTTAY   76 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~~--------~~~~~   76 (184)
                      .++|+++|.||||||||+|+|++.++ .....++++.++....+.+++..  +.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999999764 34556677777777777777765  8999999987 5442        23457


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      ++.+|++++|+|++++.+.++... +..+            .++|+++|+||+|+...  ........+. ..+++++++
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l------------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~i  384 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRKI-LERI------------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKI  384 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHH-HHHH------------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEE
T ss_pred             hhcccEEEEEecCCCCCCHHHHHH-HHHh------------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEE
Confidence            789999999999998876655322 2221            36899999999999753  2333333332 245789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||++|.|+++++++|.+.+..
T Consensus       385 SAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHTHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999997653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=2.3e-25  Score=171.15  Aligned_cols=157  Identities=19%  Similarity=0.191  Sum_probs=115.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------hHh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------TTA   75 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~   75 (184)
                      ....++|+|+|.+|+|||||+++|++..+ .....+.++.+.....+.+.+.. .+.+|||||+..+...       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            35679999999999999999999998776 33445566666666777666542 5999999998876544       345


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      ++..+|++++|+|++..   .....|+..+..          .+.|+++|+||+|+......  .....++...++++++
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----------~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~  174 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKE----------MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLL  174 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHH----------TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCC
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----------cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEE
Confidence            78899999999998332   334566777765          37899999999999875444  4456666677899999


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +||++|.|+++++++|.+.+.
T Consensus       175 vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          175 VSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CSSCCTTSTTTHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHhhh
Confidence            999999999999999998773

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=5.7e-24  Score=165.09  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------cccchHhhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------FRTLTTAYY   77 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~   77 (184)
                      .+|+++|.||||||||+|+|.+.... ....++++.+.....+...+..  +.+|||||...         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987642 4556677777777777777765  89999999653         233456678


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHHHhcCC-CEEE
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLADNYSL-PFYE  155 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~  155 (184)
                      +.+|++++|+|++++.+..+  .++......         .++|+++|+||+|+...  . .... .++. .+++ ++++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~  144 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK---------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIP  144 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH---------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEE
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEE
Confidence            99999999999987644322  122222221         36899999999997531  1 1122 3333 4566 7899


Q ss_pred             eecCCCCCHHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +||++|.|++++++++.+.+.+
T Consensus       145 iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          145 VSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeccCCCCHHHHHHHHHHhccc
Confidence            9999999999999999988864

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.91  E-value=2e-23  Score=163.42  Aligned_cols=156  Identities=13%  Similarity=0.154  Sum_probs=110.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc-------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET-------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY   77 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~   77 (184)
                      .+.++|+++|++++|||||+++|++..       ...+..+..+.+.....+.+++  ..+.+|||||++.|.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            457999999999999999999999866       2334444455554444455555  4599999999999988888889


Q ss_pred             cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHhc---
Q psy12922         78 RGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADNY---  149 (184)
Q Consensus        78 ~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~---  149 (184)
                      ..+|++++|+|+++   +.+.+.+    ..+..          .++|+++|+||+|+.....  ....+...+....   
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~~----------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~  160 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHM----LILDH----------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL  160 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHH----HHHHH----------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred             hhCCEEEEEEecCCCccHHHHHHH----HHHHH----------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence            99999999999987   3333332    22332          3688899999999975321  1223344455444   


Q ss_pred             -CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        150 -SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                       +++++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          161 KNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             578999999999999999999998775

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.91  E-value=1.9e-24  Score=167.88  Aligned_cols=153  Identities=16%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch--------Hhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT--------TAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~   76 (184)
                      ..++|+++|.+|||||||+|+|++..+. ....++++.++....+.+++.+  +.+|||||...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence            3589999999999999999999986542 4445666666666666677765  8999999976654332        235


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      +..+|++++|+|++++.+... ..++..+            ...|+++|+||+|+........  ...+  ..+.+++++
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------------~~~piivV~NK~Dl~~~~~~~~--~~~~--~~~~~~i~i  363 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV------------KHRPLILVMNKIDLVEKQLITS--LEYP--ENITQIVHT  363 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH------------TTSCEEEEEECTTSSCGGGSTT--CCCC--TTCCCEEEE
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc------------cCCcEEEEEECCCCCcchhhHH--HHHh--ccCCcEEEE
Confidence            788999999999998765443 3344333            2369999999999976443321  1111  135689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||++|.|+++++++|.+.+..
T Consensus       364 SAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          364 AAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             BTTTTBSHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999987754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.91  E-value=4.5e-23  Score=156.03  Aligned_cols=162  Identities=16%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             eeE-EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc---------ccccchHhh
Q psy12922          7 TYK-ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE---------RFRTLTTAY   76 (184)
Q Consensus         7 ~~~-i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~   76 (184)
                      .++ |+++|.+|||||||+|+|++..+.....++++.+.....+.+++..  +.+|||+|.-         .+...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 9999999999999999999977655556666667777777788754  8999999952         122222 24


Q ss_pred             hcCCcEEEEEEeCCChh--HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHHHhc---C
Q psy12922         77 YRGAMGILLMYDVTNLE--SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLADNY---S  150 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~  150 (184)
                      +..+|++++|+|++++.  ..+....+...+..       ....+.|+++|+||+|+....... ......++...   +
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-------l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~  327 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-------IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI  327 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-------HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-------hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence            68899999999999876  45555555555554       233578999999999987533111 11222233333   3


Q ss_pred             CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        151 LPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      .+++++||++|.|+++++++|.+.+...
T Consensus       328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          328 FDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            4689999999999999999999877653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=1e-22  Score=156.52  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=113.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEE-------EEE---------Ee---CCeeEEEEEEeCC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQ-------KII---------DL---DDVPTKLQIWDTA   64 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~l~D~~   64 (184)
                      .+..++|+++|++|+|||||+++|++............ ....       ..+         ..   ......+.+||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            45679999999999999999999998543221100000 0000       000         00   1112579999999


Q ss_pred             CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHH
Q psy12922         65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDA  142 (184)
Q Consensus        65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~  142 (184)
                      |++.|.......+..+|++++|+|++++.++.....++..+...         ...|+++|+||+|+.+..+..  ..+.
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---------~~~~iivviNK~Dl~~~~~~~~~~~~i  154 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---------GVKNLIIVQNKVDVVSKEEALSQYRQI  154 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---------TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---------CCCCEEEEEECccccchHHHHHHHHHH
Confidence            99999998888999999999999999876666666766666553         235899999999997632221  1222


Q ss_pred             HHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        143 QMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       143 ~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ..+....   +++++++||++|.|+++++++|.+.+.
T Consensus       155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            2333222   578999999999999999999988664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=4.1e-23  Score=160.30  Aligned_cols=161  Identities=18%  Similarity=0.138  Sum_probs=109.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-----------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-----------   72 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------   72 (184)
                      +..++|+++|++|||||||+|+|.+... .....++++.+.....+.+++..  +.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence            3458999999999999999999998764 23445556666666667777765  889999997433221           


Q ss_pred             h-HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH-HH----H
Q psy12922         73 T-TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ-ML----A  146 (184)
Q Consensus        73 ~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~  146 (184)
                      . ..+++.+|++++|+|++++.+..+. .+...+..          .++|+++|+||+|+.+.......... .+    .
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  324 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY  324 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc
Confidence            1 2456789999999999876554432 22233332          47899999999999765443332221 22    2


Q ss_pred             HhcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        147 DNYSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       147 ~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ...+++++++||++|.|++++++.+.+.+.+.
T Consensus       325 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          325 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            23357999999999999999999999877654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=8e-23  Score=157.29  Aligned_cols=159  Identities=15%  Similarity=0.186  Sum_probs=102.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc---CCCcccc--ccceeEEEEEEEe-------------C--C----eeEEEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET---YYDTYIS--TIGIDFKQKIIDL-------------D--D----VPTKLQI   60 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   60 (184)
                      ...++|+++|+.++|||||+++|++..   +..+..+  +....+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            457999999999999999999998543   3334444  3332333322211             1  1    1267999


Q ss_pred             EeCCCccccccchHhhhcCCcEEEEEEeCCCh----hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922         61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA  136 (184)
Q Consensus        61 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (184)
                      |||||++.|.......+..+|++++|+|++++    .+.+.+.    .+...         ...|+++|+||+|+.....
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l---------~~~~iivv~NK~Dl~~~~~  152 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL---------GIDKIIIVQNKIDLVDEKQ  152 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT---------TCCCEEEEEECTTSSCTTT
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc---------CCCeEEEEEEccCCCCHHH
Confidence            99999999887777777889999999999954    3333332    22221         2358999999999976432


Q ss_pred             --ccHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        137 --VQTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       137 --~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                        ....++..+...   .+++++++||++|.|+++++++|.+.+.
T Consensus       153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence              223445555554   3678999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.90  E-value=8.2e-23  Score=162.84  Aligned_cols=159  Identities=20%  Similarity=0.217  Sum_probs=111.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCc--CCC-------------ccccccceeEEEEEEEe---CCeeEEEEEEeCCCcc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDET--YYD-------------TYISTIGIDFKQKIIDL---DDVPTKLQIWDTAGQE   67 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~   67 (184)
                      ...+|+|+|++++|||||+++|+...  ...             +.....+.......+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999998632  110             00111222212222222   4556889999999999


Q ss_pred             ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH
Q psy12922         68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD  147 (184)
Q Consensus        68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  147 (184)
                      .|......+++.+|++++|+|++++...+....|.....           .++|+++|+||+|+....  ......++..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----------~~ipiIvViNKiDl~~a~--~~~v~~ei~~  149 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----------MDLEVVPVLNKIDLPAAD--PERVAEEIED  149 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----------TTCEEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----------CCCCEEEeeeccCccccc--HHHHHHHHHH
Confidence            999888889999999999999998776666666665543           368999999999997633  2233455666


Q ss_pred             hcCC---CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        148 NYSL---PFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       148 ~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .+++   .++++||++|.|+++++++|.+.+..
T Consensus       150 ~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          150 IVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             HTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             HhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            6665   48999999999999999999887643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=145.24  Aligned_cols=162  Identities=16%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc--ccceeEEEEEEEeCCeeEEEEEEeCCCcc-----------cccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS--TIGIDFKQKIIDLDDVPTKLQIWDTAGQE-----------RFRT   71 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----------~~~~   71 (184)
                      +..++|+++|.+|||||||+++|++..+.....+  +.+..+........+..  +.+|||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHH
Confidence            5679999999999999999999999877555544  45555665666666654  8999999943           3334


Q ss_pred             chHhhhcCCcEEEEEEeCCChhH--HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc------HHHHH
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLES--FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ------TKDAQ  143 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~  143 (184)
                      ....+++.+|++++|+|+++...  ...+..+...+..         ....|+++|+||+|+.......      ...+.
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~---------~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~  175 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE---------RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQ  175 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH---------HHGGGEEEEEECGGGC------------CHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh---------hccceEEEEEeCCccCCcccHHHHHHhchHHHH
Confidence            44455677899999999875433  2222232222222         1246999999999986543332      23567


Q ss_pred             HHHHhcCCCEEEeecCCC-----CCHHHHHHHHHHHHHH
Q psy12922        144 MLADNYSLPFYEVSCKQN-----INIDEAFLTLARLIRE  177 (184)
Q Consensus       144 ~~~~~~~~~~~~~Sa~~~-----~gv~~~~~~l~~~~~~  177 (184)
                      .+....+..++.+++..+     .++.++++.+.+.+.+
T Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          176 DLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            778888888888877754     6888999888777654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.90  E-value=1.5e-22  Score=161.18  Aligned_cols=161  Identities=19%  Similarity=0.246  Sum_probs=114.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-------------ccccccceeE--EEEEEEe-CCeeEEEEEEeCCC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-------------TYISTIGIDF--KQKIIDL-DDVPTKLQIWDTAG   65 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-------------~~~~~~~~~~--~~~~~~~-~~~~~~~~l~D~~G   65 (184)
                      .+...+|+++|++++|||||+++|+...  ...             +.....+...  ....+.. ++..+.+++|||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            3566899999999999999999998631  110             0011111111  1112221 45567899999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML  145 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (184)
                      +..|.......++.+|++++|+|++++...+....|.....           .++|+++|+||+|+....  ......++
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----------~~ipiIvviNKiDl~~a~--~~~v~~el  149 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----------QDLVIIPVINKIDLPSAD--VDRVKKQI  149 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----------TTCEEEEEEECTTSTTCC--HHHHHHHH
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----------CCCCEEEEEeccCccccC--HHHHHHHH
Confidence            99998888888999999999999998877777766665443           378999999999997532  22334556


Q ss_pred             HHhcCC---CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        146 ADNYSL---PFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       146 ~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ...+++   .++++||++|.|+++++++|.+.+..
T Consensus       150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            666666   48999999999999999999887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=9.3e-23  Score=151.02  Aligned_cols=156  Identities=15%  Similarity=0.141  Sum_probs=106.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcc---------ccccchHh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE---------RFRTLTTA   75 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~   75 (184)
                      +..+|+++|++|||||||+|+|.+..+. ....+.++.......+...+  ..+.+|||||..         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3458999999999999999999987653 22233333322222333333  458999999986         23334456


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEE
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFY  154 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~  154 (184)
                      +++.+|++++|+|+++   +.....++.....         ..+.|+++|+||+|+.............+....+. .++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---------~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i  152 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR---------EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV  152 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH---------SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---------hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE
Confidence            6788999999999976   2222233333222         25789999999999876333333444556566665 689


Q ss_pred             EeecCCCCCHHHHHHHHHHHH
Q psy12922        155 EVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      ++||++|.|++++++++.+.+
T Consensus       153 ~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          153 PISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTC
T ss_pred             EEECCCCCCHHHHHHHHHHhC
Confidence            999999999999999988653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=7.5e-23  Score=148.67  Aligned_cols=162  Identities=15%  Similarity=0.137  Sum_probs=106.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc-CCCccccc-cceeEEEEEEEeCCeeEEEEEEeCCCccccccc----------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYIST-IGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----------   72 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------   72 (184)
                      ...++|+|+|.+|||||||+++|++.. +.....+. ++...........+.  .+.+|||||...+...          
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            456899999999999999999999876 44344443 455555555555554  4999999997654322          


Q ss_pred             -hHhhhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe-CCCCCCCccccH-------HHH
Q psy12922         73 -TTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN-KSDVKTQRAVQT-------KDA  142 (184)
Q Consensus        73 -~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~  142 (184)
                       ...+++.+|++++|+|+++... ......++..+..        .....|.++|+| |+|+.... ...       ..+
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~--------~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~  168 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG--------EDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKAL  168 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC--------GGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC--------chhhccEEEEEEcccccCCcc-HHHHHHhcchHHH
Confidence             2236688999999999986221 1222233333321        112456677776 99997432 211       223


Q ss_pred             HHHHHhcCCC---E--EEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        143 QMLADNYSLP---F--YEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       143 ~~~~~~~~~~---~--~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ..+....+..   +  +++||++|.|++++|++|.+.+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          169 SKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            3455555432   2  789999999999999999988765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.90  E-value=1.6e-22  Score=156.73  Aligned_cols=154  Identities=14%  Similarity=0.094  Sum_probs=105.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD   52 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   52 (184)
                      ....++|+++|++++|||||+++|+....                               ..+..+..+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            45679999999999999999999965321                               11222345555555555455


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---H---HHHHHHHHHHHHhcccCCCCCCCCCe-EEEE
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---F---QHLNYWLKNIEEVGCNSNQNASPDVV-KVLA  125 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv  125 (184)
                      +  ..+.+|||||++.|.......+..+|++++|+|++++..   +   ......+..+..          .++| +++|
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----------~~v~~iIvv  161 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----------AGVKHLIVL  161 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----------cCCCeEEEE
Confidence            4  469999999999998888888999999999999997532   1   122222233332          3455 9999


Q ss_pred             EeCCCCCCCc------cccHHHHHHHHHhcC------CCEEEeecCCCCCHHHHHH
Q psy12922        126 GNKSDVKTQR------AVQTKDAQMLADNYS------LPFYEVSCKQNINIDEAFL  169 (184)
Q Consensus       126 ~nK~D~~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~~~~  169 (184)
                      +||+|+....      +....+...+....+      ++++++||++|.|+.++.+
T Consensus       162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            9999985321      111222334444443      5799999999999998654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.89  E-value=1e-22  Score=156.84  Aligned_cols=160  Identities=17%  Similarity=0.196  Sum_probs=110.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCc---CCCccccccce--eEEEEEEEe-------------C--Ce----eEEEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDET---YYDTYISTIGI--DFKQKIIDL-------------D--DV----PTKLQ   59 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~~----~~~~~   59 (184)
                      ....++|+++|++++|||||+++|++..   +..+..+..+.  .+....+..             +  +.    ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998532   33344443333  333322211             1  11    26799


Q ss_pred             EEeCCCccccccchHhhhcCCcEEEEEEeCCCh----hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        60 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +|||||++.|.......+..+|++++|+|++++    .+.+.+.    .+...         ...|+++|+||+|+....
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~---------~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII---------GQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH---------TCCCEEEEEECGGGSCHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc---------CCCcEEEEEECccCCCHH
Confidence            999999998887777777889999999999954    3333332    22221         235899999999997633


Q ss_pred             c--ccHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        136 A--VQTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       136 ~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .  ....++..+...   .+++++++||++|.|+++++++|.+.+.
T Consensus       154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            2  122334444443   3678999999999999999999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=1.7e-23  Score=162.33  Aligned_cols=151  Identities=19%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcc--------ccccchHhhhc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE--------RFRTLTTAYYR   78 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~   78 (184)
                      .+|+++|.+|||||||+|+|.+.... ....+.++.+.........+.  .+.+|||||..        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999986653 334455555555555444444  49999999975        45556677889


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEee
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVS  157 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S  157 (184)
                      .+|++++|+|+.++.+..+  .++..+..         ..++|+++|+||+|+.......    .++. .+++ .++++|
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~---------~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iS  145 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY---------RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPIS  145 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT---------TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECB
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH---------HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEe
Confidence            9999999999988755433  23333322         3578999999999986532111    1111 3454 789999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~~~  176 (184)
                      |++|.|++++++++.+.+.
T Consensus       146 A~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          146 GTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             TTTTBTHHHHHHHHHHTGG
T ss_pred             CcCCCChHHHHHHHHHhcC
Confidence            9999999999999988765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=7.4e-23  Score=153.99  Aligned_cols=121  Identities=12%  Similarity=0.175  Sum_probs=93.1

Q ss_pred             eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922         54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV  123 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  123 (184)
                      ..+.+++|||+|++.++..|..++++++++++|+|++          +.+++++...|+..+...      ....++|++
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~------~~~~~~pii  254 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ------PCFEKTSFM  254 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC------GGGSSCEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc------cccCCCeEE
Confidence            5678999999999999999999999999999999998          778899999988888653      224689999


Q ss_pred             EEEeCCCCCCCcc--c-------------------cHHHHHHHHHh----------------cCCCEEEeecCCCCCHHH
Q psy12922        124 LAGNKSDVKTQRA--V-------------------QTKDAQMLADN----------------YSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       124 vv~nK~D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||+||+|+...+.  .                   ...++..++..                ..+.+++|||+++.||++
T Consensus       255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~  334 (354)
T 2xtz_A          255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKK  334 (354)
T ss_dssp             EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHH
T ss_pred             EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHH
Confidence            9999999843211  0                   12344444321                124568999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12922        167 AFLTLARLIREQTR  180 (184)
Q Consensus       167 ~~~~l~~~~~~~~~  180 (184)
                      +|+++.+.+.....
T Consensus       335 vF~~v~~~I~~~~l  348 (354)
T 2xtz_A          335 TFKLVDETLRRRNL  348 (354)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998876443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.89  E-value=2.6e-23  Score=152.22  Aligned_cols=160  Identities=16%  Similarity=0.225  Sum_probs=93.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC-Ccc-------ccccceeEEEEEEEeCCeeEEEEEEeCCCccc-------c
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTY-------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-------F   69 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~   69 (184)
                      ...++|+++|.+|+|||||+|+|+..... ..+       .++.+.+.....+..++..+.+.+|||||...       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            45799999999999999999998876543 232       45556666666665566667899999999632       2


Q ss_pred             ccch-------Hhhhc-------------CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         70 RTLT-------TAYYR-------------GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        70 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      ..+.       ..++.             .+|+++++++.++.........++..+.           .++|+++|+||+
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~-----------~~~pvi~V~nK~  154 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----------EKVNIIPLIAKA  154 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT-----------TTSCEEEEESSG
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh-----------ccCCEEEEEecc
Confidence            2222       22333             2678999997765221122223333331           279999999999


Q ss_pred             CCCCCccccH--HHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        130 DVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       130 D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      |+....+...  ....+.....+++++.+||++++|+++++++|.+.+
T Consensus       155 D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          155 DTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            9865333322  234555567789999999999999999998887643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=9e-23  Score=153.57  Aligned_cols=119  Identities=13%  Similarity=0.176  Sum_probs=97.3

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN----------LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      .+.+++||++|++.++..|..++++++++|+|+|+++          .+++++...|+..+...      ....++|++|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~------~~~~~~piiL  265 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN------KWFTDTSIIL  265 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC------GGGTTSEEEE
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC------ccccCCcEEE
Confidence            4569999999999999999999999999999999998          45788888888888653      2346799999


Q ss_pred             EEeCCCCCCCc---------------cccHHHHHHHHH-----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        125 AGNKSDVKTQR---------------AVQTKDAQMLAD-----------NYSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       125 v~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      |+||+|+...+               .....++..++.           ..++.+++|||++|.||+++|+++.+.+...
T Consensus       266 v~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          266 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             EEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            99999984321               244556666665           3467899999999999999999999988754


Q ss_pred             H
Q psy12922        179 T  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus       346 ~  346 (353)
T 1cip_A          346 N  346 (353)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.89  E-value=1.2e-22  Score=159.42  Aligned_cols=151  Identities=12%  Similarity=0.055  Sum_probs=99.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLDD   53 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   53 (184)
                      ...+||+++|++|+|||||+++|+....                               ..+..+..+.+.....+..  
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence            4579999999999999999999976411                               1111123333333333333  


Q ss_pred             eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHH------HHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ------HLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      ..+.+.+|||||++.|......++..+|++++|+|++++.+..      .....+..+..         ....|+++|+|
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---------~~~~~iIvviN  179 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---------LGIHNLIIAMN  179 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---------TTCCCEEEEEE
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---------cCCCcEEEEEE
Confidence            3456999999999999998889999999999999999875432      22222223322         12357999999


Q ss_pred             CCCCCCCccccHHH----HHHHHHhc-----CCCEEEeecCCCCCHHH
Q psy12922        128 KSDVKTQRAVQTKD----AQMLADNY-----SLPFYEVSCKQNINIDE  166 (184)
Q Consensus       128 K~D~~~~~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~gv~~  166 (184)
                      |+|+.+..+.....    ...+....     +++++++||++|.|+++
T Consensus       180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            99997633322222    22333322     46799999999999974

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=1.5e-24  Score=170.54  Aligned_cols=159  Identities=16%  Similarity=0.183  Sum_probs=115.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ...+|+++|++++|||||+++|.+..+.....++++.++....+..++ ...+.+|||||++.|...+..+++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            457899999999999999999998776555566666555555444422 2248999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHH---HHhc--CCCEEEeecC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQML---ADNY--SLPFYEVSCK  159 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~  159 (184)
                      |+|++++...+.... +..+.          ..++|+++|+||+|+....... .......   +..+  .++++++||+
T Consensus        82 VVDa~dg~~~qt~e~-l~~~~----------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P           82 VVAADDGVMKQTVES-IQHAK----------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             ECBSSSCCCHHHHHH-HHHHH----------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             EEECCCCccHHHHHH-HHHHH----------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence            999998654433332 33333          2468999999999996532211 1112111   1111  2578999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLIR  176 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~~  176 (184)
                      +|.|+++++++|...+.
T Consensus       151 tG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          151 TGENMMALAEATIALAE  167 (537)
T ss_dssp             SSCSSHHHHHHHHHHHT
T ss_pred             CCCCchhHHHHHHHhhh
Confidence            99999999999987654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.88  E-value=3.9e-22  Score=157.26  Aligned_cols=116  Identities=14%  Similarity=0.078  Sum_probs=83.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc------------------CC----CccccccceeEEEEEEEeCCeeEEEEEEe
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET------------------YY----DTYISTIGIDFKQKIIDLDDVPTKLQIWD   62 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   62 (184)
                      ++..+|+|+|++|||||||+++|+...                  +.    .+..+..+.......+...+  +.+.+||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            356899999999999999999996211                  00    01112233333333444444  4599999


Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      |||+..|......+++.+|++++|+|++++........| ..+..          .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----------~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----------RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----------TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----------cCCCEEEEEeCCCCcc
Confidence            999999999888999999999999999987665555444 33332          4789999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=3.6e-22  Score=153.53  Aligned_cols=148  Identities=14%  Similarity=0.140  Sum_probs=101.8

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhC--------cCCC---------ccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDE--------TYYD---------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      +....++|+++|++++|||||+++|+..        .+..         +..+..+.+...  ..+......+.+|||||
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~~~~~iiDtpG   84 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH--VEYETAKRHYSHVDCPG   84 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE--EEEECSSCEEEEEECCC
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee--eEeccCCeEEEEEECCC
Confidence            3456799999999999999999999873        1110         011222333332  33333345699999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc---cHHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV---QTKD  141 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~  141 (184)
                      +..|.......+..+|++++|+|++++.. .....++..+..          .++| +++|+||+|+....+.   ...+
T Consensus        85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----------~~ip~iivviNK~Dl~~~~~~~~~~~~~  153 (405)
T 2c78_A           85 HADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----------VGVPYIVVFMNKVDMVDDPELLDLVEME  153 (405)
T ss_dssp             SGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----------TTCCCEEEEEECGGGCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----------cCCCEEEEEEECccccCcHHHHHHHHHH
Confidence            99998888888999999999999987643 333445555544          3677 8999999999752221   1223


Q ss_pred             HHHHHHhcC-----CCEEEeecCCCCC
Q psy12922        142 AQMLADNYS-----LPFYEVSCKQNIN  163 (184)
Q Consensus       142 ~~~~~~~~~-----~~~~~~Sa~~~~g  163 (184)
                      ...+....+     ++++++||++|.|
T Consensus       154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          154 VRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHhcccccCCCEEEccHHHhhh
Confidence            455555554     6899999999987

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.87  E-value=5.1e-23  Score=155.86  Aligned_cols=160  Identities=20%  Similarity=0.306  Sum_probs=89.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccc--------cccceeEEEEEEEeCCeeEEEEEEeCCCc-------cc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYI--------STIGIDFKQKIIDLDDVPTKLQIWDTAGQ-------ER   68 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~   68 (184)
                      +..++|+|+|++|+|||||+++|..... ...+.        ++.+.......+...+....+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999999999876433 22221        33333333333444566678999999998       66


Q ss_pred             cccchH-------hhhcCC-------------cEEEEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         69 FRTLTT-------AYYRGA-------------MGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        69 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      +..+..       .+++.+             ++++++++.+ ..++.... .++..+           ..++|+++|+|
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----------~~~~piIlV~N  182 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----------HNKVNIVPVIA  182 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----------CS-SCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----------ccCCCEEEEEE
Confidence            666665       555443             3455555432 23343333 222222           35789999999


Q ss_pred             CCCCCCCccccH--HHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        128 KSDVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       128 K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      |+|+...+++..  ..+..++...+++++++||++|.| ++.|.++.+.+.+
T Consensus       183 K~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          183 KADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            999987555544  456667777889999999999999 8888888777754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.87  E-value=6.6e-22  Score=150.03  Aligned_cols=147  Identities=8%  Similarity=0.054  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      +|+++|++++|||||+++|+        .+..+.+.....+..+  ...+.+|||||++.|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998        2223333333333333  3459999999999998777778899999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-EEEEe-CCCCCCCccccH--HHHHHHHHhc---CCCEEE--eecC
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-VLAGN-KSDVKTQRAVQT--KDAQMLADNY---SLPFYE--VSCK  159 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~  159 (184)
                       +. ........++..+..          .++|. ++++| |+|+ +......  .+..++....   .+++++  +||+
T Consensus        93 -~~-g~~~qt~e~~~~~~~----------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~  159 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL----------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKS  159 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH----------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred             -CC-CCcHHHHHHHHHHHH----------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence             53 234445555555544          25666 89999 9998 4322221  3344444443   368999  9999


Q ss_pred             C---CCCHHHHHHHHHHHHHHH
Q psy12922        160 Q---NINIDEAFLTLARLIREQ  178 (184)
Q Consensus       160 ~---~~gv~~~~~~l~~~~~~~  178 (184)
                      +   |.|++++++.|.+.+...
T Consensus       160 ~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          160 AKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             SSSTTTTHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhhcccc
Confidence            9   999999999999887653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=4.7e-22  Score=147.76  Aligned_cols=124  Identities=15%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             EEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCC
Q psy12922         47 KIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNA  116 (184)
Q Consensus        47 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (184)
                      ..+...+  +.+++||++|+++++..|..++++++++++|+|++          +.+++++...|+..+...      ..
T Consensus       160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~------~~  231 (327)
T 3ohm_A          160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY------PW  231 (327)
T ss_dssp             EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS------GG
T ss_pred             EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh------hc
Confidence            3344443  56999999999999999999999999999999664          667788888888877653      33


Q ss_pred             CCCCeEEEEEeCCCCCCCc----------------cccHHHHHHHH----------HhcCCCEEEeecCCCCCHHHHHHH
Q psy12922        117 SPDVVKVLAGNKSDVKTQR----------------AVQTKDAQMLA----------DNYSLPFYEVSCKQNINIDEAFLT  170 (184)
Q Consensus       117 ~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~  170 (184)
                      ..++|++|++||+|+...+                ..+..++.++.          ...++.++++||+++.||+.+|..
T Consensus       232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~  311 (327)
T 3ohm_A          232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA  311 (327)
T ss_dssp             GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence            4689999999999985422                24555555553          234577899999999999999999


Q ss_pred             HHHHHHHH
Q psy12922        171 LARLIREQ  178 (184)
Q Consensus       171 l~~~~~~~  178 (184)
                      +.+.+.+.
T Consensus       312 v~~~Il~~  319 (327)
T 3ohm_A          312 VKDTILQL  319 (327)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988753

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.87  E-value=1.3e-21  Score=150.03  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=108.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCc-------CC---------CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDET-------YY---------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   69 (184)
                      ..++|+++|++++|||||+++|+...       +.         .+.....+.+..  ...+......+.+|||||+..|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA--HVEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECE--EEEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEee--eEEeccCCeEEEEEECCChHHH
Confidence            46899999999999999999998741       10         001122233322  2333334456999999999998


Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc---cHHHHHHH
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV---QTKDAQML  145 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~  145 (184)
                      .......+..+|++++|+|++++...+.... +..+..          .++| +++|+||+|+....+.   ...+..++
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~----------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~  148 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ----------IGVEHVVVYVNKADAVQDSEMVELVELEIREL  148 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH----------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH----------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHH
Confidence            8888888899999999999998543333333 333333          3677 6899999998752221   12344556


Q ss_pred             HHhcC-----CCEEEeecCCCCC----------HHHHHHHHHHHHH
Q psy12922        146 ADNYS-----LPFYEVSCKQNIN----------IDEAFLTLARLIR  176 (184)
Q Consensus       146 ~~~~~-----~~~~~~Sa~~~~g----------v~~~~~~l~~~~~  176 (184)
                      +...+     ++++++||++|.|          +.++++.|.+.+.
T Consensus       149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            65554     6899999999764          8888888877654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=4.3e-22  Score=138.28  Aligned_cols=120  Identities=19%  Similarity=0.300  Sum_probs=88.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcC--
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG--   79 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~--   79 (184)
                      ...++|+++|.+|||||||+++|.+..+..   ...++.+.++         ....+.+|||||...+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            567899999999999999999999977533   2222222211         23458999999999988888777765  


Q ss_pred             --CcEEEEEEeCC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922         80 --AMGILLMYDVT-NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA  136 (184)
Q Consensus        80 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (184)
                        +|++++|+|++ ++.++.....|+..+......   ....+.|+++|+||+|+.....
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES---SCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHH---HSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhh---ccccCCCEEEEEEchHhcCCCC
Confidence              89999999999 888998888887777653100   0246899999999999976443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=1e-21  Score=148.30  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=88.6

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN----------LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      .+.+++||++|++.++..|..++++++++|||+|+++          .+++.+...|+..+...      ....++|++|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~------~~~~~~piIL  273 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN------RVFSNVSIIL  273 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC------GGGTTSEEEE
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc------hhhCCCCEEE
Confidence            3569999999999999999999999999999999998          67899988888888652      2346899999


Q ss_pred             EEeCCCCCCCc----------------cccHHHHHHHH--------H---hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        125 AGNKSDVKTQR----------------AVQTKDAQMLA--------D---NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       125 v~nK~D~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      |+||+|+...+                .....++..++        .   ..++.+++|||++|.|++++|+++.+.+..
T Consensus       274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            99999985311                13445555544        1   345788999999999999999999998875


Q ss_pred             HH
Q psy12922        178 QT  179 (184)
Q Consensus       178 ~~  179 (184)
                      ..
T Consensus       354 ~~  355 (362)
T 1zcb_A          354 DN  355 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=3.3e-21  Score=149.39  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC---CCc---------cc---------------------cccceeEEEEEEEe
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY---YDT---------YI---------------------STIGIDFKQKIIDL   51 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~---------~~---------------------~~~~~~~~~~~~~~   51 (184)
                      ...++|+++|++++|||||+++|+....   ...         ..                     +..+.+.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4568999999999999999999986531   100         00                     11122222222222


Q ss_pred             CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         52 DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                        ....+.+|||||++.|......++..+|++++|+|++++... ....++..+...         ...|+++|+||+|+
T Consensus       102 --~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---------~~~~iIvviNK~Dl  169 (434)
T 1zun_B          102 --AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---------GIKHIVVAINKMDL  169 (434)
T ss_dssp             --SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---------TCCEEEEEEECTTT
T ss_pred             --CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---------CCCeEEEEEEcCcC
Confidence              344699999999999988888889999999999999976432 233334434331         23479999999999


Q ss_pred             CCCccc----cHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922        132 KTQRAV----QTKDAQMLADNYS-----LPFYEVSCKQNINIDEA  167 (184)
Q Consensus       132 ~~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~  167 (184)
                      ......    ...+...++...+     ++++++||++|.|++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            752111    2234555666666     68999999999999874

