Psyllid ID: psy12929

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MKNHIGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEEEEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEEccccEEEEEcccccccEEccccccccccEEEEEEccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHccccccccccccccccccccccccccEEEEEEcccEEEEEEEEcccEEEEEccccccccEEEcccccccEEEEEEEcccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mknhiggikkatsgsifygnACVGMILFIRLARRWPALVRDWQLVEtsmsrfgtprlgwRFTVMSSVLFSLAFVEHGlhnwlntrpggkddissmsmrggakvganfsidnsltfagagkppvglhldvlkEDKLVQKLMLDekkcylfgrnkdlcdicidhqscsrVHAAFVYHTALERAFLVDLgsilprelygvt
Flexible Loop (DISEMBL)
mknhiggikkatsgsifyGNACVGMILFIRLARRWPALVRDWQLvetsmsrfgtprlGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLvdlgsilprelygvt
Low Complexity Region (SEG)
MKNHIGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT
Disordered region (IsUnstruct)
*********KATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNT******************VGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELY***
Disordered Region (DISOPRED)
*******IKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWL**************************IDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV*
Disordered Region (DISEMBL)
MKNHIGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT
Disordered Region (DISPRO)
MKNHIGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMR*****GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSIL********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNHIGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q28147	351	Nuclear inhibitor of prot	yes	N/A	0.454	0.256	0.619	6e-27
Q12972	351	Nuclear inhibitor of prot	yes	N/A	0.454	0.256	0.619	6e-27
Q8R3G1	351	Nuclear inhibitor of prot	yes	N/A	0.358	0.202	0.746	9e-27
Q8W4D8	314	FHA domain-containing pro	no	N/A	0.363	0.229	0.345	1e-05
Q8TAD8	396	Smad nuclear-interacting	no	N/A	0.505	0.252	0.284	2e-05
Q54VU4	1505	Probable serine/threonine	no	N/A	0.181	0.023	0.555	3e-05
Q8BIZ6	383	Smad nuclear-interacting	no	N/A	0.297	0.154	0.328	7e-05
Q5M9G6	389	Smad nuclear interacting	no	N/A	0.404	0.205	0.287	8e-05
P83293	456	Putative gustatory recept	no	N/A	0.383	0.166	0.312	0.0001

>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8 PE=1 SV=1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 69/92 (75%), Gaps = 2/92 (2%)

Query: 97  MRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC 156
           M   A  G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN DLC
Sbjct: 1   MAAAANSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC 58

Query: 157 DICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
           D  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct: 59  DFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 90

Inhibitor subunit of the major nuclear protein phosphatase-1 (PP-1). It has RNA-binding activity but does not cleave RNA and may target PP-1 to RNA-associated substrates. May also be involved in pre-mRNA splicing. Binds DNA and might act as a transcriptional repressor. Seems to be required for cell proliferation.
Bos taurus (taxid: 9913)

>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 69/92 (75%), Gaps = 2/92 (2%)

Query: 97  MRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC 156
           M   A  G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN DLC
Sbjct: 1   MAAAANSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC 58

Query: 157 DICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
           D  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct: 59  DFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 90

Isoform Gamma is a site-specific single-strand endoribonuclease that cleaves single strand RNA 3' to purines and pyrimidines in A+U-rich regions. It generates 5'-phosphate termini at the site of cleavage. This isoform does not inhibit PP-1. May be implicated in mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: -

>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1

 Score =  120 bits (300), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 60/71 (84%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPP GLHLDV+K DKL++KL++DEKK YLFGRN DLCD  IDHQSCSRVHAA VYH  
Sbjct: 20  AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 79

Query: 178 LERAFLVDLGS 188
           L+R FL+DL S
Sbjct: 80  LKRVFLIDLNS 90

Inhibitor subunit of the major nuclear protein phosphatase-1 (PP-1). It has RNA-binding activity but does not cleave RNA and may target PP-1 to RNA-associated substrates. May also be involved in pre-mRNA splicing. Binds DNA and might act as a transcriptional repressor. Essential for cell proliferation and early embryonic development.

Mus musculus (taxid: 10090)

>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)

Query: 118 AGKPPVGLHLDVLKE-DKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT 176
           A KP     L V K+ + L + L L  + CYLFGR + + DI  DH SCS+ HA   Y  
Sbjct: 189 ARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQYRE 248

Query: 177 ALE-----------RAFLVDLGSI 189
             +           + +++DLGS 
Sbjct: 249 MEKEKPDGMMGKQVKPYIMDLGST 272

Involved in the microRNA (miRNA) and short interfering RNA (siRNA) biogenesis. May facilitate DCL1 to access or recognize primary miRNAs. Binds RNA non-specifically.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 30/130 (23%)

Query: 85  RPGGKDDISSMSMRGGAKVGANFSIDNSL-----TFAGA----GKPPVGL------HLDV 129
           RPGG +    +     AK   +F +  +L     TF G      +PP          L  
Sbjct: 208 RPGGNNKEKEVP----AKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYP 263

Query: 130 LKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVY----HTALE------ 179
            K D+++  + +  +  YL GR++ + DI IDH SCS+ HA F Y    +T  +      
Sbjct: 264 FKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRR 323

Query: 180 -RAFLVDLGS 188
            + +++DLGS
Sbjct: 324 VKPYIIDLGS 333

Down-regulates NF-kappa-B signaling by competing with RELA for CREBBP/EP300 binding. Involved in the microRNA (miRNA) biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q54VU4|Y8013_DICDI Probable serine/threonine-protein kinase DDB_G0280133 OS=Dictyostelium discoideum GN=DDB_G0280133 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 139  LMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVY 174
            + L  KK +LFGRN+D+ DI IDH SCS  HA  V+
Sbjct: 1391 IYLHRKKSFLFGRNRDIADIPIDHPSCSSQHAVIVF 1426

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 11/70 (15%)

Query: 130 LKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVY----HTALE------ 179
            K D+++  + +  +  YL GR++ + DI IDH SCS+ HA F Y    +T  +      
Sbjct: 251 FKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRR 310

Query: 180 -RAFLVDLGS 188
            + +++DLGS
Sbjct: 311 VKPYIIDLGS 320

Down-regulates NF-kappa-B signaling by competing with RELA for CREBBP/EP300 binding. Involved in the microRNA (miRNA) biogenesis.

Mus musculus (taxid: 10090)

>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 21/101 (20%)

Query: 109 IDNSLTFAGA----GKPPVGL------HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDI 158
           ++++ TF G      +PP          L   K D+++  + +  +  YL GR++ + DI
Sbjct: 224 LEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADI 283

Query: 159 CIDHQSCSRVHAAFVY----HTALE-------RAFLVDLGS 188
            IDH SCS+ HA F Y    +T  +       + +++DLGS
Sbjct: 284 PIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGS 324

Down-regulates NF-kappa-B signaling by competing with RELA for CREBBP/EP300 binding. Involved in the microRNA (miRNA) biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|P83293|GR64A_DROME Putative gustatory receptor 64a OS=Drosophila melanogaster GN=Gr64a PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 5   IGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSR--FGTPR--LGWR 60
           IG   K   G +F+G      ++FIRLA++WPA+VR W   E   ++  +  P+  L  R
Sbjct: 122 IGITAKNFVGLVFFGCVLSAYVVFIRLAKKWPAVVRIWTRTEIPFTKPPYEIPKRNLSRR 181

Query: 61  FTVMSSVLFSLAFVEHGLHN 80
             + +  +  L+  EH L+ 
Sbjct: 182 VQLAALAIIGLSLGEHALYQ 201

Probable role in the gustatory response.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
242010356	338	nuclear inhibitor of protein phosphatase	0.358	0.210	0.873	2e-29
193610474	342	PREDICTED: nuclear inhibitor of protein	0.358	0.207	0.845	7e-29
307186748	344	Nuclear inhibitor of protein phosphatase	0.358	0.206	0.830	2e-28
307198155	343	Nuclear inhibitor of protein phosphatase	0.358	0.206	0.830	3e-28
332018085	342	Nuclear inhibitor of protein phosphatase	0.358	0.207	0.830	3e-28
328783348	343	PREDICTED: nuclear inhibitor of protein	0.358	0.206	0.830	3e-28
380016302	343	PREDICTED: nuclear inhibitor of protein	0.358	0.206	0.830	3e-28
340725410	365	PREDICTED: nuclear inhibitor of protein	0.358	0.194	0.830	3e-28
383860924	343	PREDICTED: nuclear inhibitor of protein	0.358	0.206	0.830	3e-28
350403924	365	PREDICTED: nuclear inhibitor of protein	0.358	0.194	0.830	4e-28

>gi|242010356|ref|XP_002425934.1| nuclear inhibitor of protein phosphatase-1, putative [Pediculus humanus corporis] gi|212509917|gb|EEB13196.1| nuclear inhibitor of protein phosphatase-1, putative [Pediculus humanus corporis]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 63/71 (88%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLMLDEKKCYLFGRN  L D CIDHQSCSRVHAAFVYH  
Sbjct: 11  AGKPPVGLHLDVLKGDKLIQKLMLDEKKCYLFGRNPQLNDFCIDHQSCSRVHAAFVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193610474|ref|XP_001943542.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Acyrthosiphon pisum]

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 63/71 (88%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLMLD+KKCYLFGRN  + D CIDHQSCSRVHAAFVYH  
Sbjct: 11  AGKPPVGLHLDVLKGDKLIQKLMLDQKKCYLFGRNAQMSDFCIDHQSCSRVHAAFVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186748|gb|EFN72193.1| Nuclear inhibitor of protein phosphatase 1 [Camponotus floridanus]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 11  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198155|gb|EFN79176.1| Nuclear inhibitor of protein phosphatase 1 [Harpegnathos saltator]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 11  AGKPPVGLHLDVLKSDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018085|gb|EGI58699.1| Nuclear inhibitor of protein phosphatase 1 [Acromyrmex echinatior]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 11  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783348|ref|XP_003250277.1| PREDICTED: nuclear inhibitor of protein phosphatase 1 [Apis mellifera]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 11  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016302|ref|XP_003692126.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Apis florea]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 11  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725410|ref|XP_003401063.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Bombus terrestris]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 33  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 92

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 93  LNRAFLVDLGS 103

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860924|ref|XP_003705937.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Megachile rotundata]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 11  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 70

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 71  LNRAFLVDLGS 81

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403924|ref|XP_003486952.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Bombus impatiens]

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPPVGLHLDVLK DKL+QKLM+DEKKCYLFGRN+ L D CIDH SCSRVHAA VYH  
Sbjct: 33  AGKPPVGLHLDVLKNDKLIQKLMVDEKKCYLFGRNQQLNDFCIDHASCSRVHAALVYHKH 92

Query: 178 LERAFLVDLGS 188
           L RAFLVDLGS
Sbjct: 93  LNRAFLVDLGS 103

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
FB|FBgn0026402	383	NiPp1 "Nuclear inhibitor of Pr	0.358	0.185	0.774	1.2e-26
UNIPROTKB|A4FUE1	351	PPP1R8 "Protein phosphatase 1,	0.454	0.256	0.619	6.6e-26
UNIPROTKB|Q28147	351	PPP1R8 "Nuclear inhibitor of p	0.454	0.256	0.619	6.6e-26
UNIPROTKB|Q12972	351	PPP1R8 "Nuclear inhibitor of p	0.454	0.256	0.619	6.6e-26
UNIPROTKB|I3LFB1	350	PPP1R8 "Uncharacterized protei	0.454	0.257	0.619	6.6e-26
UNIPROTKB|F1N9I1	352	PPP1R8 "Uncharacterized protei	0.358	0.201	0.746	1.8e-25
MGI|MGI:2140494	351	Ppp1r8 "protein phosphatase 1,	0.358	0.202	0.746	1.8e-25
RGD|1306280	351	Ppp1r8 "protein phosphatase 1,	0.358	0.202	0.746	1.8e-25
ZFIN|ZDB-GENE-040426-1271	349	zgc:63827 "zgc:63827" [Danio r	0.358	0.203	0.746	1.8e-25
DICTYBASE|DDB_G0268618	268	pinA "Peptidyl-prolyl cis-tran	0.358	0.264	0.366	6.6e-08

FB|FBgn0026402 NiPp1 "Nuclear inhibitor of Protein phosphatase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 55/71 (77%), Positives = 61/71 (85%)

Query:   118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
             AGKPP GLHLDVLK+DKLVQKLM+DEK+CYLFGRN  + D CIDH SCSRVH+AFVYH  
Sbjct:    11 AGKPPTGLHLDVLKDDKLVQKLMVDEKRCYLFGRNSQMNDFCIDHASCSRVHSAFVYHKH 70

Query:   178 LERAFLVDLGS 188
             L  A+LVDLGS
Sbjct:    71 LNIAYLVDLGS 81

GO:0005634 "nucleus" evidence=ISS

GO:0004864 "protein phosphatase inhibitor activity" evidence=ISS;IMP;NAS

GO:0016607 "nuclear speck" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0004865 "protein serine/threonine phosphatase inhibitor activity" evidence=IDA

GO:0035308 "negative regulation of protein dephosphorylation" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0008157 "protein phosphatase 1 binding" evidence=IPI

UNIPROTKB|A4FUE1 PPP1R8 "Protein phosphatase 1, regulatory (Inhibitor) subunit 8" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query:    97 MRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC 156
             M   A  G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN DLC
Sbjct:     1 MAAAANSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC 58

Query:   157 DICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
             D  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct:    59 DFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 90

GO:0016607 "nuclear speck" evidence=IEA

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

UNIPROTKB|Q28147 PPP1R8 "Nuclear inhibitor of protein phosphatase 1" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query:    97 MRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC 156
             M   A  G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN DLC
Sbjct:     1 MAAAANSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC 58

Query:   157 DICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
             D  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct:    59 DFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 90

GO:0016607 "nuclear speck" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q12972 PPP1R8 "Nuclear inhibitor of protein phosphatase 1" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query:    97 MRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC 156
             M   A  G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN DLC
Sbjct:     1 MAAAANSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC 58

Query:   157 DICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
             D  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct:    59 DFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 90

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

GO:0004865 "protein serine/threonine phosphatase inhibitor activity" evidence=TAS

GO:0006401 "RNA catabolic process" evidence=TAS

GO:0008995 "ribonuclease E activity" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LFB1 PPP1R8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query:    97 MRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC 156
             M   A  G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN DLC
Sbjct:     1 MAAAANSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC 58

Query:   157 DICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
             D  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct:    59 DFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 90

GO:0016607 "nuclear speck" evidence=IEA

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

UNIPROTKB|F1N9I1 PPP1R8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 53/71 (74%), Positives = 60/71 (84%)

Query:   118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
             AGKPP GLHLDV+K DKL++KL++DEKK YLFGRN DLCD  IDHQSCSRVHAA VYH  
Sbjct:    20 AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 79

Query:   178 LERAFLVDLGS 188
             L+R FL+DL S
Sbjct:    80 LKRVFLIDLNS 90

GO:0008283 "cell proliferation" evidence=IEA

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

MGI|MGI:2140494 Ppp1r8 "protein phosphatase 1, regulatory (inhibitor) subunit 8" [Mus musculus (taxid:10090)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 53/71 (74%), Positives = 60/71 (84%)

Query:   118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
             AGKPP GLHLDV+K DKL++KL++DEKK YLFGRN DLCD  IDHQSCSRVHAA VYH  
Sbjct:    20 AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 79

Query:   178 LERAFLVDLGS 188
             L+R FL+DL S
Sbjct:    80 LKRVFLIDLNS 90

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0008380 "RNA splicing" evidence=IEA

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=IDA

GO:0016607 "nuclear speck" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IDA

RGD|1306280 Ppp1r8 "protein phosphatase 1, regulatory subunit 8" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 53/71 (74%), Positives = 60/71 (84%)

Query:   118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
             AGKPP GLHLDV+K DKL++KL++DEKK YLFGRN DLCD  IDHQSCSRVHAA VYH  
Sbjct:    20 AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 79

Query:   178 LERAFLVDLGS 188
             L+R FL+DL S
Sbjct:    80 LKRVFLIDLNS 90

GO:0005634 "nucleus" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=IEA;ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040426-1271 zgc:63827 "zgc:63827" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 53/71 (74%), Positives = 60/71 (84%)

Query:   118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
             AGKPP GLHLDV+K DKLV+KL++DEKK YLFGRN D+CD  IDHQSCSRVHAA VYH  
Sbjct:    18 AGKPPAGLHLDVVKGDKLVEKLIIDEKKFYLFGRNPDICDFTIDHQSCSRVHAALVYHRH 77

Query:   178 LERAFLVDLGS 188
             L+R FL+DL S
Sbjct:    78 LKRLFLIDLNS 88

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0268618 pinA "Peptidyl-prolyl cis-trans isomerase ESS1" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 26/71 (36%), Positives = 44/71 (61%)

Query:   118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
             A KP   ++L+++K    + ++ + + K  +FGR+ ++  + +DH S SR HAA VYH A
Sbjct:    29 ASKPISNVYLEIIKNGVNIDRVDISKDKFTVFGRSSEVASVLLDHPSVSRRHAALVYHGA 88

Query:   178 LERAFLVDLGS 188
               R +L+DL S
Sbjct:    89 NNRFYLIDLQS 99

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12972	PP1R8_HUMAN	3, ., 1, ., 4, ., -	0.6195	0.4545	0.2564	yes	N/A
Q28147	PP1R8_BOVIN	No assigned EC number	0.6195	0.4545	0.2564	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
cd00060	102	cd00060, FHA, Forkhead associated domain (FHA); fo	2e-13
pfam06151	414	pfam06151, Trehalose_recp, Trehalose receptor	1e-08
pfam00498	67	pfam00498, FHA, FHA domain	2e-07
smart00240	52	smart00240, FHA, Forkhead associated domain	6e-07

>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLV 184
             L VL  D   ++  LD    Y  GR+ D CDI +D  S SR HA   Y        L+
Sbjct: 2   PRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYD-GDGGVVLI 60

Query: 185 DLGS 188
           DLGS
Sbjct: 61  DLGS 64

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102

>gnl|CDD|218913 pfam06151, Trehalose_recp, Trehalose receptor

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 7   GIKKATSGSI-FYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFT--- 62
           G+   T  ++ FY +  +  ++F+RLAR+WP ++R W LVE    +        R     
Sbjct: 86  GLNFKTIVTLVFYVSCLLASLVFLRLARQWPHIMRTWALVEILFLKPPYRLGKRRLARRI 145

Query: 63  -VMSSVLFSLAFVEHGL 78
            +++ ++  LA VEH L
Sbjct: 146 NLVALIVLVLALVEHIL 162

In Drosophila, taste is perceived by gustatory neurons located in sensilla distributed on several different appendages throughout the body of the animal. This family represents the taste receptor sensitive to trehalose. Length = 414

>gnl|CDD|215951 pfam00498, FHA, FHA domain

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
              GR+ D CDI +D  S SR HA   Y     R +L DLGS
Sbjct: 1   VTIGRSPD-CDIVLDDPSVSRRHAEIRYDGGG-RFYLEDLGS 40

The FHA (Forkhead-associated) domain is a phosphopeptide binding motif. Length = 67

>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
              GR+ + CDI +D  S SR HA  VY     R +L+DLGS
Sbjct: 1   VTIGRSSEDCDIQLDGPSISRRHAVIVYD-GGGRFYLIDLGS 41

Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG1882|consensus	293		99.84
PF06151	414	Trehalose_recp: Trehalose receptor; InterPro: IPR0	99.77
KOG1881|consensus	793		99.65
PF00498	68	FHA: FHA domain; InterPro: IPR000253 The forkhead-	99.63
KOG1880|consensus	337		99.51
smart00240	52	FHA Forkhead associated domain. Found in eukaryoti	99.5
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.41
cd00060	102	FHA Forkhead associated domain (FHA); found in euk	99.41
COG1716	191	FOG: FHA domain [Signal transduction mechanisms]	99.24
TIGR03354	396	VI_FHA type VI secretion system FHA domain protein	99.2
COG3456	430	Predicted component of the type VI protein secreti	98.57
TIGR02500	410	type_III_yscD type III secretion apparatus protein	97.88
KOG0615|consensus	475		97.29
KOG0245|consensus	1221		80.63

>KOG1882|consensus

Probab=99.84  E-value=1.1e-21  Score=164.24  Aligned_cols=90  Identities=31%  Similarity=0.489  Sum_probs=82.3

Q ss_pred             cccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC----
Q psy12929        103 VGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL----  178 (198)
Q Consensus       103 ~~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~----  178 (198)
                      +.++|.+|+.     +..|...|+|++++++..+++.-++..++|++||+...+||.++||+||+|||+|||+...    
T Consensus       157 v~v~y~eppe-----arkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~  231 (293)
T KOG1882|consen  157 VVVKYNEPPE-----ARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRA  231 (293)
T ss_pred             EEEEecCCch-----hcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccC
Confidence            4678999999     9999999999999999988888899999999999987899999999999999999997532    


Q ss_pred             C-------eEEEEeCCCCCCeeecCc
Q psy12929        179 E-------RAFLVDLGSILPRELYGV  197 (198)
Q Consensus       179 ~-------~~~i~DL~StNGT~vNg~  197 (198)
                      +       ++||+||||+||||+|.+
T Consensus       232 dGt~grrvkpYiiDLgS~NgTfLNnk  257 (293)
T KOG1882|consen  232 DGTVGRRVKPYIIDLGSGNGTFLNNK  257 (293)
T ss_pred             CCccceeeeeEEEecCCCCcceecCc
Confidence            2       699999999999999975

>PF06151 Trehalose_recp: Trehalose receptor; InterPro: IPR009318 In Drosophila, taste is perceived by gustatory neurons located in sensilla distributed on several different appendages throughout the body of the animal

Probab=99.77  E-value=4.4e-19  Score=161.16  Aligned_cols=78  Identities=35%  Similarity=0.554  Sum_probs=74.2

Q ss_pred             cccccceeee-cceehhHHHHHHHHHHHHhhcChHHHHHHHHHhhhhcCCCCc----chhhHHHHHHHHHHHHHHHHHHh
Q psy12929          4 HIGGIKKATS-GSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTP----RLGWRFTVMSSVLFSLAFVEHGL   78 (198)
Q Consensus         4 ~~~gl~~~~~-~~~F~~~~~~~~~~F~~LAr~Wp~lm~~W~~~E~~~~~~~~~----~l~~ri~~~~~~~l~la~~EH~l   78 (198)
                      ...|+++.++ +++||++|++++++|++|||+||+||++|+++|+.|++++|+    +|++|++++++++|++|++||+|
T Consensus        83 ~~~gl~~~~~~~liFy~~~~~~~i~Fl~LAr~Wp~lm~~W~~vE~~f~~~~y~~~~~~L~~ki~~i~~~il~lAlvEH~L  162 (414)
T PF06151_consen   83 FRSGLNFNNIASLIFYVVCLLISILFLRLARRWPQLMREWSRVEQIFLSYPYRKGRRSLKRKIRLIAFVILLLALVEHLL  162 (414)
T ss_pred             HhcCccceehhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCccchhhchhhhHHHHHHHHHHHHHHHHHH
Confidence            4679999988 999999999999999999999999999999999999999886    59999999999999999999999


Q ss_pred             hhh
Q psy12929         79 HNW   81 (198)
Q Consensus        79 ~~~   81 (198)
                      ++.
T Consensus       163 s~~  165 (414)
T PF06151_consen  163 SII  165 (414)
T ss_pred             HHH
Confidence            987

This family represents the taste receptor sensitive to trehalose [,].