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.86  E-value=2.7e-23  Score=162.25  Aligned_cols=155  Identities=17%  Similarity=0.214  Sum_probs=107.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ...+|+++|++++|||||+++|....+.....++.+.+.....+..++.  .+.+|||||++.|...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            4579999999999999999999986654444444444333333334443  48999999999999988888999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--cccHH--HHHHHHHhc--CCCEEEeecC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--AVQTK--DAQMLADNY--SLPFYEVSCK  159 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~  159 (184)
                      |+|++++...+... .+..+..          .++|+++++||+|+....  .....  ....+...+  .++++++||+
T Consensus        81 VVda~~g~~~qT~e-~l~~~~~----------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           81 VVAADDGVMPQTIE-AIQHAKA----------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             EEETTTBSCTTTHH-HHHHHHH----------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred             EeecccCccHHHHH-HHHHHHh----------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence            99998742211122 2222322          478999999999996421  11000  000011222  2689999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLAR  173 (184)
Q Consensus       160 ~~~gv~~~~~~l~~  173 (184)
                      +|.|+++++++|..
T Consensus       150 tG~gI~eLle~I~~  163 (501)
T 1zo1_I          150 AGTGIDELLDAILL  163 (501)
T ss_dssp             TCTTCTTHHHHTTT
T ss_pred             eccCcchhhhhhhh
Confidence            99999999999864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=4.5e-21  Score=152.98  Aligned_cols=159  Identities=21%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC----------------CeeEEEEEEeCCCcccc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------------DVPTKLQIWDTAGQERF   69 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~   69 (184)
                      ...+|+++|++++|||||+++|.+..+........+...........                .....+.+|||||+..|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765432211111111111111100                01124899999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--------
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--------  138 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--------  138 (184)
                      ...+...++.+|++++|+|+++   +.+++.+.    .+..          .++|+++|+||+|+...+...        
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----------~~vPiIVViNKiDl~~~~~~~~~~~~~e~  149 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----------YRTPFVVAANKIDRIHGWRVHEGRPFMET  149 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----------TTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----------cCCeEEEEecccccccccccccCCchHHH
Confidence            9988888899999999999998   55544333    2322          478999999999996432110        


Q ss_pred             -----H---H-------HHHHHHHhc---------------CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        139 -----T---K-------DAQMLADNY---------------SLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       139 -----~---~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                           .   .       +........               .++++++||++|.|+++++++|...+...
T Consensus       150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                 0   0       011111111               23799999999999999999999877643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.2e-21  Score=156.99  Aligned_cols=153  Identities=12%  Similarity=0.041  Sum_probs=102.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCcc-------------------------------ccccceeEEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTY-------------------------------ISTIGIDFKQKIIDLD   52 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~   52 (184)
                      ....++|+++|++|+|||||+++|+........                               .+.++.+.....+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            455799999999999999999999865321111                               1233444444444444


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHH------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      +  ..+.+|||||++.|......+++.+|++++|+|++++...      ......+..+..         ....|++||+
T Consensus       244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---------lgi~~iIVVv  312 (611)
T 3izq_1          244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---------LGIHNLIIAM  312 (611)
T ss_dssp             S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---------TTCCEEEEEE
T ss_pred             C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---------cCCCeEEEEE
Confidence            3  4599999999999988888889999999999999875310      112222222222         1235699999


Q ss_pred             eCCCCCCCccccH----HHHHHHHHhc-----CCCEEEeecCCCCCHHHH
Q psy12922        127 NKSDVKTQRAVQT----KDAQMLADNY-----SLPFYEVSCKQNINIDEA  167 (184)
Q Consensus       127 nK~D~~~~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~~  167 (184)
                      ||+|+....+...    .....+....     +++++++||++|.|+.++
T Consensus       313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            9999976322221    2233333333     368999999999999865

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.86  E-value=8.8e-22  Score=153.36  Aligned_cols=155  Identities=17%  Similarity=0.109  Sum_probs=104.1

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----------------------------ccccccceeEEEEEE
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----------------------------TYISTIGIDFKQKII   49 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~   49 (184)
                      |++....++|+++|++++|||||+++|+...  +..                             +..+..+.+.....+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            6777788999999999999999999998641  111                             001223333333333


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---HH---HHHHHHHHHHHhcccCCCCCCCCC-eE
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---FQ---HLNYWLKNIEEVGCNSNQNASPDV-VK  122 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~-p~  122 (184)
                      ..+  ...+.+|||||++.|.......+..+|++++|+|++++..   ++   ....++..+..          .++ ++
T Consensus        81 ~~~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----------~~v~~i  148 (458)
T 1f60_A           81 ETP--KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----------LGVRQL  148 (458)
T ss_dssp             ECS--SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----------TTCCEE
T ss_pred             ecC--CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----------cCCCeE
Confidence            333  4569999999999998888888999999999999997531   11   22223333332          245 49


Q ss_pred             EEEEeCCCCCCC-cc---ccHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922        123 VLAGNKSDVKTQ-RA---VQTKDAQMLADNYS-----LPFYEVSCKQNINIDEA  167 (184)
Q Consensus       123 ivv~nK~D~~~~-~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~  167 (184)
                      ++|+||+|+... .+   ....+...++...+     ++++++||++|.|+.++
T Consensus       149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999999999731 11   12233444555544     68999999999998743

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=3.2e-21  Score=149.43  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=100.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC--cCCCc-----------------------------cccccceeEEEEEEEeCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYDT-----------------------------YISTIGIDFKQKIIDLDD   53 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   53 (184)
                      ...++|+++|++++|||||+++|+..  .+...                             ..+..+.+.....+..  
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence            45699999999999999999999864  22111                             1123333333333333  


Q ss_pred             eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHH-------HHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-------WLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      ....+.+|||||+..|......++..+|++++|+|+++ .+++....       .+..+..         ....|+++|+
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---------~~~~~iivvi  151 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---------MGLDQLIVAV  151 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---------TTCTTCEEEE
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---------cCCCeEEEEE
Confidence            34569999999999998888889999999999999998 55554332       2222222         1234689999


Q ss_pred             eCCCCCCCc------cccHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922        127 NKSDVKTQR------AVQTKDAQMLADNYS-----LPFYEVSCKQNINIDEA  167 (184)
Q Consensus       127 nK~D~~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~  167 (184)
                      ||+|+....      +....+...++...+     ++++++||++|.|+.++
T Consensus       152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence            999997521      112234556666655     67999999999999744

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=3.4e-22  Score=155.78  Aligned_cols=153  Identities=18%  Similarity=0.148  Sum_probs=98.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCC--------ccccccchHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG--------QERFRTLTTAY   76 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~   76 (184)
                      ...+|+++|.+|||||||+|+|.+..+. ....+..+.+......  ......+.+|||||        ++++......+
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--TTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--EECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            3578999999999999999999986653 2333444444433333  33344599999999        55666777788


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEE
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYE  155 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~  155 (184)
                      ++.+|++++|+|..++.+.  ...++..+..         ..++|+++|+||+|+......    ..++ ..++. ..++
T Consensus       100 ~~~ad~il~VvD~~~~~~~--~d~~l~~~l~---------~~~~pvilV~NK~D~~~~~~~----~~e~-~~lg~~~~~~  163 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTA--ADEEVAKILY---------RTKKPVVLAVNKLDNTEMRAN----IYDF-YSLGFGEPYP  163 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCH--HHHHHHHHHT---------TCCSCEEEEEECC-------------CCS-GGGSSSSEEE
T ss_pred             HhhCCEEEEEEeCCCCCCh--HHHHHHHHHH---------HcCCCEEEEEECccchhhhhh----HHHH-HHcCCCceEE
Confidence            8999999999998764332  2233333332         368999999999998643211    1111 12233 5679


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +||++|.|+.++++++.+.+.
T Consensus       164 iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          164 ISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             CCTTTCTTHHHHHHHHHTTGG
T ss_pred             eecccccchHHHHHHHHhhcc
Confidence            999999999999999987654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=1.5e-21  Score=144.39  Aligned_cols=159  Identities=11%  Similarity=0.054  Sum_probs=99.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC------ccccc----------------------ccee-------------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD------TYIST----------------------IGID-------------   43 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~------~~~~~----------------------~~~~-------------   43 (184)
                      ...++|+|+|.+|||||||+++|++..+..      ...|+                      ++.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            356799999999999999999999877631      11222                      0000             


Q ss_pred             ----------EEEEEEEeCCeeEEEEEEeCCCcc-------------ccccchHhhhcCCcEEE-EEEeCCChhHHHHHH
Q psy12922         44 ----------FKQKIIDLDDVPTKLQIWDTAGQE-------------RFRTLTTAYYRGAMGIL-LMYDVTNLESFQHLN   99 (184)
Q Consensus        44 ----------~~~~~~~~~~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~   99 (184)
                                .....+..++ ...+.+|||||..             .+......+++.++.++ +|+|++++.+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                      0000000111 2459999999964             23445567788888776 799998754433333


Q ss_pred             HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc--C-CCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        100 YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY--S-LPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      .+...+.          ..+.|+++|+||+|+..................  + ++++++||++|.|+++++++|.+.
T Consensus       183 ~~~~~~~----------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVD----------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHC----------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhC----------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            3443332          357899999999999764332222111100011  2 357889999999999999998774

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=5.5e-22  Score=154.85  Aligned_cols=152  Identities=13%  Similarity=0.130  Sum_probs=88.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----------------------------ccccccceeEEEEEEEeCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----------------------------TYISTIGIDFKQKIIDLDD   53 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   53 (184)
                      ...++|+++|++++|||||+++|+...  +..                             +.....+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            456899999999999999999997521  110                             0112223333333343443


Q ss_pred             eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh---HHH---HHHHHHHHHHHhcccCCCCCCCCCe-EEEEE
Q psy12922         54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE---SFQ---HLNYWLKNIEEVGCNSNQNASPDVV-KVLAG  126 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~  126 (184)
                        ..+.+|||||++.|.......+..+|++++|+|++++.   +++   .....+.....          .++| +++|+
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----------~~vp~iivvi  188 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------QGINHLVVVI  188 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------TTCSSEEEEE
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----------cCCCEEEEEE
Confidence              46999999999999888888889999999999999863   222   12222222222          3566 99999


Q ss_pred             eCCCCCCCc------cccHHHHHHHHHhc-------CCCEEEeecCCCCCHHHHH
Q psy12922        127 NKSDVKTQR------AVQTKDAQMLADNY-------SLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus       127 nK~D~~~~~------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~~~  168 (184)
                      ||+|+....      +....+...+....       +++++++||++|.|+.+++
T Consensus       189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            999996421      11122344555544       4679999999999998754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=5.3e-21  Score=142.61  Aligned_cols=117  Identities=14%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      .+.+++||++|+++++..|..+++.++++|+|+|++          +.+++.+...|+..+...      ....++|++|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~------~~~~~~piiL  233 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN------EFLKGAVKLI  233 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC------GGGTTSEEEE
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh------hccCCCeEEE
Confidence            456999999999999999999999999999999998          678888888888887763      3346899999


Q ss_pred             EEeCCCCCCCc---------------cccHHHHHHHH-Hh--------------------------cCCCEEEeecCCCC
Q psy12922        125 AGNKSDVKTQR---------------AVQTKDAQMLA-DN--------------------------YSLPFYEVSCKQNI  162 (184)
Q Consensus       125 v~nK~D~~~~~---------------~~~~~~~~~~~-~~--------------------------~~~~~~~~Sa~~~~  162 (184)
                      ++||+|+...+               .....++.++. .+                          ..+.++++||+++.
T Consensus       234 v~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~  313 (340)
T 4fid_A          234 FLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS  313 (340)
T ss_dssp             EEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH
T ss_pred             EEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH
Confidence            99999984311               01233332222 22                          23678999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIRE  177 (184)
Q Consensus       163 gv~~~~~~l~~~~~~  177 (184)
                      +|+.+|..+.+.+.+
T Consensus       314 nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          314 NIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.84  E-value=2.6e-20  Score=130.97  Aligned_cols=159  Identities=13%  Similarity=0.169  Sum_probs=98.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccchH
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTLTT   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~   74 (184)
                      ....+|+++|++|||||||+++|.+..+.....++.+.......+...+   .+.+||+||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            3457999999999999999999998764333334444333333333333   378999999632          222223


Q ss_pred             hhh---cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--cHHHHHHHHHhc
Q psy12922         75 AYY---RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--QTKDAQMLADNY  149 (184)
Q Consensus        75 ~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~  149 (184)
                      .++   ..++++++++|++++.+.... .....+..          .+.|+++|.||+|+....+.  ....+..++...
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~  169 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  169 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc
Confidence            344   468999999999876543221 11112222          46899999999998653222  123344444444


Q ss_pred             C--CCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        150 S--LPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       150 ~--~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +  +.++++||+++.|+++++++|.+.+.+
T Consensus       170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          170 NGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            3  568899999999999999999887654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.83  E-value=2.3e-20  Score=155.85  Aligned_cols=162  Identities=15%  Similarity=0.101  Sum_probs=107.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-------CC-------ccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------YD-------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   69 (184)
                      ....++|+++|++++|||||+++|+....       ..       ......+.++....+.++.....+.+|||||+..|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            45669999999999999999999987410       00       00112222222222333444456999999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc---cHHHHHHH
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV---QTKDAQML  145 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~  145 (184)
                      .......+..+|++++|+|++++... +...++..+..          .++| +++|+||+|+....+.   ...+...+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----------lgIP~IIVVINKiDLv~d~e~le~i~eEi~el  441 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----------VGVPYIIVFLNKCDMVDDEELLELVEMEVREL  441 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----------HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----------cCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence            88888888999999999999976432 23334444443          2577 7899999999753221   12344555


Q ss_pred             HHhcC-----CCEEEeecCCC--------CCHHHHHHHHHHHHH
Q psy12922        146 ADNYS-----LPFYEVSCKQN--------INIDEAFLTLARLIR  176 (184)
Q Consensus       146 ~~~~~-----~~~~~~Sa~~~--------~gv~~~~~~l~~~~~  176 (184)
                      ....+     ++++++||++|        .|+.++++.|.+.+.
T Consensus       442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            65554     68999999999        468888888776543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.83  E-value=6.2e-20  Score=140.69  Aligned_cols=162  Identities=15%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccchHhh---hcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLTTAY---YRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~   80 (184)
                      -.|+++|++|||||||++++++........+.++.......+..++ ...+.++|+||...    +..+...+   +..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999998654333334444444444454444 23589999999632    22222222   4578


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      +.++.++|++ .+.+..+..+..++.....     .....|.++|+||+|+...  .............+++++.+||++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~-----aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~  308 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDP-----ALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALT  308 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCH-----HHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhH-----HhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCC
Confidence            9999999997 5566777766666655310     0136889999999998753  223334445555678999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIREQ  178 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~  178 (184)
                      ++|+++++++|.+.+.+.
T Consensus       309 g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          309 GAGLPALKEALHALVRST  326 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTS
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999999988754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.83  E-value=1.1e-19  Score=147.69  Aligned_cols=162  Identities=16%  Similarity=0.268  Sum_probs=106.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccce--------------eE--------------------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGI--------------DF--------------------------   44 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~--------------~~--------------------------   44 (184)
                      ..++|+|+|.+|+|||||+|+|++..+ .....|++..              .+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998764 2233333311              00                          


Q ss_pred             -------------EEEEEEeCCee--EEEEEEeCCCccc---cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHH
Q psy12922         45 -------------KQKIIDLDDVP--TKLQIWDTAGQER---FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE  106 (184)
Q Consensus        45 -------------~~~~~~~~~~~--~~~~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  106 (184)
                                   ....+..+...  ..+.+|||||...   .......+++.+|++++|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00111111110  2489999999654   33445678899999999999998877666655543332


Q ss_pred             HhcccCCCCCCCCCeEEEEEeCCCCCCCccccH----------HHHH-----HHHHh--------cCCCEEEeecC----
Q psy12922        107 EVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT----------KDAQ-----MLADN--------YSLPFYEVSCK----  159 (184)
Q Consensus       107 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----------~~~~-----~~~~~--------~~~~~~~~Sa~----  159 (184)
                                ..+.|+++|+||+|+........          ....     .+...        ...+++++||+    
T Consensus       228 ----------~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~  297 (695)
T 2j69_A          228 ----------GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALR  297 (695)
T ss_dssp             ----------TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHH
T ss_pred             ----------hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHH
Confidence                      23678999999999864321100          0111     11111        12479999999    


Q ss_pred             ----------CCCCHHHHHHHHHHHHHH
Q psy12922        160 ----------QNINIDEAFLTLARLIRE  177 (184)
Q Consensus       160 ----------~~~gv~~~~~~l~~~~~~  177 (184)
                                ++.|+++++++|.+.+..
T Consensus       298 ~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          298 RRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                      999999999999887754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.83  E-value=1.4e-21  Score=156.25  Aligned_cols=150  Identities=16%  Similarity=0.137  Sum_probs=82.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD   52 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   52 (184)
                      ....++|+++|++++|||||+++|+....                               ..+..++++.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            34568999999999999999999964211                               11112334444444444333


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh---HH---HHHHHHHHHHHHhcccCCCCCCCCCe-EEEE
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE---SF---QHLNYWLKNIEEVGCNSNQNASPDVV-KVLA  125 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv  125 (184)
                        ...+.+|||||+..|.......+..+|++++|+|++++.   .+   ......+..+..          .++| +++|
T Consensus       254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----------lgip~iIvv  321 (592)
T 3mca_A          254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----------LGISEIVVS  321 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----------SSCCCEEEE
T ss_pred             --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----------cCCCeEEEE
Confidence              346899999999999888888889999999999998542   11   112222233333          2454 8999


Q ss_pred             EeCCCCCCCcccc----HHHHHHHH-HhcCC-----CEEEeecCCCCCHH
Q psy12922        126 GNKSDVKTQRAVQ----TKDAQMLA-DNYSL-----PFYEVSCKQNINID  165 (184)
Q Consensus       126 ~nK~D~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~  165 (184)
                      +||+|+.......    ......+. ...++     +++++||++|.|+.
T Consensus       322 iNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          322 VNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             EECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             EeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            9999986521111    12233343 33443     69999999999998

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=1.9e-19  Score=130.87  Aligned_cols=123  Identities=14%  Similarity=0.077  Sum_probs=84.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc-----
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR-----   78 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-----   78 (184)
                      .+.++|+++|.+|+|||||+++|++... .....+.++.......+..++.  .+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4679999999999999999999999775 2333344444555555555665  5999999998877655444433     


Q ss_pred             ----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         79 ----GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        79 ----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                          .+|++++|++++..........|+..+....     ......|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~-----~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTF-----GKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHH-----CGGGGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHh-----chhhhcCEEEEEeCcccCCC
Confidence                7899999999876542222345565555521     11123599999999998643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=2.6e-19  Score=144.96  Aligned_cols=115  Identities=12%  Similarity=0.083  Sum_probs=80.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC-------------cc-----ccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-------------TY-----ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      +...+|+++|++|+|||||+++|.......             +.     ....+.......+..  ..+.+++|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CCEEEEEEeCCCc
Confidence            456799999999999999999998532210             00     111222222223323  3456999999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      ..|......+++.+|++++|+|++++.... ...++..+..          .++|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----------~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----------LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----------TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----------ccCCEEEEecCCchh
Confidence            999888888999999999999998754332 2344444443          378999999999986

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=2.3e-19  Score=133.59  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCccc-------------cccchHhhhcCCcEEEEEEeCCChhHH-HHHHHHHHHHHHhcccCCCCCCCCCe
Q psy12922         56 TKLQIWDTAGQER-------------FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVV  121 (184)
Q Consensus        56 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p  121 (184)
                      ..+.+|||||...             +......++..+|++++|+|.++.... .....+...+          ...+.|
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----------~~~~~~  200 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----------DPEGKR  200 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----------CSSCSS
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----------CCCCCc
Confidence            3589999999643             344556778999999999997433211 1111222222          235789


Q ss_pred             EEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC---C---CCCHHHHHHHHHHHHHH
Q psy12922        122 KVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK---Q---NINIDEAFLTLARLIRE  177 (184)
Q Consensus       122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~gv~~~~~~l~~~~~~  177 (184)
                      +++|+||+|+..................+..++++|+.   +   +.|+.++++.+.+.+..
T Consensus       201 ~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          201 TIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             EEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            99999999997644322222211111222566766554   4   78999999988877654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.80  E-value=9e-20  Score=138.25  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=73.9

Q ss_pred             EEEEEeCCCcccc-------------ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922         57 KLQIWDTAGQERF-------------RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV  123 (184)
Q Consensus        57 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  123 (184)
                      .+.+|||||...+             ......+++.+|++++|+|..+.+...  ..++..+..       ....+.|++
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~-------~~~~~~~~i  207 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-------VDPSGDRTF  207 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH-------SCTTCTTEE
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH-------hcccCCCEE
Confidence            4899999997665             445677889999999999876533221  223333333       334678999


Q ss_pred             EEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHH
Q psy12922        124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL  171 (184)
Q Consensus       124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  171 (184)
                      +|+||+|+.................++.+|+.+|++++.++++.+...
T Consensus       208 ~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          208 GVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             EEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             EEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            999999997655544444444455667889999999988887655443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.80  E-value=1.1e-18  Score=141.83  Aligned_cols=117  Identities=20%  Similarity=0.178  Sum_probs=82.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCc--CC------C----------ccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDET--YY------D----------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAG   65 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   65 (184)
                      .+...+|+|+|++|+|||||+++|....  +.      .          +.....+.......+...  .+.+.+|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence            3567899999999999999999998421  10      0          001122222222333333  35699999999


Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +..|...+..+++.+|++++|+|++++........|.. +..          .++|+++|+||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----------~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----------YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----------TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----------cCCCEEEEEECCCccc
Confidence            99998888889999999999999998776666555543 333          3789999999999854

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=2.2e-18  Score=136.14  Aligned_cols=116  Identities=16%  Similarity=0.070  Sum_probs=78.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCC----------------------ccccccceeEEEEEEEeCCeeEEEEEEe
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD----------------------TYISTIGIDFKQKIIDLDDVPTKLQIWD   62 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D   62 (184)
                      ++..+|+++|++|+|||||+++|+......                      +..+..+.......+...  .+.+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--DCLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--TEEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--CeEEEEEE
Confidence            457899999999999999999998632100                      001111111112223233  45699999


Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      |||+..|......+++.+|++++|+|++++.... ...++..+.          ..++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~----------~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR----------LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT----------TTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH----------HcCCCEEEEEcCcCCcc
Confidence            9999999888888899999999999998764221 222222222          35789999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.79  E-value=1.4e-19  Score=133.88  Aligned_cols=161  Identities=19%  Similarity=0.316  Sum_probs=86.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC-cCCCccc--------cccceeEEEEEEEeCCeeEEEEEEeCCCc-------cc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE-TYYDTYI--------STIGIDFKQKIIDLDDVPTKLQIWDTAGQ-------ER   68 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~   68 (184)
                      +..++|+++|++|||||||+++|.+. .+.....        ++.............+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 3332221        12111222222233445567999999997       44


Q ss_pred             cccchH-------hhhcC-------------CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         69 FRTLTT-------AYYRG-------------AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        69 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      +..+..       .++..             +++++++.+++.. +++...  ...+...        ....|+++|+||
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l--------~~~~~iilV~~K  164 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI--------HNKVNIVPVIAK  164 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH--------TTTSCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH--------HhcCCEEEEEEe
Confidence            554443       33332             2346666654321 122221  1222221        246899999999


Q ss_pred             CCCCCCcccc--HHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        129 SDVKTQRAVQ--TKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       129 ~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .|+...++..  ...+.+++...+++++++||++| |++++|.++.+.+.+
T Consensus       165 ~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          165 ADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            9997644432  34667788888999999999999 999999999887754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.78  E-value=3e-19  Score=136.55  Aligned_cols=85  Identities=20%  Similarity=0.128  Sum_probs=47.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE--E-------------------eCC-eeEEEEEEeCCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--D-------------------LDD-VPTKLQIWDTAG   65 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~-~~~~~~l~D~~G   65 (184)
                      ++|+++|.||||||||+|+|++........|+++.+......  .                   +.+ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999876433344444433322221  1                   122 235699999999


Q ss_pred             ccc----cccchH---hhhcCCcEEEEEEeCCCh
Q psy12922         66 QER----FRTLTT---AYYRGAMGILLMYDVTNL   92 (184)
Q Consensus        66 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   92 (184)
                      ...    ...+..   .+++.+|++++|+|++++
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222322   346889999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=4e-18  Score=124.39  Aligned_cols=121  Identities=16%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH-------hh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT-------AY   76 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~-------~~   76 (184)
                      ...++|+++|.+|+|||||+++|++..+. ....+.++.......+...  ...+.+|||||...+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            45799999999999999999999987652 2222333333333333334  34599999999876543322       11


Q ss_pred             --hcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCC--CCeEEEEEeCCCCCCCc
Q psy12922         77 --YRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASP--DVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        77 --~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~  135 (184)
                        .+.+|++++|+|++.. ++.. ...|+..+...       ...  ..|+++|+||+|+....
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~-------~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDS-------FGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHH-------HCGGGGGGEEEEEECCSCCCGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHH-------hCcccccCEEEEEECcccCCcC
Confidence              2468999999998753 2322 23556666542       122  27999999999986543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.78  E-value=1.2e-17  Score=136.00  Aligned_cols=120  Identities=19%  Similarity=0.155  Sum_probs=83.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----------cc-----ccccceeEEEEEEEeC-----CeeEEEE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----------TY-----ISTIGIDFKQKIIDLD-----DVPTKLQ   59 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------~~-----~~~~~~~~~~~~~~~~-----~~~~~~~   59 (184)
                      +.+...+|+|+|+.|+|||||+++|+...  +..           +.     ....+.......+.+.     +..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34667899999999999999999997531  110           00     1122222222223332     2347799


Q ss_pred             EEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        60 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +|||||+..|......+++.+|++++|+|++++........| .....          .++|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----------~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----------YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----------cCCCEEEEEeCCCccc
Confidence            999999999988888899999999999999987554444333 33322          4789999999999853

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.78  E-value=1.8e-17  Score=124.70  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccccc--
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERFR--   70 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~--   70 (184)
                      ++|+++|.||||||||+|+|++........|+++.+.....+.+++.               +..+.+|||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            78999999999999999999997654444554444444444445542               2469999999976543  


Q ss_pred             --cc---hHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHH---------------H-------------
Q psy12922         71 --TL---TTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIE---------------E-------------  107 (184)
Q Consensus        71 --~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~---------------~-------------  107 (184)
                        .+   ...+++.+|++++|+|+++.          +.+++...+..++.               .             
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23457899999999999852          23333332222221               0             


Q ss_pred             --------h---cccCC--------------CCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922        108 --------V---GCNSN--------------QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus       108 --------~---~~~~~--------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                              .   ....+              ......+|+++++|+.|..-........+.+++...+++++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                    0   00000              11234599999999999643222345566778888899999999653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=8e-18  Score=136.83  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=82.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh--CcCCC-----------cc-----ccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYYD-----------TY-----ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      +...+|+|+|++|+|||||+++|+.  +.+..           ++     .+.++.......+...+  +.+.+|||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence            5678999999999999999999985  22110           00     11222222223333443  56999999999


Q ss_pred             cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      ..|......+++.+|++++|+|++++........|. .+..          .++|+++|+||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----------~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----------YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----------TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----------cCCCEEEEEECCCccc
Confidence            998888888899999999999999876665555543 3433          3789999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.8e-18  Score=132.66  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=79.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCcc--------ccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY--------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------   70 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------   70 (184)
                      +-.++|+|+|++|||||||++.|.+..+....        .++.........+...+....+.+||++|...+.      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34578999999999999999999986652111        1122212222222223444568999999965431      


Q ss_pred             -cc------------------hHhhhcCCc--EEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         71 -TL------------------TTAYYRGAM--GILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        71 -~~------------------~~~~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                       .+                  ...++..++  ++++..+.+. .++... ..|+..+.           .++|+++|+||
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~-----------~~v~iIlVinK  176 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH-----------EKVNIIPLIAK  176 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-----------TTSEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-----------ccCcEEEEEEc
Confidence             11                  112334444  4455544431 122222 24444442           37999999999


Q ss_pred             CCCCCCccccH--HHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        129 SDVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       129 ~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      +|+...+++..  ..+...+...+++++++|++++.++.+++..+.+.
T Consensus       177 ~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          177 ADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             ccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            99976555544  55677777889999999999999999887776654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.75  E-value=1.1e-18  Score=129.19  Aligned_cols=133  Identities=19%  Similarity=0.152  Sum_probs=105.4

Q ss_pred             HHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh-HHHHHH
Q psy12922         22 CIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE-SFQHLN   99 (184)
Q Consensus        22 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~   99 (184)
                      +|+.++..+.+. ..+.|+.+..+. ..+..++   .+.+||+  ++++..++..+++++|++++|+|++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577777778887 788888884443 3332222   5899999  8899999999999999999999999987 688888


Q ss_pred             HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CCEEEeecCCCCCHHHHHHHHH
Q psy12922        100 YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LPFYEVSCKQNINIDEAFLTLA  172 (184)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~~~~~l~  172 (184)
                      .|+..+..          .++|+++|+||+|+.+.+.+  .+...++...+  ++++++||++|.|++++|.++.
T Consensus       106 ~~l~~~~~----------~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK----------NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH----------TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH----------CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            89887754          47999999999999764332  33555666666  8999999999999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.74  E-value=4e-18  Score=128.92  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=69.8

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +.+.++||||...   .....+..+|++++|+|....+..+.+..               ...+.|+++|+||+|+....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------------~~~~~p~ivVlNK~Dl~~~~  233 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------------GVLELADIVVVNKADGEHHK  233 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------------TSGGGCSEEEEECCCGGGHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------------hHhhcCCEEEEECCCCcChh
Confidence            4589999999532   33445688999999999876543321110               11246999999999986422


Q ss_pred             cccHHHHHHHHH----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        136 AVQTKDAQMLAD----------NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       136 ~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .... ...++..          .++++++++||++|.|+++++++|.+.+..
T Consensus       234 ~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          234 EARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            2111 1112221          125789999999999999999999988765

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.74  E-value=1.2e-17  Score=127.22  Aligned_cols=125  Identities=14%  Similarity=0.141  Sum_probs=97.5

Q ss_pred             EEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHHhcccCCCCC
Q psy12922         47 KIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN----------LESFQHLNYWLKNIEEVGCNSNQNA  116 (184)
Q Consensus        47 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  116 (184)
                      ..+.+.+  +.+++|||+|++.++..|..++++++++|+|||+++          .+++++...|+..+...      ..
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~------~~  281 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN------RW  281 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC------TT
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc------cc
Confidence            3444454  679999999999999999999999999999999998          88999999999988763      24


Q ss_pred             CCCCeEEEEEeCCCCCCCcc---c---------------------------cHHHHHHH-----HHh--------cCCCE
Q psy12922        117 SPDVVKVLAGNKSDVKTQRA---V---------------------------QTKDAQML-----ADN--------YSLPF  153 (184)
Q Consensus       117 ~~~~p~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~-----~~~--------~~~~~  153 (184)
                      ..++|++||+||+|+...+.   .                           ....+..+     +..        ..+.+
T Consensus       282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~  361 (402)
T 1azs_C          282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP  361 (402)
T ss_dssp             CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred             CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence            56899999999999843221   1                           12333333     222        24667


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ++|||+++.||+.+|.++.+.+....
T Consensus       362 ~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          362 HFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCcCHHHHHHHHHHHHHHHH
Confidence            89999999999999999988876544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.73  E-value=2.3e-19  Score=135.65  Aligned_cols=158  Identities=13%  Similarity=0.081  Sum_probs=91.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCC------cccccc----------------------cee--------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYD------TYISTI----------------------GID--------------   43 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~------~~~~~~----------------------~~~--------------   43 (184)
                      ...+|+|+|.+|||||||+++|++..+..      ...|+.                      +.+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            34799999999999999999999876531      111220                      000              


Q ss_pred             -------EEEEEEEeC-CeeEEEEEEeCCCcc-------------ccccchHhhhcCCc-EEEEEEeCCChhHHHHHHHH
Q psy12922         44 -------FKQKIIDLD-DVPTKLQIWDTAGQE-------------RFRTLTTAYYRGAM-GILLMYDVTNLESFQHLNYW  101 (184)
Q Consensus        44 -------~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~  101 (184)
                             .....+.+. .....+.+|||||..             .+..+...++...+ ++++|+|++....-.....+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                   000000010 112358999999953             23345556666555 45556666542221122223


Q ss_pred             HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH--HHHhcC-CCEEEeecCCCCCHHHHHHHHHH
Q psy12922        102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM--LADNYS-LPFYEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      +..+          ...+.|+++|+||+|+.+...........  +....+ .+++.+||++|.|++++++++.+
T Consensus       190 ~~~~----------~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEV----------DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH----------CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHh----------CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333          23578999999999997543321111110  001112 24677999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.73  E-value=4.8e-18  Score=120.31  Aligned_cols=156  Identities=16%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCcccccccee--------------EEEEEEEeC----------------Cee
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGID--------------FKQKIIDLD----------------DVP   55 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~   55 (184)
                      ...+|+++|.+|||||||+++|...............+              .....+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            34789999999999999999998752211100000000              011111110                012


Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +.+.+|||+|...   ....+....+.+++|+|+++....  ...+.   ..          .+.|+++|+||+|+....
T Consensus       109 ~d~iiidt~G~~~---~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~----------~~~~~iiv~NK~Dl~~~~  170 (221)
T 2wsm_A          109 CDLLLIENVGNLI---CPVDFDLGENYRVVMVSVTEGDDV--VEKHP---EI----------FRVADLIVINKVALAEAV  170 (221)
T ss_dssp             CSEEEEEEEEBSS---GGGGCCCSCSEEEEEEEGGGCTTH--HHHCH---HH----------HHTCSEEEEECGGGHHHH
T ss_pred             CCEEEEeCCCCCC---CCchhccccCcEEEEEeCCCcchh--hhhhh---hh----------hhcCCEEEEecccCCcch
Confidence            3588999998411   001111256889999998765321  11111   11          146889999999986422


Q ss_pred             cccHHHHHHHHHhc--CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        136 AVQTKDAQMLADNY--SLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       136 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ..............  +++++++||++|.|+++++++|.+.+....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            23344444444433  578999999999999999999998876544

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.72  E-value=1.2e-16  Score=120.81  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-------------------eeEEEEEEeCCCccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------------------VPTKLQIWDTAGQER   68 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~G~~~   68 (184)
                      ++|+++|.||||||||+++|++........+.++.........+++                   .+..+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998653323333333322222222322                   245699999999765


Q ss_pred             cc----cch---HhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHH-------------------------
Q psy12922         69 FR----TLT---TAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIE-------------------------  106 (184)
Q Consensus        69 ~~----~~~---~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~-------------------------  106 (184)
                      +.    .+.   ...++.+|++++|+|+++.          +...+...+..++.                         
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            43    222   2357899999999999851          22222211111110                         