>KOG1881|consensus

Probab=99.65  E-value=2.6e-16  Score=148.03  Aligned_cols=89  Identities=31%  Similarity=0.472  Sum_probs=80.9

Q ss_pred             ccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC-----
Q psy12929        104 GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-----  178 (198)
Q Consensus       104 ~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-----  178 (198)
                      ...|..|+|     +++|...+.|+++|.|..+++.+|.....++|||.+ .||+.+.||+|||.||++|+...+     
T Consensus       141 ~~py~vppw-----~~P~~~~~~lEvlKeg~iiet~~l~~~~~~~fgr~~-~cD~~~eHpsISr~h~vlQy~~~~~~~p~  214 (793)
T KOG1881|consen  141 AAPYEVPPW-----SGPPAAIFQLEVLKEGAIIETEDLKGAAACLFGRLG-GCDVALEHPSISRFHAVLQYKASGPDDPC  214 (793)
T ss_pred             CCcccCCCC-----CCCcccchhhhhhccCceeeeeecccceeEEecccC-CCccccccCcccccceeeeccCCCCCccc
Confidence            446999999     889999999999999999999999988999999998 999999999999999999997532     


Q ss_pred             ----CeEEEEeCCCCCCeeecCcC
Q psy12929        179 ----ERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       179 ----~~~~i~DL~StNGT~vNg~~  198 (198)
                          .+|||.|||||||||+|..+
T Consensus       215 ~s~~~g~~i~dlgsThgt~~NK~r  238 (793)
T KOG1881|consen  215 ASNGEGWYIYDLGSTHGTFLNKDR  238 (793)
T ss_pred             cCCCCceEEeeccccccceecccc
Confidence                24999999999999999764

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins

Probab=99.63  E-value=5.8e-16  Score=106.15  Aligned_cols=50  Identities=30%  Similarity=0.414  Sum_probs=44.6

Q ss_pred             EEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       147 ~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      |+|||++ .||+++++++|||+||.|.++. ++.++|+|++|+|||||||++
T Consensus         1 ~~iGR~~-~~di~l~~~~iSr~Ha~i~~~~-~~~~~i~d~~s~ngt~vng~~   50 (68)
T PF00498_consen    1 VTIGRSP-DCDIVLPDPSISRRHARISFDD-DGQFYIEDLGSTNGTFVNGQR   50 (68)
T ss_dssp             EEEESST-TSSEEETSTTSSTTSEEEEEET-TEEEEEEESSSSS-EEETTEE
T ss_pred             CEEcCCC-CCCEEECCHheeeeeeEEEEec-eeeEEEEeCCCCCcEEECCEE
Confidence            6899996 8999999999999999999985 238999999999999999964

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....

>KOG1880|consensus

Probab=99.51  E-value=3.7e-15  Score=128.39  Aligned_cols=89  Identities=60%  Similarity=0.960  Sum_probs=76.8

Q ss_pred             ccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEE
Q psy12929        104 GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL  183 (198)
Q Consensus       104 ~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i  183 (198)
                      +.+|..|.|     |.+|..+.+|.+.+++..+....++.+++|+|||..+.||++++|.+|||+||.+.++.....+++
T Consensus         2 ~s~~~~p~w-----A~kpp~g~hldv~k~d~li~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~l   76 (337)
T KOG1880|consen    2 QSNFDPPSW-----AGKPPAGLHLDVVKGDKLIQKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFL   76 (337)
T ss_pred             CCcCCCCCc-----ccCCCCCCceeeeecchhHHHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEE
Confidence            356899999     899999888999888776666666677789999999899999999999999999999875556999


Q ss_pred             EeCCCCCCeeecCc
Q psy12929        184 VDLGSILPRELYGV  197 (198)
Q Consensus       184 ~DL~StNGT~vNg~  197 (198)
                      +||||++|||+...
T Consensus        77 idl~s~hgtf~g~~   90 (337)
T KOG1880|consen   77 IDLGSTHGTFLGNE   90 (337)
T ss_pred             EEccCCcceeeeee
Confidence            99999999998643

>smart00240 FHA Forkhead associated domain

Probab=99.50  E-value=2.9e-14  Score=92.47  Aligned_cols=51  Identities=37%  Similarity=0.501  Sum_probs=45.4

Q ss_pred             EEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       147 ~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ++|||++..||++++++.|||.||.|.++. ++.++|.|++|+|||||||++
T Consensus         1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~-~~~~~i~d~~s~~gt~vng~~   51 (52)
T smart00240        1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDG-GGRFYLIDLGSTNGTFVNGKR   51 (52)
T ss_pred             CEeCCCCCCCCEEeCCCCcchhHcEEEECC-CCeEEEEECCCCCCeeECCEE
Confidence            478999757999999999999999999975 335999999999999999974

Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.41  E-value=3.3e-13  Score=129.06  Aligned_cols=76  Identities=24%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             CCCCceEEEEEeCCce-eeEEEe--cCcceEEeccCCCCcce-----EeCCCCcCccceEEEEEccCCeEEEEeCCCCCC
Q psy12929        120 KPPVGLHLDVLKEDKL-VQKLML--DEKKCYLFGRNKDLCDI-----CIDHQSCSRVHAAFVYHTALERAFLVDLGSILP  191 (198)
Q Consensus       120 ~p~~~~~L~v~~~~~~-~~~~~l--~~~~~~~iGR~~~~~di-----~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNG  191 (198)
                      .....|.|.+..++.. .+.+.|  +++.+++|||.+ +||+     +|++|.||++||+|.++  ++.+||+||+||||
T Consensus       529 ~~~~~w~l~~~~~~~~~~~~~~l~~~~~~p~~iG~~~-~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~~~~~Dl~S~nG  605 (668)
T PLN02927        529 TIKGEWYLIPHGDDCCVSETLCLTKDEDQPCIVGSEP-DQDFPGMRIVIPSSQVSKMHARVIYK--DGAFFLMDLRSEHG  605 (668)
T ss_pred             hhcCCeEEEecCCCCcccceeeeecCCCCCeEecCCC-CcCCCCceEEecCCccChhHeEEEEE--CCEEEEEECCCCCc
Confidence            3445699988755443 466887  334469999998 8985     99999999999999998  58999999999999


Q ss_pred             eeecCcC
Q psy12929        192 RELYGVT  198 (198)
Q Consensus       192 T~vNg~~  198 (198)
                      |||||.+
T Consensus       606 T~v~~~~  612 (668)
T PLN02927        606 TYVTDNE  612 (668)
T ss_pred             cEEeCCC
Confidence            9998763

>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins

Probab=99.41  E-value=1.4e-12  Score=94.56  Aligned_cols=72  Identities=33%  Similarity=0.385  Sum_probs=60.9

Q ss_pred             eEEEEEeCCceeeEEEecCcceEEeccCCCCc-ceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC-DICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~-di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      |.|.+..++.....+.|..+..++|||++ .| |+.++++.|||.||.|.++. ++.+++.|+.|+|||+|||++
T Consensus         2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~~-~~~~i~l~~~~iS~~H~~i~~~~-~~~~~~~~~~s~~g~~vn~~~   74 (102)
T cd00060           2 PRLVVLSGDASGRRYYLDPGGTYTIGRDS-DNCDIVLDDPSVSRRHAVIRYDG-DGGVVLIDLGSTNGTFVNGQR   74 (102)
T ss_pred             eEEEEecCCCceeEEEECCCCeEEECcCC-CcCCEEcCCCCeeCcceEEEEcC-CCCEEEEECCCCCCeEECCEE
Confidence            45767766555678899774669999998 67 99999999999999999984 368999999999999999963

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).

>COG1716 FOG: FHA domain [Signal transduction mechanisms]

Probab=99.24  E-value=1.1e-11  Score=100.14  Aligned_cols=51  Identities=31%  Similarity=0.372  Sum_probs=46.8

Q ss_pred             ceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        145 KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       145 ~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..+.+||++ .+|++++++.|||+||.+.++.  +.++++|++|+|||||||.+
T Consensus        89 ~~~tigr~~-~~~i~~~~~~vSR~Ha~l~~~~--~~~~~~d~~S~nGt~vn~~~  139 (191)
T COG1716          89 PVTTIGRDP-DNDIVLDDDVVSRRHAELRREG--NEVFLEDLGSTNGTYVNGEK  139 (191)
T ss_pred             ceEEeccCC-CCCEEcCCCccccceEEEEEeC--CceEEEECCCCcceEECCeE
Confidence            469999987 8999999999999999999974  78999999999999999964

>TIGR03354 VI_FHA type VI secretion system FHA domain protein

Probab=99.20  E-value=5.8e-11  Score=107.69  Aligned_cols=55  Identities=24%  Similarity=0.230  Sum_probs=49.2

Q ss_pred             eeEEEecCcceEEeccCCCCcceEeCCCC--cCccceEEEEEccCCeEEEEeCCCCCCeeec
Q psy12929        136 VQKLMLDEKKCYLFGRNKDLCDICIDHQS--CSRVHAAFVYHTALERAFLVDLGSILPRELY  195 (198)
Q Consensus       136 ~~~~~l~~~~~~~iGR~~~~~di~l~~~~--vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vN  195 (198)
                      ...+.+.... ++|||++ .||++++++.  ||++||+|+++  ++.++|+|+ |+||||||
T Consensus        16 ~~~~~f~~~~-~~IGR~~-~~d~~l~d~~~~VS~~Ha~I~~~--~g~~~l~Dl-StNGT~VN   72 (396)
T TIGR03354        16 AAQKTFGTNG-GTIGRSE-DCDWVLPDPERHVSGRHARIRYR--DGAYLLTDL-STNGVFLN   72 (396)
T ss_pred             ceEEEECCCC-EEEecCC-CCCEEeCCCCCCcchhhcEEEEE--CCEEEEEEC-CCCCeEEC
Confidence            3578886555 8999998 8999999999  99999999997  479999999 99999999

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.

>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.57  E-value=5.8e-08  Score=87.70  Aligned_cols=55  Identities=25%  Similarity=0.283  Sum_probs=46.9

Q ss_pred             EEEecCcceEEeccCCCCcceEeCCCC--cCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        138 KLMLDEKKCYLFGRNKDLCDICIDHQS--CSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       138 ~~~l~~~~~~~iGR~~~~~di~l~~~~--vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ...++++. ..|||++ +||..|+||.  ||++||.|.++  ++.|||.|. |.|||+|||.
T Consensus        20 q~~f~~~~-g~IGrs~-dcdW~i~D~~~~VS~~Hc~I~~~--dg~f~L~Dt-S~g~l~VNgs   76 (430)
T COG3456          20 QKLFDRGG-GVIGRSP-DCDWQIDDPERFVSKQHCTISYR--DGGFCLTDT-SNGGLLVNGS   76 (430)
T ss_pred             hhhhhcCC-cccccCC-CCCccccCcccccchhheEEEec--CCeEEEEec-CCCceeeccc
Confidence            34454444 7999998 8999999875  99999999998  589999999 7999999985

>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family

Probab=97.88  E-value=3.9e-05  Score=70.03  Aligned_cols=66  Identities=24%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             eEEEEEeCCceeeEEEecCcceEEec-cCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecC
Q psy12929        125 LHLDVLKEDKLVQKLMLDEKKCYLFG-RNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYG  196 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~~~~~iG-R~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg  196 (198)
                      |.|.++.|...+..+.|.... ++|| +++ +||++|.|+.+|++|+.|+.+.  +++.+.|  +..+.++||
T Consensus         1 ~~lrvl~G~~~G~~~~L~~g~-~~iG~~~~-~~di~L~d~~~~~~h~~l~v~~--~~~~l~~--~~~~~~~~g   67 (410)
T TIGR02500         1 WKLRVLSGPHRGAELPLPEGN-LVLGTDAA-DCDIVLSDGGIAAVHVSLHVRL--EGVTLAG--AVEPAWEEG   67 (410)
T ss_pred             CEEEEecCCCCCcEEECCCCc-eEeccCCC-CcEEEeCCCCccchheEEEEcC--ceEEEec--CCcceeECC
Confidence            578888888888999998776 9999 776 9999999999999999999974  5676664  566777777

This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.