Q ss_pred             ----------Hh---cccCC--------------CCCCCCCeEEEEEeCCCCC--CC-ccccHHHHHHHHHhcCCCEEEe
Q psy12922        107 ----------EV---GCNSN--------------QNASPDVVKVLAGNKSDVK--TQ-RAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus       107 ----------~~---~~~~~--------------~~~~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                                ..   +...+              ......+|+++++||.|..  +. +......+.+++...+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                      00   00000              0112348999999999842  22 1234556777888888999999


Q ss_pred             ecCCCCCHHHH
Q psy12922        157 SCKQNINIDEA  167 (184)
Q Consensus       157 Sa~~~~gv~~~  167 (184)
                      ||+...++.++
T Consensus       242 SAk~E~el~eL  252 (368)
T 2dby_A          242 SARLEAELAEL  252 (368)
T ss_dssp             CHHHHHHHHTS
T ss_pred             echhHHHHHHh
Confidence            99875544433

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.71  E-value=4.1e-16  Score=117.92  Aligned_cols=154  Identities=14%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc----cc---hHhhhcC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR----TL---TTAYYRG   79 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~~~~   79 (184)
                      ..+|+++|.||||||||+|+|++........|++|.+.....+.+++..  ++++||||.....    ..   ....++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            3689999999999999999999987777778888888888888888765  8999999954221    11   1234578


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--------CccccHHHHHHHHHhcCC
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--------QRAVQTKDAQMLADNYSL  151 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~  151 (184)
                      +|++++|+|+++|.  .+......++.....     ...+.|.++++||.|...        ...........+.....+
T Consensus       150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~-----~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          150 CNLLFIILDVNKPL--HHKQIIEKELEGVGI-----RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             CSEEEEEEETTSHH--HHHHHHHHHHHHTTE-----EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             cCccccccccCccH--HHHHHHHHHHHHhhH-----hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            99999999999873  334444444544321     224678899999999742        123344455555555544


Q ss_pred             CEEEeecCCCCCHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFL  169 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~  169 (184)
                      ..-++--..+...+++.+
T Consensus       223 t~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          223 NSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             CSEEEEECSCCCHHHHHH
T ss_pred             cCCCeeecccCCHHHHHH
Confidence            333333344455555443

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.71  E-value=3.2e-16  Score=124.28  Aligned_cols=115  Identities=14%  Similarity=0.079  Sum_probs=80.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC----------------------CCccccccceeEEEEEEEeCCeeEEEEEEeC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY----------------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDT   63 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~   63 (184)
                      +.-+|+|+|+.++|||||..+|+...-                      ..+..+..++......+.+.+  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            456899999999999999999963110                      112222233323333344444  56999999


Q ss_pred             CCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      ||+..|..-....++-+|++++|+|+..+-..+...-| ..+..          .++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----------~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----------RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----------TTCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----------hCCceEEEEecccchh
Confidence            99999998888899999999999999977544444444 44444          5899999999999743

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.69  E-value=6.6e-17  Score=133.91  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhCcC--C--------------Cccccccce--eEEEEEEE------------e
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY--Y--------------DTYISTIGI--DFKQKIID------------L   51 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~--------------~~~~~~~~~--~~~~~~~~------------~   51 (184)
                      .+.+...+|+|+|++|+|||||+++|+....  .              .+..+..+.  ......+.            .
T Consensus        14 ~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~   93 (842)
T 1n0u_A           14 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT   93 (842)
T ss_dssp             HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred             hCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence            3456678999999999999999999986421  0              011111121  11222222            2


Q ss_pred             CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922         52 DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV  131 (184)
Q Consensus        52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (184)
                      ++..+.+.+|||||+..|...+..+++.+|++++|+|++++.+.+....|.... .          .++|+++|+||+|+
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----------~~~p~ilviNK~D~  162 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----------ERIKPVVVINKVDR  162 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----------TTCEEEEEEECHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----------cCCCeEEEEECCCc
Confidence            344678999999999999999999999999999999999887776665554333 2          47899999999998


Q ss_pred             C
Q psy12922        132 K  132 (184)
Q Consensus       132 ~  132 (184)
                      .
T Consensus       163 ~  163 (842)
T 1n0u_A          163 A  163 (842)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.69  E-value=4.2e-19  Score=126.16  Aligned_cols=154  Identities=16%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEE------------EEEEEeC-Ce------------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFK------------QKIIDLD-DV------------------   54 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   54 (184)
                      ...+|+++|.+|||||||+++|....+.....++...++.            ...+..+ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999986554333333333322            1111111 10                  


Q ss_pred             -eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         55 -PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        55 -~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                       ...+.++|++|.-..   ...+-...+..+.++|.........  .. ...            ...|.++|+||+|+..
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~------------~~~~~iiv~NK~Dl~~  178 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KH-PGI------------MKTADLIVINKIDLAD  178 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH------------HTTCSEEEEECGGGHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hh-hhH------------hhcCCEEEEeccccCc
Confidence             013555666662100   0111123455566776532211100  00 001            1467899999999865


Q ss_pred             CccccHHHHHHHHHhc--CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        134 QRAVQTKDAQMLADNY--SLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       134 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .+..........+...  +++++++||++|.|++++|++|.+.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          179 AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3333444555555543  6789999999999999999999887754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.68  E-value=2.6e-17  Score=124.04  Aligned_cols=103  Identities=13%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +.+.++||+|...   ........+|++++|+|++.++..+.+..   .+            ...|.++|+||+|+....
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------------l~~~~ivVlNK~Dl~~~~  228 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI------------IEMADLVAVTKSDGDLIV  228 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC---------------------------CCSCSEEEECCCSGGGHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------------HhcCCEEEEeeecCCCch
Confidence            3489999999532   12445678999999999987643221111   11            245789999999986321


Q ss_pred             cccHHHHHHHHH----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        136 AVQTKDAQMLAD----------NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       136 ~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ... .....+..          .++.+++.+||++|.|+++++++|.+.+..
T Consensus       229 ~~~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          229 PAR-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHH-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            110 11111211          124578999999999999999999887643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.65  E-value=1.7e-16  Score=125.96  Aligned_cols=120  Identities=18%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC---CccccccceeEEEE----------------------------------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY---DTYISTIGIDFKQK----------------------------------   47 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~----------------------------------   47 (184)
                      +...+|+|+|.+|+|||||+|+|++..+.   ....++++......                                  
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999997753   33333332111000                                  


Q ss_pred             --EEEeCCe-eEEEEEEeCCCccc-----------cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCC
Q psy12922         48 --IIDLDDV-PTKLQIWDTAGQER-----------FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN  113 (184)
Q Consensus        48 --~~~~~~~-~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  113 (184)
                        ....++. ...+.+|||||...           +......++..+|++++|+|+++.........++..+.       
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------  215 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-------  215 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-------
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-------
Confidence              0000000 02489999999754           34556677889999999999987544444455554443       


Q ss_pred             CCCCCCCeEEEEEeCCCCCCC
Q psy12922        114 QNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus       114 ~~~~~~~p~ivv~nK~D~~~~  134 (184)
                         ....|+++|+||+|+...
T Consensus       216 ---~~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          216 ---GHEDKIRVVLNKADMVET  233 (550)
T ss_dssp             ---TCGGGEEEEEECGGGSCH
T ss_pred             ---hcCCCEEEEEECCCccCH
Confidence               246899999999998753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.62  E-value=1.3e-15  Score=114.52  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +.+.++||||......   .....+|++++|+|++.++.+..+..   ..            .+.|.++|+||+|+....
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------------~~~p~ivv~NK~Dl~~~~  210 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------------MEVADLIVINKDDGDNHT  210 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------------HHHCSEEEECCCCTTCHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------------hcccCEEEEECCCCCChH
Confidence            4599999999654332   34689999999999976543211111   00            146789999999987532


Q ss_pred             cccH--HHHHHHHHhc-------CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        136 AVQT--KDAQMLADNY-------SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       136 ~~~~--~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ....  ..........       ..+++++||++|.|+++++++|.+.+.
T Consensus       211 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          211 NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1111  1122211111       357899999999999999999988765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.61  E-value=3.6e-16  Score=113.41  Aligned_cols=116  Identities=10%  Similarity=-0.011  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCccccccchH------hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTLTT------AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.+|||||..+......      ..+.. +++++++|....................      ....+.|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~------~~~~~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI------DLRLGATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH------HHHHTSCEEEEECCG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH------hcccCCCeEEEEecc
Confidence            4699999999765433211      23455 8888999875432222221111101000      012368999999999


Q ss_pred             CCCCCccccHH--------HH-HH-----------------HHHhc--CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        130 DVKTQRAVQTK--------DA-QM-----------------LADNY--SLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       130 D~~~~~~~~~~--------~~-~~-----------------~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      |+....+....        .. ..                 ++...  .++++++||++|.|+++++++|.+.+...
T Consensus       182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            98753221100        00 00                 11232  35899999999999999999999887654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.61  E-value=9.7e-16  Score=124.56  Aligned_cols=158  Identities=13%  Similarity=0.045  Sum_probs=95.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-CCcccccccee-----------------------------------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGID-----------------------------------------   43 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~-----------------------------------------   43 (184)
                      .-.+|+|+|.+++|||||+|+|++..+ +......+...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            347999999999999999999999765 22211111100                                         


Q ss_pred             ---------EEEEEEEeCCeeEEEEEEeCCCccc-------------cccchHhhh-cCCcEEEEEEeCCChhHHHHHHH
Q psy12922         44 ---------FKQKIIDLDDVPTKLQIWDTAGQER-------------FRTLTTAYY-RGAMGILLMYDVTNLESFQHLNY  100 (184)
Q Consensus        44 ---------~~~~~~~~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~  100 (184)
                               .....+..++. ..+.++||||...             ...+...++ ..+|++++|+|++.+....+...
T Consensus       130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                     00111111111 1378999999533             122333444 57899999999986533323223


Q ss_pred             HHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH--hcC-CCEEEeecCCCCCHHHHHHHHHHH
Q psy12922        101 WLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD--NYS-LPFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ++..+.          ..+.|+++|+||+|+................  ..+ .+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L~----------~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVD----------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHC----------TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH----------hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            333332          3578999999999997643332221110000  012 356778999999999999988763

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.60  E-value=9.3e-16  Score=123.79  Aligned_cols=112  Identities=20%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc--CC----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET--YY----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   69 (184)
                      -||+|+|+.++|||||..+|+...  ..                .+..+..++  ......+....+.++|+||||+..|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI--~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITI--QTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCS--SCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcE--EeeeEEEEECCEEEEEEECCCcHHH
Confidence            479999999999999999987411  10                011112222  2222223333456999999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      ..-....++-+|++++|+|+..+-..+...-| ..+..          .++|.++++||+|..
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----------~~lp~i~~INKmDr~  132 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----------MGIPTIFFINKIDQN  132 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----------HTCSCEECCEECCSS
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----------cCCCeEEEEeccccc
Confidence            98888899999999999999976443333333 33443          378999999999974

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.60  E-value=3.3e-14  Score=116.13  Aligned_cols=117  Identities=19%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCc--------C----------CCccccccceeEEEEEEEeCC-----eeEEEEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDET--------Y----------YDTYISTIGIDFKQKIIDLDD-----VPTKLQIW   61 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~   61 (184)
                      ++--+|+|+|+.++|||||..+|+...        .          ..+..+..++......+.+.+     ..+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            455689999999999999999987321        1          011222223222223333322     35789999


Q ss_pred             eCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         62 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        62 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      ||||+..|..-....++-+|++++|+|+..+-..+...-|.....           .++|.++|+||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-----------~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-----------YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-----------HTCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-----------cCCCeEEEEcccccc
Confidence            999999999888888999999999999997654444444444443           389999999999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.60  E-value=3.1e-15  Score=112.24  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=63.5

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +.+.++||+|...-   .......+|.+++++|...++..+.+...   +            ...|.++++||+|+....
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------------~~~~~ivvlNK~Dl~~~~  209 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---I------------FELADMIAVNKADDGDGE  209 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---H------------HHHCSEEEEECCSTTCCH
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---H------------hccccEEEEEchhccCch
Confidence            45899999996432   12345789999999998755332111111   1            123557888999975422


Q ss_pred             cccHHHHHHHHHh----------cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        136 AVQTKDAQMLADN----------YSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       136 ~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .........+...          +..+++.+||+++.|++++++.|.+...
T Consensus       210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          210 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2222222222221          1457899999999999999999988665

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.53  E-value=8.5e-13  Score=100.41  Aligned_cols=88  Identities=18%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQE   67 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~   67 (184)
                      -....+|+++|++|||||||+|+|++... .....|+++.+.....+.+++.               +..+.++|+||..
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            34567999999999999999999999766 5666777776666666666652               2358999999953


Q ss_pred             c-------cccchHhhhcCCcEEEEEEeCCC
Q psy12922         68 R-------FRTLTTAYYRGAMGILLMYDVTN   91 (184)
Q Consensus        68 ~-------~~~~~~~~~~~~d~~i~v~d~~~   91 (184)
                      .       +.......++.+|++++|+|+.+
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3       22233455688999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.50  E-value=4.1e-14  Score=107.47  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcccc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERF   69 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~   69 (184)
                      ....+|+++|.+|||||||+|+|++........|+++.+.....+.+++.               +..+.+||+||...+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999997765566677776666666655542               345999999997654


Q ss_pred             cc-------chHhhhcCCcEEEEEEeCCCh
Q psy12922         70 RT-------LTTAYYRGAMGILLMYDVTNL   92 (184)
Q Consensus        70 ~~-------~~~~~~~~~d~~i~v~d~~~~   92 (184)
                      ..       ....+++.+|++++|+|+++.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       345677899999999999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.48  E-value=1.5e-13  Score=101.71  Aligned_cols=97  Identities=20%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             ccccccchHhhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHH
Q psy12922         66 QERFRTLTTAYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQ  143 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~  143 (184)
                      ++++..+...++.++|++++|+|+++|+ ++..+..|+..+..          .++|+++|+||+|+.+..++. .....
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----------~~~~~ilV~NK~DL~~~~~v~~~~~~~  135 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----------FKVEPVIVFNKIDLLNEEEKKELERWI  135 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----------TTCEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----------CCCCEEEEEEcccCCCccccHHHHHHH
Confidence            5666777778899999999999999986 78778888887654          579999999999997643222 34455


Q ss_pred             HHHHhcCCCEEEeecCCCCCHHHHHHHHH
Q psy12922        144 MLADNYSLPFYEVSCKQNINIDEAFLTLA  172 (184)
Q Consensus       144 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  172 (184)
                      .++...+.+++++||++|.|++++++.+.
T Consensus       136 ~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          136 SIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            66667788999999999999999987754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.40  E-value=3.5e-13  Score=93.15  Aligned_cols=110  Identities=5%  Similarity=-0.095  Sum_probs=68.9

Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC-CCCCCccccHHH
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS-DVKTQRAVQTKD  141 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~  141 (184)
                      .+|+..++.+|..|++++|++|||+|.++.+..+ .+..+.++.....  +.....++|++|++||. |+..  .+...+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~--ee~~L~gapLLVlANKqqDlp~--Ams~~E  183 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTD--PAFGSSGRPLLVLSCISQGDVK--RMPCFY  183 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSC--TTSSCSCSCEEEEEEESSTTSC--BCCHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhc--chhhhCCCeEEEEeCCCcCccC--CCCHHH
Confidence            3478889999999999999999999999876544 3333322221100  00123689999999995 6653  444443


Q ss_pred             HHHHHH----hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        142 AQMLAD----NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       142 ~~~~~~----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +.+...    .....+..|||++|+|+.+.++||.+.+..
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            322211    234568899999999999999999876643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.25  E-value=8e-12  Score=90.41  Aligned_cols=107  Identities=3%  Similarity=-0.091  Sum_probs=72.8

Q ss_pred             CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHH---HHHHhcccCCCCCCCCCeEEEEEeC-CCCCCCcccc
Q psy12922         63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLK---NIEEVGCNSNQNASPDVVKVLAGNK-SDVKTQRAVQ  138 (184)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~nK-~D~~~~~~~~  138 (184)
                      .+|+...+..|..|++++|++|||+|.++.+.++ .+..+.   .+....     ....+.|++|++|| .|+..  .+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~-----~~l~~apLLVfANKkQDlp~--Ams  265 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA-----FGSSGRPLLVLSCISQGDVK--RMP  265 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHH-----HHCTTCCEEEEEEESSTTSC--BCC
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcch-----hhcCCCeEEEEeCCcccccC--CCC
Confidence            4678889999999999999999999999887654 222222   222110     11368999999997 57754  444


Q ss_pred             HHHHHHHHH----hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        139 TKDAQMLAD----NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       139 ~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ..++.+...    .....+..|||.+|+|+.+.++||.+.+..
T Consensus       266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            433322211    123458899999999999999999987654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.20  E-value=2.7e-12  Score=97.38  Aligned_cols=141  Identities=16%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------c
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------L   72 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~   72 (184)
                      ..+|+++|.+|+|||||+|+|.+.      .......+.++.....  +.....   +.++||||......        .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999986      2333334444433332  323322   78999999532221        1


Q ss_pred             hHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922         73 TTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS  150 (184)
Q Consensus        73 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (184)
                      ...++  ...+.++++++.........+..    +..       ....+.|+++++||.|...... .......+.+..+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~-------l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g  304 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDY-------IKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLG  304 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEE-------EESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBT
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEE-------ccCCCceEEEEecCCccccccc-HHHHHHHHHHhcC
Confidence            12222  56799999998842211111100    111       2345789999999999865333 2333445556667


Q ss_pred             CCEEEeecCCCCCH
Q psy12922        151 LPFYEVSCKQNINI  164 (184)
Q Consensus       151 ~~~~~~Sa~~~~gv  164 (184)
                      ..+.+.++.+..++
T Consensus       305 ~~l~p~~~~~~~~~  318 (369)
T 3ec1_A          305 ELLSPPSKRYAAEF  318 (369)
T ss_dssp             TTBCSSCGGGTTTC
T ss_pred             CccCCCCchhhhhc
Confidence            66666666555443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.11  E-value=6.5e-11  Score=92.78  Aligned_cols=152  Identities=16%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh------CcC---CC-ccccc-----------cceeEEEEEEE-------------
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD------ETY---YD-TYIST-----------IGIDFKQKIID-------------   50 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~------~~~---~~-~~~~~-----------~~~~~~~~~~~-------------   50 (184)
                      .....|+++|.+||||||+++.|..      ...   .. .+.+.           .+..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999983      221   00 00010           01111110000             


Q ss_pred             eCCeeEEEEEEeCCCcccccc-chH---hh--hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-E
Q psy12922         51 LDDVPTKLQIWDTAGQERFRT-LTT---AY--YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-V  123 (184)
Q Consensus        51 ~~~~~~~~~l~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i  123 (184)
                      .....+.+.|+||||...... ...   ..  +..+|.+++|+|+......   ......+..           ..|+ .
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----------~~~i~g  244 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----------KVDVAS  244 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----------HHCCCC
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----------hcCceE
Confidence            000234589999999653211 111   11  2378999999999865321   122222322           2564 8


Q ss_pred             EEEeCCCCCCCccccHHHHHHHHHhcCCCE------------------EEeecCCCCC-HHHHHHHHHHH
Q psy12922        124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPF------------------YEVSCKQNIN-IDEAFLTLARL  174 (184)
Q Consensus       124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-v~~~~~~l~~~  174 (184)
                      +|+||.|.......    ........++|+                  +.+|+..|.| +.++++++.+.
T Consensus       245 vVlNK~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          245 VIVTKLDGHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             EEEECTTSCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             EEEeCCccccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99999998642211    112233444443                  3368999999 99999888765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.08  E-value=6.4e-10  Score=85.29  Aligned_cols=140  Identities=12%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCcc----ccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-------cc----
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-------RT----   71 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~----   71 (184)
                      .++++|+|++|||||||++.|.+..+....    .+..............+....+.++|++|....       ..    
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            367999999999999999999986532111    111111111111222233335789999884321       00    


Q ss_pred             ---ch----Hhh---------hcCC--c-EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         72 ---LT----TAY---------YRGA--M-GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        72 ---~~----~~~---------~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                         .+    ..+         ...+  | +++|+.|...+-+..+    ..-+..       . ..++|+++|+||+|..
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~-------L-~~~~~vI~Vi~KtD~L  189 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKK-------L-DSKVNIIPIIAKADAI  189 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHH-------T-CSCSEEEEEESCGGGS
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHH-------H-hhCCCEEEEEcchhcc
Confidence               01    111         0111  2 3555666654322222    122222       2 2689999999999986


Q ss_pred             CCccccHH--HHHHHHHhcCCCEEEeec
Q psy12922        133 TQRAVQTK--DAQMLADNYSLPFYEVSC  158 (184)
Q Consensus       133 ~~~~~~~~--~~~~~~~~~~~~~~~~Sa  158 (184)
                      ...+....  .+.......+++++.+|.
T Consensus       190 t~~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          190 SKSELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             CHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             chHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence            53332221  122222344677666664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=1e-11  Score=94.19  Aligned_cols=135  Identities=13%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC-------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc----h---
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY-------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----T---   73 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----~---   73 (184)
                      .+|+++|.+|+|||||+|+|.+...       .....+.++...  ..+.....   +.++||||.......    .   
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            5899999999999999999998531       112233333222  22333332   789999995332211    1   


Q ss_pred             -Hhh--hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922         74 -TAY--YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS  150 (184)
Q Consensus        74 -~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (184)
                       ..+  ....+.++++++.........+..    +..       ....+.|+++++||.|...... .......+.+..+
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~-------l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g  303 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDY-------VSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAG  303 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEE-------EESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBT
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE----EEE-------ecCCCceEEEEecCcccccccc-HHHHHHHHHHHhC
Confidence             111  256788899998742111111100    111       2345789999999999875322 2333344555566


Q ss_pred             CCEEEeecC
Q psy12922        151 LPFYEVSCK  159 (184)
Q Consensus       151 ~~~~~~Sa~  159 (184)
                      ..+.+.++.
T Consensus       304 ~~l~p~~~~  312 (368)
T 3h2y_A          304 DLLSPPTPE  312 (368)
T ss_dssp             TTBCSSCHH
T ss_pred             CccCCCchh
Confidence            555444443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=5.1e-10  Score=84.87  Aligned_cols=97  Identities=14%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc---ccHHH
Q psy12922         65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA---VQTKD  141 (184)
Q Consensus        65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~  141 (184)
                      ..+.|...+..+.+.++++++|+|++++.     ..|...+...        ..+.|+++|+||+|+.....   .....
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--------~~~~p~ilV~NK~DL~~~~~~~~~~~~~  121 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--------VGNNKVLLVGNKADLIPKSVKHDKVKHW  121 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--------SSSSCEEEEEECGGGSCTTSCHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--------hCCCcEEEEEEChhcCCcccCHHHHHHH
Confidence            35678888889999999999999999863     3455555543        23789999999999965322   11122


Q ss_pred             HHHHHHhcCC---CEEEeecCCCCCHHHHHHHHHHH
Q psy12922        142 AQMLADNYSL---PFYEVSCKQNINIDEAFLTLARL  174 (184)
Q Consensus       142 ~~~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~  174 (184)
                      ....+...+.   +++.+||++|.|+++++++|.+.
T Consensus       122 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          122 MRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            3344566676   68999999999999999988664

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.03  E-value=2.5e-09  Score=81.92  Aligned_cols=159  Identities=11%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCcccccc-ceeE--EEEEEEeCCeeEEEEEEeCCCccccccchHhh-----hc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTI-GIDF--KQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY-----YR   78 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~~   78 (184)
                      ...++|+|++|||||||+|.+.+........-.. +.+.  ......... .-.+.++|++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3579999999999999999999843211111000 0000  011111111 1137889999853222122222     23


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC---------C--CccccHHHHHHHH-
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK---------T--QRAVQTKDAQMLA-  146 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---------~--~~~~~~~~~~~~~-  146 (184)
                      ..+..++ ++...+  ..........+..          .+.|+++|.||.|+.         +  .+..-...+..+. 
T Consensus       148 ~~~~~~~-lS~G~~--~kqrv~la~aL~~----------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~  214 (413)
T 1tq4_A          148 EYDFFII-ISATRF--KKNDIDIAKAISM----------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV  214 (413)
T ss_dssp             GCSEEEE-EESSCC--CHHHHHHHHHHHH----------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCc--cHHHHHHHHHHHh----------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence            3355554 776521  1112223333333          368999999999972         1  1111112223332 


Q ss_pred             ---HhcC---CCEEEeec--CCCCCHHHHHHHHHHHHHHHH
Q psy12922        147 ---DNYS---LPFYEVSC--KQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       147 ---~~~~---~~~~~~Sa--~~~~gv~~~~~~l~~~~~~~~  179 (184)
                         ...+   ..++.+|+  .++.|++++.+.+.+.+.+.+
T Consensus       215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence               1222   36788999  566679999999988776544

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.03  E-value=7.1e-10  Score=80.62  Aligned_cols=116  Identities=18%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCcc-------ccccceeEEEEEEEe--CCeeEEEEEEeCCCccccc---c---
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTY-------ISTIGIDFKQKIIDL--DDVPTKLQIWDTAGQERFR---T---   71 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~---~---   71 (184)
                      .++++++|++|||||||++.|.+.......       ....+.......+..  .+....+.++|++|.....   .   
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            578999999999999999999874332111       000000001111111  1222357899999832100   0   


Q ss_pred             chH----------------------hhhcCCcEEEEEEeCC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         72 LTT----------------------AYYRGAMGILLMYDVT-NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        72 ~~~----------------------~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      ...                      ..+..+++.++++|.. .+-...+ ...+..+..          . +++++|+||
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----------~-~~vI~Vi~K  149 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----------V-VNIIPVIAK  149 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----------T-SEEEEEETT
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----------c-CcEEEEEec
Confidence            000                      0122357888888864 3322222 233444432          2 899999999


Q ss_pred             CCCCCC
Q psy12922        129 SDVKTQ  134 (184)
Q Consensus       129 ~D~~~~  134 (184)
                      .|....
T Consensus       150 ~D~lt~  155 (270)
T 3sop_A          150 ADTMTL  155 (270)
T ss_dssp             GGGSCH
T ss_pred             cccCCH
Confidence            998653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.91  E-value=1.7e-09  Score=82.08  Aligned_cols=98  Identities=14%  Similarity=0.239  Sum_probs=70.5

Q ss_pred             CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc---ccHHH
Q psy12922         65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA---VQTKD  141 (184)
Q Consensus        65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~  141 (184)
                      .++.|...+..+...++++++|+|++++.+     .|...+...        ..+.|+++|+||+|+.....   .....
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--------l~~~piilV~NK~DLl~~~~~~~~~~~~  123 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--------AADNPILLVGNKADLLPRSVKYPKLLRW  123 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--------CTTSCEEEEEECGGGSCTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--------hCCCCEEEEEEChhcCCCccCHHHHHHH
Confidence            367888888888899999999999998763     334444432        23789999999999975321   11222


Q ss_pred             HHHHHHhcCC---CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        142 AQMLADNYSL---PFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       142 ~~~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      ....+...+.   .++.+||++|.|++++++.+.+..
T Consensus       124 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3334566666   689999999999999998887643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.82  E-value=1.1e-08  Score=74.73  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             EEeCCCcc-ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc
Q psy12922         60 IWDTAGQE-RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ  138 (184)
Q Consensus        60 l~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (184)
                      +...||+. .........+.++|+++.|+|+.+|.+...     ..+...        ..++|.++|+||+|+....  .
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~--------l~~kp~ilVlNK~DL~~~~--~   67 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDI--------LKNKPRIMLLNKADKADAA--V   67 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHH--------CSSSCEEEEEECGGGSCHH--H
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHH--------HCCCCEEEEEECcccCCHH--H
Confidence            44678864 233344566789999999999999876532     112221        1478999999999997521  1


Q ss_pred             HHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        139 TKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ......+....+.+++.+||+++.|++++++.+.+.+...
T Consensus        68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            1122333345578999999999999999999888877643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.78  E-value=7.2e-09  Score=75.79  Aligned_cols=58  Identities=21%  Similarity=0.372  Sum_probs=35.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE   67 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   67 (184)
                      ...++|+++|.||+|||||+|+|.+... .....+.++....  .+....   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            4568999999999999999999998653 3333444443332  222322   38899999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.69  E-value=1.2e-07  Score=73.06  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC------cC---C-Ccccc-----------ccceeEEEEEEEeC------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE------TY---Y-DTYIS-----------TIGIDFKQKIIDLD------------   52 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~------~~---~-~~~~~-----------~~~~~~~~~~~~~~------------   52 (184)
                      ....|+++|++||||||++..|...      .+   . +.+.+           ..+.++.......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999888631      11   0 00000           01111111000000            


Q ss_pred             -CeeEEEEEEeCCCcccccc-----ch-HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         53 -DVPTKLQIWDTAGQERFRT-----LT-TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        53 -~~~~~~~l~D~~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                       ...+.+.|+||+|......     +. .......|.+++|+|+......   ......+..          .-.+..+|
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~----------~~~i~gVI  245 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE----------ATPIGSII  245 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----------SCTTEEEE
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh----------hCCCeEEE
Confidence             0124589999999432211     11 0122357899999999864322   222233332          22455799


Q ss_pred             EeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922        126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus       126 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      +||.|.....    -.+.......+.|+..++.  |++++
T Consensus       246 lTKlD~~~~g----G~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          246 VTKLDGSAKG----GGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             EECCSSCSSH----HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             EECCCCcccc----cHHHHHHHHHCCCEEEEEc--CCChH
Confidence            9999976421    2234455567888887775  66553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.65  E-value=8.4e-08  Score=74.09  Aligned_cols=83  Identities=19%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCcccccc-chH---h--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCC-e-EEEEEe
Q psy12922         56 TKLQIWDTAGQERFRT-LTT---A--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV-V-KVLAGN  127 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~n  127 (184)
                      +.+.++||||...... ...   .  .+..+|.+++|+|+..+.   +.......+.           ... | ..+|+|
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----------~~~~~i~gvVln  246 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK-----------EAVGEIGSIIVT  246 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH-----------TTSCSCEEEEEE
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh-----------hcccCCeEEEEe
Confidence            4589999999643211 111   1  122689999999987543   2222222222           234 4 889999


Q ss_pred             CCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922        128 KSDVKTQRAVQTKDAQMLADNYSLPFYEV  156 (184)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
                      |.|.....    .....+....+.|+..+
T Consensus       247 K~D~~~~~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          247 KLDGSAKG----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             CSSSCSTT----HHHHHHHHHSSCCEEEE
T ss_pred             CCCCccch----HHHHHHHHHHCCCEEEe
Confidence            99975321    12233556667665544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.62  E-value=2.1e-08  Score=72.55  Aligned_cols=56  Identities=21%  Similarity=0.327  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER   68 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   68 (184)
                      ++|+++|.+|+|||||+|+|.+.... ....+.++...  ..+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence            58999999999999999999986642 22223222222  2222222   378999999654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.58  E-value=5.2e-08  Score=77.75  Aligned_cols=63  Identities=13%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc---ccceeEEEEEEEe-CCeeEEEEEEeCCCcc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS---TIGIDFKQKIIDL-DDVPTKLQIWDTAGQE   67 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~   67 (184)
                      ....+|+|+|.||+|||||+|+|.+.........   ..+.....+.... ......+.++||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            3468899999999999999999998653211111   1111121111111 1223458999999954

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.44  E-value=1.1e-06  Score=64.69  Aligned_cols=91  Identities=15%  Similarity=0.048  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCccc--ccc-chH-----hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEE
Q psy12922         56 TKLQIWDTAGQER--FRT-LTT-----AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAG  126 (184)
Q Consensus        56 ~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~  126 (184)
                      +.+.++||||...  ... +..     ..+..+|.+++|+|+....   +.......+..           ..| ..+|+
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----------~~~i~gvVl  246 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----------ASKIGTIII  246 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----------TCTTEEEEE
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----------hCCCCEEEE
Confidence            4589999999765  211 111     1234689999999987432   22222223322           244 67899


Q ss_pred             eCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922        127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       127 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||.|....    ......+....+.|+..++  .|+++++
T Consensus       247 nk~D~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          247 TKMDGTAK----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ECGGGCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             eCCCCCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            99997531    2234556777888887776  5666643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.42  E-value=2.9e-07  Score=70.96  Aligned_cols=90  Identities=14%  Similarity=0.047  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCccc--ccc-c---hHh--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         56 TKLQIWDTAGQER--FRT-L---TTA--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        56 ~~~~l~D~~G~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      +.+.++||||...  ... .   ...  .....+.+++|+|+......   ......+..          .-.+..+|+|
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~----------~~~~~gVIlT  246 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQ----------ASPIGSVIIT  246 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHH----------HCSSEEEEEE
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhc----------ccCCcEEEEe
Confidence            4588999999533  111 1   111  11246899999999865322   222333332          1245789999


Q ss_pred             CCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922        128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      |.|....    .-.........+.|+..++.  |+++
T Consensus       247 KlD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          247 KMDGTAK----GGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             CGGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ccccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence            9997632    22234445567889887775  6665

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.35  E-value=1.4e-06  Score=62.97  Aligned_cols=92  Identities=10%  Similarity=-0.019  Sum_probs=59.4

Q ss_pred             CCcccc-ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH
Q psy12922         64 AGQERF-RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA  142 (184)
Q Consensus        64 ~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  142 (184)
                      ||+... .......+.++|+++.|+|+.+|.+....     .+. .      .   ++|.++|+||+|+.+...  ....
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l------l---~k~~iivlNK~DL~~~~~--~~~~   67 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F------S---RKETIILLNKVDIADEKT--TKKW   67 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C------T---TSEEEEEEECGGGSCHHH--HHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h------c---CCCcEEEEECccCCCHHH--HHHH
Confidence            555322 22345667899999999999988654211     000 0      1   789999999999976311  1122


Q ss_pred             HHHHHhcCCCEEEeecCCCCCHHHHHHHHHH
Q psy12922        143 QMLADNYSLPFYEVSCKQNINIDEAFLTLAR  173 (184)
Q Consensus       143 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  173 (184)
                      ..+....+.++ .+||+++.|++++++.+.+
T Consensus        68 ~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           68 VEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            33344567888 9999999999998877643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.35  E-value=3e-07  Score=67.85  Aligned_cols=87  Identities=13%  Similarity=0.117  Sum_probs=60.4

Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--cHHHHHHHHHhc
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--QTKDAQMLADNY  149 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~  149 (184)
                      ....+.++|.+++|+|+.+|..-.. +..++....          ..++|.++|+||+|+.+..+.  ......+.....
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----------~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~  149 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----------ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI  149 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----------TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----------HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC
Confidence            3446789999999999998765333 333333332          357889999999999865331  123344555566