>KOG0615|consensus

Probab=97.29  E-value=0.00025  Score=64.69  Aligned_cols=58  Identities=21%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEc-------------cCCeEEEEeCCCCCCeeecCc
Q psy12929        137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT-------------ALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~-------------~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ..+++.. ..|++||++ .||.++..+.+|..|..|....             +...+|+.|. |+||||||.+
T Consensus        57 ~~~d~~n-d~f~fGR~~-~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e  127 (475)
T KOG0615|consen   57 KSIDLAN-DEFTFGRGD-SCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDE  127 (475)
T ss_pred             ccceecc-ceEEecCCC-cccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHh
Confidence            4567744 459999997 8999999999999998876541             1236999998 9999999975

>KOG0245|consensus

Probab=80.63  E-value=3.5  Score=42.02  Aligned_cols=57  Identities=14%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             EEecCcceEEeccCC--CCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        139 LMLDEKKCYLFGRNK--DLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       139 ~~l~~~~~~~iGR~~--~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      +.|+++. ..|||.+  ...||+|..+.|--+||.|.... +++++..-.-----|||||+
T Consensus       472 Y~ikeG~-TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~-g~~~vtl~p~e~aetyVNGk  530 (1221)
T KOG0245|consen  472 YYIKEGE-TRVGREDASSRQDIVLSGQLIREQHCSIRNEG-GNDVVTLEPCEDAETYVNGK  530 (1221)
T ss_pred             EEeccCc-eecCCCCcccCCceEecchhhhhhceEEEecC-CCceEEeccCCccceeEccE
Confidence            4454433 6889863  23699999999999999998764 33445544434445999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2jpe_A	140	Fha Domain Of Nipp1 Length = 140		1e-27
3vpy_A	145	Crystal Structure Of Arabidopsis Ddl Fha Domain Len		3e-06

>pdb|2JPE|A Chain A, Fha Domain Of Nipp1 Length = 140

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 93  SSMSMRGGAKVGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRN 152
           S  SM      G++  + +  T+AG  KPP GLHLDV+K DKL++KL++DEKK YLFGRN
Sbjct: 5   SPNSMAAAVNSGSSLPLFDCPTWAG--KPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRN 62
Query: 153 KDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
            DLCD  IDHQSCSRVHAA VYH  L+R FL+DL S
Sbjct: 63  PDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNS 98

>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain Length = 145

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 118 AGKPPVGLHLDVLKE-DKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT 176
           A KP     L V K+ + L + L L  + CYLFGR + + DI  DH SCS+ HA   Y  
Sbjct: 10  ARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQYRE 69
Query: 177 ALE-----------RAFLVDLGS 188
             +           + ++ DLGS
Sbjct: 70  XEKEKPDGXXGKQVKPYIXDLGS 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2jpe_A	140	Nuclear inhibitor of protein phosphatase 1; FHA do	6e-25
3elv_A	205	PRE-mRNA leakage protein 1; intrinsically unstruct	3e-11
3gqs_A	106	Adenylate cyclase-like protein; FHA domain, struct	4e-11
3els_A	158	PRE-mRNA leakage protein 1; intrinsically unstruct	1e-10
3va4_A	132	Mediator of DNA damage checkpoint protein 1; cell	2e-10
1uht_A	118	Expressed protein; FHA domain, beta-sandwich, anti	3e-08
1r21_A	128	Antigen KI-67; beta sandwich, cell cycle; NMR {Hom	1e-07
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-07
2kfu_A	162	RV1827 PThr 22; FHA domain, phosphorylation, intra	3e-07
2jqj_A	151	DNA damage response protein kinase DUN1; protein/p	5e-07
2kb3_A	143	Oxoglutarate dehydrogenase inhibitor; forkhead-ass	9e-07
2xt9_B	115	Putative signal transduction protein GARA; lyase-s	1e-06
1mzk_A	139	Kinase associated protein phosphatase; beta sandwi	1e-06
3hx1_A	131	SLR1951 protein; P74513_SYNY3, adenylate cyclase-l	2e-06
3po8_A	100	RV0020C protein, putative uncharacterized protein	1e-05
1g3g_A	164	Protien kinase SPK1; FHA domain, RAD53, phosphopep	2e-05
1g6g_A	127	Protein kinase RAD53; beta-sandwich, phosphopeptid	3e-05
1lgp_A	116	Cell cycle checkpoint protein CHFR; FHA, tungstate	3e-04
2pie_A	138	E3 ubiquitin-protein ligase RNF8; FHA domain, comp	3e-04

>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140

 Score = 93.8 bits (233), Expect = 6e-25
 Identities = 53/71 (74%), Positives = 60/71 (84%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
           AGKPP GLHLDV+K DKL++KL++DEKK YLFGRN DLCD  IDHQSCSRVHAA VYH  
Sbjct: 28  AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 87

Query: 178 LERAFLVDLGS 188
           L+R FL+DL S
Sbjct: 88  LKRVFLIDLNS 98

>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205

 Score = 59.2 bits (142), Expect = 3e-11
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 16/85 (18%)

Query: 120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDL--------------CDICIDHQSC 165
              + ++    K+    ++  L+ + CYL GR                   DI I  ++ 
Sbjct: 78  MYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETS 137

Query: 166 SRVHAAFVY--HTALERAFLVDLGS 188
           S+ H    +     + + +++DL S
Sbjct: 138 SKQHCVIQFRNVRGILKCYVMDLDS 162

>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 122 PVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERA 181
           P    L VL    +  +  LD  K Y+ G +  + DI +   S SR HA  +        
Sbjct: 2   PSRFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGND-NSV 60

Query: 182 FLVDLGS 188
            + DLGS
Sbjct: 61  LIEDLGS 67

>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDL--------------CDICIDHQSCSRVHA 170
           ++    K+    ++  L+ + CYL GR                   DI I  ++ S+ H 
Sbjct: 36  IYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHC 95

Query: 171 AFVY--HTALERAFLVDLGS 188
              +     + + +++DL S
Sbjct: 96  VIQFRNVRGILKCYVMDLDS 115

>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 117 GAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT 176
           G+   P+G  L +       ++         + GR+ D C + +   S S+ HA      
Sbjct: 18  GSHMEPIG-QLRLFSGTHGPERDFPLYLGKNVVGRSPD-CSVALPFPSISKQHAVIEISA 75

Query: 177 ALERAFLVDLGS 188
             +   L D GS
Sbjct: 76  WNKAPILQDCGS 87

>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
             +G     L L  +K  +    L          GR     +I I     S  H      
Sbjct: 4   GSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD 63

Query: 176 TALERAFLVDLGS 188
           +      + DLGS
Sbjct: 64  S--GNWVIQDLGS 74

>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
            G  P    + + +         L    C LFGR  + CDI I     S+ H     H  
Sbjct: 7   GGMWPTRRLVTIKRSGVDGPHFPLSLSTC-LFGRGIE-CDIRIQLPVVSKQHCKIEIHE- 63

Query: 178 LERAFLVDLGS 188
            + A L +  S
Sbjct: 64  -QEAILHNFSS 73

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
              G    G  + +  +D   +   L E    + GR +D     +     SR H    + 
Sbjct: 57  GQGGYGSAGTSVTLQLDDGSGRTYQLREGS-NIIGRGQD-AQFRLPDTGVSRRHLEIRWD 114

Query: 176 TALERAFLVDLGS 188
              + A L DL S
Sbjct: 115 G--QVALLADLNS 125

>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
              G PP    L V +      + +LD+      GR+ D  DI +D  + SR HA F   
Sbjct: 47  GVEGLPPGSALLVVKRGPNAGSRFLLDQAITSA-GRHPD-SDIFLDDVTVSRRHAEFRLE 104

Query: 176 TALERAFLVDLGS 188
                  +VD+GS
Sbjct: 105 N--NEFNVVDVGS 115

>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 129 VLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVY-----HTALERAFL 183
           V       QK+ +  +     GR++  CD+ +     S  HA F                
Sbjct: 22  VNLIPGKEQKVEITNRNVTTIGRSRS-CDVILSEPDISTFHAEFHLLQMDVDNFQRNLIN 80

Query: 184 VDLGS 188
           V   S
Sbjct: 81  VIDKS 85

>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
                P     L V +      + +LD+      GR+ +  DI +D  + SR HA F  +
Sbjct: 38  GAENLPAGSALLVVKRGPNAGARFLLDQPTTTA-GRHPE-SDIFLDDVTVSRRHAEFRIN 95

Query: 176 TALERAFLVDLGS 188
                  +VD+GS
Sbjct: 96  E--GEFEVVDVGS 106

>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
              G P     L V +      + +LD+      GR+ D  DI +D  + SR HA F   
Sbjct: 3   GVEGLPSGSALLVVKRGPNAGSRFLLDQPTTSA-GRHPD-SDIFLDDVTVSRRHAEFRLE 60

Query: 176 TALERAFLVDLGS 188
                  +VD+GS
Sbjct: 61  G--GEFQVVDVGS 71

>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 121 PPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA--- 177
            P+  H+ ++ +D   ++++L E   Y  GR+    DI I  Q  SR+HA  V  ++   
Sbjct: 7   KPLQEHILIILDDAGRREVLLTETF-YTIGRSPR-ADIRIKSQFVSRIHAVLVRKSSDDV 64

Query: 178 -----LERAFLVDLGS 188
                +         S
Sbjct: 65  QAAYRIIDGDEDGQSS 80

>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 124 GLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183
           G  + +  +D   +   L E    + GR +D     +     SR H    +    + A L
Sbjct: 3   GTSVTLQLDDGSGRTYQLREGS-NIIGRGQD-AQFRLPDTGVSRRHLEIRWDG--QVALL 58

Query: 184 VDLGS 188
            DL S
Sbjct: 59  ADLNS 63

>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICI-DHQSCSRVHAAFVYHTALERAFLVD 185
            D+  +   V K     KK + FGRN   CD  + +    S  H   +     +   L++
Sbjct: 46  RDLSADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQILLGE--DGNLLLN 102

Query: 186 LGS 188
             S
Sbjct: 103 DIS 105

>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICI-DHQSCSRVHAAFVYHTALERAFLVD 185
            D+  +   V K     KK + FGRN   CD  + +    S  H   +     +   L++
Sbjct: 18  RDLSADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQILLGE--DGNLLLN 74

Query: 186 LGS 188
             S
Sbjct: 75  DIS 77

>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 143 EKKCYLFGRNKDLCDICI-DHQSCSRVHAAFVYHTALERAFLVDLGS 188
            K+ +  GR +  CD+    ++  S  H   V      +  L D  +
Sbjct: 22  RKREWTIGRRRG-CDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTST 67

>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSC----SRVHAAFV 173
                 G    + +       L+L++      GR        +  + C    SR H    
Sbjct: 1   GAHMAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLK 59

Query: 174 YHTALERAFLVDLGS 188
            +    +  ++D  S
Sbjct: 60  QNPE-GQWTIMDNKS 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3elv_A	205	PRE-mRNA leakage protein 1; intrinsically unstruct	99.95
4h87_A	130	Kanadaptin; FHA domain of PF00498, mRNA processing	99.94
3els_A	158	PRE-mRNA leakage protein 1; intrinsically unstruct	99.9
2jpe_A	140	Nuclear inhibitor of protein phosphatase 1; FHA do	99.88
3gqs_A	106	Adenylate cyclase-like protein; FHA domain, struct	99.83
1uht_A	118	Expressed protein; FHA domain, beta-sandwich, anti	99.79
3va4_A	132	Mediator of DNA damage checkpoint protein 1; cell	99.77
2xt9_B	115	Putative signal transduction protein GARA; lyase-s	99.77
2kb3_A	143	Oxoglutarate dehydrogenase inhibitor; forkhead-ass	99.77
1r21_A	128	Antigen KI-67; beta sandwich, cell cycle; NMR {Hom	99.76
2kfu_A	162	RV1827 PThr 22; FHA domain, phosphorylation, intra	99.75
1mzk_A	139	Kinase associated protein phosphatase; beta sandwi	99.74
3hx1_A	131	SLR1951 protein; P74513_SYNY3, adenylate cyclase-l	99.72
3po8_A	100	RV0020C protein, putative uncharacterized protein	99.72
2csw_A	145	Ubiquitin ligase protein RNF8; 11-stranded beta sa	99.71
2pie_A	138	E3 ubiquitin-protein ligase RNF8; FHA domain, comp	99.69
2jqj_A	151	DNA damage response protein kinase DUN1; protein/p	99.69
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	99.68
1g3g_A	164	Protien kinase SPK1; FHA domain, RAD53, phosphopep	99.68
1lgp_A	116	Cell cycle checkpoint protein CHFR; FHA, tungstate	99.66
1dmz_A	158	Protein (protein kinase SPK1); beta-sandwich, anti	99.63
1wln_A	120	Afadin; beta sandwich, FHA domain, structural geno	99.61
1gxc_A	149	CHK2, CDS1, serine/threonine-protein kinase CHK2;	99.58
1g6g_A	127	Protein kinase RAD53; beta-sandwich, phosphopeptid	99.57
1qu5_A	182	Protein kinase SPK1; FHA, RAD53, transferase; NMR	99.57
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	99.54
3huf_A	325	DNA repair and telomere maintenance protein NBS1;	99.52
4ejq_A	154	Kinesin-like protein KIF1A; homodimer, FHA domain,	99.46
4a0e_A	123	YSCD, type III secretion protein; transport protei	99.39
3fm8_A	124	Kinesin-like protein KIF13B; kinesin, GAP, GTPase	99.36
3uv0_A	102	Mutator 2, isoform B; FHA, protein binding, dimeri	99.32
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.15
3kt9_A	102	Aprataxin; FHA domain, beta sandwich, beta sheet,	98.84
2brf_A	110	Bifunctional polynucleotide phosphatase/kinase; hy	98.52
1ujx_A	119	Polynucleotide kinase 3'-phosphatase; DNA repair,	98.42
1yj5_C	143	5' polynucleotide kinase-3' phosphatase FHA domai;	98.39
1wv3_A	238	Similar to DNA segregation ATPase and related prot	98.27
4egx_A	184	Kinesin-like protein KIF1A; FHA domain, transport	98.21
1wv3_A	238	Similar to DNA segregation ATPase and related prot	82.97