Q ss_pred             CCCEEEeecCCCCCHHHHHH
Q psy12922        150 SLPFYEVSCKQNINIDEAFL  169 (184)
Q Consensus       150 ~~~~~~~Sa~~~~gv~~~~~  169 (184)
                      +.+++.+||.++.|+++++.
T Consensus       150 g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          150 GYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             TCCEEECCHHHHTTCTTTGG
T ss_pred             CCeEEEEecCCCCCHHHHHh
Confidence            88999999999999876654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.30  E-value=1.4e-06  Score=70.19  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .|+|+|++|||||||++.+.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999998854

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.28  E-value=2.4e-06  Score=63.64  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccc---------------------cccceeEEEEEEEeC------------
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYI---------------------STIGIDFKQKIIDLD------------   52 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~------------   52 (184)
                      ..--|+++|++||||||+++.|.+........                     ...+..+........            
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            45678999999999999999987522110000                     000111111000000            


Q ss_pred             -CeeEEEEEEeCCCccccccch-H---h--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922         53 -DVPTKLQIWDTAGQERFRTLT-T---A--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA  125 (184)
Q Consensus        53 -~~~~~~~l~D~~G~~~~~~~~-~---~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (184)
                       ...+.+.++|++|........ .   .  -.-..|-.++++|.....   +.......+...          -....++
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~----------~~it~ii  274 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA----------VKIDGII  274 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----------SCCCEEE
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh----------cCCCEEE
Confidence             011236679999964322211 1   1  112468889999976542   233333333321          1234789


Q ss_pred             EeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922        126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       126 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +||.|....    .-.........+.|+..++  +|+++++
T Consensus       275 lTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          275 LTKLDADAR----GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             EECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             EeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            999996431    1224456667788888777  7776643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.15  E-value=2.1e-07  Score=72.72  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--cccch--------H
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--FRTLT--------T   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~--------~   74 (184)
                      ..+..|+++|.+||||||+.++|....... ..++.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999987643210 011110000000000011111246788888632  22222        4


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHH
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEE  107 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  107 (184)
                      .++....+.++|+|.++. +.+....|+..+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            556667888999999986 45566666666655

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.12  E-value=1.2e-05  Score=60.42  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             hhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHHHhcCCCE
Q psy12922         76 YYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLADNYSLPF  153 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~  153 (184)
                      .+.++|.+++|.+. +|.. ...+..++.....          .++|.++|+||+|+....... ...........+.++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----------~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v  195 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----------LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRV  195 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----------HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----------cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcE
Confidence            35789999988654 5654 3333444433333          367889999999998642211 112233345678899


Q ss_pred             EEeecCCCCCHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTL  171 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l  171 (184)
                      +.+||+++.|++++...+
T Consensus       196 ~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          196 LMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             EECBTTTTBTHHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHhc
Confidence            999999999999877543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.02  E-value=6.3e-06  Score=63.78  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...-|.|+|++++|||+|+|.|.+.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4566899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.79  E-value=1.3e-05  Score=54.40  Aligned_cols=23  Identities=35%  Similarity=0.732  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.76  E-value=1.8e-05  Score=54.08  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=22.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -...-.|+++|++||||||+++.|...
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            344456899999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.70  E-value=2e-05  Score=53.54  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++|+|++|||||||++.|...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.68  E-value=0.00041  Score=53.60  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=19.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~   28 (184)
                      ....|+++|.+|+||||++..|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678899999999999988876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.66  E-value=2.4e-05  Score=53.98  Aligned_cols=22  Identities=18%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.65  E-value=0.00018  Score=49.52  Aligned_cols=68  Identities=15%  Similarity=-0.009  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      +.+.++|+|+..  .......+..+|.+++++..+.. + ......++.+....     ...+..++.+|+|+.|..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~-----~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQ-----AYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTS-----CGGGCCEEEEEECSBCTT
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHH-----HhCCCCcEEEEEeccCCC
Confidence            568999999864  23345566779999999988654 3 66666666666521     114567789999999854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.62  E-value=1.8e-05  Score=58.39  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            368999999999999999998743

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.61  E-value=3.2e-05  Score=53.36  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.59  E-value=3.6e-05  Score=54.17  Aligned_cols=29  Identities=17%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      |........|+|+|.+||||||+++.|..
T Consensus         1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            1 MGASARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence            45555668899999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.59  E-value=4.6e-05  Score=52.95  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44578999999999999999998763

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.57  E-value=3.4e-05  Score=51.93  Aligned_cols=20  Identities=20%  Similarity=0.507  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q psy12922          9 KILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~   28 (184)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.56  E-value=4.1e-05  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++|+|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.56  E-value=0.00017  Score=53.10  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|||||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57999999999999999998 54

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.56  E-value=4.9e-05  Score=52.74  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....|+|+|++|||||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.53  E-value=5e-05  Score=50.91  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..|+++|++||||||+++.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998763

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.52  E-value=4.9e-05  Score=53.26  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57999999999999999998743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.52  E-value=4.9e-05  Score=53.36  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999998743

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.50  E-value=5.8e-05  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.49  E-value=5.8e-05  Score=52.45  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      --|+|+|++||||||+++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            458999999999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.49  E-value=6.3e-05  Score=50.29  Aligned_cols=20  Identities=25%  Similarity=0.321  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCchHHHHHHH
Q psy12922          8 YKILVLGDSNVGKTCIVHRF   27 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l   27 (184)
                      ..|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.48  E-value=7.3e-05  Score=51.72  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-|+|+|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.47  E-value=6e-05  Score=53.50  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999998744

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.47  E-value=6.5e-05  Score=50.20  Aligned_cols=21  Identities=14%  Similarity=0.240  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+|+|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.47  E-value=7.4e-05  Score=51.51  Aligned_cols=23  Identities=43%  Similarity=0.637  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-.|+++|++||||||+++.|..
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.46  E-value=6.8e-05  Score=51.13  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++++|++||||||+++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.46  E-value=6.7e-05  Score=51.74  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ..|+++|++||||||+++.|....
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.45  E-value=8.5e-05  Score=50.00  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+++|+|||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.45  E-value=0.00011  Score=49.40  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-.|+++|++||||||+++.|..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.44  E-value=8e-05  Score=51.87  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.44  E-value=0.00053  Score=47.61  Aligned_cols=67  Identities=9%  Similarity=-0.022  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCc-cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         55 PTKLQIWDTAGQ-ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        55 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      .+.+.++|+|+. ..  ......+..+|.+++++..+ ..++......++.+...       .  +.++.+|+|+.|...
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-------~--~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL-------G--NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-------C--SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc-------c--CCCEEEEEEecCCcc
Confidence            355899999876 33  23345667899999999875 45677777777777652       1  456889999998653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.44  E-value=7.9e-05  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.43  E-value=8.7e-05  Score=51.71  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.41  E-value=8.7e-05  Score=50.73  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.41  E-value=7.6e-05  Score=52.58  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.41  E-value=8.8e-05  Score=49.94  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998863

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.40  E-value=9.1e-05  Score=52.77  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~   28 (184)
                      -.|+|+|++||||||+++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.39  E-value=9.2e-05  Score=51.04  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+|+|.+||||||+++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.39  E-value=9.4e-05  Score=52.66  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.38  E-value=0.0001  Score=50.82  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|+|+|++||||||+++.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.37  E-value=0.00013  Score=49.45  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.00012  Score=50.49  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.36  E-value=0.00012  Score=50.88  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.35  E-value=0.00014  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.35  E-value=0.0001  Score=52.35  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998743

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.35  E-value=0.0001  Score=53.59  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998743

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.35  E-value=0.00011  Score=51.47  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.35  E-value=0.0001  Score=53.18  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.34  E-value=0.00014  Score=50.29  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999976

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.33  E-value=0.00018  Score=49.77  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=22.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .....|+|+|++||||||+++.|...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            44567999999999999999998874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.33  E-value=0.00011  Score=55.35  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|||||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999999754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.33  E-value=0.00013  Score=51.14  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+++|++||||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.33  E-value=0.00011  Score=52.84  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998744

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.33  E-value=0.00011  Score=53.21  Aligned_cols=23  Identities=13%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.33  E-value=0.00013  Score=50.09  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999876

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.33  E-value=0.00012  Score=50.25  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|++|||||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.33  E-value=0.00012  Score=52.78  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.32  E-value=0.00015  Score=51.57  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....+|+|+|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.32  E-value=0.00011  Score=51.20  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.32  E-value=0.00017  Score=49.66  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....|+|+|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999999875

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.32  E-value=0.00013  Score=52.03  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998743

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.31  E-value=0.00013  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.31  E-value=0.00014  Score=50.67  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++|+|+|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.31  E-value=0.00012  Score=51.66  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.30  E-value=0.00019  Score=49.40  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...|+|.|.+||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            367999999999999999998774

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.30  E-value=0.00014  Score=53.61  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      =.++|+|++|||||||++.|.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            36899999999999999998763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.30  E-value=0.00014  Score=49.43  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+|.|.+||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.30  E-value=0.00012  Score=52.74  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.30  E-value=0.00013  Score=51.96  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.29  E-value=0.00019  Score=48.81  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999998765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.29  E-value=0.00016  Score=49.14  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+|.|++||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.29  E-value=0.00021  Score=49.48  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.29  E-value=0.00013  Score=52.40  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.28  E-value=0.00019  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.|+++|++||||||+++.|...
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988763

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.28  E-value=0.00014  Score=52.01  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.28  E-value=0.00017  Score=48.93  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.28  E-value=0.00018  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.27  E-value=0.00014  Score=52.06  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.27  E-value=0.00015  Score=52.17  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57999999999999999998743

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.26  E-value=0.00013  Score=49.29  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.25  E-value=0.00022  Score=52.76  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            45578999999999999999998873

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.25  E-value=0.0002  Score=49.50  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.25  E-value=0.00016  Score=52.29  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.25  E-value=0.00015  Score=52.54  Aligned_cols=23  Identities=13%  Similarity=0.211  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998743

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.25  E-value=0.00019  Score=47.80  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.25  E-value=0.00019  Score=50.21  Aligned_cols=23  Identities=13%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.25  E-value=0.00023  Score=52.01  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....-|+++|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.25  E-value=0.00016  Score=48.59  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.24  E-value=0.00026  Score=48.10  Aligned_cols=28  Identities=21%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             CCCCCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          1 MADCNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      |+.. ....|++.|.+||||||+.+.|..
T Consensus         1 m~~~-~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKS-KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCC-CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCC-cCcEEEEECCCCCCHHHHHHHHHH
Confidence            4443 235799999999999999998865

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.24  E-value=0.0001  Score=52.02  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCchHHHHHHHh-hC
Q psy12922          9 KILVLGDSNVGKTCIVHRFC-DE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~-~~   30 (184)
                      -++|+|++||||||+++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 53

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.24  E-value=0.00017  Score=52.45  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998743

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.23  E-value=0.00034  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998743

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.22  E-value=0.00016  Score=51.81  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.22  E-value=0.00026  Score=51.81  Aligned_cols=26  Identities=15%  Similarity=0.179  Sum_probs=22.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ......|+|+|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999998765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.22  E-value=0.00019  Score=48.47  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..++|+|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45899999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.22  E-value=0.00017  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.22  E-value=0.0002  Score=52.70  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY   32 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~   32 (184)
                      .++++|++|||||||+|.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.21  E-value=0.00026  Score=52.55  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....+-|+|+|++|||||||++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.21  E-value=0.00024  Score=50.59  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.21  E-value=0.00019  Score=50.27  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.20  E-value=0.00023  Score=48.54  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.19  E-value=0.0003  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.19  E-value=0.0002  Score=50.17  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++|+|++|||||||++.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.18  E-value=0.00026  Score=48.55  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +...|+|.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.18  E-value=0.00022  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.17  E-value=0.00027  Score=47.71  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35699999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.17  E-value=0.00021  Score=51.12  Aligned_cols=25  Identities=36%  Similarity=0.333  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999999865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.16  E-value=0.00025  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.16  E-value=0.00035  Score=47.43  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ....|+++|.+||||||+++.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467999999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.15  E-value=0.0002  Score=54.04  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998743

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00012  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+|+|++|||||||++.|...
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.15  E-value=0.00028  Score=48.84  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.14  E-value=0.00028  Score=48.00  Aligned_cols=21  Identities=24%  Similarity=0.291  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.14  E-value=0.00016  Score=53.32  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++|+|++|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999998874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.14  E-value=0.00021  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999988743

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.13  E-value=0.00024  Score=53.47  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.13  E-value=0.00034  Score=51.63  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....|+|+|++|||||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999877

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.13  E-value=0.00037  Score=48.57  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.11  E-value=0.00038  Score=47.97  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....|+|+|++||||||+++.|..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.11  E-value=0.00026  Score=53.32  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+|+|++||||||+++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.11  E-value=0.0003  Score=48.12  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.11  E-value=0.00027  Score=53.31  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46899999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.10  E-value=0.0003  Score=49.08  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.10  E-value=0.00028  Score=50.53  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.09  E-value=0.00035  Score=49.32  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.09  E-value=0.00029  Score=51.13  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.09  E-value=0.00029  Score=51.55  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999998743

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.09  E-value=0.00031  Score=47.51  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.08  E-value=0.00032  Score=46.89  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.08  E-value=0.0003  Score=52.93  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.07  E-value=0.00037  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.07  E-value=0.00025  Score=47.83  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=16.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.07  E-value=0.00031  Score=52.91  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46899999999999999998743

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.06  E-value=0.0004  Score=49.65  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.06  E-value=0.00038  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~   28 (184)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.05  E-value=0.00032  Score=53.20  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.05  E-value=0.00039  Score=46.32  Aligned_cols=22  Identities=14%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.00033  Score=52.81  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999998744

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.03  E-value=0.00036  Score=49.80  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.02  E-value=0.00036  Score=52.87  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.02  E-value=0.00051  Score=47.13  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..+.|+++|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.02  E-value=0.00033  Score=52.84  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -.++|+|++|||||||++.+.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999998743

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.02  E-value=0.00014  Score=50.35  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.02  E-value=0.00048  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+++.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.02  E-value=0.00036  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998743

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.00  E-value=0.00065  Score=47.52  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.99  E-value=0.0004  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-.|+++|++||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.99  E-value=0.00038  Score=52.76  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      =.|+|+|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999998873

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.95  E-value=0.00051  Score=46.11  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..++|+|++|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999876

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.95  E-value=0.0005  Score=48.65  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.95  E-value=0.0003  Score=52.81  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.94  E-value=0.00055  Score=46.11  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988763

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.94  E-value=0.00046  Score=50.78  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .--++++|+.||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.93  E-value=0.00046  Score=53.08  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -|+|+|++||||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998874

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.92  E-value=0.00048  Score=52.50  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999999873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.92  E-value=0.0006  Score=49.61  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.92  E-value=0.00049  Score=49.22  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.92  E-value=0.00052  Score=46.33  Aligned_cols=21  Identities=19%  Similarity=0.183  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.+|+|+.|||||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.90  E-value=0.00059  Score=48.06  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...-|+|.|+.||||||+++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4467899999999999999998764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.90  E-value=0.00053  Score=49.66  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999999874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.90  E-value=0.0005  Score=54.26  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ..++|+|++||||||+++.+.+.-
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998743

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.90  E-value=0.00053  Score=51.12  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.00049  Score=53.60  Aligned_cols=23  Identities=26%  Similarity=0.651  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            46899999999999999998874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.87  E-value=0.001  Score=46.95  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467999999999999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.85  E-value=0.00029  Score=52.96  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.85  E-value=0.00065  Score=47.48  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++++|++|||||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.85  E-value=0.00086  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|+++|.+||||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.84  E-value=0.00053  Score=50.80  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++|+|+.|||||||++.+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4689999999999999999964

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.81  E-value=0.0007  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.|++.|++|+|||++++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.81  E-value=0.00069  Score=49.55  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.77  E-value=0.0021  Score=41.66  Aligned_cols=24  Identities=13%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            356999999999999999987653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.75  E-value=0.00079  Score=50.72  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-.|+++|+.||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.75  E-value=0.0008  Score=49.17  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++|+|++|+|||||++.+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988763

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.73  E-value=0.00086  Score=44.00  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|+|+.||||||+++++..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.72  E-value=0.001  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.+++.|++|+|||++++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.72  E-value=0.0011  Score=46.82  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.72  E-value=0.0012  Score=48.59  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....-|+|+|++|||||+|...|..
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHH
Confidence            33445688999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.72  E-value=0.0007  Score=45.43  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.72  E-value=0.001  Score=46.84  Aligned_cols=24  Identities=17%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..++.+|+|+|||||||+.+.|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            458999999999999999998865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.71  E-value=0.00087  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .--|+|+|++|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.70  E-value=0.0011  Score=45.48  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988763

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.70  E-value=0.00097  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      =+++++|++|||||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998854

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.68  E-value=0.0026  Score=49.27  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=19.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~   28 (184)
                      .-.-|.|+|+.++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            34556799999999999999665

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.68  E-value=0.0014  Score=47.97  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....+++.|+||+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3345799999999999999987665

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.67  E-value=0.0011  Score=46.00  Aligned_cols=21  Identities=24%  Similarity=0.128  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++++|++|||||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.67  E-value=0.001  Score=50.50  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.67  E-value=0.0012  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.66  E-value=0.0013  Score=42.86  Aligned_cols=26  Identities=8%  Similarity=0.123  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34579999999999999999987643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.65  E-value=0.0011  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++|+|++|||||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998873

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.64  E-value=0.0011  Score=52.66  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.61  E-value=0.0014  Score=45.06  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.60  E-value=0.0012  Score=51.72  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.58  E-value=0.0018  Score=47.41  Aligned_cols=25  Identities=12%  Similarity=0.135  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999998763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.58  E-value=0.0012  Score=53.06  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999988743

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.58  E-value=0.0012  Score=50.81  Aligned_cols=24  Identities=13%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..-|+++|.+||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999998763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.57  E-value=0.0011  Score=52.60  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|+.|||||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999998743

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.57  E-value=0.00085  Score=49.08  Aligned_cols=24  Identities=29%  Similarity=0.409  Sum_probs=17.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +..-|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.55  E-value=0.0019  Score=48.46  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+..+|+++|++|+||||+.+.|..
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999987764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.55  E-value=0.0014  Score=50.80  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      =+++|+|++|||||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            368999999999999999998854

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.55  E-value=0.0013  Score=49.67  Aligned_cols=19  Identities=21%  Similarity=0.427  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchHHHHHHHh
Q psy12922         10 ILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~   28 (184)
                      .+|+|+.|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4699999999999999987

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.55  E-value=0.0013  Score=47.88  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.53  E-value=0.0016  Score=44.78  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..|+|+|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.53  E-value=0.0016  Score=47.19  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.+++.|++|+|||++++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999999764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.52  E-value=0.0014  Score=52.65  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.52  E-value=0.0012  Score=45.75  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.+++.|+||+|||+++.++..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999988866

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.51  E-value=0.0015  Score=47.96  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.|++.|++|+|||++++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0014  Score=52.75  Aligned_cols=23  Identities=13%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999998743

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.48  E-value=0.0016  Score=46.41  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.|++.|++|+|||++++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998763

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.48  E-value=0.0013  Score=52.89  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999988743

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.46  E-value=0.0017  Score=45.27  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.45  E-value=0.0018  Score=44.59  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.42  E-value=0.0025  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.42  E-value=0.0018  Score=46.90  Aligned_cols=21  Identities=10%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++|+|++|||||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.41  E-value=0.0031  Score=45.38  Aligned_cols=26  Identities=23%  Similarity=0.463  Sum_probs=22.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .....+++.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999998774

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.41  E-value=0.0018  Score=52.23  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998743

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.38  E-value=0.0014  Score=47.02  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ....|+|.|.+||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4478999999999999999988764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.37  E-value=0.0011  Score=53.07  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|++|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999988774

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.36  E-value=0.002  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.35  E-value=0.0021  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.34  E-value=0.0025  Score=50.63  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|+.|||||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998844

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.32  E-value=0.0031  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|+.|||||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.32  E-value=0.0024  Score=47.68  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998877

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.31  E-value=0.0023  Score=44.45  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.31  E-value=0.0015  Score=52.41  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.28  E-value=0.0026  Score=43.08  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++|+|.++||||++..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.27  E-value=0.0033  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|+.|||||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998844

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.27  E-value=0.0024  Score=46.78  Aligned_cols=85  Identities=13%  Similarity=0.049  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCccccccc-h---Hhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922         56 TKLQIWDTAGQERFRTL-T---TAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS  129 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (184)
                      +.+.++||+|....... .   ...+.  ..+..++|+|.+..  ...+..+...+.           .-...-+|+||.
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~-----------~l~~~giVltk~  249 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS-----------SVPVNQYIFTKI  249 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS-----------SSCCCEEEEECT
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh-----------cCCCCEEEEeCC
Confidence            45899999996543221 1   12222  35778899987643  233333222211           111235677999


Q ss_pred             CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        130 DVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      |.....    -.........++|+..++
T Consensus       250 D~~~~~----g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          250 DETTSL----GSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             TTCSCC----HHHHHHHHTCSCCCSEEC
T ss_pred             Ccccch----hHHHHHHHHHCcCEEEEE
Confidence            976421    244556667787765544

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.26  E-value=0.0033  Score=43.79  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...-|+|.|.+||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            456789999999999999999865

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.26  E-value=0.0025  Score=46.49  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...+++.|+||+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0025  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      --|++.|+||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998863

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.24  E-value=0.0025  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -+.|+|++|||||||++.+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998874

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.24  E-value=0.06  Score=39.54  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999998764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.23  E-value=0.0032  Score=44.51  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..|++.|.+||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998764

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0051  Score=43.16  Aligned_cols=79  Identities=14%  Similarity=0.085  Sum_probs=40.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEE-eC-CCccccc----c-chHhhhcCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW-DT-AGQERFR----T-LTTAYYRGA   80 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~-~G~~~~~----~-~~~~~~~~~   80 (184)
                      +=|++-|.++.||++|++++.+..-..      ........+.......++.|| |. +-.+.+.    . -......-.
T Consensus        30 ilvl~~~~~~~~~~~~~~~lf~~~~~~------~~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~vi  103 (233)
T 3uc9_A           30 ILVLSDHPHNFLKTQFLQDLFHCSSTG------ISIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNVM  103 (233)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHCCCCCS------SCEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHTE
T ss_pred             eEEEecCcccccHHHHHHHHhcccccc------cccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHhc
Confidence            334444999999999999998863211      112223333344444455554 43 3222111    1 011122334


Q ss_pred             cEEEEEEeCCCh
Q psy12922         81 MGILLMYDVTNL   92 (184)
Q Consensus        81 d~~i~v~d~~~~   92 (184)
                      .++|+|++...+
T Consensus       104 ggII~~f~~p~~  115 (233)
T 3uc9_A          104 AGIILITDIRQT  115 (233)
T ss_dssp             EEEEEEECHHHH
T ss_pred             ceEEEEEeCCCc
Confidence            789999975433

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.22  E-value=0.0027  Score=44.76  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.22  E-value=0.0032  Score=42.35  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-|++.|++|+||||+...|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45899999999999999988874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0027  Score=49.03  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.|++.|+||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.21  E-value=0.0027  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.|++.|+||+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999998874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.21  E-value=0.003  Score=46.77  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...|++.|+||+|||++++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999998764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.21  E-value=0.003  Score=43.62  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|+|+.||||||+++++..
T Consensus        26 ~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.20  E-value=0.0028  Score=47.26  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998774

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.20  E-value=0.0029  Score=46.63  Aligned_cols=85  Identities=20%  Similarity=0.108  Sum_probs=46.6

Q ss_pred             EEEEEeCCCccccccch-------Hhh-----hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922         57 KLQIWDTAGQERFRTLT-------TAY-----YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL  124 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  124 (184)
                      .+.++|+||........       ...     ....+.+++|+|...+  .+.+.. ...+...          -...-+
T Consensus       188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~----------~~i~gv  254 (306)
T 1vma_A          188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA----------VNVTGI  254 (306)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH----------SCCCEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc----------CCCCEE
Confidence            48899999953211110       111     1247888999998743  222221 2223221          122357


Q ss_pred             EEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922        125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus       125 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      |+||.|.....    -.+..+....+.|+..++.
T Consensus       255 VlTk~D~~~~g----G~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          255 ILTKLDGTAKG----GITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             EEECGGGCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred             EEeCCCCccch----HHHHHHHHHHCCCEEEEeC
Confidence            78999964321    1256667777888777654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.19  E-value=0.0027  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0037  Score=50.36  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETY   32 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~   32 (184)
                      ++++|+.|||||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999988543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.16  E-value=0.0021  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +.-.|+++|++|||||||++.|...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467899999999999999998774

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.003  Score=48.77  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.12  E-value=0.0034  Score=47.27  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++|.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.12  E-value=0.0045  Score=46.10  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.11  E-value=0.002  Score=56.44  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +|+|+|++|||||||++.|.+-
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999998863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.09  E-value=0.0038  Score=52.82  Aligned_cols=24  Identities=13%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY   32 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~   32 (184)
                      .++++|+.|||||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999986543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.09  E-value=0.0037  Score=46.13  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-|+|+|++|||||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.08  E-value=0.0015  Score=46.92  Aligned_cols=22  Identities=27%  Similarity=0.521  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0035  Score=47.84  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      --|++.|+||+|||+|++++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            46899999999999999999774

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.02  E-value=0.0036  Score=49.85  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.++++|+||+|||||++.+...
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998763

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.02  E-value=0.0052  Score=46.97  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~   28 (184)
                      ..++|++++|...|||||+++.+.
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHHH
Confidence            567999999999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.01  E-value=0.0039  Score=46.41  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.01  E-value=0.0033  Score=44.29  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=17.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..-|+|.|.+||||||+++.|..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.00  E-value=0.0045  Score=45.60  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-.+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.99  E-value=0.0046  Score=45.85  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...|++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999998664

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.96  E-value=0.004  Score=48.97  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.96  E-value=0.0045  Score=46.46  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.+++.|+||+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998763

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.94  E-value=0.0041  Score=46.79  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...|++.|+||+|||++++.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-51
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-47
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-45
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-44
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-44
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-43
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-42
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-41
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-41
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-40
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-39
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-38
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-36
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-36
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-36
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-36
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-33
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-32
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-31
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-31
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-31
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	9e-31
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-30
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-29
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-28
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-28
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-27
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-26
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	8e-26
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-25
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	9e-25
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-24
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-23
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-23
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-22
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-20
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-19
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-15
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	9e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-07
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	5e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	8e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	4e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.001
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  160 bits (405), Expect = 3e-51
 Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++GDS VGKTC++ RF ++ +  T+ISTIGIDFK + I+LD    KLQIWDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+TN +SF ++  W++NIEE           DV K++ GN
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-------DVEKMILGN 119

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K DV  +R V  +  + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (382), Expect = 1e-47
 Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            KIL++GDS VGK+C++ RF ++ +  ++I+TIGIDFK K +D++    KLQIWDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+TTAYYRGAMGI+L+YD+T+  +F ++  W          +    + D  ++L   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQW--------FKTVNEHANDEAQLLLVG 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
                  R V     + LA    +PF E S K + N++E F TLA+LI+E+
Sbjct: 115 NKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (365), Expect = 3e-45
 Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 7/178 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D +  +KI+++G++ VGKTC+V RF    +     +TIG+DF  K ++++    KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFR++T +YYR A  ++L YD+T  ESF+ L  WL+ I        Q AS  V+ 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-------EQYASNKVIT 113

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
           VL GNK D+  +R V  + A+  ++   + + E S K++ N+++ FL LA  +  + R
Sbjct: 114 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 5e-44
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 8/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           +K++++GDS VGKTC++ RF D  +   T+IST+GIDF+ K++D+D V  KLQ+WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERFR++T AYYR A  +LL+YDVTN  SF ++  W           ++ A  DV  +L G
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW-------LTEIHEYAQHDVALMLLG 119

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           NK D   +R V+ +D + LA  Y LPF E S K  +N+D AF  +A+ ++
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  142 bits (358), Expect = 8e-44
 Identities = 84/177 (47%), Positives = 122/177 (68%), Gaps = 7/177 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD    KLQIWDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFRT+T++YYRG+ GI+++YDVT+ ESF  +  WL+ I+             V+K+L GN
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-------STVLKLLVGN 119

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
           K D+K +R V+   A+  AD   +PF E S   + N+++AFLT+AR I+E    Q +
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 176

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 2e-43
 Identities = 68/180 (37%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           D   T KIL++G+S VGK+ ++ RF D+T+     +TIG+DFK K I +D    KL IWD
Sbjct: 3   DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 62

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQERFRTLT +YYRGA G++L+YDVT  ++F  L+ WL              + + + 
Sbjct: 63  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWL-------NELETYCTRNDIV 115

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
            +       K  R V   +    A  +S+ F E S K    +  AF  L   I +   L 
Sbjct: 116 NMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 6e-42
 Identities = 66/168 (39%), Positives = 105/168 (62%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD  VGK+C++H+F ++ +      TIG++F  +II++     KLQIWDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR +T +YYRGA G L++YD+T   ++ HL+ WL +   +   +        V +L GN
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-------VIILIGN 117

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K+D++ QR V  ++A+  A+   L F E S K   N+++AFL  A+ I
Sbjct: 118 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  136 bits (342), Expect = 1e-41
 Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 7/176 (3%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
           + +  +KIL++G+S+VGKT  + R+ D+++   ++ST+GIDFK K I  +D   KLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 63  TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
           TAGQER+RT+TTAYYRGAMG +LMYD+TN ESF  +  W   I          +  +   
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-------KTYSWDNAQV 113

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +L GNK D++ +R V ++  + LAD+    F+E S K NIN+ + F  L  +I E+
Sbjct: 114 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-41
 Identities = 66/171 (38%), Positives = 106/171 (61%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GDS VGK+ ++ RF    +     STIG++F  + I +D    K QIWDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+R +T+AYYRGA+G LL+YD+    +++++  WLK + +       +A  ++V +L GN
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 117

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD++  RAV T +A+  A+  +L F E S   + N++EAF  +   I   
Sbjct: 118 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 6e-41
 Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 16/186 (8%)

Query: 3   DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII----------DLD 52
           D +   K+L LGDS VGKT  ++R+ D  +   +I+T+GIDF++K +             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 53  DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS 112
                LQ+WDTAGQERFR+LTTA++R AMG LLM+D+T+ +SF ++  W      +    
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW------MSQLQ 114

Query: 113 NQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
                 +   VL GNK+D+  QR V  + A+ LAD Y +P++E S     N+++A  TL 
Sbjct: 115 ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 174

Query: 173 RLIREQ 178
            LI ++
Sbjct: 175 DLIMKR 180

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 5e-40
 Identities = 60/168 (35%), Positives = 101/168 (60%), Gaps = 7/168 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++ LG+ +VGKT ++ RF  +++ +TY +TIGIDF  K + L+D   +LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L  +Y R +   +++YD+TN+ SFQ    W+ ++             DV+ +L GN
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR-------TERGSDVIIMLVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K+D+  +R V  ++ +  A   ++ F E S K   N+ + F  +A  +
Sbjct: 114 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K LV+G++  GK+C++H+F ++ + D    TIG++F  KII++     KLQIWDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR++T +YYRGA G LL+YD+T+ E++  L  W         ++   AS ++V +L GN
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNW-------LTDARMLASQNIVIILCGN 118

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D+   R V   +A   A    L F E S     N++EAF+  AR I  +
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 3e-38
 Identities = 68/171 (39%), Positives = 114/171 (66%), Gaps = 7/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K +++GD+ VGK+C++ +F D+ +   +  TIG++F  +++++D    KLQIWDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            FR++T +YYRGA G LL+YD+T  E+F HL  WL++         Q++S ++V +L GN
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-------QHSSSNMVIMLIGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD++++R V+ ++ +  A  + L F E S K   N++EAF+  A+ I  +
Sbjct: 117 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 1e-36
 Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 7/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+  VGKT +V R+C+  + D +I+T+G  F  K +++      L IWDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RF  L   YYR + G +L+YD+T+ +SFQ +  W+           +    ++   + GN
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWV-------KELRKMLGNEICLCIVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K D++ +R V  ++A+  A++     Y  S KQN  I+E FL L + + E
Sbjct: 117 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 1e-36
 Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 3/168 (1%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LGD  VGK+ +++R+    +      TIG++F  K +++D     +QIWDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RFR+L T +YRG+   LL + V + +SFQ+L+ W K        ++         V+ GN
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY---ADVKEPESFPFVILGN 123

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           K D+  ++    +      DN   P++E S K   N+  AF    R +
Sbjct: 124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 1e-36
 Identities = 68/170 (40%), Positives = 107/170 (62%), Gaps = 7/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K+++LG+S VGK+ +V RF    +++   STIG  F  + + LDD   K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           R+ +L   YYRGA   +++YD+TN ESF     W+           + ASP++V  L+GN
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-------KELQRQASPNIVIALSGN 119

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K+D+  +RAV  ++AQ  AD+ SL F E S K ++N++E F+ +A+ + +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 6e-36
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 7/170 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + YK++VLG   VGK+ +  +F   T+ + Y  TI  DF +K I++D  P+ L+I DTAG
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAG 60

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
            E+F ++   Y +   G +L+Y + N +SFQ +      I              V  +L 
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII------RVKRYEKVPVILV 114

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           GNK D++++R V + + + LA+ +  PF E S K    +DE F  + R +
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  118 bits (297), Expect = 5e-35
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 7/172 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
            +K++++G   VGK+ +  +F  + + + Y  T   D  +K + LD    ++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E +  +   Y+R   G L ++ +T +ESF     + + I  V          +V  +L G
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLVG 116

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           NKSD++ +R V  ++A+  AD +++ + E S K   N+D+ F  L R IR +
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 3e-34
 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 8/170 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK++V+G   VGK+ +  +     + D Y  TI  D  +K + +D     L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  +   Y R   G L ++ + N +SF+ ++ + + I+ V        S DV  VL GN
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           K D+  +  V+++ AQ LA +Y +P+ E S K    +++AF TL R IR+
Sbjct: 117 KCDLAART-VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 4e-33
 Identities = 59/173 (34%), Positives = 95/173 (54%), Gaps = 10/173 (5%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           + K+++LG++ VGK+ IV RF    + +    TIG  F  + + +++   K +IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF +L   YYR A   L++YDVT  +SF    +W+          ++ AS D++  L G
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWV-------KELHEQASKDIIIALVG 115

Query: 127 NKSDV---KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
           NK D+     +R V  ++ + LA+   L F+E S K   N+++ FL +   I 
Sbjct: 116 NKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 7e-33
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 7/174 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           ++T+K++V+G   VGK+ +  +F    +   Y      D   KI  +D +P +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE F  +   Y R   G LL++ + + +SF  +      I  V          D   VL
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVL 116

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
            GNK+D+++QR V   +A     ++ + ++E S K  +N+DEAF  L R +R+ 
Sbjct: 117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 1e-32
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + Y+++V+G   VGK+ +  +F    +   Y  TI  D   K   +DD   +L I DTAG
Sbjct: 4   EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAG 62

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE F  +   Y R   G LL++ VT+  SF+ +  + + I  V          +   +L 
Sbjct: 63  QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR------DEFPMILI 116