>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A

Probab=99.95  E-value=2.8e-28  Score=200.92  Aligned_cols=111  Identities=21%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             hhhcCCCCCCCCCCcccccCCCccccccccCCCcCccCCCCCCC-------------ceEEEEEeCCc----eeeEEEec
Q psy12929         80 NWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPV-------------GLHLDVLKEDK----LVQKLMLD  142 (198)
Q Consensus        80 ~~~~~~p~g~~~i~s~~~~~~~~~~~~y~eP~~~~~~~a~~p~~-------------~~~L~v~~~~~----~~~~~~l~  142 (198)
                      +.++|+|||+++.+++...+   +.++|.||+|     |++|..             .|+|+|+|+|.    .++++.|.
T Consensus        29 ~~pnf~~sg~L~~~~n~~~g---v~lky~eP~~-----a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~  100 (205)
T 3elv_A           29 IMPDFSPSGLLELESNNKEG---IALKHVEPQD-----AISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLN  100 (205)
T ss_dssp             --------------------------CCCCCTT-----BCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECS
T ss_pred             ccCCCcccccchhhhccccc---EEEeccCCCc-----ccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEec
Confidence            56899999999999999876   4999999999     888854             36799999876    57899998


Q ss_pred             CcceEEeccCC--------------CCcceEeCCCCcCccceEEEEEccCC--eEEEEeCCCCCCeeecCcC
Q psy12929        143 EKKCYLFGRNK--------------DLCDICIDHQSCSRVHAAFVYHTALE--RAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       143 ~~~~~~iGR~~--------------~~~di~l~~~~vSr~Ha~i~~~~~~~--~~~i~DL~StNGT~vNg~~  198 (198)
                      .+++|+|||++              ..|||+|+||+|||+||+|+++..++  .++|+||+|+|||||||++
T Consensus       101 ~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~r  172 (205)
T 3elv_A          101 GRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV  172 (205)
T ss_dssp             SCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEE
T ss_pred             CCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEE
Confidence            88899999995              35999999999999999999985322  4999999999999999974

>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}

Probab=99.94  E-value=2.5e-27  Score=182.86  Aligned_cols=87  Identities=28%  Similarity=0.390  Sum_probs=79.0

Q ss_pred             ccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEc---------
Q psy12929        106 NFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT---------  176 (198)
Q Consensus       106 ~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~---------  176 (198)
                      +|.||+|     |.+|...|+|+|+|+|..++++.|+.++.|+|||++ .|||+|+||+|||+||+|+++.         
T Consensus         7 py~~P~w-----a~~p~~~~~L~v~k~g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~   80 (130)
T 4h87_A            7 PYQEPPW-----GGPATAPYSLETLKGGTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGECDS   80 (130)
T ss_dssp             SCCCCTT-----BCCCCSCCEEEEEETTEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC----
T ss_pred             CCCCCCC-----ccCCCCCEEEEEEECCeeeeeEEeCCCceEEEcCCc-CCCEEeCCCCcchhcEEEEEecccCccceec
Confidence            5999999     889999999999999999999999988889999998 8999999999999999999852         


Q ss_pred             cCCeEEEEeCCCCCCeeecCcC
Q psy12929        177 ALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       177 ~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .++.++|+||+|+|||||||++
T Consensus        81 ~~~~~~l~Dl~StNGT~vNg~r  102 (130)
T 4h87_A           81 NGPGFYLYDLGSTHGTFLNKTR  102 (130)
T ss_dssp             --CCEEEEECSCSSCEEETTEE
T ss_pred             cCCcceEeeCCCCCceEECCEE
Confidence            2457999999999999999974

>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.5e-25  Score=173.62  Aligned_cols=91  Identities=21%  Similarity=0.323  Sum_probs=76.4

Q ss_pred             cccccccCCCcCccCCCCCCCc-------------eEEEEEeCCc----eeeEEEecCcceEEeccCC------------
Q psy12929        103 VGANFSIDNSLTFAGAGKPPVG-------------LHLDVLKEDK----LVQKLMLDEKKCYLFGRNK------------  153 (198)
Q Consensus       103 ~~~~y~eP~~~~~~~a~~p~~~-------------~~L~v~~~~~----~~~~~~l~~~~~~~iGR~~------------  153 (198)
                      +.++|.||.+     |++|...             |+|.++++|.    .++.+.|..++.|+|||++            
T Consensus         2 ~~l~~~ep~~-----a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n   76 (158)
T 3els_A            2 AMGKHVEPQD-----AISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRT   76 (158)
T ss_dssp             ---CCCCCTT-----BCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------C
T ss_pred             ceeEecCCcc-----ccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccc
Confidence            4789999999     8888533             6799999986    5789999999999999995            


Q ss_pred             --CCcceEeCCCCcCccceEEEEEccCC--eEEEEeCCCCCCeeecCcC
Q psy12929        154 --DLCDICIDHQSCSRVHAAFVYHTALE--RAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       154 --~~~di~l~~~~vSr~Ha~i~~~~~~~--~~~i~DL~StNGT~vNg~~  198 (198)
                        ..|||+|++|+|||+||+|+++..++  .++|+||||+|||||||++
T Consensus        77 ~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~r  125 (158)
T 3els_A           77 EIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV  125 (158)
T ss_dssp             CCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEE
T ss_pred             ccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEE
Confidence              36999999999999999999985221  3999999999999999974

>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}

Probab=99.88  E-value=4e-23  Score=160.63  Aligned_cols=90  Identities=61%  Similarity=0.947  Sum_probs=80.1

Q ss_pred             ccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEE
Q psy12929        104 GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL  183 (198)
Q Consensus       104 ~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i  183 (198)
                      ..+|.+|.|     +.+|...|+|.+++++..+..+.|..++.++|||+++.|||+|+++.|||+||+|.++..++.++|
T Consensus        19 ~~~~~~P~~-----a~~p~~~~~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l   93 (140)
T 2jpe_A           19 LPLFDCPTW-----AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFL   93 (140)
T ss_dssp             CCSCCCCSS-----BCCCCSSCBEEEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEE
T ss_pred             ccccCCCCc-----ccCCCcCEEEEEEcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEE
Confidence            568999999     888888999999998888889999776669999998449999999999999999999843478999


Q ss_pred             EeCCCCCCeeecCcC
Q psy12929        184 VDLGSILPRELYGVT  198 (198)
Q Consensus       184 ~DL~StNGT~vNg~~  198 (198)
                      +||+|+|||||||++
T Consensus        94 ~Dl~S~NGT~vNg~~  108 (140)
T 2jpe_A           94 IDLNSTHGTFLGHIR  108 (140)
T ss_dssp             ECCSCSSCEESSSCE
T ss_pred             EECCCCCCeEECCEE
Confidence            999999999999974

>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}

Probab=99.83  E-value=9.3e-21  Score=140.57  Aligned_cols=77  Identities=27%  Similarity=0.383  Sum_probs=66.3

Q ss_pred             CCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        121 PPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       121 p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      |...|.|.++++...++.+.|..+..++|||++..||++++++.|||+||.|.++. ++.++|.|++|+|||||||++
T Consensus         1 p~~~~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~~~l~Dl~S~nGt~vng~~   77 (106)
T 3gqs_A            1 QPSRFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN-DNSVLIEDLGSKNGVIVEGRK   77 (106)
T ss_dssp             --CEEEEEECC-CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT-TSCEEEEECSCSSCCEETTEE
T ss_pred             CCceEEEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC-CCcEEEEECcCCCCeEECCEE
Confidence            44679999998888889999987767999999756999999999999999999973 467999999999999999974

>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2

Probab=99.79  E-value=1.2e-19  Score=136.89  Aligned_cols=77  Identities=19%  Similarity=0.075  Sum_probs=65.9

Q ss_pred             CCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       120 ~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+.+.+.|.+.++...++.+.|...+.++|||++..||++|+++.|||+||+|.++  ++.++|+|++|+|||||||++
T Consensus         8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGT~vng~~   84 (118)
T 1uht_A            8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--SGNWVIQDLGSSNGTLLNSNA   84 (118)
T ss_dssp             CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SSSEEEECCCCSSCCEESSSB
T ss_pred             CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence            34456889888877667888997655699999944899999999999999999986  478999999999999999974

>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B

Probab=99.77  E-value=5.9e-19  Score=136.23  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=63.4

Q ss_pred             eEEEEEeCCc-eeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        125 LHLDVLKEDK-LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       125 ~~L~v~~~~~-~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+|.++.++. .++.+.|... .++|||++ .||++++++.|||+||+|.++..++.++|+||+|+|||||||++
T Consensus        25 g~L~v~~g~~~~g~~~~L~~~-~~~IGR~~-~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~   97 (132)
T 3va4_A           25 GQLRLFSGTHGPERDFPLYLG-KNVVGRSP-DCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPP   97 (132)
T ss_dssp             EEEEECCBTTBSCEEEEECSE-EEEEESST-TSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTT
T ss_pred             EEEEEEeCCCCCceEEEECCC-CEEEccCC-CCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEE
Confidence            4788988877 7889999654 48999998 79999999999999999999743578999999999999999974

>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}

Probab=99.77  E-value=1.1e-18  Score=131.13  Aligned_cols=75  Identities=25%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             CCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       120 ~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .|...+.|.+..+...+..+.|... .++|||++ .||++|+++.|||+||+|.++  ++.++|.|++|+|||||||++
T Consensus         7 ~p~~~~~L~v~~g~~~g~~~~l~~~-~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~   81 (115)
T 2xt9_B            7 LPSGSALLVVKRGPNAGSRFLLDQP-TTSAGRHP-DSDIFLDDVTVSRRHAEFRLE--GGEFQVVDVGSLNGTYVNREP   81 (115)
T ss_dssp             -CCSCEEEEEEESTTTTCEEEECSS-EEEEESST-TSSEECCSTTSCSSCEEEEEE--TTEEEEEECSCSSCEEETTEE
T ss_pred             CCCCcEEEEEEeCCCCCeEEEECCC-CEEECCCC-CCCEEeCCcccChhheEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence            3455678989888777889999654 59999998 799999999999999999997  479999999999999999974

>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A

Probab=99.77  E-value=1.2e-18  Score=136.14  Aligned_cols=76  Identities=25%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             CCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        119 GKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       119 ~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..|...|.|.+.+++..+..+.|... .++|||++ .|||+|+++.|||+||+|.++  ++.++|.|++|+|||||||++
T Consensus        41 ~~p~~~~~L~v~~G~~~g~~~~L~~~-~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~--~~~~~l~DlgS~NGT~VNg~~  116 (143)
T 2kb3_A           41 NLPAGSALLVVKRGPNAGARFLLDQP-TTTAGRHP-ESDIFLDDVTVSRRHAEFRIN--EGEFEVVDVGSLNGTYVNREP  116 (143)
T ss_dssp             TCSSSCEEEEEEESTTTTCEEEECSS-EEEESSCT-TCSBCCCCSSCCSSSEEEEEE--TTEEEEEESCCSSCCEETTEE
T ss_pred             cCCCccEEEEEEeCCCCCeEEEeCCC-CeeccCCC-CCCEEeCCCCcChhhEEEEEE--CCEEEEEECCCcCCeEECCEE
Confidence            33555689999988777889999654 59999998 799999999999999999996  589999999999999999974

>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*

Probab=99.76  E-value=1.7e-18  Score=132.31  Aligned_cols=72  Identities=26%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             CceEEEEEe-CCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        123 VGLHLDVLK-EDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       123 ~~~~L~v~~-~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ...+|.++. ++..+..+.|.. ..++|||++ .||++|+++.|||+||.|.++  ++.++|.|++|+|||||||++
T Consensus        11 ~~~~L~v~~~~~~~g~~~~l~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vNg~~   83 (128)
T 1r21_A           11 PTRRLVTIKRSGVDGPHFPLSL-STCLFGRGI-ECDIRIQLPVVSKQHCKIEIH--EQEAILHNFSSTNPTQVNGSV   83 (128)
T ss_dssp             CCEEEEEEEETTEEEEEEECCS-SEEEEESST-TSSEECCCTTSCTTCEEEEEC--SSCEEECCCCSSSCCEETTEE
T ss_pred             CceEEEEEeCCCCCceEEEECC-CCEEECCCC-CCCEEECCCCCChhHEEEEEE--CCEEEEEECCCCCCEEECCEE
Confidence            346788887 466778999965 458999998 799999999999999999996  478999999999999999974

>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A

Probab=99.75  E-value=5e-18  Score=135.33  Aligned_cols=75  Identities=27%  Similarity=0.295  Sum_probs=65.8

Q ss_pred             CCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       120 ~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .|...+.|.+.++...+..+.|.. ..++|||++ .|||+|+++.|||+||+|.++  +++++|+|++|+|||||||++
T Consensus        51 ~p~~~~~L~v~~G~~~g~~~~L~~-~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~--~~~~~l~DlgS~NGT~VNg~~  125 (162)
T 2kfu_A           51 LPPGSALLVVKRGPNAGSRFLLDQ-AITSAGRHP-DSDIFLDDVTVSRRHAEFRLE--NNEFNVVDVGSLNGTYVNREP  125 (162)
T ss_dssp             CCSSCCEEEEEESTTCSCEEETTS-SEEEEESCS-SSSEESTTTSSSSCSEEEEEE--TTEEEEECCCCSSCEEETTBC
T ss_pred             CCCccEEEEEEeCCCCCeEEEECC-CCEEECCCC-CCCEEECCCCcChhhEEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence            344568898888877788999965 459999998 799999999999999999997  589999999999999999975

>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}

Probab=99.72  E-value=1.5e-17  Score=128.11  Aligned_cols=72  Identities=26%  Similarity=0.333  Sum_probs=58.5

Q ss_pred             eEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC-C--eEEEEeC-----CCCCCeeecC
Q psy12929        125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-E--RAFLVDL-----GSILPRELYG  196 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-~--~~~i~DL-----~StNGT~vNg  196 (198)
                      +.+.+++++.....+.|... .++|||++ .|||+|+++.|||+||.|.++..+ +  .++|+|+     +|+|||||||
T Consensus        11 ~~~lvv~~~~~~~~~~l~~~-~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg   88 (131)
T 3hx1_A           11 EHILIILDDAGRREVLLTET-FYTIGRSP-RADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMING   88 (131)
T ss_dssp             EEEEEEEETTEEEEEEECSS-EEEEESST-TSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETT
T ss_pred             ceEEEEECCCCcEEEEECCC-CEEECCCC-CCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECC
Confidence            45557777666788999654 49999998 799999999999999999986322 2  4999999     7999999999


Q ss_pred             cC
Q psy12929        197 VT  198 (198)
Q Consensus       197 ~~  198 (198)
                      ++
T Consensus        89 ~~   90 (131)
T 3hx1_A           89 KK   90 (131)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A

Probab=99.72  E-value=1.1e-17  Score=122.58  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             eEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..|.+. +| .++.+.|.... ++|||++ .||++++++.|||+||.|.++  +++++|+|++|+|||||||++
T Consensus         6 ~~l~~~-~g-~g~~~~l~~~~-~~IGR~~-~~di~l~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~   73 (100)
T 3po8_A            6 VTLQLD-DG-SGRTYQLREGS-NIIGRGQ-DAQFRLPDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAP   73 (100)
T ss_dssp             EEEEEC-SS-SCCEEECCSEE-EEEESST-TCSEECCCTTSCSSCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred             EEEEEE-CC-CCcEEEECCCC-EEEeCCC-CCCEECCCCCcChhhCEEEEe--CCEEEEEECCCCCCEEECCEE
Confidence            345443 33 36789996655 9999997 899999999999999999986  478999999999999999974

>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2

Probab=99.71  E-value=1.7e-17  Score=129.61  Aligned_cols=73  Identities=15%  Similarity=0.010  Sum_probs=60.8

Q ss_pred             CCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC----cCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        122 PVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS----CSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       122 ~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~----vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ...|.|.  ..|.....+.|..+..++|||++ .||++|+++.    |||+||+|.++. ++.++|+||+|+|||||||+
T Consensus        15 ~~~w~L~--~~G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~   90 (145)
T 2csw_A           15 GRSWCLR--RVGMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRA   90 (145)
T ss_dssp             SEEEEEC--CTTCSCCBEECCTTCCEEEESST-TSSEECCCSSCGGGSCTTCEEEEECT-TSCEEEEBSSCSSCEEESSC
T ss_pred             CccEEEE--EeCCCCCeEEeCCCCcEEECCCC-CCCEEECCCCcCCCCChhHeEEEEcC-CCeEEEEECCCCCCeEECCE
Confidence            3458776  45554567778666679999998 8999999999    999999999963 56899999999999999997


Q ss_pred             C
Q psy12929        198 T  198 (198)
Q Consensus       198 ~  198 (198)
                      +
T Consensus        91 ~   91 (145)
T 2csw_A           91 R   91 (145)
T ss_dssp             B
T ss_pred             E
Confidence            4

>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2

Probab=99.69  E-value=5.3e-17  Score=125.76  Aligned_cols=73  Identities=15%  Similarity=-0.012  Sum_probs=59.5

Q ss_pred             CCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC----cCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        122 PVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS----CSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       122 ~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~----vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ...|.|..  .|.....+.|..+..++|||++ .||++|+++.    |||+||+|.+.. ++.++|.|++|+|||||||+
T Consensus         7 ~~~w~l~~--~G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~   82 (138)
T 2pie_A            7 GRSWCLRR--VGMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRA   82 (138)
T ss_dssp             CEEEEEEE--TTCSSCBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECT-TSCEEEEECSCSSCEEETTE
T ss_pred             CccEEEEE--eCCCCCEEEecCCCeEEECCCC-CCCEEeCCCCcCCCCChhHeEEEEcC-CCcEEEEECCCCCCeEECCE
Confidence            34576643  4444457888656669999998 8999999999    999999999853 56899999999999999997


Q ss_pred             C
Q psy12929        198 T  198 (198)
Q Consensus       198 ~  198 (198)
                      +
T Consensus        83 ~   83 (138)
T 2pie_A           83 R   83 (138)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*

Probab=99.69  E-value=1.2e-16  Score=125.57  Aligned_cols=70  Identities=23%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEc------cCCeEEEEeCCCCCCeeecCcC
Q psy12929        126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT------ALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~------~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      +|.+..++ .+..+.|..+..++|||++ .|||+|+++.|||+||+|.+..      .++.++|.|+ |+|||||||++
T Consensus        20 ~L~~~~~~-~g~~~~l~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl-S~NGT~VNg~~   95 (151)
T 2jqj_A           20 HLVNLIPG-KEQKVEITNRNVTTIGRSR-SCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK-SRNGTFINGNR   95 (151)
T ss_dssp             EEEEEETT-EEEEEEEECCSCEEEESST-TSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEETTEE
T ss_pred             EEEEecCC-CceEEEEcCCCeEEeCCCC-CCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEEC-CCCCeEECCEE
Confidence            56665443 5678899765669999998 8999999999999999999931      1468999999 99999999974

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}

Probab=99.68  E-value=3.6e-17  Score=129.76  Aligned_cols=60  Identities=20%  Similarity=0.224  Sum_probs=53.9

Q ss_pred             eeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        135 LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       135 ~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..+.+.|.... ++|||++ .|||+|+++.|||+||+|.++  ++.++|+||+|+|||||||++
T Consensus        76 ~g~~~~L~~~~-~~IGR~~-~~dI~L~d~~VSr~HA~I~~~--~~~~~l~DlgStNGT~VNG~~  135 (157)
T 3oun_A           76 SGRTYQLREGS-NIIGRGQ-DAQFRLPDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAP  135 (157)
T ss_dssp             TCCEEECCSEE-EEEESST-TCSEECCCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred             CCeEEEECCCc-EEEEeCC-CCCEEeCCCCcChhHEEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence            47789996654 9999997 899999999999999999996  478999999999999999974

>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*

Probab=99.68  E-value=4.6e-17  Score=129.70  Aligned_cols=78  Identities=21%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             CCCCCCceEEEEEeCCceeeEEEecCc----------ceEEeccCCCCcceEeCCC-CcCccceEEEEEccCCeEEEEeC
Q psy12929        118 AGKPPVGLHLDVLKEDKLVQKLMLDEK----------KCYLFGRNKDLCDICIDHQ-SCSRVHAAFVYHTALERAFLVDL  186 (198)
Q Consensus       118 a~~p~~~~~L~v~~~~~~~~~~~l~~~----------~~~~iGR~~~~~di~l~~~-~vSr~Ha~i~~~~~~~~~~i~DL  186 (198)
                      +..+...|+|.+.+|...+..+.|...          ..++|||++ .||++|+++ .|||+||+|.++. ++.++|.|+
T Consensus        27 ~~~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~-~~di~l~d~~~vSr~Ha~I~~~~-~g~~~l~Dl  104 (164)
T 1g3g_A           27 QIGENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-DGNLLLNDI  104 (164)
T ss_dssp             CCCSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSS-SSSEECCCCTTTTSSCEEEEECS-TTCEEEEEC
T ss_pred             ccCCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCC-CCCEEeCCcCCcChhHEEEEECC-CCCEEEEEC
Confidence            344556689999988877888888643          268999998 699999998 6999999999963 578999999


Q ss_pred             CCCCCeeecCcC
Q psy12929        187 GSILPRELYGVT  198 (198)
Q Consensus       187 ~StNGT~vNg~~  198 (198)
                       |+|||||||++
T Consensus       105 -S~NGT~vNg~~  115 (164)
T 1g3g_A          105 -STNGTWLNGQK  115 (164)
T ss_dssp             -CSSCEEETTEE
T ss_pred             -CCCCeEECCEE
Confidence             99999999974

>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A

Probab=99.66  E-value=7.5e-17  Score=121.02  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=57.0

Q ss_pred             EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCC-CcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQ-SCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~-~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      +|..+.++.....+.|.. ..++|||++ .||++|+++ .|||+||+|.++..++.++|.| +|+|||||||++
T Consensus         6 ~L~~~~~~~~~~~~~l~~-~~~~iGR~~-~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S~NGt~vng~~   76 (116)
T 1lgp_A            6 RLLRLGAEEGEPHVLLRK-REWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDEKSGQVTLED-TSTSGTVINKLK   76 (116)
T ss_dssp             EECCTTCCSSSCCEEECS-SEEEEESST-TSSEECTTCTTSCTTCEEEEECTTTCCEEEEE-CSSSCCCCCCCC
T ss_pred             EEEEeCCCCCccEEEECC-CCEEECCCC-CCCEEeCCCCCCChhHeEEEEECCCCeEEEEE-CCcCCcEECCEE
Confidence            565554444456788864 458999998 899999875 9999999999974357899999 999999999974

>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*

Probab=99.63  E-value=4e-16  Score=123.58  Aligned_cols=71  Identities=17%  Similarity=0.266  Sum_probs=55.7

Q ss_pred             EEEEEeCCceeeEEEecCc-ceEEeccCCCCcceEeCCCCcCccceEEEEEccC-------------CeEEEEeCCCCCC
Q psy12929        126 HLDVLKEDKLVQKLMLDEK-KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-------------ERAFLVDLGSILP  191 (198)
Q Consensus       126 ~L~v~~~~~~~~~~~l~~~-~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-------------~~~~i~DL~StNG  191 (198)
                      .|.+..+......+.|... ..++|||++ .||++|+++.|||+||+|.++...             +.++|+|+ |+||
T Consensus         7 ~L~p~~~~~~~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNG   84 (158)
T 1dmz_A            7 TLKPLPDSIIQESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNV   84 (158)
T ss_dssp             EEEECTTSSCCCCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTC
T ss_pred             EEEeCCCCccceEEEEcCCCceEEECCCC-CCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCC
Confidence            3444444333457788543 359999998 899999999999999999987411             57999999 9999


Q ss_pred             eeecCcC
Q psy12929        192 RELYGVT  198 (198)
Q Consensus       192 T~vNg~~  198 (198)
                      |||||++
T Consensus        85 T~VNg~r   91 (158)
T 1dmz_A           85 SYLNNNR   91 (158)
T ss_dssp             CEETTEE
T ss_pred             eEECCEE
Confidence            9999974

>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2

Probab=99.61  E-value=1.2e-15  Score=115.36  Aligned_cols=71  Identities=13%  Similarity=-0.095  Sum_probs=57.6