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           GNK+D+  QR V  ++ Q LA    + + E S K  +N+D+AF  L R+IR+ 
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-32
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           + YK++VLG   VGK+ +  +F    + + Y  TI  D  +K +++D     L+I DTAG
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAG 60

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
            E+F  +   Y +   G  L+Y +T   +F  L    + I  V          DV  +L 
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT------EDVPMILV 114

Query: 126 GNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIR 176
           GNK D++ +R V  +  Q LA  + +  F E S K  IN++E F  L R I 
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 8e-32
 Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 10/169 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +KI+V+GDSNVGKTC+ +RFC   + D   +TIG+DF+++ +D+D    K+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 68  RFRTL-TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           RFR      YYR    ++ +YD+TN+ SF  L  W++  ++         + D+ ++L G
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ------HLLANDIPRILVG 116

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK---QNINIDEAFLTLA 172
           NK D+++   V T  AQ  AD +S+P +E S K    N +++  F+TLA
Sbjct: 117 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 2e-31
 Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 7/170 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  K+ +LGD+ VGK+ I+ RF ++++      TIG  F  K +   +   K  IWDTAG
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
            ERFR L   YYRG+   +++YD+T  E+F  L  W+           Q+  P +V  +A
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-------RELRQHGPPSIVVAIA 115

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           GNK D+   R V  +DA+  AD+    F E S K  INI+E F+ ++R I
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 8/173 (4%)

Query: 7   TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           TYK++V+GD  VGK+ +  +F  + +   Y  TI  D   K  ++D+    L + DTAGQ
Sbjct: 4   TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           E F  +   Y R   G L++Y VT+  SF+H++ + + I  V    +         +L  
Sbjct: 63  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF------PMILVA 116

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
           NK D+   R V     + +A  Y++P+ E S K   +N+D+ F  L R+IR+Q
Sbjct: 117 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 5e-31
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           QT K +V+GD  VGKTC++  +    +   Y+ T+  D     + +   P  L ++DTAG
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAG 60

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    Y      L+ + V +  SF+++           C       P    +L 
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-------PKTPFLLV 113

Query: 126 GNKSDVKTQRAV------------QTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLA 172
           G + D++   +               + A+ LA +  ++ + E S      +   F    
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

Query: 173 RLIREQTR 180
               E   
Sbjct: 174 LAALEPPE 181

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (270), Expect = 9e-31
 Identities = 59/171 (34%), Positives = 102/171 (59%), Gaps = 3/171 (1%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+++LGDS VGKT +++++ ++ + + Y +TIG DF  K + +DD    +QIWDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           RF++L  A+YRGA   +L++DVT   +F+ L+ W           +     +   V+ GN
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP---ENFPFVVLGN 119

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           K D++ ++    +         ++P++E S K+ IN+++AF T+AR   +Q
Sbjct: 120 KIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 9e-31
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           Y++ V G   VGK+ +V RF   T+ ++YI T+   ++Q I     +   LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSIC-TLQITDTTGSH 61

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  +           +L+Y +T+ +S + L    + I E      +     +  +L GN
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE-----IKGDVESIPIMLVGN 116

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
           K D    R VQ+ +A+ LA  +   F E S K N N+ E F  L  L + +T
Sbjct: 117 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 9e-31
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 21/183 (11%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           Q  K +V+GD  VGKTC++  +    +   YI T+  D     + +D  P  L +WDTAG
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 62

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           QE +  L    Y      L+ + + +  SF+++               ++  P+   +L 
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-------RHHCPNTPIILV 115

Query: 126 GNKSDVKTQRAVQTK------------DAQMLADNY-SLPFYEVSCKQNINIDEAFLTLA 172
           G K D++  +    K                +A    ++ + E S      +   F    
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

Query: 173 RLI 175
           R +
Sbjct: 176 RAV 178

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (266), Expect = 2e-30
 Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 6/174 (3%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-KLQIWDTAGQ 66
            K+++LGDS VGKT ++HR+ ++ Y   Y +TIG DF  K + +D      +Q+WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
           ERF++L  A+YRGA   +L+YDVTN  SF+++  W         ++N N+      V+ G
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL---VHANVNSPETFPFVILG 119

Query: 127 NKSDVKTQRAVQTK--DAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           NK D +  + + ++    ++      +P +  S K  IN+D AF  +AR   +Q
Sbjct: 120 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  103 bits (256), Expect = 9e-29
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 8/174 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I++R        T   TIG + +           KL +WD  
Sbjct: 15  NKELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVETLSYK----NLKLNVWDLG 69

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ   R     YY     ++ + D T+ +     +  L  + +     +      +V   
Sbjct: 70  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAAL---LVFAN 126

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
             ++    +   V  +   +   + S      S  +   I E    L  +I+E+
Sbjct: 127 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 8/169 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K++V+G+  VGK+ ++ R+C   +   Y  TIG+DF ++ I ++D   +L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           F  +T AYYRGA   +L++  T+ ESF+ ++ W                 D+   L  NK
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW--------REKVVAEVGDIPTALVQNK 115

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
            D+     ++ ++A+ LA    L FY  S K+++N+ E F  LA    +
Sbjct: 116 IDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 14/175 (8%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           N+  +IL+LG    GKT I+++        T  +   + F  + +   +V  K  +WD  
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT---VGFNVETVTYKNV--KFNVWDVG 64

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ++ R L   YY G  G++ + D  + +        L  I       N     D + ++
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII------NDREMRDAIILI 118

Query: 125 AGNKSDVKTQR---AVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             NK D+        +Q K       + +             + E    L    +
Sbjct: 119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 5e-28
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 1   MAD--CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
           MA        K +V+GD  VGKTC++  + ++ + + Y+ T+  D     + +      L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 59  QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP 118
            ++DTAGQE +  L    Y      L+ + V N  SFQ++               +  +P
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE-------LKEYAP 112

Query: 119 DVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNY-SLPFYEVSCKQNINID 165
           +V  +L G + D++                +  +  Q LA    +  + E S      + 
Sbjct: 113 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 172

Query: 166 EAFLTLARLI 175
             F      I
Sbjct: 173 TVFDEAIIAI 182

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 1e-27
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K++++GD   GKTC++     + + + Y+ T+  +     I++D    +L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
            +  L    Y          DV  +         L+NI E      ++  P+V  +L GN
Sbjct: 62  DYDRLRPLSYP-------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 114

Query: 128 KSDVKTQRAVQ------------TKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARL 174
           K D++     +             ++ + +A+   +  + E S K    + E F    R 
Sbjct: 115 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 174

Query: 175 IRE 177
             +
Sbjct: 175 ALQ 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 1e-27
 Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 8/167 (4%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           +IL++G    GKT I+++            T        +  ++       +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
            R L   Y++   G++ + D  + E        L  +       +        K    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK---QDL 113

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
            +      +  K       + +             + E    L+  +
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 2e-26
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+ + G + VGK+ +V RF  + +   Y  T+   ++ +    DD    ++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDTAGQE 61

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
                   + R   G +L+YD+T+  SF+ +                    +V  +L GN
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKN------ILDEIKKPKNVTLILVGN 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDEAFLTLARLIREQ 178
           K+D+   R V T++ + LA   +  FYE S      NI E F  L R +R +
Sbjct: 115 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 8e-26
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           +K++++GD   GKT  V R     +   Y++T+G++    +   +  P K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
           +F  L   YY  A   ++M+DVT+  +++++  W +++  V  N        +  VL GN
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 115

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
           K D+K ++            N  L +Y++S K N N ++ FL LAR +     L+
Sbjct: 116 KVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 7e-25
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +++ KI +LG  +VGK+ +  +F +  + D+Y  TI  +   K+I ++     LQ+ DTA
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTA 60

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ+ +      Y     G +L+Y VT+++SF+ +      + ++              +L
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP------IML 114

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
            GNK D+  +R +  ++ + LA++++  F E S K+N    + F  +     
Sbjct: 115 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.2 bits (230), Expect = 7e-25
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 22/181 (12%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           KI+V+GDS  GKT ++H F  + + + Y+ T+  +      ++D    +L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
           +  +    Y  +  +L+ +D++  E+   +    K          Q   P+   +L G K
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-------IQEFCPNTKMLLVGCK 115

Query: 129 SDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNIN-IDEAFLTLARL 174
           SD++T            Q  V       +A    +  + E S  Q+ N + + F      
Sbjct: 116 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 175

Query: 175 I 175
            
Sbjct: 176 C 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (228), Expect = 9e-25
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
           YK+L+LG   VGK+ +   F      D   +        + I +D     L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGV--EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             R L           +++Y VT+  SF+  +                 + DV  +L GN
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL------RVQLRRARQTDDVPIILVGN 113

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           KSD+   R V   + +  A  +   F E S   + N+   F  + R IR +
Sbjct: 114 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q +K++++G  N GKT I+++F       T  +      +  I +     T+  +WD  
Sbjct: 13  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-----TRFLMWDIG 67

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQE  R+    YY     ++++ D T+ E        L  +                K  
Sbjct: 68  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ- 126

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
             +  +  T   +          ++              + +    +   ++
Sbjct: 127 --DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 91.7 bits (226), Expect = 2e-24
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            ++L+LG  N GKT I+ +F  E      + TI       I  L+    KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
             R+    Y+    G++ + D  + +  Q     L+++      +       ++     +
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 114

Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
                +  A+Q         ++       S     ++      L   I  +
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (221), Expect = 1e-23
 Identities = 33/180 (18%), Positives = 72/180 (40%), Gaps = 10/180 (5%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
              ++ VLGD+  GK+ ++HRF   + Y     T    + +K + +D     + I + AG
Sbjct: 4   PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQY-KKEMLVDGQTHLVLIREEAG 61

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
               +     +   A  ++ ++ + +  SFQ ++     +  +        +  +  V  
Sbjct: 62  APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL--VGT 114

Query: 126 GNKSDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
            ++    + R V    A+ L  D     +YE      +N+D  F  +A+ +    + Q +
Sbjct: 115 QDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 89.2 bits (220), Expect = 2e-23
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 14/174 (8%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
           +Q  +IL+LG  N GKT ++ +   E        T G + K           KL +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQ----GFKLNVWDIG 68

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           GQ + R    +Y+     ++ + D  + + F+           +     +     V  ++
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQE------LTELLEEEKLSCVPVLI 122

Query: 125 AGNKSDVKTQR---AVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
             NK D+ T      +          +        S      + +    + + +
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 1e-22
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
           N  Y+++++G+  VGK+ + + F       D+    +G D  ++ + +D     + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 64  A-GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
              +     L     +     L++Y +T+  SF+  +     +             D+  
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT------EDIPI 114

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
           +L GNKSD+   R V   + +  A  +   F E S     N+ E F  + R +R +
Sbjct: 115 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.2 bits (204), Expect = 3e-21
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 9/169 (5%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+L LG  N GKT ++H   ++      ++T+   +     +L     K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN---ASPDVVKVLA 125
            R L   Y+    GI+ + D  + E F      L  +  +    +         +    A
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 126 GNKSDVKTQ-RAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
            +++++++    + T  +Q +     +  +  S        EAF  L++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 81.7 bits (200), Expect = 1e-20
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 6   QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
           +  ++ ++G    GKT  V+      + +  I T+G + ++    +      +++WD  G
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGG 56

Query: 66  QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
           Q RFR++   Y RG   I+ M D  + E  +     L N+ +          P +V    
Sbjct: 57  QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI---PVLVLGNK 113

Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
            +      ++ +  K       +  +  Y +SCK+  NID     L +  +
Sbjct: 114 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (201), Expect = 4e-20
 Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 13/179 (7%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
             T+++L+LG    GK+ IV +          + T GI   +    +D V     ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSGIFETK--FQVDKV--NFHMFDVG 55

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS----NQNASPDV 120
           GQ   R      +     I+ +   ++       +     ++E         N      +
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 121 VKVLAGNKSDVKTQRAVQTKDA-QMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
             +L  NK D+  ++ +  K   +     ++              D         IR++
Sbjct: 116 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 79.8 bits (195), Expect = 9e-20
 Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 8/174 (4%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +  +IL+LG    GKT I++R            T        +  +     K Q+WD  
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLG 57

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           G    R     YY     ++ + D  +      +      +  +        +  VV   
Sbjct: 58  GLTSIRPYWRCYYSNTDAVIYVVDSCD---RDRIGISKSELVAMLEEEELRKAILVVFAN 114

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
             +     T   +          +     ++ S  +   +DEA   L   ++ +
Sbjct: 115 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (191), Expect = 7e-19
 Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 13/170 (7%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            KIL+LG    GK+  + +            T GI         +      ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS----NQNASPDVVKV 123
             R      +     IL +   +  +     +     + E         N     +V  +
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
           L  NK+D+  ++           +    P      ++   + E F    R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGKRR 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.9 bits (188), Expect = 2e-18
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 36/201 (17%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+L+LG    GK+  + +        + + T GI      +         ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQ----SVIFRMVDVGGQR 56

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS----NQNASPDVVKV 123
             R      +     I+ +  ++  +     +     +EE               +   +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 124 LAGNKSDVKTQRAVQTKDAQMLAD--------------------------NYSLPFYEVS 157
           L  NK D+  ++ + +       +                          +  +  +   
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 158 CKQNINIDEAFLTLARLIREQ 178
                NI   F  +   I + 
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 75.5 bits (184), Expect = 5e-18
 Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 26/186 (13%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
            +T K++ LG  N GKT ++H   D+                   +L         +D  
Sbjct: 11  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTIAGMTFTTFDLG 65

Query: 65  GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
           G  + R +   Y     GI+ + D  + E        L ++             +V  ++
Sbjct: 66  GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI------ANVPILI 119

Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYS---------------LPFYEVSCKQNINIDEAFL 169
            GNK D     + +           +               L  +  S  +     E F 
Sbjct: 120 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

Query: 170 TLARLI 175
            +A+ I
Sbjct: 180 WMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (172), Expect = 3e-16
 Identities = 28/201 (13%), Positives = 57/201 (28%), Gaps = 39/201 (19%)

Query: 8   YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
            K+L+LG    GK+ IV +        T I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 68  RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV----GCNSNQNASPDVVKV 123
             R      + G   I+    +++ +     +  +  + E         N     D   +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYS--------------------------LPFYEVS 157
           L  NK D+  ++  ++       +                             +  +   
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 158 CKQNINIDEAFLTLARLIREQ 178
                N+   F  +  +I + 
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.1 bits (165), Expect = 5e-15
 Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 4/158 (2%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
            +L +G  + GKT +  R     Y DT  ++I        ++ +   +   I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
              L   +   A  ++ + D    +              +   + +N+      ++A NK
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS---LLIACNK 117

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166
            D+   ++ +    Q+  +  +L     +    ++   
Sbjct: 118 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 155

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (111), Expect = 9e-08
 Identities = 20/158 (12%), Positives = 42/158 (26%), Gaps = 8/158 (5%)

Query: 9   KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
           K+++ G  N GK+ +++               G         +      L I DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 69  FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
                           +      L           +  E+           +   +  NK
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166
           +D+       T +   +++        +S +    +D 
Sbjct: 122 ADI-------TGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           I++ G  N GKT ++     ++       T+         D D     L  +    + R+
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 70  RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129
           +       R      L++ V +    + L    + + ++   +  +    +  ++A NKS
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 130 DVKTQRAVQTKDAQMLAD--------NYSLPFYEVSCKQNINIDEAFLTL 171
           ++ T R        + ++          SL   E    +    +     L
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-05
 Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 9/168 (5%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKL 58
           +   ++   G SN GK+  ++   ++               I +        L D+P   
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 59  QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP 118
                   +R        Y      L    V         +   + IE    ++      
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 119 DVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166
                   + +       V+        D   +     S  +   +D+
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGD---VQVETFSSLKKQGVDK 178

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 14/174 (8%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ- 66
           + ++G  N GK+ ++               +T+  +     +  ++   +  + D  G  
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE---RFTLADIPGII 60

Query: 67  ---ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
                 + L   + R      ++  V +              E    +      P +V +
Sbjct: 61  EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120

Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
              NK D+  + AV+     +  +        VS      +      L  L+R 
Sbjct: 121 ---NKVDLLEEEAVKALADALAREGL--AVLPVSALTGAGLPALKEALHALVRS 169

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 13/182 (7%)

Query: 10  ILVLGDSNVGKTCIVHRFCDE---------TYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
           I+  G SNVGK+ +++R   +                          +     +    + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 61  WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
                ++          +     +L+ D                I             D+
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 121 VKVLAGNKSD-VKTQRAVQTKDAQMLADNYSL---PFYEVSCKQNINIDEAFLTLARLIR 176
             ++A NK D +K  + V    A+      S     F  +S K   NI+     +  +IR
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182

Query: 177 EQ 178
           E+
Sbjct: 183 ER 184

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           I ++G  NVGK+ ++++   +    T         +   I  +     +   DT G    
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66

Query: 70  RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129
                           + DV  +        W  + E V     +  +P ++ V      
Sbjct: 67  EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN--KVD 124

Query: 130 DVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           +V+ +  +      + +    L    +S +  +N+D     + + + E
Sbjct: 125 NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 172

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 20/169 (11%), Positives = 45/169 (26%), Gaps = 2/169 (1%)

Query: 9   KILVLGDSNVGKTCIVHRFC--DETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
           +I + G SNVGK+  ++           +            II+ +     +  +  A  
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 67  ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
            +                       ++     +    +  ++         P +V     
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
           +K              Q L  +        S +     DEA+  + ++I
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 4/168 (2%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           + ++G  NVGK+ +++                   K+    L +   ++   DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 70  RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129
                 +    +   L      +      +      E V            + ++     
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 130 DVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
             K                       +S      + E    L  L+ E
Sbjct: 127 AAKYPEEAM---KAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 171

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 12/175 (6%)

Query: 10  ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
           + ++G  +VGK+ ++                 +     +++ DD      + D  G    
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEG 62

Query: 70  RTL-------TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
                        +      I+ + D++ LE     + +         +       +  +
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY--LTINQELSEYNLRLTERPQ 120

Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
           ++  NK D+           + L D+Y  P + +S      + E    +A  +  
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDY--PVFPISAVTREGLRELLFEVANQLEN 173

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 17/173 (9%)

Query: 5   NQTYKILVLGDSNVGKTCIVHRFCDET-----------YYDTYISTIGIDFKQKIIDLDD 53
               K+ ++G  NVGK+ + +   ++                         K   +D   
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65

Query: 54  VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN 113
           +  K ++     ++            A  ++++ D T   + Q              +  
Sbjct: 66  LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV 125

Query: 114 QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166
                D+V          K          + L      P    S  +  NID 
Sbjct: 126 VFNKWDLV------VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.81
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.78
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.74
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.62
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.6
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.57
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.54
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.53
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.45
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.27
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.22
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.59
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.58
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.52
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.47
d1okkd2	207	GTPase domain of the signal recognition particle r	98.43
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.42
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.39
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.27
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.16
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.0
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.95
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.87
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.83
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.83
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.82
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.81
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.78
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.77
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.77
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.71
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.64
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.62
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.62
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.61
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.61
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.57
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.55
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.54
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.53
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.52
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.51
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.49
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.49
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.46
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.46
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.44
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.44
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.43
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.43
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.42
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.42
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.42
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.41
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.41
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.4
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.4
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.39
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.38
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.37
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.35
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.33
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.32
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.31
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.3
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.29
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.28
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.25
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.25
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.25
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.23
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.23
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.22
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.19
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.17
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.15
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.14
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.14
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.13
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.04
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.99
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.95
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.94
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.92
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.9
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.84
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.79
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.78
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.77
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.74
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.73
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.69
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.67
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.65
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.64
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.61
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.59
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.54
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.52
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.5
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.48
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.39
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.36
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.32
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.31
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.29
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.24
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.24
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.19
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.15
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.13
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.05
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.01
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.01
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.99
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.99
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.98
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.96
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.92
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.87
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.84
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.73
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.61
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.56
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.52
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.51
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.44
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.31
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.31
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.25
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.13
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.05
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.03
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.02
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.95
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.78
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.76
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.28
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.13
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.79
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.28
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.66
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.52
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.28
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.95
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.39
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.26
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.22
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.19
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.79
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.7
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.58
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.02
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.98
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.74
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.62
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.54
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.74
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.35
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.96
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.95
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.89
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.46
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.43
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.64
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.8
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	83.23
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.74
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.6
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.74
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	81.0

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=215.33  Aligned_cols=171  Identities=33%  Similarity=0.564  Sum_probs=154.2

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ...+.+||+++|.+|||||||+++|....+...+.++.. +.....+.+++..+.+.+||++|.+++...+..+++++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            456789999999999999999999999998877777654 5666778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|||++++.+++.+..|+..+...      ....+.|++||+||+|+...+.....++..++...++++++|||++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  154 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL  154 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH------HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred             eeeecccccccccchhhhhhHHHHHH------hccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCc
Confidence            99999999999999999999988764      345789999999999998877888888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy12922        163 NIDEAFLTLARLIREQTR  180 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~  180 (184)
                      |++++|++|.+.+.++++
T Consensus       155 gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         155 NVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999877554

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=213.40  Aligned_cols=166  Identities=24%  Similarity=0.297  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||++++.+..+.. ..++ ........+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            799999999999999999998876533 2333 33455566778999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+...      .....+|+++|+||+|+.+.+++...++..++..+++++++|||++|.|++++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~------~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~  153 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRA------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL  153 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHH------CC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred             cccccccccccccccchhhcc------cccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999998775      44677899999999999887888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy12922        168 FLTLARLIREQTRL  181 (184)
Q Consensus       168 ~~~l~~~~~~~~~~  181 (184)
                      |++|.+.+...+..
T Consensus       154 f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         154 FEGVVRQIRLRRDS  167 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999988776654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-38  Score=213.19  Aligned_cols=168  Identities=40%  Similarity=0.706  Sum_probs=155.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.-+||+++|.+|||||||+++|....+...+.++.+.++....+.+++..+++.+|||||++.+..++..+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            56799999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++.+++....|+..+..       ......|+++|+||+|+.+.+.+...++..+++..++++++|||++|.||
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV  155 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQ-------YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV  155 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             Eeeecccchhhhhhhhhhhhhcc-------cccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCH
Confidence            99999999999999999998877       45678999999999999877778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      +++|.+|.+.+.+..
T Consensus       156 ~e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         156 EKLFLDLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998876544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-37  Score=211.87  Aligned_cols=167  Identities=46%  Similarity=0.805  Sum_probs=153.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      -++-+||+++|.+|||||||+++|....+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999998888899999888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN  163 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (184)
                      ++|+|+++++++.....|+..+..       ......|+++|+||+|+.+.+.+...+...+++..++++++|||++|.|
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~g  154 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKT-------YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN  154 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH-------HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             EEEEECccchhhhhhhhhhhhhhc-------ccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcC
Confidence            999999999999999998887776       4567899999999999988778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIRE  177 (184)
Q Consensus       164 v~~~~~~l~~~~~~  177 (184)
                      ++++|++|.+.+.+
T Consensus       155 v~e~f~~l~~~i~e  168 (169)
T d3raba_         155 VKQTFERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-38  Score=212.51  Aligned_cols=162  Identities=35%  Similarity=0.667  Sum_probs=151.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||+++|....+...+.++.+.+.........+..+.+.+||++|+.++..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888899998888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++++++.+..|+..+...        .+++|+++|+||+|+...+++...++..+++.++++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~--------~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE--------VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--------HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred             Eeccchhhhhhccccccccccc--------CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHH
Confidence            9999999999999999998764        35799999999999988788888889999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|++|.+.+.
T Consensus       154 ~f~~l~~~~l  163 (164)
T d1z2aa1         154 VFKYLAEKHL  163 (164)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-37  Score=209.11  Aligned_cols=172  Identities=38%  Similarity=0.695  Sum_probs=153.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.-+||+|+|.+|||||||++++.++.+...+.++.+.......+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            45689999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||.++++++.....|+..+...       ...++|+++|+||+|+.+.+.........+....+++++++||++|.|+
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~-------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i  154 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNV  154 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEECCCcccchhHHHHHHHHHHh-------cCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCH
Confidence            999999999999999999998874       4578999999999999876677777778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q psy12922        165 DEAFLTLARLIREQTRLQA  183 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~~~~  183 (184)
                      +++|+++.+.+.+...+++
T Consensus       155 ~e~f~~l~~~i~~~~~~~q  173 (175)
T d2f9la1         155 EEAFKNILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHhhhcc
Confidence            9999999999887666554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-37  Score=209.15  Aligned_cols=168  Identities=33%  Similarity=0.562  Sum_probs=147.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+++||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|...+...+..+++.+|+++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEE
Confidence            3459999999999999999999999998888888776 566677778999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|.+++++++.+..|+..+...      ......|++||+||+|+...+.+...++..+++..++++++|||++|.|+
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i  155 (171)
T d2erya1          82 LVFSVTDRGSFEEIYKFQRQILRV------KDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNV  155 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH------HTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             EeeccccccchhhHHHHhHHHHhh------cccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCH
Confidence            999999999999999999887764      34568999999999999888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIREQT  179 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~  179 (184)
                      +++|.+|.+.+.+.+
T Consensus       156 ~e~f~~l~~~i~k~~  170 (171)
T d2erya1         156 DQAFHELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999886543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=209.37  Aligned_cols=165  Identities=27%  Similarity=0.470  Sum_probs=149.8

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.+||+++|.+|||||||+++|....+...+.|+.+.++ ...+.+++..+.+.+||++|...+..++..+++.+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4678999999999999999999999998888888888665 466778999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||++++++++.+..|+..+...      ....++|+++|+||+|+...++++..++..+++.++++|++|||++|.|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v  154 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDM------VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA  154 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH------HCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhc------ccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence            999999999999999999988764      34568999999999999887888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIR  176 (184)
Q Consensus       165 ~~~~~~l~~~~~  176 (184)
                      +++|+.|++.+.
T Consensus       155 ~~~f~~li~~~~  166 (167)
T d1xtqa1         155 VDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-37  Score=207.47  Aligned_cols=164  Identities=41%  Similarity=0.795  Sum_probs=152.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++-+||+++|.+|||||||++++.+..+...+.++.+.++.......++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            45689999999999999999999999998888888888899889989999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|++++++++.+..|+..+..       ......|+++++||+|+.........++..+++..++++++|||++|.|+
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v  154 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARN-------LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV  154 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEeccCchHHHHHHHHHHHHHHh-------hccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999998877       45778999999999999887778888899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        165 DEAFLTLARLI  175 (184)
Q Consensus       165 ~~~~~~l~~~~  175 (184)
                      +++|++|.+.+
T Consensus       155 ~e~f~~i~~~i  165 (166)
T d1z0fa1         155 EDAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=210.64  Aligned_cols=164  Identities=36%  Similarity=0.700  Sum_probs=146.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +.+||+++|.+|||||||++++....+...+.++.+..........++..+.+.+||++|...+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            56899999999999999999999999999999999989999899899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |||++++++++.+..|+..+..       ......|+++|+||+|+...+.+...++..+++..++++++|||++|.|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~-------~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRK-------MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-------HHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred             EEeCCchhHHHhhhhhhhhccc-------ccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHH
Confidence            9999999999999999988776       345788999999999998888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      ++|.+|.+.+.
T Consensus       155 e~F~~l~~~i~  165 (167)
T d1z08a1         155 ELFLDLCKRMI  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.8e-37  Score=207.16  Aligned_cols=163  Identities=38%  Similarity=0.710  Sum_probs=152.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|.+|||||||+++|..+.+...+.++.............+....+.+||++|++.+..++..+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            57999999999999999999999999999999999988888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |||++++++++.+..|+..+..       ......|+++|+||+|+.+.+.+...++..++...+++|++|||++|.||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQ-------HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININ  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-------HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred             EeeechhhhhhhHHHhhhhhhh-------ccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence            9999999999999999988877       456789999999999998878888889999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        166 EAFLTLARLI  175 (184)
Q Consensus       166 ~~~~~l~~~~  175 (184)
                      ++|.+|.+++
T Consensus       156 e~f~~l~~~i  165 (167)
T d1z0ja1         156 ELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=207.61  Aligned_cols=162  Identities=37%  Similarity=0.703  Sum_probs=150.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||+++|....+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999899999988888888888899999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |++++.+++.+..|+..+...       ...++|+++|+||+|+.+.+.....+..++++..++++++|||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~-------~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTE-------RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL  153 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             ccccccchhhhHhhHHHHHHh-------cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            999999999999999988873       4578999999999999877788888899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        168 FLTLARLIR  176 (184)
Q Consensus       168 ~~~l~~~~~  176 (184)
                      |++|.+++.
T Consensus       154 f~~i~~~l~  162 (164)
T d1yzqa1         154 FRRVAAALP  162 (164)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhC
Confidence            999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=3.8e-37  Score=208.86  Aligned_cols=163  Identities=31%  Similarity=0.550  Sum_probs=145.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      -+||+++|.+|||||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|..++..++..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            479999999999999999999999998888888876554 5666899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|++++.+++.+..|+..+...      ....+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e  156 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH------HCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHh------hCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHH
Confidence            9999999999999999988774      3467899999999999988788888899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        167 AFLTLARLIR  176 (184)
Q Consensus       167 ~~~~l~~~~~  176 (184)
                      +|++|.+.+.
T Consensus       157 ~f~~l~~~i~  166 (168)
T d1u8za_         157 VFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=206.47  Aligned_cols=168  Identities=40%  Similarity=0.765  Sum_probs=149.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +-+||+|+|.+|||||||++++.+..+...+.++.+...........+....+.+||++|+..+..++..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            45899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.+++.+..|+..+..       ....++|++||+||+|+...+.........++...+++++++||++|.|++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~-------~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~  154 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQ-------HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE  154 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEeecChHHHHhHHHHHHHHHH-------hCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            9999999999999999998877       456789999999999998877888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy12922        166 EAFLTLARLIREQTR  180 (184)
Q Consensus       166 ~~~~~l~~~~~~~~~  180 (184)
                      ++|.+|.+.+.+..+
T Consensus       155 e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         155 EAFINTAKEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998875443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-37  Score=209.19  Aligned_cols=169  Identities=54%  Similarity=0.938  Sum_probs=127.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.-+||+++|.+|||||||+++|....+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            45689999999999999999999998888888899999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|||++++.+++.+..|+..+..       ....+.|+++|+||.|..........++..++...++++++|||++|+|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv  156 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV  156 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH-------HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred             EEEECCChhhHHHHHHHHHHhhh-------hccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            99999999999999999999877       45788999999999999887788888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      +++|++|.+.+.+...
T Consensus       157 ~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         157 ENAFFTLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999876654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=207.04  Aligned_cols=169  Identities=41%  Similarity=0.729  Sum_probs=155.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +..+||+++|.+|||||||++++....+...+.++.+.......+..++....+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            56799999999999999999999999998888888888888888888899999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      +|+|.++++++..+..|+..+..       ....++|+++|+||+|+....+........++...+++++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi  155 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARM-------LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV  155 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEecccchhHHHHhhhhccccc-------ccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCH
Confidence            99999999999999999998877       34678999999999999877788888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy12922        165 DEAFLTLARLIREQTR  180 (184)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (184)
                      +++|.++.+.+.+..+
T Consensus       156 ~e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         156 EEAFVQCARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999876544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-36  Score=204.24  Aligned_cols=164  Identities=33%  Similarity=0.557  Sum_probs=148.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            5899999999999999999999998888888877644 456667899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC-CHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI-NID  165 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~  165 (184)
                      ||++++.+++.+..|+..+...      ....+.|+++|+||+|+...+.+...++.++++.++++++++||+++. ||+
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~------~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRV------KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  156 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH------HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             cccccchhhhccchhhHHHHhh------ccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHH
Confidence            9999999999999999998764      345689999999999999888888899999999999999999999986 999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        166 EAFLTLARLIRE  177 (184)
Q Consensus       166 ~~~~~l~~~~~~  177 (184)
                      ++|..|.+.+.+
T Consensus       157 ~~F~~l~~~i~~  168 (169)
T d1x1ra1         157 KTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-36  Score=208.00  Aligned_cols=171  Identities=49%  Similarity=0.895  Sum_probs=157.4

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..+..+||+|+|.+|||||||+++|....+...+.++.+..+....+.+.+..+.+.+|||||++++..++..+++++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            45677999999999999999999999999988999999888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.++.....|+..+..       ......|+++|+||+|+.+...........++...+++++++||++|.
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~-------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~  154 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDR-------YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDST  154 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHH-------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCT
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhh-------cccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCc
Confidence            9999999999999999999888876       457889999999999999888888888899999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy12922        163 NIDEAFLTLARLIREQTR  180 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~  180 (184)
                      |++++|++|.+.+.+...
T Consensus       155 gi~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         155 NVEDAFLTMARQIKESMS  172 (194)
T ss_dssp             THHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHHhh
Confidence            999999999998876443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=205.25  Aligned_cols=165  Identities=30%  Similarity=0.486  Sum_probs=144.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|++|||||||++++..+.+...+.|+.+..+... ...++..+.+.+||++|...+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999999888899888766544 4478888999999999998764 456678899999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC-HH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN-ID  165 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~  165 (184)
                      +|++++.+++.+..|+......      ....+.|+++|+||+|+...+.+...++..+++.++++|+++||++|.| |+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~  153 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNIT  153 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH------HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHH
T ss_pred             cccCCccchhhhhhhccccccc------ccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHH
Confidence            9999999999999887766553      3457899999999999988788899999999999999999999999985 99


Q ss_pred             HHHHHHHHHHHHHH
Q psy12922        166 EAFLTLARLIREQT  179 (184)
Q Consensus       166 ~~~~~l~~~~~~~~  179 (184)
                      ++|.+|.+.+.+++
T Consensus       154 e~F~~l~~~i~~~r  167 (168)
T d2atva1         154 EIFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=209.94  Aligned_cols=171  Identities=41%  Similarity=0.726  Sum_probs=151.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC----------eeEEEEEEeCCCccccccchH
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----------VPTKLQIWDTAGQERFRTLTT   74 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~G~~~~~~~~~   74 (184)
                      +.-+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++          ..+.+.+||++|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            5679999999999999999999999999888888888777776665543          346789999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922         75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY  154 (184)
Q Consensus        75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (184)
                      .+++++|++++|||++++.+++.+..|+..+...      ......|+++|+||+|+...+++...++.++++.++++++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~  156 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF  156 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhh------ccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999998776543      4567899999999999988888999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922        155 EVSCKQNINIDEAFLTLARLIREQTRL  181 (184)
Q Consensus       155 ~~Sa~~~~gv~~~~~~l~~~~~~~~~~  181 (184)
                      ++||++|.|++++|++|.+.+.+..++
T Consensus       157 e~Sak~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         157 ETSAATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998765543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=207.58  Aligned_cols=168  Identities=24%  Similarity=0.365  Sum_probs=144.7