Q ss_pred             eEEEEEeCC-ce----eeEEEecCcceEEeccC-CCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        125 LHLDVLKED-KL----VQKLMLDEKKCYLFGRN-KDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       125 ~~L~v~~~~-~~----~~~~~l~~~~~~~iGR~-~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+|.++.++ ..    ...+.|.... ++|||+ ...|||+|+++.|||+||.|.++  ++.++|.|++|+|||||||++
T Consensus        12 p~Lv~l~~d~~~s~~~~~~~~L~~~~-~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~~~l~dl~S~ngt~vNg~~   88 (120)
T 1wln_A           12 PYLVELSPDGSDSRDKPKLYRLQLSV-TEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGVVTVTPRSMDAETYVDGQR   88 (120)
T ss_dssp             CEEEEECSSSCCCSSCCCEEECCSEE-EECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSCEEEEESCSSSCEEETSCB
T ss_pred             CEEEEeCCChhhccCccEEEEECCCC-EEECCCCCCCCcEEECCCCCchhheEEEEc--CCEEEEEECCCCCCEEECCEE
Confidence            467666543 22    5678896544 899974 23899999999999999999986  578999999999999999974

>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2

Probab=99.58  E-value=3.1e-15  Score=117.19  Aligned_cols=70  Identities=23%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             Cce-EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC---------cCccceEEEEEccCC----eEEEEeCCC
Q psy12929        123 VGL-HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS---------CSRVHAAFVYHTALE----RAFLVDLGS  188 (198)
Q Consensus       123 ~~~-~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~---------vSr~Ha~i~~~~~~~----~~~i~DL~S  188 (198)
                      ..| +|....++.  ..+.|.. ..++|||++ .||++|+++.         |||+||.|.++. ++    .++|.|+ |
T Consensus        28 ~~w~~L~~~~~~~--~~i~L~~-~~~~IGR~~-~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~-~~~~~~~~~i~D~-S  101 (149)
T 1gxc_A           28 APWARLWALQDGF--ANLECVN-DNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREV-GPKNSYIAYIEDH-S  101 (149)
T ss_dssp             -CCEEEEECSTTC--CCEEECS-SEEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEE-CTTSSEEEEEEEC-C
T ss_pred             CeeEEEEEcCCCC--ceEEECC-CCEEecCCC-CCCEEECCccccccccCCcCchhheEEEEEC-CCCceeEEEEEEC-C
Confidence            345 676665443  3588864 459999998 8999999995         999999999985 22    7999997 9


Q ss_pred             CCCeeecCcC
Q psy12929        189 ILPRELYGVT  198 (198)
Q Consensus       189 tNGT~vNg~~  198 (198)
                      +|||||||++
T Consensus       102 tNGT~VNg~~  111 (149)
T 1gxc_A          102 GNGTFVNTEL  111 (149)
T ss_dssp             SSCEEETTEE
T ss_pred             CCCeEECCEE
Confidence            9999999974

>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2

Probab=99.57  E-value=5.3e-15  Score=112.88  Aligned_cols=50  Identities=26%  Similarity=0.330  Sum_probs=45.2

Q ss_pred             eEEeccCCCCcceEeCCC-CcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        146 CYLFGRNKDLCDICIDHQ-SCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       146 ~~~iGR~~~~~di~l~~~-~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .++|||++ .||++|+++ .|||+||.|.++. ++.++|.|+ |+|||||||++
T Consensus        37 ~~~IGR~~-~~di~l~~~~~vSr~Ha~i~~~~-~g~~~l~Dl-S~NGT~vNg~~   87 (127)
T 1g6g_A           37 VWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-DGNLLLNDI-STNGTWLNGQK   87 (127)
T ss_dssp             EEEEESST-TSSEECCSCTTSCSSCEEEEECT-TSCEEEEEC-CSSCCEETTEE
T ss_pred             CEEECCCC-CCCEEeCCCCCCChhHeEEEECC-CCcEEEEEC-CcCCeEECCEE
Confidence            58999998 799999998 5999999999963 578999999 99999999974

>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2

Probab=99.57  E-value=2.4e-15  Score=121.83  Aligned_cols=61  Identities=16%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             eeEEEecCc-ceEEeccCCCCcceEeCCCCcCccceEEEEEccC-------------CeEEEEeCCCCCCeeecCcC
Q psy12929        136 VQKLMLDEK-KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-------------ERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       136 ~~~~~l~~~-~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-------------~~~~i~DL~StNGT~vNg~~  198 (198)
                      ...+.|... ..++|||++ .||++|+++.|||+||.|.++...             +.++|.|+ |+|||||||++
T Consensus        41 ~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~r  115 (182)
T 1qu5_A           41 QESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNR  115 (182)
T ss_dssp             CSCCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSCCEETTEE
T ss_pred             ceEEEEcCCCceEEECCCC-CCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCCeEECCEE
Confidence            456777543 359999998 899999999999999999987311             67999999 99999999974

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=99.54  E-value=6.3e-15  Score=130.95  Aligned_cols=60  Identities=23%  Similarity=0.123  Sum_probs=53.6

Q ss_pred             eeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        135 LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       135 ~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+..+.|... .++|||++ .|||+++++.|||+||.|.++  +++++|.|++|+|||||||++
T Consensus       297 ~g~~~~l~~~-~~~iGR~~-~~di~l~~~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~  356 (388)
T 2ff4_A          297 SGRGYPLQAA-ATRIGRLH-DNDIVLDSANVSRHHAVIVDT--GTNYVINDLRSSNGVHVQHER  356 (388)
T ss_dssp             TCCEEECCSS-EEEEESST-TSSEECCCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred             CCcEEEECCC-CEEEecCC-CCeEEECCCccChhHeEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence            3578999654 59999998 799999999999999999996  578999999999999999974

>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*

Probab=99.52  E-value=1.1e-14  Score=126.42  Aligned_cols=73  Identities=19%  Similarity=0.134  Sum_probs=55.6

Q ss_pred             eEEEEEeCCceeeEEEecCcceEEeccCCCC--cceEeCCCCcCccceEEEEEcc---------CCeEEEEeCCCCCCee
Q psy12929        125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDL--CDICIDHQSCSRVHAAFVYHTA---------LERAFLVDLGSILPRE  193 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~--~di~l~~~~vSr~Ha~i~~~~~---------~~~~~i~DL~StNGT~  193 (198)
                      |.|..-.+-..++++.|.... |+|||....  ++|+++||+|||+||+|+++..         ..+++|+||||+||||
T Consensus         2 WiL~~~~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTf   80 (325)
T 3huf_A            2 WIIEAEGDILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTK   80 (325)
T ss_dssp             EEEEESTTTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEE
T ss_pred             cEEeccCccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEE
Confidence            666552111246788887766 999999631  2469999999999999999731         2369999999999999


Q ss_pred             ecCcC
Q psy12929        194 LYGVT  198 (198)
Q Consensus       194 vNg~~  198 (198)
                      |||++
T Consensus        81 VNGer   85 (325)
T 3huf_A           81 VNEKV   85 (325)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            99974

>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A

Probab=99.46  E-value=1.2e-13  Score=108.93  Aligned_cols=72  Identities=18%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             EEEEEeCCce---eeEEEecCcceEEeccCCC--CcceEeCCCCcCccceEEEEEccCC--eEEEEeCCCCCCeeecCcC
Q psy12929        126 HLDVLKEDKL---VQKLMLDEKKCYLFGRNKD--LCDICIDHQSCSRVHAAFVYHTALE--RAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       126 ~L~v~~~~~~---~~~~~l~~~~~~~iGR~~~--~~di~l~~~~vSr~Ha~i~~~~~~~--~~~i~DL~StNGT~vNg~~  198 (198)
                      +|.-+..+..   .-.+.|... .++|||.+.  .|||+|++|.|||+||+|+++..++  .++++|++|+|||||||++
T Consensus        40 hLvnLn~Dp~ls~~lvy~L~~g-~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~  118 (154)
T 4ejq_A           40 HLVNLNEDPLMSECLLYYIKDG-ITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKK  118 (154)
T ss_dssp             EEEECCCCTTCSSEEEEECCSE-EEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEE
T ss_pred             eEEEecCCcccCceEEEEeCCC-CEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEE
Confidence            5655544322   124667554 589999742  6999999999999999999985322  5899999999999999974

>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A

Probab=99.39  E-value=4.4e-13  Score=101.97  Aligned_cols=71  Identities=17%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             CceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        123 VGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       123 ~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..|+|.++.|...+..++|... .++||+++-.||++|.||.||++||.|+..  +++++|.  +|+||||+||++
T Consensus         3 ~~~klrvlsG~~~G~~l~L~~~-~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~--~~g~~L~--~s~ngt~vdG~~   73 (123)
T 4a0e_A            3 GSWVCRFYQGKHRGVEVELPHG-RCVFGSDPLQSDIVLSDSEIAPVHLVLMVD--EEGIRLT--DSAEPLLQEGLP   73 (123)
T ss_dssp             CCEEEEECSGGGTTCEEEECSE-EEEEESCTTTCSEECCCTTSCSSCEEEEEE--TTEEEEE--EESSCCEETTEE
T ss_pred             ceEEEEEecCCCCCcEEEcCCC-cEEECCCCCCCCEEEeCCCccceeEEEEEC--CCeEEEE--eccCCEEECCEE
Confidence            4599999988888889999765 599999953799999999999999999997  4789997  799999999974

>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*

Probab=99.36  E-value=1.2e-12  Score=99.95  Aligned_cols=69  Identities=17%  Similarity=0.091  Sum_probs=54.8

Q ss_pred             eEEEEEeCCcee---eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        125 LHLDVLKEDKLV---QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       125 ~~L~v~~~~~~~---~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+|..+.++...   -.+.|++ . .+|||++ .|||+|+++.|||+||+|+... ++.++|+|++ +|||||||++
T Consensus        27 PhLvnLn~Dp~~s~~l~y~L~~-~-t~IGR~~-~~DI~L~~~~Vs~~Ha~I~~~~-~g~~~l~dl~-~ngt~VNG~~   98 (124)
T 3fm8_A           27 CFLVNLNADPALNELLVYYLKE-H-TLIGSAN-SQDIQLCGMGILPEHCIIDITS-EGQVMLTPQK-NTRTFVNGSS   98 (124)
T ss_dssp             CEEEETTCCTTSSCCCEEECCS-E-EEEESST-TCSEECCSTTCCSSCEEEEECT-TSCEEEEECT-TCCEEETTEE
T ss_pred             cEEEEeCCCCccCceEEEECCC-C-eEECCCC-CCCEEECCCCeecceEEEEECC-CCeEEEEECC-CCCEEECCEE
Confidence            367666554322   3567754 3 7999997 7999999999999999998853 5789999995 8999999974

>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}

Probab=99.32  E-value=1.6e-12  Score=95.27  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=47.4

Q ss_pred             EEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCe-eecCcC
Q psy12929        138 KLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPR-ELYGVT  198 (198)
Q Consensus       138 ~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT-~vNg~~  198 (198)
                      .+.|..+..|.|||+| .|+++|++|+||+.||.|....  ++.|+. . |+||| ||||++
T Consensus        14 ~v~l~~~~~~rIGR~~-~~~l~LddpsVs~~HAti~~~~--~G~~~l-~-S~nGtVFVNGqr   70 (102)
T 3uv0_A           14 AILLKADTIYRIGRQK-GLEISIADESMELAHATACILR--RGVVRL-A-ALVGKIFVNDQE   70 (102)
T ss_dssp             CEECCTTCCEEEESST-TSTEECCCTTSCTTCEEEEEEE--TTEEEE-E-ESSSCEEETTEE
T ss_pred             cEEeecCcEEEEcCCC-CCcEEECCcccccceEEEEecC--CceEEE-E-eccCcEEECCEE
Confidence            4667677789999998 8999999999999999998864  566763 3 99995 999974

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.15  E-value=4.7e-11  Score=105.94  Aligned_cols=67  Identities=24%  Similarity=0.297  Sum_probs=53.3

Q ss_pred             EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCc---------CccceEEEEEccCC---eEEEEeCCCCCCee
Q psy12929        126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSC---------SRVHAAFVYHTALE---RAFLVDLGSILPRE  193 (198)
Q Consensus       126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~v---------Sr~Ha~i~~~~~~~---~~~i~DL~StNGT~  193 (198)
                      +|.+..++.  ..++|..+ .++|||++ .||+++++|.|         ||+||.|.....++   .+||.| +|+||||
T Consensus        12 ~l~~~~~~~--~~~~l~~~-~~~iGR~~-~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D-~S~nGt~   86 (419)
T 3i6u_A           12 RLWALQDGF--ANLECVND-NYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIED-HSGNGTF   86 (419)
T ss_dssp             EEEECSSSS--CCEEECSS-EEEEESST-TSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEE-CCSSCEE
T ss_pred             EeeecCCCC--CceEecCC-CEEecCCC-ccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEE-CCcCCce
Confidence            676666654  36788654 49999997 89999999986         99999996643222   399999 8999999