Q ss_pred             CCCC--CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc
Q psy12922          1 MADC--NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR   78 (184)
Q Consensus         1 ~~~~--~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   78 (184)
                      |+++  ...+||+++|.+|||||||+++|..+.+...+.++.+ +.....+...+..+.+.+||++|++.+...+..+++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            5666  6779999999999999999999999998888888876 556666778888999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHH
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLA  146 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~  146 (184)
                      ++|++++|||++++++++....|+.....       ....+.|+++|+||+|+.+            .+.+...++.+++
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~-------~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a  152 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELK-------EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA  152 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHH-------HHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHH-------hcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHH
Confidence            99999999999999999887655544444       2356899999999999864            3566778888999


Q ss_pred             HhcC-CCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        147 DNYS-LPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       147 ~~~~-~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +..+ ++|++|||++|.||+++|+.+.+++.
T Consensus       153 ~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         153 KEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            8887 69999999999999999999988764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=205.48  Aligned_cols=164  Identities=34%  Similarity=0.622  Sum_probs=148.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|.+|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|.+.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            579999999999999999999999998888877776 5566677789999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.++..+..|+..+...      ....++|++||+||+|+...+.....++..+++..+++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~  154 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH------TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhh------ccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHH
Confidence            99999999999999999888764      345789999999999998877888888999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      ++|++|.+++.
T Consensus       155 e~f~~i~~~i~  165 (167)
T d1kaoa_         155 ELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=204.59  Aligned_cols=162  Identities=43%  Similarity=0.767  Sum_probs=151.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||+++|..+.+...+.++.+..+........+..+.+.+||++|++.+...+..+++++|++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            57999999999999999999999999999999999898888888899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +|.+++++++....|+..+..       ...++.|+++|+||+|+.+.+.++......++...+++++++||++|.||++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQR-------QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH-------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             eccchhhHHHHHHHHhhhhhh-------ccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHH
Confidence            999999999999999998876       4567899999999999988888899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      +|.+|.+.+
T Consensus       159 ~f~~l~~~i  167 (170)
T d1r2qa_         159 IFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
Confidence            999998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=205.31  Aligned_cols=163  Identities=31%  Similarity=0.501  Sum_probs=144.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|||||||+++|....+...+.++.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999998888888887444 44566889999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||++++++++.+..|+..+....     ....++|+++|+||+|+...+++...++..+++.+++++++|||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIK-----GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHH-----C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccchhhhhhhhh-----ccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHH
Confidence            99999999999999988876531     3457899999999999988788888899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12922        167 AFLTLARLI  175 (184)
Q Consensus       167 ~~~~l~~~~  175 (184)
                      +|..|.+.+
T Consensus       156 ~f~~l~~~~  164 (171)
T d2erxa1         156 LFQELLNLE  164 (171)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            999988754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-37  Score=208.93  Aligned_cols=164  Identities=30%  Similarity=0.618  Sum_probs=143.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||+++|..+.+...+.|+.+.++....+..++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999889999999999988888899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      ||++++++++.+..|+..+...        ..++|+++|+||+|+...+...  ....++...+++++++||++|.|+++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~--------~~~~piilvgnK~Dl~~~~~~~--~~~~~~~~~~~~~~e~Sak~~~~v~e  152 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRV--------CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEK  152 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHH--------HCSCCEEEEEECCCCSCSCCTT--TSHHHHSSCSSEEEEEBTTTTBTTTH
T ss_pred             cccccccccchhHHHHHHHhhc--------cCCCceeeecchhhhhhhhhhh--HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988764        3589999999999997654333  34567888899999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12922        167 AFLTLARLIREQTR  180 (184)
Q Consensus       167 ~~~~l~~~~~~~~~  180 (184)
                      +|++|.+.+...+.
T Consensus       153 ~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         153 PFLWLARKLIGDPN  166 (170)
T ss_dssp             HHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHccCCC
Confidence            99999998875443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=201.02  Aligned_cols=164  Identities=33%  Similarity=0.572  Sum_probs=145.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|...+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            468999999999999999999999999888888877444 4556678888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCCCCH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINI  164 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv  164 (184)
                      |+|++++.+++.+..|+..+...      ...+++|+++|+||+|+.........+...+++.. ++++++|||++|.|+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~------~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv  154 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV  154 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH------HCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred             eeeccchhhhHhHHHHHHHHHHh------cCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCH
Confidence            99999999999999999988764      34578999999999999887788888888888774 689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy12922        165 DEAFLTLARLIR  176 (184)
Q Consensus       165 ~~~~~~l~~~~~  176 (184)
                      +++|++|.+.+.
T Consensus       155 ~e~F~~l~~~i~  166 (167)
T d1c1ya_         155 NEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=198.55  Aligned_cols=166  Identities=48%  Similarity=0.870  Sum_probs=141.8

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCc-cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      .+..+||+++|.+|||||||++++..+.+... ..++.+.++....+...+..+++.+|||||++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            35679999999999999999999999887544 45556778888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      +++|+|++++.+++....|+..+..       ......|+++|+||+|......+...++..+++..+++++++||++|.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~  155 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHE-------YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGL  155 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred             eEEEecCCcccchhhhhhhhhhhhh-------ccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCc
Confidence            9999999999999999998888777       346788999999999999888888889999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIR  176 (184)
Q Consensus       163 gv~~~~~~l~~~~~  176 (184)
                      |++++|++|.+.+.
T Consensus       156 gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         156 NVDLAFTAIAKELK  169 (170)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcC
Confidence            99999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=200.42  Aligned_cols=163  Identities=37%  Similarity=0.680  Sum_probs=149.5

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..+||+++|.+|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|.+.+..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999988888889899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC---CccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT---QRAVQTKDAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      |||++++.+++.+..|+.....       ......|+++|+||+|+.+   .+.+...++..+++..+++++++||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~  154 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHE-------QASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE  154 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-------HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEeCCcccchhhhhhhhhhhcc-------ccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCc
Confidence            9999999999999999987776       4567899999999999854   46778888999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLI  175 (184)
Q Consensus       163 gv~~~~~~l~~~~  175 (184)
                      |++++|.+|.+.+
T Consensus       155 gV~e~F~~i~~~i  167 (170)
T d1ek0a_         155 NVNDVFLGIGEKI  167 (170)
T ss_dssp             THHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999987654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=201.25  Aligned_cols=162  Identities=23%  Similarity=0.416  Sum_probs=140.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      +.||+++|.+|||||||++++....+...+.|+.+ +.........+..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999888888776 55556667888999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF  153 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  153 (184)
                      ||++++++++....|+......       ..++.|++||+||+|+...            +.+...+...+++..++ +|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~-------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~  153 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKH-------FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY  153 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHH-------HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             cccchhHHHHHHHHHHHHHHHH-------hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEE
Confidence            9999999999887765555542       3568999999999999642            34667778899999885 89


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ++|||++|.|++++|+.+.+++.
T Consensus       154 ~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         154 MECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999999998775

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=199.48  Aligned_cols=169  Identities=44%  Similarity=0.719  Sum_probs=153.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..+||+++|.+|||||||+++|.+..+...+.++.+..+....+.+++..+.+.+||+||++.+..++..++..+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988888988888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|++++.+++....|+..+...      ......|+++++||.|... +.+...+...+++..+++++++||++|.|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETY------CTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTC------CSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             EEECCCccccccchhhhhhhccc------ccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHH
Confidence            99999999999999999988764      4466799999999999765 5777788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy12922        166 EAFLTLARLIREQTRL  181 (184)
Q Consensus       166 ~~~~~l~~~~~~~~~~  181 (184)
                      ++|+++.+.+.+.+..
T Consensus       159 e~f~~l~~~l~~~p~l  174 (177)
T d1x3sa1         159 CAFEELVEKIIQTPGL  174 (177)
T ss_dssp             HHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHccCccc
Confidence            9999999988876544

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-35  Score=198.52  Aligned_cols=163  Identities=34%  Similarity=0.618  Sum_probs=145.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|.+|||||||+++|.+..+...+.++.+..+... +...+..+.+.+||++|.+.+...+..++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            468999999999999999999999998888888888655544 5578888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID  165 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  165 (184)
                      |+|.+++.+++.+..|+..+...      ....++|+++|+||+|+.. +.....++..+++..+++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~  153 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVE  153 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH------HTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             eecccccccHHHHHHHHHHHHHh------cCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHH
Confidence            99999999999999999998875      3456899999999999865 4566778889999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        166 EAFLTLARLIR  176 (184)
Q Consensus       166 ~~~~~l~~~~~  176 (184)
                      ++|++|++.+.
T Consensus       154 e~f~~i~~~i~  164 (166)
T d1ctqa_         154 DAFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-35  Score=198.38  Aligned_cols=162  Identities=51%  Similarity=0.921  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++++|+
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            79999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA  167 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  167 (184)
                      |.+++++++.+..|+..+..       ......|++++++|.|+.. +.........++...++++++|||++|.|++++
T Consensus        83 d~~~~~s~~~~~~~~~~~~~-------~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~  154 (166)
T d1g16a_          83 DITDERTFTNIKQWFKTVNE-------HANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEI  154 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             ECCCccCHHHHHhhhhhhhc-------cccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHH
Confidence            99999999999999888887       5677899999999999865 456667788899999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12922        168 FLTLARLIRE  177 (184)
Q Consensus       168 ~~~l~~~~~~  177 (184)
                      |++|.+.+.+
T Consensus       155 f~~l~~~i~~  164 (166)
T d1g16a_         155 FFTLAKLIQE  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=201.15  Aligned_cols=167  Identities=22%  Similarity=0.362  Sum_probs=141.6

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCC---ccccccchHhhhcCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG---QERFRTLTTAYYRGA   80 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---~~~~~~~~~~~~~~~   80 (184)
                      +..+||+++|.+|+|||||++++....+. ....++++.+.....+.+++..+.+.+||++|   ++++  ++..+++.+
T Consensus         1 ~~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~   78 (172)
T d2g3ya1           1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVG   78 (172)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCC
T ss_pred             CCEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--ccccccccc
Confidence            35799999999999999999999987653 34455666678888888899999999999765   4444  456788999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
                      |++++|||++++.+++.+..|+..+...      ....++|+++|+||+|+.+.+++...++..++..++++++++||++
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~------~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~  152 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV  152 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTS------GGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhc------cccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCC
Confidence            9999999999999999999999988763      3456899999999999988888888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLIREQT  179 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~~~~~  179 (184)
                      |.|++++|++|.+.+..++
T Consensus       153 g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         153 QHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             TBSHHHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHHHcc
Confidence            9999999999999886654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-34  Score=197.23  Aligned_cols=170  Identities=38%  Similarity=0.648  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+|+|.+|||||||++++.++.+...+.++.+.++........+..+.+.+||++|...+...+..++..+|++++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999998899999988898888888999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-HhcCCCEEEeecCCCCCHHH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      |.+++.+++.+..|+..+......   ....++|+++|+||+|+.+. .....+...++ ...++++++|||++|.|+++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  158 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASP---RDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  158 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCC---SSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhcc---ccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHH
Confidence            999999999999999888764211   23457899999999998764 45555555555 45578999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy12922        167 AFLTLARLIREQTRL  181 (184)
Q Consensus       167 ~~~~l~~~~~~~~~~  181 (184)
                      +|++|.+.+.+.+..
T Consensus       159 ~f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         159 AFQTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999987765443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=200.10  Aligned_cols=165  Identities=24%  Similarity=0.377  Sum_probs=142.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +.+||+++|.+|||||||+++|..+.+...+.++.+ ..........+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            468999999999999999999999999888888887 4455566678889999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC-CC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS-LP  152 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~  152 (184)
                      |||++++++++.+..|+.....       ....+.|+++|+||+|+..            .+.+...++..++...+ ++
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~-------~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEIT-------HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVK  153 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHH-------HHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSC
T ss_pred             ccccchHHHHHHHHHHHHHHHh-------hcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCe
Confidence            9999999999999876655555       2357899999999999853            33567778888998864 79


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      |+++||++|.||+++|+.+...+.+.
T Consensus       154 ~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         154 YVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999999999877654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-34  Score=195.63  Aligned_cols=170  Identities=41%  Similarity=0.679  Sum_probs=132.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      -+||+++|.+|||||||+++|.+..+...+.++.+........... .....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            3799999999999999999999999888888877766666655444 344568999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc-cccHHHHHHHHHhcC-CCEEEeecCCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR-AVQTKDAQMLADNYS-LPFYEVSCKQNIN  163 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  163 (184)
                      |+|++++.+++.+..|+.++......   ....++|+++|+||+|+.+.+ .....++.+++...+ +++++|||++|.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g  158 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANV---NSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  158 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCC---SCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             Eeecccccccchhhhcchhhhhhhhh---cccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcC
Confidence            99999999999999999988764211   334688999999999997643 467778888998886 7999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIREQT  179 (184)
Q Consensus       164 v~~~~~~l~~~~~~~~  179 (184)
                      ++++|++|.+.+.+.+
T Consensus       159 v~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         159 VDTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-34  Score=192.30  Aligned_cols=159  Identities=42%  Similarity=0.806  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-chHhhhcCCcEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-LTTAYYRGAMGILL   85 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~   85 (184)
                      .+||+++|.+|||||||++++....+...+.++.+................+.+||++|...+.. .+..+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            48999999999999999999999999888889888888888888899999999999999876654 56778999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC---CC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~  162 (184)
                      |||++++.+++.+..|+..+...      ....++|++||+||+|+.+.+++...++..+++.+++++++|||++   +.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~  155 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQH------LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  155 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH------CCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             EEEeehhhhhhhhhhhhHHHHhh------ccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCc
Confidence            99999999999999999998775      4567899999999999988788899999999999999999999996   56


Q ss_pred             CHHHHHHHH
Q psy12922        163 NIDEAFLTL  171 (184)
Q Consensus       163 gv~~~~~~l  171 (184)
                      ||+++|.+|
T Consensus       156 ~V~e~F~~l  164 (165)
T d1z06a1         156 HVEAIFMTL  164 (165)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHh
Confidence            999999876

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=191.70  Aligned_cols=168  Identities=35%  Similarity=0.617  Sum_probs=145.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      +.-+||+|+|.+|||||||++++....+...+.++.+...........+..+.+.+||++|...+...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            34579999999999999999999999998889999988888888888999999999999999988888899999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNIN  163 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  163 (184)
                      +++|.+++.+++.+..|+..+.....   .....+.|+++|+||+|+.+ +.+...++.++++..+ ++|++|||++|.|
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~g  159 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYAD---VKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATN  159 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT---CSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEeeecccccchhhhHHHHHHHHhc---cccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcC
Confidence            99999999999999999988766421   13456799999999999865 5778888889998764 7999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12922        164 IDEAFLTLARLIR  176 (184)
Q Consensus       164 v~~~~~~l~~~~~  176 (184)
                      |+++|++|.+.+.
T Consensus       160 I~e~f~~l~~~il  172 (174)
T d1wmsa_         160 VAAAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=197.26  Aligned_cols=164  Identities=24%  Similarity=0.401  Sum_probs=140.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      .+.+||+|+|.+|||||||+++|..+.+...+.++.. +.....+..++..+++.+||++|++.+...+..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4679999999999999999999999999888888876 455566778999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcC-C
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYS-L  151 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~  151 (184)
                      +|||++++++++.+..|+.....       ....++|++||+||+|+...            ......+...+++..+ +
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~-------~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  154 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVR-------HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  154 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHH-------HHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             eeeccchHHHHHHHHHHHHHHHH-------HhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCc
Confidence            99999999999998765444444       23568999999999998543            2345556778888877 7


Q ss_pred             CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        152 PFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       152 ~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +|++|||++|.||+++|.++.+.+.
T Consensus       155 ~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         155 KYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             eEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-33  Score=193.03  Aligned_cols=163  Identities=23%  Similarity=0.415  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      ++||+++|.+|||||||++++..+.+...+.|+.. +........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            58999999999999999999999999888888766 45555666788999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC-CCE
Q psy12922         87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS-LPF  153 (184)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~  153 (184)
                      ||++++++++.+..|+.....       ....+.|+++|+||+|+..            .+.+...+...+++..+ ++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~-------~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y  153 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQ-------EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY  153 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHH-------HHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             eecccCCCHHHHHHHHHHHHh-------ccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeE
Confidence            999999999998876655544       2356899999999999853            35577788888998887 589


Q ss_pred             EEeecCCCC-CHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNI-NIDEAFLTLARLIRE  177 (184)
Q Consensus       154 ~~~Sa~~~~-gv~~~~~~l~~~~~~  177 (184)
                      ++|||++|. |++++|+.+...+..
T Consensus       154 ~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         154 IECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            999999998 599999999887753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-32  Score=184.48  Aligned_cols=167  Identities=20%  Similarity=0.331  Sum_probs=136.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      ..+||+++|.+|||||||++++....+.. ..++.. +.....+.+++..+.+.+||++|+..+     .+++.+|++++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            46999999999999999999999988754 344444 444566778999999999999998654     37889999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--CccccHHHHHHHHHh-cCCCEEEeecCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRAVQTKDAQMLADN-YSLPFYEVSCKQNI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~  162 (184)
                      |||++++.+++.+..|+..+....    .......|+++|+||.|+..  .+.+...++..++.. .+++|++|||++|.
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~----~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLR----GEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGL  152 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTB
T ss_pred             EeecccchhhhhhHHHHHHHHHHh----hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCc
Confidence            999999999999999988886531    13456789999999988743  456777778878655 46899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhc
Q psy12922        163 NIDEAFLTLARLIREQTRLQA  183 (184)
Q Consensus       163 gv~~~~~~l~~~~~~~~~~~~  183 (184)
                      |++++|..+.+.+...++.++
T Consensus       153 ~v~~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         153 NVDRVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             THHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999888777654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=187.93  Aligned_cols=158  Identities=23%  Similarity=0.417  Sum_probs=128.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|++|||||||+++|..+.+...+.||.+..+..  +..++  +.+.+||+||+..+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeeee--EEEEEeeccccccccccccccccccchhhc
Confidence            47999999999999999999999999888888877755543  33444  569999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH----HHHhcCCCEEEeecCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM----LADNYSLPFYEVSCKQN  161 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~  161 (184)
                      |+|++++++++....++..+...      ...+++|+++|+||.|+.+...... ....    .+...+++++++||++|
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~------~~~~~~pi~lv~nK~Dl~~~~~~~~-i~~~~~~~~~~~~~~~~~e~Sa~~g  149 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDK------PQLQGIPVLVLGNKRDLPGALDEKE-LIEKMNLSAIQDREICCYSISCKEK  149 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC------GGGTTCCEEEEEECTTSTTCCCHHH-HHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             ccccccccccchhhhhhhhhhhh------hcccCCcEEEEEeccccchhhhHHH-HHHHHHHHHHHhCCCEEEEEeCcCC
Confidence            99999999999998888877663      3457899999999999875322211 1111    12233567899999999


Q ss_pred             CCHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARL  174 (184)
Q Consensus       162 ~gv~~~~~~l~~~  174 (184)
                      .|++++|+||.+.
T Consensus       150 ~gv~e~~~~l~~~  162 (164)
T d1zd9a1         150 DNIDITLQWLIQH  162 (164)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHc
Confidence            9999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=1.9e-31  Score=179.99  Aligned_cols=161  Identities=20%  Similarity=0.292  Sum_probs=123.9

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|.+|||||||+++|.+..+. ...++.+.  ....+...+  +.+.+||+||++.+...+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEee--eeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            4689999999999999999999887653 44555543  333344444  569999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH---HhcCCCEEEeecCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA---DNYSLPFYEVSCKQNI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~  162 (184)
                      |+|.++..++.....++......      ....+.|+++|+||+|+.+.............   ...++++++|||++|+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVE------ERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeecccchhHHHHHHhhhhhhhh------cccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            99999999988887776665543      34568999999999999764433332221111   1224578999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIRE  177 (184)
Q Consensus       163 gv~~~~~~l~~~~~~  177 (184)
                      |++++|+||.+.+.+
T Consensus       150 gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         150 DLLPGIDWLLDDISS  164 (165)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999988753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.98  E-value=5.2e-32  Score=184.59  Aligned_cols=161  Identities=20%  Similarity=0.297  Sum_probs=124.7

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG   82 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   82 (184)
                      ..++++||+++|++|||||||+++|.++.+.. ..++.+  +....+...+  +.+.+||++|.+.+...+..++..+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            45778999999999999999999999987743 233333  3333444444  569999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH-HH--HHHHHhcCCCEEEeecC
Q psy12922         83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK-DA--QMLADNYSLPFYEVSCK  159 (184)
Q Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~--~~~~~~~~~~~~~~Sa~  159 (184)
                      +++|+|++++.++.....++..+...      ....++|+++|+||+|+......... +.  ...+....+++++|||+
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~------~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  160 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEE------EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSAL  160 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTC------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhh------hccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            99999999999999998888777653      34567999999999999764332211 11  11122335679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARL  174 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~  174 (184)
                      +|+|++++|+||.+.
T Consensus       161 tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         161 TGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TCTTHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHhc
Confidence            999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=3.5e-32  Score=186.49  Aligned_cols=163  Identities=23%  Similarity=0.321  Sum_probs=122.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      ..+++||+++|.+|||||||+++|....+. ...++.+...  ......  .+.+.+||+||++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEE--EEEeeC--CEEEEEEecccccccchhHHhhhccceeE
Confidence            467899999999999999999999887653 2334444333  333334  45699999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-----HHHhcCCCEEEeec
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-----LADNYSLPFYEVSC  158 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa  158 (184)
                      ++|+|++++.++.....|+......      ....+.|+++|+||+|+.+...  ..+..+     .+...++++++|||
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~------~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQE------EELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTS------STTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             EEEeeecccccchhHHHHHHHHHHh------hccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCCEEEEEEC
Confidence            9999999999998888877765543      4567899999999999975322  222211     22333567999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ++|+|++++|+||.+.+.+.+
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcC
Confidence            999999999999999887643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=181.48  Aligned_cols=161  Identities=20%  Similarity=0.311  Sum_probs=123.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .++++||+++|.+|||||||++++....+.. ..++.+...  ......  ...+.+||+||...+...+..+++.++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EEEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EEeecc--ceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            4678999999999999999999999877543 334444333  333333  35699999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH---HHHHHhcCCCEEEeecCC
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA---QMLADNYSLPFYEVSCKQ  160 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~  160 (184)
                      ++|+|+++.+++.....|+......      ......|+++|+||+|+.+.........   ...+...++.+++|||++
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~------~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~t  157 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIIND------REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS  157 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTS------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEecccchhHHHHHHHHHHHhhh------cccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCC
Confidence            9999999999999988877776553      3456899999999999975322221111   112223356789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy12922        161 NINIDEAFLTLARLI  175 (184)
Q Consensus       161 ~~gv~~~~~~l~~~~  175 (184)
                      |+|++++|+||.+.+
T Consensus       158 g~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         158 GDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHhc
Confidence            999999999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=170.17  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY   87 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   87 (184)
                      +||+++|++|||||||+++|.+..+..........     ........+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988775443333221     1223455667999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH---HHHHHHhcCCCEEEeecCCCCCH
Q psy12922         88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD---AQMLADNYSLPFYEVSCKQNINI  164 (184)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv  164 (184)
                      |.+++.++.....|+..+...      ......|+++++||.|+.+........   ...++...+++++++||++|+|+
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi  149 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAE------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL  149 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EecChHHHHHHHHHHHHHHHh------hcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCH
Confidence            999999999988888887764      445789999999999987643222211   12233445678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12922        165 DEAFLTLARLI  175 (184)
Q Consensus       165 ~~~~~~l~~~~  175 (184)
                      +++|+||.+++
T Consensus       150 ~e~~~~l~~~l  160 (160)
T d1r8sa_         150 YEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=9e-28  Score=163.38  Aligned_cols=158  Identities=21%  Similarity=0.275  Sum_probs=117.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++++||+|+|.+|||||||++++.+..+... .++..  .........  ...+.+||++|.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~--~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC--SSCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccc--eeEEEEeec--ceEEEEeccccccccccchhhhhccceeee
Confidence            5679999999999999999999999776432 22222  122222233  345999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH-----HHhcCCCEEEeecC
Q psy12922         85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML-----ADNYSLPFYEVSCK  159 (184)
Q Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~  159 (184)
                      +++|.++..++.....+.......      ......|+++|+||+|+......  .+....     +...+++++++||+
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~Sa~  159 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAH------EDLRKAGLLIFANKQDVKECMTV--AEISQFLKLTSIKDHQWHIQACCAL  159 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS------GGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             eecccccccchhhhhhhhhhhhhc------ccccceEEEEEEEcccccccCcH--HHHHHHHHHHhhHhcCCEEEEEeCC
Confidence            999999999988877766666553      45679999999999998754322  122221     22345689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy12922        160 QNINIDEAFLTLARLI  175 (184)
Q Consensus       160 ~~~gv~~~~~~l~~~~  175 (184)
                      +|+|++++++||.+++
T Consensus       160 tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         160 TGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=154.42  Aligned_cols=161  Identities=22%  Similarity=0.328  Sum_probs=121.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|.+|||||||++++.+..+... .++.+  .........+  ..+.++|.+|...+.......+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            459999999999999999999999887532 33333  2222333343  458999999999999888889999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCCCC
Q psy12922         86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQNI  162 (184)
Q Consensus        86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
                      ++|+.+..+......+.......      ......|+++++||.|+.+.......   ....++...+++++++||++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~  152 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEE------EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT  152 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred             hhhhhhcchhhhccchhhhhhhh------hccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            99999888777776655544432      34578999999999999764332221   1222344556889999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12922        163 NIDEAFLTLARLIRE  177 (184)
Q Consensus       163 gv~~~~~~l~~~~~~  177 (184)
                      |++++|++|.+.+.+
T Consensus       153 gv~e~~~~l~~~l~~  167 (169)
T d1upta_         153 GLDEAMEWLVETLKS  167 (169)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999887753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.3e-25  Score=148.40  Aligned_cols=152  Identities=23%  Similarity=0.311  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD   88 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   88 (184)
                      ||+++|++|||||||+++|.++.+. ...|+.+...  ......+.  ...+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGNI--KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEECCTTC--CEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE--EEeccCCe--eEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998764 3344444333  33333443  48999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH------------HhcCCCEEEe
Q psy12922         89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA------------DNYSLPFYEV  156 (184)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~  156 (184)
                      .++...+.....++......      ....+.|+++++||.|+....  .........            ....+++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNI------AELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMC  148 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTC------TTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEE
T ss_pred             ccchhhhhhhhHHHHhhhhh------hccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEe
Confidence            99998888877777666554      556789999999999987532  222222221            1223568999


Q ss_pred             ecCCCCCHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLAR  173 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~  173 (184)
                      ||++|+|++++|+||.+
T Consensus       149 SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         149 SVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             BTTTTBSHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHhC
Confidence            99999999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.5e-26  Score=155.00  Aligned_cols=151  Identities=20%  Similarity=0.262  Sum_probs=110.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhhc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYYR   78 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~   78 (184)
                      +||+++|.+|||||||+|+|++.... ....+.++.......+...+..  +.++|+||......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCce--eeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987653 3444555545555555556654  88999999543221        1235568


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      .+|++++++|..+..+.+....|...+..        ...++|+++|+||+|+.......       ....+.+++++||
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSA  144 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR--------LPAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSA  144 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH--------SCTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCT
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh--------cccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEEC
Confidence            89999999999988776666665555544        24579999999999986532211       1233578999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLI  175 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~  175 (184)
                      ++|.|+++++++|.+.+
T Consensus       145 k~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.3e-25  Score=152.90  Aligned_cols=156  Identities=13%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAYY   77 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~   77 (184)
                      .-.|+|+|.+|||||||+|+|++... .....+.++...........+.  .+.+|||||.......        ...++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRR--QIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTE--EEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeee--eeeecccccccccccccchhccccccccc
Confidence            34799999999999999999998764 2233444444555555545554  4899999996433222        23456


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEe
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEV  156 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~  156 (184)
                      ..+|++++|+|++++..... ..+...+..        ...+.|+++|+||+|+....   ......+....+ ..++++
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~--------~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~i  150 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKP--------LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRML  150 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGG--------GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEEC
T ss_pred             ccccceeeeechhhhhcccc-cchhhheec--------cccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEE
Confidence            78999999999987644322 334444433        24578999999999986532   222344444444 478899


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ||++|.|+++++++|.+.+.
T Consensus       151 SA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         151 SALDERQVAELKADLLALMP  170 (178)
T ss_dssp             CTTCHHHHHHHHHHHHTTCC
T ss_pred             ecCCCCCHHHHHHHHHHhCC
Confidence            99999999999999987664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.6e-25  Score=152.75  Aligned_cols=160  Identities=14%  Similarity=0.086  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----cc---chHhhhcCCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RT---LTTAYYRGAM   81 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~---~~~~~~~~~d   81 (184)
                      +|+++|.+|||||||+|+|++...........+........ .......+.+|||||....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999866543333444433333333 2333345899999994321    11   1234467899


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922         82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN  161 (184)
Q Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
                      ++++++|..... ......+...+....     ....++|+++|+||+|+.....  .....+.....+.+++.+||++|
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~-----~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg  153 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYD-----PALLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTG  153 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHC-----HHHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTC
T ss_pred             hhhhhccccccc-ccchhhhhhhhhccc-----cccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCC
Confidence            999999986532 233333333332210     1123579999999999976332  23345555667889999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy12922        162 INIDEAFLTLARLIRE  177 (184)
Q Consensus       162 ~gv~~~~~~l~~~~~~  177 (184)
                      +|++++++.|.+.+..
T Consensus       154 ~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         154 AGLPALKEALHALVRS  169 (180)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999888764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=3.3e-25  Score=151.04  Aligned_cols=159  Identities=13%  Similarity=0.136  Sum_probs=106.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc-------ccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-------TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR   78 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   78 (184)
                      +.++|+++|++|||||||+|+|++.........       ..+.......+...+  ..+.++|+||+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            568999999999999999999996432211111       111111222222333  34889999999988888888889


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHHh----cCCC
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLADN----YSLP  152 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~  152 (184)
                      .+|++++++|+.++...+. ...+..+..          .++|+++|+||+|+.......  ......+...    .+.+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~-~~~~~~~~~----------~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQT-GEHMLILDH----------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  150 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHH-HHHHHHHHH----------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             hccccccccccccccchhh-hhhhhhhhh----------cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence            9999999999997643322 233333433          478999999999987632221  1112222222    2468


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ++++||++|+|++++++.|.+.+.+
T Consensus       151 iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         151 IIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCcCHHHHHHHHHhcCCc
Confidence            9999999999999999999988875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=1.1e-24  Score=148.74  Aligned_cols=159  Identities=19%  Similarity=0.289  Sum_probs=112.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI   83 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   83 (184)
                      .+++.||+++|.+|||||||+++|.++.+... .++.+..  ...+..++..  +..||+.|...+...+..+....+++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAGMT--FTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETTEE--EEEEEECC----CCGGGGGGGGCSEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEecccc--cccccccchhhhhhHHhhhhccccee
Confidence            46789999999999999999999998876432 3333322  2334455544  78999999999888899999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH----------------
Q psy12922         84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD----------------  147 (184)
Q Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------  147 (184)
                      ++++|.++.........+.......      ....+.|+++++||.|+...  ...........                
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTD------ETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKEL  156 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTC------GGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred             eeeeeccCccchHHHHHHHHHhhcc------cccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHh
Confidence            9999999988887776655555443      34578999999999998753  23333332222                


Q ss_pred             -hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        148 -NYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       148 -~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                       ..++++++|||++|+|++++|+||.+.+
T Consensus       157 ~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         157 NARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence             1134589999999999999999998754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=9.1e-26  Score=156.00  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=120.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|..|||||||+++|....+  .+.||.+.....  +  ......+++||++|++.+...+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP--F--DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE--E--ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE--E--eccceeeeeccccccccccccccccccccceeeE
Confidence            479999999999999999999988876  356777755433  2  3344569999999999999999999999999999


Q ss_pred             EEeCCChh-----------HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc----------------ccc
Q psy12922         86 MYDVTNLE-----------SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR----------------AVQ  138 (184)
Q Consensus        86 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------------~~~  138 (184)
                      ++|.++..           ..+....|...+..       ....+.|+++++||.|+....                ..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~-------~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  147 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITY-------PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD  147 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHC-------GGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSC
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhh-------hhccCccEEEecchhhhhhhcccchHHHHhcccccCCchh
Confidence            99998753           34555666666655       456899999999999973210                111


Q ss_pred             HHHHHHHH----H------hcCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        139 TKDAQMLA----D------NYSLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       139 ~~~~~~~~----~------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                      ......+.    .      ...+.++++||++|+|++++|+.+.+.+.+..
T Consensus       148 ~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         148 AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            11111111    1      11344789999999999999999988887543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.8e-24  Score=145.91  Aligned_cols=162  Identities=19%  Similarity=0.145  Sum_probs=108.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------------c
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------------T   71 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------------~   71 (184)
                      ++.+||+|+|.+|||||||+|+|++... .....+.++.......+..++..  +.++|+||.....            .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhH
Confidence            4569999999999999999999998654 22333444444444445566654  7888999953221            2


Q ss_pred             chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh---
Q psy12922         72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN---  148 (184)
Q Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---  148 (184)
                      .....+..+|++++|+|+..+.. +....+...+..          .+.|+++|+||+|+............+....   
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~----------~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~  152 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER----------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY  152 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH----------cCCceeeeccchhhhcchhhhhhhHHHHHHHHhc
Confidence            23445678999999999986533 223344444444          4789999999999876554444433332221   


Q ss_pred             --cCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922        149 --YSLPFYEVSCKQNINIDEAFLTLARLIREQT  179 (184)
Q Consensus       149 --~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~  179 (184)
                        ..++++++||++|.|+++++++|.+.+..+.
T Consensus       153 ~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~~  185 (186)
T d1mkya2         153 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT  185 (186)
T ss_dssp             GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             ccCCCeEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence              2468999999999999999999988877653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.8e-24  Score=146.23  Aligned_cols=155  Identities=19%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------cccchHhhhc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------FRTLTTAYYR   78 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~   78 (184)
                      .|+++|.+|||||||+++|++.... ....+..+.......+....  ..+.++|++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999986542 23333333333333333333  3589999999321         1222344568


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922         79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC  158 (184)
Q Consensus        79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
                      .+|+++++.|.+.+.... ...++..+..          .++|+++|+||+|+.++  .......++.......++++||
T Consensus        80 ~ad~i~~~~~~~~~~~~~-~~~~~~~l~~----------~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSA  146 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKE-DESLADFLRK----------STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSA  146 (171)
T ss_dssp             TCSEEEEEEETTTCCCHH-HHHHHHHHHH----------HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBT
T ss_pred             cCcEEEEeeccccccccc-cccccccccc----------ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEec
Confidence            899999999987654332 2444455544          36799999999998642  2222222333333457799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy12922        159 KQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       159 ~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ++|.|+++++++|.+.+.+.
T Consensus       147 k~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhCCCC
Confidence            99999999999999988664

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.9e-25  Score=151.69  Aligned_cols=156  Identities=16%  Similarity=0.175  Sum_probs=111.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL   85 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   85 (184)
                      +++||+++|..|||||||+++|....++..+       .....+  ......+.+||++|++.+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-------~~~~~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-------IVETHF--TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-------EEEEEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-------EEEEEE--EeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4799999999999999999999876654332       122223  3334569999999999999999999999999999


Q ss_pred             EEeCCChhHH-----------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC---------------ccccH
Q psy12922         86 MYDVTNLESF-----------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ---------------RAVQT  139 (184)
Q Consensus        86 v~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~  139 (184)
                      |+|.++.+++           +....|...+..       ......|+++++||.|+...               .....
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~-------~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNN-------KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTY  144 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTC-------GGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcc-------cccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccH
Confidence            9999887654           223333333333       45778999999999996210               01111


Q ss_pred             HHH-----HHHHHh------cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        140 KDA-----QMLADN------YSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       140 ~~~-----~~~~~~------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ...     ..+...      ..+++++|||++|+||+++|+.+.+.+..
T Consensus       145 ~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         145 EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            111     112211      13457789999999999999999887754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=3.1e-24  Score=146.55  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------------cccch
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------------FRTLT   73 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------------~~~~~   73 (184)
                      .|+++|.||||||||+|+|++........++++.+...  +...+    +.++||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~--~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc--ccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999877665556655544332  22232    67899999421               11122


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHH----------HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHL----------NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ  143 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  143 (184)
                      ...++.+|++++|+|...+......          ...++.+..          .++|+++|+||+|+....+.......
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----------~~~p~iiv~NK~D~~~~~~~~~~~~~  145 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----------LDIPTIVAVNKLDKIKNVQEVINFLA  145 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----------TTCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----------cCCCEEEEEeeeehhhhHHHHHHHHH
Confidence            3445789999999999754332211          112233322          47899999999998653332222111


Q ss_pred             HHHH----hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        144 MLAD----NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       144 ~~~~----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      +...    .....++++||++|.|+++++++|.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         146 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            1110    112348899999999999999999988875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=9.9e-24  Score=140.98  Aligned_cols=149  Identities=18%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHhhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTAYY   77 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~   77 (184)
                      +||+++|.+|||||||+|+|++... .....+..+.......+...+.  .+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCe--eEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999998653 2334444444444444555554  48899999942110         1122345


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      ..+|++++|+|++++...+....+ ..+            ...|+++++||.|+.+...  ..+... ....+.+++++|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~------------~~~~~i~~~~k~d~~~~~~--~~~~~~-~~~~~~~~~~vS  142 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI------------KNKRYLVVINKVDVVEKIN--EEEIKN-KLGTDRHMVKIS  142 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH------------TTSSEEEEEEECSSCCCCC--HHHHHH-HHTCSTTEEEEE
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc------------ccccceeeeeeccccchhh--hHHHHH-HhCCCCcEEEEE
Confidence            789999999999987665443322 111            3578999999999976322  222222 223457899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy12922        158 CKQNINIDEAFLTLARL  174 (184)
Q Consensus       158 a~~~~gv~~~~~~l~~~  174 (184)
                      |++|.|+++++++|.++
T Consensus       143 A~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             GGGTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            99999999999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=1.9e-23  Score=147.21  Aligned_cols=160  Identities=21%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE----------------EeCCeeEEEEEEeCCCccccccch
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII----------------DLDDVPTKLQIWDTAGQERFRTLT   73 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~D~~G~~~~~~~~   73 (184)
                      |+|+|++++|||||+++|+............+........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998753321111111111001000                112223458999999999988887


Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--------------
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--------------  139 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------------  139 (184)
                      ...+..+|++++|+|+.++-.... ...+..+..          .++|+++|+||+|+........              
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----------~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~  156 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM----------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc----------CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHH
Confidence            778899999999999987543332 333444443          4789999999999864321110              


Q ss_pred             ------HHH----HHHHHh--------------cCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922        140 ------KDA----QMLADN--------------YSLPFYEVSCKQNINIDEAFLTLARLIREQTR  180 (184)
Q Consensus       140 ------~~~----~~~~~~--------------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~  180 (184)
                            ...    ..+...              ..++++++||++|.|++++++.|.....+..+
T Consensus       157 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                  000    111110              11468999999999999999998887766443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=4.5e-24  Score=146.03  Aligned_cols=159  Identities=13%  Similarity=0.174  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccchH---hhhcCCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLTT---AYYRGAM   81 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~---~~~~~~d   81 (184)
                      +|+|+|++|||||||+|+|++........++++.........+.+ ...+.+|||||...    ......   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            699999999999999999998765444444444444444443332 12488999999532    112222   2245678


Q ss_pred             EEEEEEeCCChhH---HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh--cCCCEEEe
Q psy12922         82 GILLMYDVTNLES---FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN--YSLPFYEV  156 (184)
Q Consensus        82 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~  156 (184)
                      .++++++....+.   .+....+........     ....++|+++|+||+|+.+..    .....+...  .+.+++.+
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~i  152 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYN-----LRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPI  152 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-----SSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhh-----hhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEE
Confidence            8888887764432   222222222222211     334578999999999987532    122333333  36789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy12922        157 SCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       157 Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      ||++|.|+++++++|.+.+.+
T Consensus       153 SA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         153 SAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHHHhhhh
Confidence            999999999999999888754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.2e-23  Score=142.62  Aligned_cols=159  Identities=18%  Similarity=0.196  Sum_probs=106.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM   86 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   86 (184)
                      .+||+++|.+|||||||++++.   +...+.||.+...  ..+...+  ..+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            4899999999999999999993   4445677776443  3344444  4599999999999999999999999999999


Q ss_pred             EeCCChh----------HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC----------------ccccHH
Q psy12922         87 YDVTNLE----------SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ----------------RAVQTK  140 (184)
Q Consensus        87 ~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~  140 (184)
                      +|.++..          .++....++..+...      ....++|+++++||+|+...                ......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~  148 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNN------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLR  148 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTC------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhC------hhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHH
Confidence            9998743          234444455554432      45678999999999997320                001111


Q ss_pred             HHHHHHH----h-------cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        141 DAQMLAD----N-------YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       141 ~~~~~~~----~-------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      ...++..    .       ..+.++++||+++.||+.+|+.+.+.+.+.
T Consensus       149 ~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         149 DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            2222111    1       124567899999999999999988776543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.89  E-value=2.4e-22  Score=138.46  Aligned_cols=163  Identities=16%  Similarity=0.173  Sum_probs=107.7

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCC---Cccccccc--eeEEEEEEEe-------------------CCeeEEEE
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY---DTYISTIG--IDFKQKIIDL-------------------DDVPTKLQ   59 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~~   59 (184)
                      .+..++|+++|+.++|||||+++|++....   .+.....+  ..+.......                   ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            456789999999999999999999864321   11111111  1111111110                   11234589


Q ss_pred             EEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-
Q psy12922         60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-  138 (184)
Q Consensus        60 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-  138 (184)
                      ++|+||+..|.......+..+|++++|+|+..+.........+..+...         ...++++++||+|+.+..... 
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---------~~~~iiv~inK~D~~d~~~~~~  152 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---------GQKNIIIAQNKIELVDKEKALE  152 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---------TCCCEEEEEECGGGSCHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---------cCccceeeeecccchhhHHHHH
Confidence            9999999999888877788999999999998764333334444444432         245688899999987633221 


Q ss_pred             -HHHHHHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        139 -TKDAQMLADNY---SLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       139 -~~~~~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                       .....++....   .++++++||++|+|++++++.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         153 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence             22233333332   36899999999999999999887754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=4.7e-22  Score=136.95  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCC--CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------------cc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------------TL   72 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------------~~   72 (184)
                      .+|+|+|.+|||||||+|+|++....  ....++.+.....  .....   .+.+.|++|.....             ..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc--ccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            48999999999999999999986532  2222222222222  22222   24556766632111             11


Q ss_pred             hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH--HHHH-HHHhc
Q psy12922         73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK--DAQM-LADNY  149 (184)
Q Consensus        73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~-~~~~~  149 (184)
                      .......+|++++++|++.+.. .....+++.+..          .++|+++|+||+|+.........  ...+ +....
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~----------~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~  167 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY----------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP  167 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred             hhccccchhhhhhhhhcccccc-cccccccccccc----------ccCcceechhhccccCHHHHHHHHHHHHHHhcccC
Confidence            1233456799999999986533 223344555554          46899999999998653332221  1112 11223


Q ss_pred             CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        150 SLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       150 ~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +.+++++||++|.|+++++++|.+.+
T Consensus       168 ~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         168 EDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.2e-21  Score=134.69  Aligned_cols=120  Identities=19%  Similarity=0.268  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-cchHhhhcCCcEEEEEE
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-TLTTAYYRGAMGILLMY   87 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~v~   87 (184)
                      +|+++|++|||||||+++|....+... .++.+.......+ ..+....+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999877544 3455444443332 24456679999999998775 46678889999999999


Q ss_pred             eCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         88 DVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        88 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      |+++... ..+...++..+.....    .....+|++||+||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~----~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSM----ALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHH----TSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHH----HhhcCCcEEEEEECcccCCC
Confidence            9998765 3444444433322110    33567899999999999763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=3e-21  Score=133.84  Aligned_cols=164  Identities=15%  Similarity=0.177  Sum_probs=104.2

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccc--eeEEEEEEEe------------------------CCe
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIG--IDFKQKIIDL------------------------DDV   54 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~--~~~~~~~~~~------------------------~~~   54 (184)
                      ....++|+++|+.++|||||+++|++.....   .......  ..........                        ...
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            3456899999999999999999998632210   0000000  0000000000                        111


Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      ...+.++|+||+..|.......+..+|++++|+|+.++-.....+..+..+..         ....|++|++||+|+...
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~---------~~i~~iIV~vNK~Dl~~~  155 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI---------IGVKNLIIVQNKVDVVSK  155 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---------TTCCCEEEEEECGGGSCH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH---------cCCceeeeccccCCCccc
Confidence            24689999999999988777778899999999999875322223333444433         134588999999999763


Q ss_pred             ccccH--HHHHHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        135 RAVQT--KDAQMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       135 ~~~~~--~~~~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      .+...  .....+....   +++++++||++|.|++++++.|.+.++
T Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         156 EEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            32211  1122222222   478999999999999999999887653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.87  E-value=1.2e-21  Score=134.60  Aligned_cols=158  Identities=13%  Similarity=0.060  Sum_probs=106.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC----------------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE----------------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   69 (184)
                      ..++|+++|+.++|||||+++|+..                ....+.....+.+.....+  ......+.++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~--~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY--STAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE--ECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEE--EeceeeEEeecCcchHHH
Confidence            3589999999999999999999741                1112222333333333333  333455899999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH---HHHHHHH
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT---KDAQMLA  146 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~  146 (184)
                      .......+..+|++++|+|+.++-.-+ -+..+..+..         ....|+++++||+|+....+...   .+...+.
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~---------~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l  149 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---------IGVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHH---------hcCCcEEEEEecccccccHHHHHHHHHHHHHHH
Confidence            888878889999999999999764322 2333444433         23568999999999865322111   1233333


Q ss_pred             Hhc-----CCCEEEeecCCC----------CCHHHHHHHHHHHH
Q psy12922        147 DNY-----SLPFYEVSCKQN----------INIDEAFLTLARLI  175 (184)
Q Consensus       147 ~~~-----~~~~~~~Sa~~~----------~gv~~~~~~l~~~~  175 (184)
                      ...     .++++++||++|          .|+.++++.+.+.+
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            333     367999999998          47888887776543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2.3e-21  Score=135.89  Aligned_cols=160  Identities=18%  Similarity=0.199  Sum_probs=112.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL   84 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   84 (184)
                      ++.+||+++|..|||||||++++....+    .||.+..  ...+..++  ..+++||++|++.+...|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            3568999999999999999999976543    4555533  33444555  45999999999999999999999999999


Q ss_pred             EEEeCCChh----------HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------------
Q psy12922         85 LMYDVTNLE----------SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------------  136 (184)
Q Consensus        85 ~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------------  136 (184)
                      +++|.++.+          .+.+...++..+...      ....++|++|++||+|+.+.+.                  
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~------~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~  149 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN------RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYT  149 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC------GGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcC------hhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccC
Confidence            999998532          233443434444332      4557899999999999832110                  


Q ss_pred             ------------ccHHHH-----HHHHHh--------cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        137 ------------VQTKDA-----QMLADN--------YSLPFYEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       137 ------------~~~~~~-----~~~~~~--------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                                  .....+     ..+...        ..+.++.+||.++.+++.+|+.+.+.+...
T Consensus       150 ~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         150 TPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                        001111     112111        124467899999999999999987777654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-20  Score=128.02  Aligned_cols=156  Identities=17%  Similarity=0.161  Sum_probs=102.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCc-cccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------cccchHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------FRTLTTAY   76 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~   76 (184)
                      --.|+|+|.+|||||||+|+|++...... ..+.++..............  +..+|++|...         ........
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhccccc
Confidence            34689999999999999999998765322 23333333333333344443  66678887432         11222233


Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEE
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYE  155 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~  155 (184)
                      ...+++++++.|..+..  .....+...+..          ...|.++|+||.|..............+....+ .++++
T Consensus        83 ~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----------~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWT--PDDEMVLNKLRE----------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP  150 (179)
T ss_dssp             CCCEEEEEEEEETTCCC--HHHHHHHHHHHS----------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             hhhcceeEEEEecCccc--hhHHHHHHHhhh----------ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEE
Confidence            45678888899887543  222333333332          467889999999987655444455556666666 58999


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q psy12922        156 VSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       156 ~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      +||++|.|+++++++|.+.+.
T Consensus       151 vSA~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         151 ISAETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             CCTTTTTTHHHHHHHHHTTCC
T ss_pred             EeCcCCCCHHHHHHHHHHhCC
Confidence            999999999999999987664

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=5.8e-20  Score=126.98  Aligned_cols=141  Identities=14%  Similarity=0.105  Sum_probs=93.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCc--------C---------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDET--------Y---------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER   68 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   68 (184)
                      ..++|+++|++++|||||+++|+...        .         ..+..+..+.+.....+..++.  .+.++||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~--~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCe--EEEEEeCCCchh
Confidence            46899999999999999999997310        0         1112223444445555555554  489999999999


Q ss_pred             cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHHHH
Q psy12922         69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDAQM  144 (184)
Q Consensus        69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~  144 (184)
                      |.......+..+|++++|+|+.++-..+..+ .+..+..          .++| +++++||+|+.+..+..   ...+..
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~----------~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~  148 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ----------VGVPYIVVFMNKVDMVDDPELLDLVEMEVRD  148 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHH----------TTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHH----------cCCCeEEEEEEecccCCCHHHHHHHHHHHHH
Confidence            9988888889999999999998765444333 3344443          3555 67789999986533221   122333


Q ss_pred             HHHhc-----CCCEEEeecC
Q psy12922        145 LADNY-----SLPFYEVSCK  159 (184)
Q Consensus       145 ~~~~~-----~~~~~~~Sa~  159 (184)
                      +....     .+++++.|+.
T Consensus       149 ~l~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         149 LLNQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHHHTTSCTTTSCEEECCHH
T ss_pred             HHHhcCCCcccceeeeeech
Confidence            33332     2568888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.81  E-value=4.8e-19  Score=123.60  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=97.7

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCcCC---------------------------------CccccccceeEEEEEE
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY---------------------------------DTYISTIGIDFKQKII   49 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~   49 (184)
                      +.+..+||+++|+.++|||||+.+|+.....                                 .+.....+.+......
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            4567799999999999999999999742110                                 0111112222222233


Q ss_pred             EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCC-CeEEEEEeC
Q psy12922         50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD-VVKVLAGNK  128 (184)
Q Consensus        50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK  128 (184)
                      ...  ...+.++|+||+..|......-+..+|++++|+|+..+-.-+. ...+..+..          .+ ..+++++||
T Consensus        85 ~~~--~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~----------~gv~~iiv~vNK  151 (222)
T d1zunb3          85 STA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL----------LGIKHIVVAINK  151 (222)
T ss_dssp             ECS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH----------TTCCEEEEEEEC
T ss_pred             ecc--ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHH----------cCCCEEEEEEEc
Confidence            233  3458999999999998888888899999999999987543332 233333333          34 458899999


Q ss_pred             CCCCCCccccH----HHHHHHHHhcC-----CCEEEeecCCCCCHH
Q psy12922        129 SDVKTQRAVQT----KDAQMLADNYS-----LPFYEVSCKQNINID  165 (184)
Q Consensus       129 ~D~~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~  165 (184)
                      +|+.+..+...    .++..+....+     ++|+++||++|.|+.
T Consensus       152 ~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         152 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            99976332211    22344444443     468999999999983

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.3e-18  Score=118.30  Aligned_cols=159  Identities=12%  Similarity=0.097  Sum_probs=84.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEE-eCCeeEEEEEEeCCC-ccccc-------cc--
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID-LDDVPTKLQIWDTAG-QERFR-------TL--   72 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G-~~~~~-------~~--   72 (184)
                      .++.++|+++|.+|||||||+|+|++...........+......... ..+..  ....+.++ .....       ..  
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR--LVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE--EEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccc--eeeeecccccchhhhhhhhhhhhhh
Confidence            46779999999999999999999998765333222222222222221 22221  22222222 11111       11  


Q ss_pred             -hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHHhc
Q psy12922         73 -TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLADNY  149 (184)
Q Consensus        73 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~  149 (184)
                       ........+.++.+.+....... ....+...+..          ...++++++||+|+........  ....+.....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh----------ccccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence             11222344555666666543322 22334444443          4678999999999876322221  1222222222


Q ss_pred             --CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        150 --SLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       150 --~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                        ..+++++||++|.|+++++++|.+.+
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence              34789999999999999999887653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.5e-19  Score=122.39  Aligned_cols=120  Identities=20%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhh----hcCCc
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY----YRGAM   81 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~~~d   81 (184)
                      ++.+|+++|+||||||||+|+|.+..+.    ++++.......+...+.  .+.+||+||+..+...+..+    ....+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGS--GVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGGS--SCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCCe--EEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            4679999999999999999999987653    34444444444434444  48999999988766554433    34568


Q ss_pred             EEEEEEeCCC-hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922         82 GILLMYDVTN-LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus        82 ~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      .+++++|..+ ..+++....|+..+.....   .....++|+++|+||+|+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITE---SSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHH---HHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHH---HHHhccCCeEEEEEeeccccc
Confidence            8999999774 3444555444432221100   035678999999999998653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1e-17  Score=117.99  Aligned_cols=150  Identities=15%  Similarity=0.075  Sum_probs=98.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhC--cC-----------------------------CCccccccceeEEEEEEEeC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDE--TY-----------------------------YDTYISTIGIDFKQKIIDLD   52 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~   52 (184)
                      ....++|+++|+.++|||||+.+|+..  ..                             ..+..+..+.+.....+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            345689999999999999999998631  10                             11222334444444455455


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHH------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAG  126 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (184)
                      +  +++.++|+||+..|......-+..+|++++|+|+..+..-      .+....+......         .-.++++++
T Consensus        83 ~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---------gv~~iiv~i  151 (239)
T d1f60a3          83 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---------GVRQLIVAV  151 (239)
T ss_dssp             S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---------TCCEEEEEE
T ss_pred             C--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---------CCCeEEEEE
Confidence            4  5699999999999998888888999999999999865211      1223333333331         234588899


Q ss_pred             eCCCCCCCcccc----HHHHHHHHHhcC-----CCEEEeecCCCCCH
Q psy12922        127 NKSDVKTQRAVQ----TKDAQMLADNYS-----LPFYEVSCKQNINI  164 (184)
Q Consensus       127 nK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv  164 (184)
                      ||+|+.+.....    ......+....+     ++++++|+..|.|+
T Consensus       152 NKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni  198 (239)
T d1f60a3         152 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM  198 (239)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence            999986532211    122333443333     67899999999886

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=1e-17  Score=117.26  Aligned_cols=149  Identities=15%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeCCe
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLDDV   54 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (184)
                      ..++|+++|+.++|||||+.+|+...-                               ..+.....+.......+..+  
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~--   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC--
Confidence            368999999999999999999863110                               01111222222233333333  


Q ss_pred             eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHH------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      .+.+.++|+||+..|.......++.+|++++|+|+.++...      ....+.+.....         ....++++++||
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---------~~~~~iIv~iNK  150 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---------MGLDQLIVAVNK  150 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---------TTCTTCEEEEEC
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---------hCCCceEEEEEc
Confidence            45699999999999999888889999999999999975321      122222333332         234578899999


Q ss_pred             CCCCCCc-ccc-H----HHHHHHHHhc-----CCCEEEeecCCCCCHH
Q psy12922        129 SDVKTQR-AVQ-T----KDAQMLADNY-----SLPFYEVSCKQNINID  165 (184)
Q Consensus       129 ~D~~~~~-~~~-~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~  165 (184)
                      +|+.... ... .    .....+....     .++++++||.+|.|+.
T Consensus       151 ~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         151 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            9986421 111 1    1223333333     3568999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.72  E-value=4.5e-17  Score=115.21  Aligned_cols=153  Identities=12%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcCC-------------------------------CccccccceeEEEEEEEeCC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-------------------------------DTYISTIGIDFKQKIIDLDD   53 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (184)
                      ...++|+++|+.++|||||+.+|+...-.                               .+..+..+.+.....+... 
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~-  100 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  100 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc-
Confidence            34679999999999999999999541110                               0011111111111222223 


Q ss_pred             eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHH------HHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ------HLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                       ...+.++|+||+..|.......+..+|++++|+|+..+..-.      .....+..+...         .-.++++++|
T Consensus       101 -~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---------~i~~iiv~iN  170 (245)
T d1r5ba3         101 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---------GINHLVVVIN  170 (245)
T ss_dssp             -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---------TCSSEEEEEE
T ss_pred             -cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---------CCCeEEEEEE
Confidence             345899999999999988888889999999999998653111      233333334331         2334789999


Q ss_pred             CCCCCCCc--cccH----HHHHHHHHhc-------CCCEEEeecCCCCCHHHHH
Q psy12922        128 KSDVKTQR--AVQT----KDAQMLADNY-------SLPFYEVSCKQNINIDEAF  168 (184)
Q Consensus       128 K~D~~~~~--~~~~----~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~~~  168 (184)
                      |+|+....  +...    .+...+..+.       .++++++||++|+|+.+++
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            99986421  1111    1122222221       2579999999999997654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=1.4e-16  Score=113.61  Aligned_cols=111  Identities=13%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc--CC----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET--YY----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      +|+++|+.++|||||+.+|+...  ..                .+.....+.......+...+.  .+.++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~--~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH--RVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE--EEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccccc--ceeEEccCchhhhh
Confidence            69999999999999999996421  10                001122333334444555555  48999999999999


Q ss_pred             cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      .-....++.+|++++|+|+.++-.......| ..+..          .++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~----------~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER----------LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----------TTCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh----------ccccccccccccccc
Confidence            8888889999999999999977554444444 34444          489999999999973

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=3.2e-16  Score=111.97  Aligned_cols=133  Identities=17%  Similarity=0.128  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC--cCC----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE--TYY----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF   69 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   69 (184)
                      -+|+++|+.++|||||+.+++..  ...                .+.....++......+.+.+.  .++++||||+..|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~--~~n~iDtPG~~dF   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDH--RINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTE--EEEEECCCSSSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCe--EEEEecCCchhhh
Confidence            37999999999999999999742  110                111112223333344444554  4999999999999


Q ss_pred             ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc
Q psy12922         70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY  149 (184)
Q Consensus        70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  149 (184)
                      ..-....++-+|+.++|+|+.++-.....+-| +....          .++|.++++||+|...  .....-..++...+
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~----------~~lP~i~fINKmDr~~--ad~~~~l~ei~~~l  151 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----------YKVPRIAFANKMDKTG--ADLWLVIRTMQERL  151 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT----------TTCCEEEEEECTTSTT--CCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH----------cCCCEEEEEecccccc--cccchhHHHHHHHh
Confidence            99999999999999999999987544444444 44443          5999999999999875  33344455566666


Q ss_pred             CCCEEE
Q psy12922        150 SLPFYE  155 (184)
Q Consensus       150 ~~~~~~  155 (184)
                      +...++
T Consensus       152 ~~~~vp  157 (276)
T d2bv3a2         152 GARPVV  157 (276)
T ss_dssp             CCCEEE
T ss_pred             CCCeEE
Confidence            655444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2e-15  Score=113.83  Aligned_cols=158  Identities=11%  Similarity=0.102  Sum_probs=92.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc-----ccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH-----h
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-----TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT-----A   75 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~-----~   75 (184)
                      .+++|+|+|.+|||||||+|+|.+.........     .++.+...  +...+.+ .+.+|||||.........     .
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~~~~-~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIP-NVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCT-TEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eeccCCC-eEEEEeCCCcccccccHHHHHHHh
Confidence            469999999999999999999998543222111     12222222  2222221 378999999654332222     2


Q ss_pred             hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-------CccccHH----HH--
Q psy12922         76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-------QRAVQTK----DA--  142 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~----~~--  142 (184)
                      .+..+|.++++.|..-.   +.....+..+..          .++|+++|.||+|...       .......    ..  
T Consensus       132 ~~~~~d~~l~~~~~~~~---~~d~~l~~~l~~----------~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~  198 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFK---KNDIDIAKAISM----------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL  198 (400)
T ss_dssp             TGGGCSEEEEEESSCCC---HHHHHHHHHHHH----------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCC---HHHHHHHHHHHH----------cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHH
Confidence            34567888888775422   222334455554          4789999999999621       1111111    11  


Q ss_pred             --HHHHHhcC---CCEEEeecCC--CCCHHHHHHHHHHHHHHHH
Q psy12922        143 --QMLADNYS---LPFYEVSCKQ--NINIDEAFLTLARLIREQT  179 (184)
Q Consensus       143 --~~~~~~~~---~~~~~~Sa~~--~~gv~~~~~~l~~~~~~~~  179 (184)
                        .......+   -+++.+|..+  ..|+..+.+++.+.+.+.+
T Consensus       199 ~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         199 NCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence              11122223   3578888764  4589999999888776543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=6.5e-15  Score=104.84  Aligned_cols=124  Identities=15%  Similarity=0.071  Sum_probs=76.3

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------hHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------TTAY   76 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~   76 (184)
                      ..+++|+++|.+|||||||+|++++... .....+.++...........+..  +.++||||.......       ...+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~--i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE--EEEEeeecccCCcchHHHHHHHHHHH
Confidence            4679999999999999999999998664 33333444445555555566654  899999995422111       1111


Q ss_pred             --hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         77 --YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        77 --~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                        ....+++++|++++...--......+..+....     ....-.++++|+||+|...+.
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~f-----g~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSF-----GKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHH-----CGGGGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHc-----chhhhhCEEEEEECcccCCcC
Confidence              235688899988875321111122222222210     112235789999999986543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=9.9e-16  Score=112.56  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=81.6

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhhCc--C--------------CCccccccceeEEEEEEEe--------------C
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCDET--Y--------------YDTYISTIGIDFKQKIIDL--------------D   52 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~   52 (184)
                      +.+.--+|+|+|+.++|||||+.+|+...  .              ..+..+..+.......+.+              +
T Consensus        13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence            33333359999999999999999997311  1              1111122222222222211              3


Q ss_pred             CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922         53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK  132 (184)
Q Consensus        53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (184)
                      +..+.+.++||||+..|.......++-+|++++|+|+.++-..+....|.....           .+.|.++|+||+|..
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~-----------~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-----------ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-----------TTCEEEEEEECHHHH
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH-----------cCCCeEEEEECcccc
Confidence            356779999999999999988888999999999999998765555555444333           478999999999973

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.60  E-value=6.5e-15  Score=107.73  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR  135 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (184)
                      +.+.+++|.|..+..   .....-+|..++|..+..++..+..+.-+.++-.               ++|+||+|+....
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~aD---------------i~vvNKaD~~~~~  205 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFELAD---------------MIAVNKADDGDGE  205 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHHHCS---------------EEEEECCSTTCCH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhhhhh---------------eeeEeccccccch
Confidence            457888988864322   3445669999999999998877666665555554               8999999987543


Q ss_pred             cccHHHHHHHHH----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922        136 AVQTKDAQMLAD----------NYSLPFYEVSCKQNINIDEAFLTLARLIRE  177 (184)
Q Consensus       136 ~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~  177 (184)
                      .........+..          .+..+++.+||++|.|+++++++|.+....
T Consensus       206 ~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         206 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            332222211111          134679999999999999999999776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5e-15  Score=108.46  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             EEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922         57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA  136 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (184)
                      .+.+++|.|..+.   ...+...+|.+++|.++..++..+..+..+.++..               ++|+||+|......
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aD---------------i~VvNKaD~~~~~~  209 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVAD---------------LIVINKDDGDNHTN  209 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHHCS---------------EEEECCCCTTCHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhcccc---------------EEEEEeecccchHH
Confidence            3556666664221   23455679999999999888777666666655544               89999999875222


Q ss_pred             ccH--HHHHHHHH-------hcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922        137 VQT--KDAQMLAD-------NYSLPFYEVSCKQNINIDEAFLTLARLIR  176 (184)
Q Consensus       137 ~~~--~~~~~~~~-------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~  176 (184)
                      ...  ........       .+..+++.|||.+|+|++++++.|.+...
T Consensus       210 ~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         210 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            111  11111111       22357999999999999999999876443

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.54  E-value=1.8e-15  Score=106.72  Aligned_cols=110  Identities=11%  Similarity=0.041  Sum_probs=65.8

Q ss_pred             EEEEEeCCCccccccchH---hhh--cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         57 KLQIWDTAGQERFRTLTT---AYY--RGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~~~---~~~--~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      .+.++|+||+..+.....   .+.  ...+.+++++|+..   +...............         ....|.++|+||
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~ivvinK  166 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---------RLGATTIPALNK  166 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---------HHTSCEEEEECC
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---------HhCCCceeeeec
Confidence            488899999876433221   121  24568889998763   3333222221122211         247899999999


Q ss_pred             CCCCCCccccHH--------------------------HHHHHHH--hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922        129 SDVKTQRAVQTK--------------------------DAQMLAD--NYSLPFYEVSCKQNINIDEAFLTLARLI  175 (184)
Q Consensus       129 ~D~~~~~~~~~~--------------------------~~~~~~~--~~~~~~~~~Sa~~~~gv~~~~~~l~~~~  175 (184)
                      +|+.........                          .......  ...++++++||++|+|+++++..|.+..
T Consensus       167 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         167 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            998652211110                          0000111  1247899999999999999999988764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.53  E-value=6.6e-14  Score=100.69  Aligned_cols=84  Identities=20%  Similarity=0.216  Sum_probs=58.4

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcc----
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQE----   67 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~----   67 (184)
                      .++|+++|.|+||||||+++++.........|+++.+.....+.+++.               +..+.++|.||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999998877777777776666665655432               2358899999942    


Q ss_pred             ccccc---hHhhhcCCcEEEEEEeCC
Q psy12922         68 RFRTL---TTAYYRGAMGILLMYDVT   90 (184)
Q Consensus        68 ~~~~~---~~~~~~~~d~~i~v~d~~   90 (184)
                      +...+   -...++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            22222   234468999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.1e-12  Score=95.11  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcc
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQE   67 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~   67 (184)
                      ....++|+++|.||||||||++++++... .....|++|.+.....+.+++.               ...+.+.|.||.-
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            34568999999999999999999998764 4566777777766666655542               2468999999843


Q ss_pred             cc----cc---chHhhhcCCcEEEEEEeCCC
Q psy12922         68 RF----RT---LTTAYYRGAMGILLMYDVTN   91 (184)
Q Consensus        68 ~~----~~---~~~~~~~~~d~~i~v~d~~~   91 (184)
                      ..    ..   --...++.+|+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            22    11   12344589999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=3.9e-12  Score=93.00  Aligned_cols=84  Identities=20%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEE----------------------eCCeeEEEEEEeCCC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID----------------------LDDVPTKLQIWDTAG   65 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~D~~G   65 (184)
                      ++|+++|.||||||||+|+|++........|++|.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999999877667777766543322110                      001235689999999


Q ss_pred             cccc----ccchH---hhhcCCcEEEEEEeCCC
Q psy12922         66 QERF----RTLTT---AYYRGAMGILLMYDVTN   91 (184)
Q Consensus        66 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~   91 (184)
                      .-..    ..+..   ..++.+|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4321    11222   23568999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=7.1e-11  Score=85.38  Aligned_cols=117  Identities=13%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEE------------------------------------
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKII------------------------------------   49 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------------------   49 (184)
                      ..+|+|+|..+||||||+|+|++.++ +....+++.........                                    
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            35799999999999999999999775 44333433221111100                                    


Q ss_pred             --------------EeCCeeEEEEEEeCCCcccc-------------ccchHhhhcCCc-EEEEEEeCCChhHHHHHHHH
Q psy12922         50 --------------DLDDVPTKLQIWDTAGQERF-------------RTLTTAYYRGAM-GILLMYDVTNLESFQHLNYW  101 (184)
Q Consensus        50 --------------~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~  101 (184)
                                    ..+. ...+.++|+||....             ......|+...+ ++++|.++..+.+......+
T Consensus       106 ~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                          0000 113789999994321             133455666666 45566666655444444555


Q ss_pred             HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922        102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ  134 (184)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (184)
                      ...+.          ....++++|+||+|..+.
T Consensus       185 ~~~~~----------~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEVD----------PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHC----------TTCSSEEEEEECGGGSCT
T ss_pred             HHHhC----------cCCCceeeEEeccccccc
Confidence            55443          345789999999998653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.15  E-value=9.9e-11  Score=84.92  Aligned_cols=25  Identities=20%  Similarity=0.537  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCcC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDETY   32 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~~   32 (184)
                      .+|+|+|..++|||||+|+|++.++
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            4799999999999999999998775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=2.3e-09  Score=76.33  Aligned_cols=57  Identities=21%  Similarity=0.390  Sum_probs=35.4

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ   66 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   66 (184)
                      ...++|+|+|.||||||||+|+|.+... .....|.+|.+...  +....   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--EECCC---CeEEecCCCc
Confidence            4579999999999999999999999654 44555555544332  22222   2899999994

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=3.8e-07  Score=62.62  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.+|.|..|||||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            3689999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=1.3e-07  Score=64.70  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             hhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH--hcCCC
Q psy12922         76 YYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD--NYSLP  152 (184)
Q Consensus        76 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~  152 (184)
                      ...+.|.+++|+++.+|+. ...+..++-....          .++|.+||+||+|+.+..+.  .....+..  ..+.+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----------~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~   74 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----------NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYP   74 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----------TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----------cCCCEEEEEeCcccCCHHHH--HHHHHhhccccccee
Confidence            3468899999999988764 4445555555554          58899999999999763222  22222222  23468


Q ss_pred             EEEeecCCCCCHHHHHHHH
Q psy12922        153 FYEVSCKQNINIDEAFLTL  171 (184)
Q Consensus       153 ~~~~Sa~~~~gv~~~~~~l  171 (184)
                      ++.+|++++.|++++.+.+
T Consensus        75 v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          75 IVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             EEECCTTTCTTHHHHHHHH
T ss_pred             EEEeccccchhHhhHHHHh
Confidence            8999999999999988766

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=1.9e-08  Score=68.99  Aligned_cols=59  Identities=15%  Similarity=0.130  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcCC------CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETYY------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      ..+++|.+|+|||||+|+|......      ........++.....+.+++.   ..++||||-+++.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            5689999999999999999864321      111112222223333444433   4689999976554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=4.6e-07  Score=61.60  Aligned_cols=141  Identities=17%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhCcCCCc-cc--------------------cccceeEEEEEEEeCC---------
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDT-YI--------------------STIGIDFKQKIIDLDD---------   53 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~--------------------~~~~~~~~~~~~~~~~---------   53 (184)
                      .+++.-|+++|++||||||.+-+|........ ..                    ...+..+...   .++         
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~---~~~~d~~~~~~~   84 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISH---SEGADPAAVAFD   84 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECC---STTCCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCcccccc---CCCCcHHHHHHH
Confidence            35667889999999999999877764211000 00                    0111111110   000         


Q ss_pred             -------eeEEEEEEeCCCccccccc----hHhhh---c-----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC
Q psy12922         54 -------VPTKLQIWDTAGQERFRTL----TTAYY---R-----GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ  114 (184)
Q Consensus        54 -------~~~~~~l~D~~G~~~~~~~----~~~~~---~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (184)
                             ..+.+.++||+|-..+...    ...+.   .     ..+-.++|+|++..  .+.+..........      
T Consensus        85 ~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~------  156 (213)
T d1vmaa2          85 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV------  156 (213)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS------
T ss_pred             HHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc------
Confidence                   1234899999994332211    11111   1     13568899998744  33333333333331      


Q ss_pred             CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922        115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       115 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                           .+-=+++||.|....    .=.+.......+.|+..++  +|.++++
T Consensus       157 -----~~~~lI~TKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         157 -----NVTGIILTKLDGTAK----GGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             -----CCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             -----CCceEEEecccCCCc----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence                 233589999996531    1234556777788887777  5766654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.50  E-value=5.3e-07  Score=59.36  Aligned_cols=23  Identities=35%  Similarity=0.732  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +||+++|++|||||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=2.1e-08  Score=68.98  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR   70 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   70 (184)
                      ..+++|.+|+|||||+|+|.....      .........++.....+..++    -.++||||-+++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g----g~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG----GLVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT----EEEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC----CEEEECCcccccc
Confidence            457999999999999999987532      111111111112222233444    3578999987654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.43  E-value=3.2e-07  Score=62.16  Aligned_cols=91  Identities=13%  Similarity=0.093  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCccccccc----hHhh---h-----cCCcEEEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeE
Q psy12922         56 TKLQIWDTAGQERFRTL----TTAY---Y-----RGAMGILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVK  122 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  122 (184)
                      +.+.++||+|...+...    ...+   .     ...+-.++|+|++.. +.......++..+.-              -
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~--------------~  154 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGL--------------T  154 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCC--------------S
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCC--------------c
Confidence            35899999995433221    1111   1     234678899998854 344555554444422              2


Q ss_pred             EEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922        123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       123 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      =+++||.|.....-    .+.......++|+..++  +|++.++
T Consensus       155 ~lI~TKlDet~~~G----~~l~~~~~~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         155 GVIVTKLDGTAKGG----VLIPIVRTLKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             EEEEECTTSSCCCT----THHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             eEEEeccCCCCCcc----HHHHHHHHHCCCEEEEe--CCCChHh
Confidence            58999999654211    23455667788877666  3555543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=2.8e-07  Score=62.52  Aligned_cols=90  Identities=14%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             EEEEEeCCCccccccc----h---Hhhhc-----CCcEEEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922         57 KLQIWDTAGQERFRTL----T---TAYYR-----GAMGILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKV  123 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~~----~---~~~~~-----~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  123 (184)
                      .+.++||+|-......    .   ....+     ..+-.++|+|++.. +.......++..+              .+-=
T Consensus        93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------------~~~~  158 (211)
T d2qy9a2          93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------------GLTG  158 (211)
T ss_dssp             SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------------CCCE
T ss_pred             CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------------CCce
Confidence            4899999994322211    1   11222     24578899998753 3333333333322              2336


Q ss_pred             EEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922        124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      +++||.|....    .=.+.......++|+..++  +|+++++
T Consensus       159 lIlTKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         159 ITLTKLDGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             EEEECCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             EEEeecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            89999996542    2234556777888887777  6776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=5e-07  Score=64.00  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922         74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF  153 (184)
Q Consensus        74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      ...+..+|++++|+|+..|-+...  ..+..+           ..++|.++|+||+|+.... .... ..+.....+...
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~-----------~~~Kp~IlVlNK~DLv~~~-~~~~-w~~~f~~~~~~~   74 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDI-----------LKNKPRIMLLNKADKADAA-VTQQ-WKEHFENQGIRS   74 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHH-----------CSSSCEEEEEECGGGSCHH-HHHH-HHHHHHTTTCCE
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHH-----------HcCCCeEEEEECccCCchH-HHHH-HHHHHHhcCCcc
Confidence            456789999999999998755322  122222           1367999999999998632 2222 233334556788


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTLARLIREQ  178 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l~~~~~~~  178 (184)
                      +.+|+.++.|...+...+.+.+.+.
T Consensus        75 i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          75 LSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             ceeecccCCCccccchhhhhhhhhh
Confidence            9999999999998888777766553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.36  E-value=3e-07  Score=62.42  Aligned_cols=90  Identities=14%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             EEEEEeCCCcccccc--c----hHhh--hcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922         57 KLQIWDTAGQERFRT--L----TTAY--YRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN  127 (184)
Q Consensus        57 ~~~l~D~~G~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (184)
                      .+.++||+|...+..  .    ...+  .-+.+-.++|+|++... ..+.....+..+             + +-=+++|
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~-------------~-~~~lI~T  161 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS-------------K-IGTIIIT  161 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC-------------T-TEEEEEE
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc-------------C-cceEEEe
Confidence            489999999543331  1    1111  12356788899887542 233333322211             1 1247799


Q ss_pred             CCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922        128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE  166 (184)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  166 (184)
                      |.|...    ..=.+.......++|+..++  +|+++++
T Consensus       162 KlDet~----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         162 KMDGTA----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             CTTSCS----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             cccCCC----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            999654    23345666778899987777  5777654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=3e-07  Score=63.08  Aligned_cols=85  Identities=13%  Similarity=0.140  Sum_probs=61.2

Q ss_pred             hcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHHhcCCCE
Q psy12922         77 YRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLADNYSLPF  153 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~  153 (184)
                      ..+.|.+++|+++.+|+. ...+..++-....          .+++.+||+||+|+....+..  ...........+.++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----------~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v   77 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----------NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV   77 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----------cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccc
Confidence            468899999999988754 4445555554443          688999999999997643322  122334455678999


Q ss_pred             EEeecCCCCCHHHHHHHH
Q psy12922        154 YEVSCKQNINIDEAFLTL  171 (184)
Q Consensus       154 ~~~Sa~~~~gv~~~~~~l  171 (184)
                      +.+|++++.|++++.+++
T Consensus        78 ~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          78 YLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             EECCHHHHTTCTTTGGGG
T ss_pred             eeeecCChhHHHHHHHhh
Confidence            999999999998876554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=1.2e-05  Score=54.30  Aligned_cols=84  Identities=19%  Similarity=0.160  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCccccccc----hHhh--hcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922         56 TKLQIWDTAGQERFRTL----TTAY--YRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK  128 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (184)
                      +.+.++||+|.......    +..+  ..+.+-.++|.|++.+.. .+....+.+.+.              +-=+++||
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~--------------~~~~I~TK  158 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG--------------VTGLVLTK  158 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC--------------CCEEEEEC
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC--------------CCeeEEee
Confidence            35899999995433221    1111  235678899999876532 333333222221              12489999


Q ss_pred             CCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922        129 SDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      .|...    ..-.+..+....+.|+..++
T Consensus       159 lDe~~----~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         159 LDGDA----RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             GGGCS----SCHHHHHHHHHHCCCEEEEC
T ss_pred             cCccc----cchHHHHHHHHHCCCEEEEe
Confidence            99543    22334566777788876664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.04  E-value=1.5e-06  Score=56.84  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=23.5

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..+.++|+++|+|||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            346789999999999999999999763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.00  E-value=1.3e-06  Score=57.52  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      =+|+|.|++|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.95  E-value=2e-06  Score=56.01  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|+++|+|||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.88  E-value=3.2e-06  Score=56.24  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++++|+|+|+|||||||+++.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.87  E-value=3.9e-06  Score=55.31  Aligned_cols=22  Identities=14%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=3.7e-06  Score=54.60  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -|+|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.85  E-value=4.4e-06  Score=55.58  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.+||+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999998875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.83  E-value=4.5e-06  Score=53.30  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+++|+|||||||++++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.83  E-value=6.2e-06  Score=55.00  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .++..|+|+|+|||||||+++.|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999999876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.82  E-value=5.2e-06  Score=54.83  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++|+|+|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.81  E-value=6.7e-06  Score=54.78  Aligned_cols=26  Identities=15%  Similarity=0.371  Sum_probs=23.1

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998863

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=5.5e-06  Score=54.66  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=6.2e-06  Score=54.29  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=7.1e-06  Score=54.12  Aligned_cols=24  Identities=13%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++|+|+|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999998763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.77  E-value=9.8e-06  Score=52.89  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=22.9

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +..+.+-|.++|.|||||||+.+.|..
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345668899999999999999988875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.71  E-value=9e-06  Score=52.73  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -|++.|+|||||||++++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998763

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.1e-05  Score=51.72  Aligned_cols=22  Identities=23%  Similarity=0.518  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998763

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.2e-05  Score=52.22  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=1.4e-05  Score=53.69  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=1.5e-05  Score=51.70  Aligned_cols=20  Identities=25%  Similarity=0.476  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.5e-05  Score=52.27  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ....-|+++|.|||||||+++++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999998865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-05  Score=52.63  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=2.1e-05  Score=52.11  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...++=|+|.|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999875

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.57  E-value=1.8e-05  Score=51.17  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.6e-05  Score=52.52  Aligned_cols=61  Identities=11%  Similarity=0.097  Sum_probs=38.0

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcCC--Cc-cccccceeEEEEEEEe-CCeeEEEEEEeCCCcc
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETYY--DT-YISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQE   67 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~   67 (184)
                      -.-|.|+|+.++|||+|+|.|.+....  .. .....+.......... .+....+.++||.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            346889999999999999999985531  11 1112222333322222 3344568899999953

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.6e-05  Score=52.36  Aligned_cols=21  Identities=24%  Similarity=0.532  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|+|++||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.3e-05  Score=54.12  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      +|+|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998743

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.4e-05  Score=50.69  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      =++++|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999998763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.2e-05  Score=51.26  Aligned_cols=21  Identities=29%  Similarity=0.686  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.51  E-value=2.5e-05  Score=51.13  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.49  E-value=2.8e-05  Score=50.48  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.49  E-value=6e-05  Score=54.26  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .+|+|.|++||||||++++|...-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.46  E-value=3.2e-05  Score=50.18  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999998774

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=4.7e-05  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +.--|+|+|+|||||||+.+.|...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.44  E-value=3.6e-05  Score=50.10  Aligned_cols=20  Identities=20%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.44  E-value=3.6e-05  Score=53.17  Aligned_cols=24  Identities=25%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      =.++|+|++|||||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999988743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=3.7e-05  Score=50.58  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.43  E-value=4.4e-05  Score=52.19  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47999999999999999888754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=3.9e-05  Score=52.51  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47999999999999999988743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.42  E-value=5.6e-05  Score=52.61  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +.+--|++.|+||+|||||++++...
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34456999999999999999998763

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.42  E-value=3.8e-05  Score=53.40  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999988743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4e-05  Score=53.18  Aligned_cols=23  Identities=13%  Similarity=0.211  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999988743

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=4.1e-05  Score=50.63  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=5e-05  Score=50.90  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|+.|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998744

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.40  E-value=4e-05  Score=50.93  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -|+|+|+|||||||++..|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999998763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.3e-05  Score=51.83  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..-|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=5.5e-05  Score=50.97  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +++-|+|.|++||||||+.+.|..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998854

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.37  E-value=4.9e-05  Score=50.50  Aligned_cols=29  Identities=28%  Similarity=0.483  Sum_probs=24.9

Q ss_pred             CCCCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          2 ADCNQTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++..+++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45667789999999999999999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.35  E-value=5.2e-05  Score=52.06  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35789999999999999998854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5.4e-05  Score=53.41  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++|+|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998743

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.33  E-value=6.1e-05  Score=50.95  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.+.|+|-|+|||||||..+.|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=7.6e-05  Score=51.22  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47999999999999999998854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.31  E-value=6.4e-05  Score=51.67  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47999999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=5.8e-05  Score=51.90  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46999999999999999998854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.29  E-value=5.3e-05  Score=51.71  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37999999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=7.1e-05  Score=49.66  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.25  E-value=4.3e-05  Score=53.10  Aligned_cols=23  Identities=17%  Similarity=0.197  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      =+++|+|++|||||||++.+.+-
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            36899999999999999988763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=9.2e-05  Score=50.72  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..-.+++.|+||+||||+++.+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=9.5e-05  Score=49.69  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      =|+|+||+|||||||++.|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.23  E-value=8.1e-05  Score=48.82  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=17.6

Q ss_pred             EEE-EEcCCCCchHHHHHHHhh
Q psy12922          9 KIL-VLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~-i~G~~~sGKSsli~~l~~   29 (184)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            555 579999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.23  E-value=0.0001  Score=50.77  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=6e-05  Score=51.66  Aligned_cols=22  Identities=18%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++++|+.|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999873

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=9e-05  Score=50.70  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...+++.|+||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346999999999999999998763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00012  Score=50.23  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998854

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=0.0001  Score=51.23  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00046  Score=44.08  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhCcC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDETY   32 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~~~   32 (184)
                      ..-|++-|.-|||||||++.+...--
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcc
Confidence            34688999999999999999987443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.14  E-value=7.1e-05  Score=51.46  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57999999999999999999854

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.00014  Score=50.40  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      ++++|+.|||||||++.+++..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=0.00019  Score=47.30  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++-|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.04  E-value=0.00023  Score=47.85  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++..-|.+.|.|||||||+.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567799999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.01  E-value=0.0002  Score=48.65  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0002  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      =|+|.|+|||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467789999999999998875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.96  E-value=0.00021  Score=51.07  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.|+++||||+|||.|++++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999998763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.95  E-value=0.00037  Score=48.04  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...|++.|+||+|||++++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999999876

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00025  Score=47.02  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +-+++++|+||+|||++++.|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            45899999999999999988775

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.92  E-value=0.00033  Score=48.38  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ..-.++|.|+||+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00036  Score=47.91  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -.+++.|+||+||||+++.+....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            469999999999999999998743

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00033  Score=49.85  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ...++-|+|.|++||||||+.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45678999999999999999888754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00032  Score=48.94  Aligned_cols=24  Identities=33%  Similarity=0.471  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +-+++++|+||+|||++++.|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            468999999999999999988763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00035  Score=47.89  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ...++++.|++|+||||+++.+...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3446999999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00037  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -.|++.|+||+|||++++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3599999999999999999986

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.00039  Score=46.30  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00039  Score=46.98  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4689999999999999998865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.73  E-value=0.0004  Score=48.02  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999998865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00053  Score=46.52  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999998764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00048  Score=47.73  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.+++.|+||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            34899999999999999999863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00048  Score=46.55  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .++++.|++|+||||+++.+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            36899999999999999998764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00053  Score=47.56  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -.|++.|+||+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35999999999999999998874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.61  E-value=0.00047  Score=47.84  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.00054  Score=51.25  Aligned_cols=23  Identities=39%  Similarity=0.639  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +-+|+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00084  Score=44.89  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +-|+|.|.+||||||+++.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            55889999999999999988654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.00068  Score=45.21  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.001  Score=46.70  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=20.6

Q ss_pred             CCceeEEEEEcCCCCchHHHHHHHh
Q psy12922          4 CNQTYKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         4 ~~~~~~i~i~G~~~sGKSsli~~l~   28 (184)
                      ...++=|+|.|.+|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456789999999999999987663

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00076  Score=45.06  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00081  Score=46.80  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -.|++.|++|+|||+|++++....
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            459999999999999999987743

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.36  E-value=0.055  Score=36.96  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCccccccc-hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCC
Q psy12922         56 TKLQIWDTAGQERFRTL-TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKT  133 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  133 (184)
                      +.+.++|+|+.-..... .......+|.++++... +..++.........+...      ....+.+ .-+|.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~------~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKY------AKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHH------BTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhh------ccccceeccceEEeeecCCC
Confidence            45888999864332222 22223457888877766 456666666666666553      1223333 347889988654


Q ss_pred             CccccHHHHHHHHHhcCCCEEE
Q psy12922        134 QRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      .    ......+....+.+++.
T Consensus       189 ~----~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         189 E----YELLDAFAKELGSQLIH  206 (269)
T ss_dssp             C----HHHHHHHHHHHTCCEEE
T ss_pred             c----cchhhhhHhhcCCeEEE
Confidence            3    23345566666766543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0015  Score=46.55  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             Ccee-EEEEEcCCCCchHHHHHHHhhC
Q psy12922          5 NQTY-KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         5 ~~~~-~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +++. .++++|++|+|||.|++.|...
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhh
Confidence            3334 6899999999999999998763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.31  E-value=0.0006  Score=48.99  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -+|++.|+||+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.29  E-value=0.00059  Score=47.94  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=16.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .=|+|.|.+||||||+.++|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999988753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0014  Score=42.61  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-|++.|++|+||||+.-.|...-
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999998887643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.24  E-value=0.0014  Score=42.60  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-|++.|++|+||||+...|...-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999998887643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0013  Score=44.04  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      |+|.|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998888755

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00087  Score=45.50  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=43.18  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhCc
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      +.|.|+||+|||+|+..+....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999998887643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0003  Score=46.38  Aligned_cols=19  Identities=21%  Similarity=0.420  Sum_probs=16.8

Q ss_pred             EEEcCCCCchHHHHHHHhh
Q psy12922         11 LVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        11 ~i~G~~~sGKSsli~~l~~   29 (184)
                      +|+|+.||||||++.++..
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5789999999999999863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.02  E-value=0.0038  Score=45.96  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|.|++||||||.+..+...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.0014  Score=46.20  Aligned_cols=18  Identities=22%  Similarity=0.455  Sum_probs=16.6

Q ss_pred             EEEcCCCCchHHHHHHHh
Q psy12922         11 LVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus        11 ~i~G~~~sGKSsli~~l~   28 (184)
                      +++|+.||||||+++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999999884

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0019  Score=43.88  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -|+|-|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999998763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.00  E-value=0.0019  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .--+++.|+||+|||+++..+..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.99  E-value=0.0018  Score=47.14  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-+++++||+|||||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            35699999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.99  E-value=0.0013  Score=48.32  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +-+++++|+||+|||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            45689999999999999976654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.98  E-value=0.0023  Score=41.27  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      .-|++.|++|+||||+.-.|....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            468999999999999998877643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.96  E-value=0.002  Score=46.22  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-++|.|=|.-||||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999998764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0022  Score=43.34  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -+.|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3689999999999999888654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.84  E-value=0.0029  Score=45.39  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-++|.|=|.-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3589999999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.73  E-value=0.0028  Score=43.04  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhCc
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDET   31 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~~   31 (184)
                      -++|.|+||+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999988876533

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0029  Score=46.32  Aligned_cols=20  Identities=15%  Similarity=0.496  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~   28 (184)
                      ++ +|+|+.|||||+++.++.
T Consensus        27 l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EE-EEECSTTSSHHHHHHHHH
T ss_pred             EE-EEECCCCCCHHHHHHHHH
Confidence            54 688999999999999984

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.61  E-value=0.0035  Score=43.70  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .-|.|.|..|+|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999988763

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.59  E-value=0.0033  Score=44.96  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -++|.|-|.-||||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            47899999999999999998865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.59  E-value=0.0035  Score=42.44  Aligned_cols=23  Identities=39%  Similarity=0.625  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhC
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      --++|.|+||+|||+|+..+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            34789999999999999887653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.0037  Score=41.81  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      =|+|-|..||||||+++.|..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.52  E-value=0.004  Score=41.67  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +.+.|++|+|||-|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998774

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.51  E-value=0.0038  Score=42.33  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.44  E-value=0.0046  Score=43.98  Aligned_cols=21  Identities=38%  Similarity=0.664  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0052  Score=41.73  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999998765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0053  Score=40.81  Aligned_cols=21  Identities=10%  Similarity=0.308  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.0063  Score=36.67  Aligned_cols=27  Identities=11%  Similarity=0.134  Sum_probs=23.7

Q ss_pred             CCCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          3 DCNQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         3 ~~~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      +..+.+.|.+-|.+|||||++.++|..
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHHH
Confidence            456779999999999999999999865

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0055  Score=41.50  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++|.|+||+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999888753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.13  E-value=0.0045  Score=40.92  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922          6 QTYKILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         6 ~~~~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      ++--+++.|++++|||.++..|..-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            4456899999999999999987763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0058  Score=45.07  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .-+++|+|.+|||||+++..+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35699999999999999877654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.03  E-value=0.0067  Score=40.83  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhC
Q psy12922          9 KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      -++|.|+||+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999998888653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.02  E-value=0.0084  Score=42.56  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             CCcee-EEEEEcCCCCchHHHHHHHhhC
Q psy12922          4 CNQTY-KILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus         4 ~~~~~-~i~i~G~~~sGKSsli~~l~~~   30 (184)
                      .+++. .++++|++|+|||.+.+.|...
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            34444 5688899999999999987753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.95  E-value=0.0073  Score=40.34  Aligned_cols=20  Identities=40%  Similarity=0.494  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q psy12922          9 KILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~   28 (184)
                      -+.|.|+||+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999987654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.78  E-value=0.0055  Score=42.83  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=13.2

Q ss_pred             EEEEcCCCCchHHHH
Q psy12922         10 ILVLGDSNVGKTCIV   24 (184)
Q Consensus        10 i~i~G~~~sGKSsli   24 (184)
                      ++|+|.|||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.76  E-value=0.0084  Score=41.40  Aligned_cols=20  Identities=30%  Similarity=0.415  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999877653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.60  E-value=0.0073  Score=42.53  Aligned_cols=16  Identities=25%  Similarity=0.588  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCchHHHH
Q psy12922          9 KILVLGDSNVGKTCIV   24 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli   24 (184)
                      .++|.|.+||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.28  E-value=0.02  Score=39.60  Aligned_cols=25  Identities=24%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .++--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4556788999999999999999876

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.014  Score=40.15  Aligned_cols=20  Identities=10%  Similarity=0.228  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      .+|.|.+|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999877653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.02  Score=39.92  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      =|++|+|.+|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            4789999999999999988765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.025  Score=40.81  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCchHHHHHHH
Q psy12922          9 KILVLGDSNVGKTCIVHRF   27 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l   27 (184)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3688999999999987543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.66  E-value=0.035  Score=37.75  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCchHHHHHHHhh
Q psy12922          7 TYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      ..-|+|.|++|+||+.+.+.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34689999999999999998865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.04  Score=37.90  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.|.|++++|||+|+-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57999999999999877665

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.28  E-value=0.049  Score=35.17  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhC
Q psy12922         10 ILVLGDSNVGKTCIVHRFCDE   30 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~~   30 (184)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.95  E-value=0.61  Score=30.48  Aligned_cols=65  Identities=6%  Similarity=-0.024  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCC
Q psy12922         56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKT  133 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~  133 (184)
                      +.+.++|+|+.-.  ......+..+|.++++...+ ..++.........+..          .+.|++ +|+|+.+...
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----------~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----------AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----------TTCEEEEEEEEEETSCT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh----------hhhhhhhhhhccccccc
Confidence            5688999987533  22344567799999999875 5566666666666654          356665 8899998654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.39  E-value=0.065  Score=32.99  Aligned_cols=19  Identities=26%  Similarity=0.522  Sum_probs=14.8

Q ss_pred             EEEcCCCCchHH-HHHHHhh
Q psy12922         11 LVLGDSNVGKTC-IVHRFCD   29 (184)
Q Consensus        11 ~i~G~~~sGKSs-li~~l~~   29 (184)
                      +++|+-.||||| |++++..
T Consensus         6 ~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHH
Confidence            568999999999 5666543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.26  E-value=0.063  Score=35.16  Aligned_cols=25  Identities=12%  Similarity=0.125  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922          5 NQTYKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         5 ~~~~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      .....+++.|++|+|||+++..+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998876

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.065  Score=36.10  Aligned_cols=19  Identities=16%  Similarity=0.366  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchHHHHHHHh
Q psy12922         10 ILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~   28 (184)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.19  E-value=0.073  Score=36.75  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy12922          9 KILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~~   29 (184)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            789999999999999877754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.79  E-value=0.075  Score=35.55  Aligned_cols=19  Identities=21%  Similarity=0.485  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchHHHHHHHh
Q psy12922         10 ILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~   28 (184)
                      ++|.|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.70  E-value=0.067  Score=32.40  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q psy12922          9 KILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l~   28 (184)
                      ..++.+++|||||.++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            34779999999999875544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.58  E-value=0.054  Score=38.03  Aligned_cols=14  Identities=36%  Similarity=0.541  Sum_probs=12.9

Q ss_pred             EEEcCCCCchHHHH
Q psy12922         11 LVLGDSNVGKTCIV   24 (184)
Q Consensus        11 ~i~G~~~sGKSsli   24 (184)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.98  E-value=0.061  Score=37.87  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=13.3

Q ss_pred             EEEEcCCCCchHHHH
Q psy12922         10 ILVLGDSNVGKTCIV   24 (184)
Q Consensus        10 i~i~G~~~sGKSsli   24 (184)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            389999999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.74  E-value=0.069  Score=37.65  Aligned_cols=14  Identities=36%  Similarity=0.541  Sum_probs=13.1

Q ss_pred             EEEcCCCCchHHHH
Q psy12922         11 LVLGDSNVGKTCIV   24 (184)
Q Consensus        11 ~i~G~~~sGKSsli   24 (184)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999987

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.62  E-value=0.14  Score=35.12  Aligned_cols=20  Identities=20%  Similarity=0.273  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.+.|++++|||+|+..+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            47899999999999987665

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.54  E-value=0.15  Score=35.06  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy12922         10 ILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus        10 i~i~G~~~sGKSsli~~l~~   29 (184)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999876654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.74  E-value=0.13  Score=35.58  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFCD   29 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~~   29 (184)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            4789999999999999766543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.22  Score=33.84  Aligned_cols=20  Identities=25%  Similarity=0.537  Sum_probs=14.3

Q ss_pred             eEE-EEEcCCCCchHHHHHHH
Q psy12922          8 YKI-LVLGDSNVGKTCIVHRF   27 (184)
Q Consensus         8 ~~i-~i~G~~~sGKSsli~~l   27 (184)
                      .+| ++.|..|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            344 45599999999985443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.96  E-value=0.24  Score=31.84  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=13.1

Q ss_pred             EEEEEcCCCCchHHH
Q psy12922          9 KILVLGDSNVGKTCI   23 (184)
Q Consensus         9 ~i~i~G~~~sGKSsl   23 (184)
                      ++++++++|+|||..
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=0.24  Score=33.88  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=25.0

Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-EEEEeCC
Q psy12922         81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-VLAGNKS  129 (184)
Q Consensus        81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~  129 (184)
                      ..+++|.... +-++.+....+..+...          ++|+ -+|+||.
T Consensus       199 t~~~lVt~pe-~~~~~~~~r~~~~l~~~----------gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARLQ-KSTLQEVARTHLELAAI----------GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEESC-HHHHHHHHHHHHHHHHH----------TCCCEEEEEEEE
T ss_pred             ceeeEecCcc-hhHHHHHHHHHHHHHhc----------CCCceEEEEcCC
Confidence            4566666553 56677777777777763          4444 5778996

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.89  E-value=0.26  Score=31.92  Aligned_cols=64  Identities=11%  Similarity=0.048  Sum_probs=35.9

Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922         80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus        80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                      .+.+++|.+..... ..........+..         ......-+|+|+.|...  .........+.+..+++++-
T Consensus       138 ~~~v~~V~~~~~~~-~~~~~~~~~~~~~---------~~~~~~gvv~N~~~~~~--~~~~~~~~~l~~~~gi~vlG  201 (224)
T d1byia_         138 QLPVILVVGVKLGC-INHAMLTAQVIQH---------AGLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLG  201 (224)
T ss_dssp             TCCEEEEEECSTTH-HHHHHHHHHHHHH---------TTCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEE
T ss_pred             cceeeEEEeeccch-hHHHHHHHHHHhc---------cCCccEEEEEeCcCCCc--hHHHHHHHHHHHHhCCCEEE
Confidence            34556666655433 3333333344433         24456688899988553  23334456677778888763

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.46  E-value=0.16  Score=35.06  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q psy12922          8 YKILVLGDSNVGKTCIVHRFC   28 (184)
Q Consensus         8 ~~i~i~G~~~sGKSsli~~l~   28 (184)
                      =|++|+|.+|+|||+|+..+.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHH
Confidence            368999999999999986543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.43  E-value=0.14  Score=30.51  Aligned_cols=17  Identities=18%  Similarity=0.034  Sum_probs=13.5

Q ss_pred             eeEEEEEcCCCCchHHH
Q psy12922          7 TYKILVLGDSNVGKTCI   23 (184)
Q Consensus         7 ~~~i~i~G~~~sGKSsl   23 (184)
                      .-++++.+++|||||..
T Consensus         7 ~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TCEEEECCCTTSSTTTT
T ss_pred             CCcEEEEcCCCCChhHH
Confidence            34678889999999944

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.64  E-value=4.2  Score=27.36  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccccccchHhh-hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-EEEEeCCCCCC
Q psy12922         56 TKLQIWDTAGQERFRTLTTAY-YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-VLAGNKSDVKT  133 (184)
Q Consensus        56 ~~~~l~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~  133 (184)
                      +.+.++|+|+.-......... ...++.++++... +..++.........+...      ....+.++ -+|.|+.+...
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~------~~~~~~~~~gvv~n~~~~~~  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKY------ANSGSVRLGGLICNSRNTDR  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHH------HTTSCCEEEEEEEECCCCTT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhh------hhcccccccceeehhhcchh
Confidence            557888987654322222222 2345666666544 455666665555555443      22344454 47889876432


Q ss_pred             CccccHHHHHHHHHhcCCCEEE
Q psy12922        134 QRAVQTKDAQMLADNYSLPFYE  155 (184)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~  155 (184)
                          .......++...+.+++.
T Consensus       192 ----~~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         192 ----EDELIIALANKLGTQMIH  209 (289)
T ss_dssp             ----HHHHHHHHHHHHTSCEEE
T ss_pred             ----hHHHHHHHHHHcCCeEEE
Confidence                122345566666766543

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.80  E-value=3.1  Score=25.93  Aligned_cols=55  Identities=18%  Similarity=0.091  Sum_probs=38.8

Q ss_pred             CChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922         90 TNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS  157 (184)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
                      ++..+++........+.         ...+.|+|+++......    .....+.+++.+.++|++.+.
T Consensus         3 sd~~~l~~~v~~~~~~l---------~~AkrPvIi~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFI---------ANRDKVAVLVGSKLRAA----GAEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHH---------TTCSCEEEEECTTTTTT----TCHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHH---------HcCCCEEEEECcCcccc----chHHHHHHHHHhhceeEEecc
Confidence            45566655544443333         35799999999998743    356778899999999988653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=83.23  E-value=3.3  Score=25.98  Aligned_cols=27  Identities=11%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             CCceeEEEEEcC-CCCchHHHHHHHhhCc
Q psy12922          4 CNQTYKILVLGD-SNVGKTCIVHRFCDET   31 (184)
Q Consensus         4 ~~~~~~i~i~G~-~~sGKSsli~~l~~~~   31 (184)
                      ..+.+||.|+|. .+.|-|.+. .|..+.
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l~~-~La~g~   48 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHLLF-KLASGE   48 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHH-HHHHTT
T ss_pred             cCCCcEEEEECCCcHHHHHHHH-HHHcCc
Confidence            356789999996 667765555 455444

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.74  E-value=0.14  Score=33.19  Aligned_cols=16  Identities=25%  Similarity=0.397  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCchHHHH
Q psy12922          9 KILVLGDSNVGKTCIV   24 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli   24 (184)
                      ++++.+++|+|||...
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            6899999999999753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.60  E-value=0.43  Score=32.66  Aligned_cols=19  Identities=16%  Similarity=0.475  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCchHHHHHHH
Q psy12922          9 KILVLGDSNVGKTCIVHRF   27 (184)
Q Consensus         9 ~i~i~G~~~sGKSsli~~l   27 (184)
                      +|+|-|..|+||||+.--|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5777899999999975443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.74  E-value=1.9  Score=26.41  Aligned_cols=21  Identities=14%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             ceeEEEEEcC-CCCchHHHHHH
Q psy12922          6 QTYKILVLGD-SNVGKTCIVHR   26 (184)
Q Consensus         6 ~~~~i~i~G~-~~sGKSsli~~   26 (184)
                      +++||.|+|. .++|.+....-
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l   23 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSI   23 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHH
T ss_pred             CceEEEEECCCCHHHHHHHHHH
Confidence            5789999995 78998866653

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.00  E-value=0.56  Score=28.30  Aligned_cols=43  Identities=9%  Similarity=0.078  Sum_probs=26.3

Q ss_pred             hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922         77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT  133 (184)
Q Consensus        77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (184)
                      +.+.|+  +.+|-  ..-+.++..+...+..          .++++++.+=..|-..
T Consensus        71 ~~~~d~--I~IDE--aQFf~dl~~~~~~~~~----------~~~~Viv~GLd~Df~~  113 (133)
T d1xbta1          71 ALGVAV--IGIDE--GQFFPDIVEFCEAMAN----------AGKTVIVAALDGTFQR  113 (133)
T ss_dssp             HHTCSE--EEESS--GGGCTTHHHHHHHHHH----------TTCEEEEECCSBCTTS
T ss_pred             hcccce--EEeeh--hHHHHHHHHHHHHHHh----------cCCcEEEEEecccccc
Confidence            445563  44443  2445556666655654          4788999888888644