Q ss_pred             ecCc
Q psy12929        194 LYGV  197 (198)
Q Consensus       194 vNg~  197 (198)
                      |||+
T Consensus        87 vn~~   90 (419)
T 3i6u_A           87 VNTE   90 (419)
T ss_dssp             ETTE
T ss_pred             ECcc
Confidence            9986

>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0

Probab=98.84  E-value=1.2e-08  Score=75.13  Aligned_cols=57  Identities=18%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ..+.|...+..+|||+| .+.|  .|..|||+|+.+..+.+.+.+.|.|+ ++|+|++||+
T Consensus        15 ~~I~L~~g~~v~iGR~p-~t~I--~DkrcSR~h~~L~~~~~~g~v~vk~l-g~Np~~vng~   71 (102)
T 3kt9_A           15 QRIRLPHLEAVVIGRGP-ETKI--TDKKCSRQQVQLKAECNKGYVKVKQV-GVNPTSIDSV   71 (102)
T ss_dssp             CEEECCBTCEEEECSST-TTCC--CCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEETTE
T ss_pred             CcEEcCCCCcEEeccCC-cccc--ccCcccCcceEEEEecCCCEEEEEEC-cCCCCeECCE
Confidence            57899877878899998 5654  69999999999999864567899999 5999999986

>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*

Probab=98.52  E-value=1.6e-07  Score=70.04  Aligned_cols=67  Identities=16%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             eEEEEEeCCceeeEEEec-CcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        125 LHLDVLKEDKLVQKLMLD-EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~-~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ..|....++  ...+.|. .....+|||+|   +..+.|..|||+|+.+..+.+++.+.+.|+ ++|+|++||.
T Consensus        10 c~L~~~~~~--~~~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~~~~v~vk~l-G~Np~~vng~   77 (110)
T 2brf_A           10 LWLESPPGE--APPIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPETRTVAVKQL-GVNPSTTGTQ   77 (110)
T ss_dssp             EEEECSTTS--SCCEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEEC-C
T ss_pred             EEEEeCCCC--CCcEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecCCCEEEEEEc-ccCCcEECCE
Confidence            345444333  2478885 33458999998   244789999999999999876678999999 8999999985

>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2

Probab=98.42  E-value=2.1e-07  Score=70.22  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             eEEEEEeCCceeeEEEec-CcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        125 LHLDVLKEDKLVQKLMLD-EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~-~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ..|....++.  ..+.|. .....+|||+|   +..+.|..|||+|+.+..+.+++.+.+.|+ ++|+|+|||+
T Consensus        17 c~L~~~~~~~--~~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~~~~v~vk~l-G~NP~~vng~   84 (119)
T 1ujx_A           17 LWLQSPTGGP--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRTVAVKQL-GVNPSTVGVQ   84 (119)
T ss_dssp             EEEECCSSSC--CCCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETTTTEEEEEEC-SSSCCBSSSS
T ss_pred             EEEEeCCCCC--CcEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecCCCEEEEEEc-ccCCcEECCE
Confidence            4565544332  367774 23458999998   345789999999999999876678999999 6799999986

>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2

Probab=98.39  E-value=5.5e-07  Score=69.74  Aligned_cols=67  Identities=15%  Similarity=0.246  Sum_probs=51.8

Q ss_pred             eEEEEEeCCceeeEEEec-CcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929        125 LHLDVLKEDKLVQKLMLD-EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~-~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~  197 (198)
                      ..|....++.  ..|.|. .....+|||+|   +..+.|..|||+|+.+..+.+++.+.+.++ ++|+|+|||.
T Consensus        10 c~L~p~d~~~--~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~~g~V~Vk~l-G~NP~~vng~   77 (143)
T 1yj5_C           10 LWLQSPTGGP--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRTVAVKQL-GVNPSTVGVH   77 (143)
T ss_dssp             EEEECCTTSC--CCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETTTTEEEEEEC-SSSCCEETTE
T ss_pred             EEEEecCCCC--CcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecCCCeEEEEEc-ccCCcEECCE
Confidence            4565544432  478885 33459999998   345889999999999999875678889999 6799999985

>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4

Probab=98.27  E-value=6.9e-07  Score=74.70  Aligned_cols=55  Identities=11%  Similarity=-0.006  Sum_probs=42.2

Q ss_pred             eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC--CeEEEEeCCCCCCe-eecCc
Q psy12929        137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL--ERAFLVDLGSILPR-ELYGV  197 (198)
Q Consensus       137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~--~~~~i~DL~StNGT-~vNg~  197 (198)
                      ..+.+..+ .++|||++ .|||+|+++ +   ||.+..+..+  +.|+|.|++|+||| ||||+
T Consensus        85 ~~y~~~~~-~itIG~~~-~~dI~l~~~-~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~  142 (238)
T 1wv3_A           85 FAYPSIQD-TMTIGPNA-YDDMVIQSL-M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYE  142 (238)
T ss_dssp             EECCSSCS-EEEEESST-TSSEECTTC-S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTE
T ss_pred             EEEecCCc-eEEEeCCC-CCeEEeCCC-e---eEEEEecccCcCCcEEEEEccCCCCCEEECCE
Confidence            34555445 69999997 899999999 3   5766654101  47999999999997 99996

>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}

Probab=98.21  E-value=4.1e-06  Score=67.56  Aligned_cols=71  Identities=20%  Similarity=0.152  Sum_probs=50.5

Q ss_pred             EEEEEeCCcee---eEEEecCcceEEeccCC--CCcceEeCCCCcCccceEEEEEccC---CeEEEEeCCCCCCeeecCc
Q psy12929        126 HLDVLKEDKLV---QKLMLDEKKCYLFGRNK--DLCDICIDHQSCSRVHAAFVYHTAL---ERAFLVDLGSILPRELYGV  197 (198)
Q Consensus       126 ~L~v~~~~~~~---~~~~l~~~~~~~iGR~~--~~~di~l~~~~vSr~Ha~i~~~~~~---~~~~i~DL~StNGT~vNg~  197 (198)
                      +|.-+..+...   -.+.|+.. ..+|||..  ..|||+|..+.|+++||.|.....+   +.+++.+. +.+.|||||+
T Consensus        70 hLvnLn~Dp~ls~~l~y~L~~g-~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a~t~VNG~  147 (184)
T 4egx_A           70 HLVNLNEDPLMSECLLYYIKDG-ITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGADTYVNGK  147 (184)
T ss_dssp             EEEECCCCTTCSSCSEEECCSE-EEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTCCEEETTE
T ss_pred             eEEeccCCcccCceEEEEECCC-cCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCCeEEEcCE
Confidence            56555443221   25777554 47999963  2589999999999999999987422   23666665 7789999997


Q ss_pred             C
Q psy12929        198 T  198 (198)
Q Consensus       198 ~  198 (198)
                      +
T Consensus       148 ~  148 (184)
T 4egx_A          148 K  148 (184)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4

Probab=82.97  E-value=4.8  Score=32.89  Aligned_cols=51  Identities=14%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             EEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEE
Q psy12929        127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL  183 (198)
Q Consensus       127 L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i  183 (198)
                      |.++.++ ....+.|+....++||++. .||+.++++   ..|+.|.+++ ++.|.+
T Consensus         4 l~i~y~~-~~~~~~L~~~~~~tiG~~~-~~~itl~~~---~~~i~l~~~~-~~~~~v   54 (238)
T 1wv3_A            4 LIIKYNK-QLKMLNLRDGKTYTISEDE-RADITLKSL---GEVIHLEQNN-QGTWQA   54 (238)
T ss_dssp             EEEEETT-EEEEEECCTTCCEEEESCT-TSSEECTTC---CCCEEEEECT-TSCEEE
T ss_pred             EEEEECC-EEEEEecCCCcEEEECCCc-cceEEecCC---CccEEEEEcc-CCeEEE
Confidence            5555443 4567888655679999997 899999988   7788887753 244554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1uhta_	118	b.26.1.2 (A:) FHA domain containing protein At4G14	5e-12
d1g6ga_	127	b.26.1.2 (A:) Phosphotyrosine binding domain of Ra	5e-09
d1dmza_	158	b.26.1.2 (A:) Phosphotyrosine binding domain of Ra	2e-07
d1mzka_	122	b.26.1.2 (A:) Kinase associated protein phosphatas	0.003

>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.1 bits (140), Expect = 5e-12
 Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 2/82 (2%)

Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
             +G     L L  +K  +    L          GR     +I I     S  H      
Sbjct: 4   GSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD 63

Query: 176 TALERAFLVDLGSILPRELYGV 197
           +      + DLGS     L   
Sbjct: 64  S--GNWVIQDLGSSNGTLLNSN 83

>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVD 185
             D+  +   V K     KK + FGRN        +    S  H   +     +   L++
Sbjct: 17  IRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE--DGNLLLN 74

Query: 186 LGS 188
             S
Sbjct: 75  DIS 77

>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 125 LHLDVLKEDKLVQKLMLDEKK-CYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183
           L L  L +  + + L + +    +  GR++D C+  I+    SRVH             +
Sbjct: 6   LTLKPLPDSIIQESLEIQQGVNPFFIGRSED-CNCKIEDNRLSRVHCFIFKKRHAVGKSM 64

Query: 184 VDLGSILPRELY 195
            +  +    +++
Sbjct: 65  YESPAQGLDDIW 76

>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinase associated protein phosphatase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 143 EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
            K     GR     D+ +     S  HA   +++   +  LVD+GS
Sbjct: 28  SKLPVKLGRVSP-SDLALKDSEVSGKHAQITWNSTKFKWELVDMGS 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1uhta_	118	FHA domain containing protein At4G14490 {Thale cre	99.8
d1mzka_	122	Kinase associated protein phosphatase {Thale cress	99.76
d2ff4a3	99	Probable regulatory protein EmbR, C-terminal domai	99.72
d2affa1	98	Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2piea1	127	Ubiquitin ligase protein RNF8 {Human (Homo sapiens	99.64
d1lgpa_	113	Cell cycle checkpoint protein Chfr {Human (Homo sa	99.62
d1dmza_	158	Phosphotyrosine binding domain of Rad53 {Baker's y	99.59
d1g6ga_	127	Phosphotyrosine binding domain of Rad53 {Baker's y	99.55
d1gxca_	116	Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2brfa1	101	Polynucleotide kinase 3'-phosphatase {Human (Homo	99.44
d1wlna1	107	Afadin {Mouse (Mus musculus) [TaxId: 10090]}	99.38
d2g1la1	102	Kinesin-like protein kif1c {Human (Homo sapiens) [	99.36

>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=3.3e-20  Score=138.82  Aligned_cols=76  Identities=20%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             CCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        121 PPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       121 p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..+.++|.+.++...++.+.|..++.++|||+...|||+|+|++|||+||+|.++  +++|+|+||+|+|||||||++
T Consensus         9 ~~p~l~L~v~~Gp~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~--~~~~~i~Dl~S~nGT~vng~~   84 (118)
T d1uhta_           9 VTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--SGNWVIQDLGSSNGTLLNSNA   84 (118)
T ss_dssp             CSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SSSEEEECCCCSSCCEESSSB
T ss_pred             CCCcEEEEEEeCCCCCcEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEE--CCEEEEEECCCcceeEECCEE
Confidence            3345789888877777889997777799999855899999999999999999987  478999999999999999974

>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinase associated protein phosphatase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=8.1e-19  Score=131.75  Aligned_cols=73  Identities=19%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             eEEEEEeCCceeeEEEecCcc----eEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        125 LHLDVLKEDKLVQKLMLDEKK----CYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~~----~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..|.|+.+...+..+.+...+    .++|||++ .||++|+||.|||+||.|.++..+++|+|.|++|+|||||||++
T Consensus         6 l~L~vi~Gp~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~~~~~~~v~DlgS~nGT~vNg~~   82 (122)
T d1mzka_           6 LFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVS-PSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHS   82 (122)
T ss_dssp             EEEEECSSTTCSCEEEECTTCSTTCSEEEESSS-SCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETTEE
T ss_pred             EEEEEEECCCCCcEEEecCCCCCcCCEEecCCC-CCCEEECCCCcCccceEEEEeCCCCEEEEeeCCCCCceEECCEE
Confidence            367788777777788875332    48999997 79999999999999999999865678999999999999999963

>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=3.2e-18  Score=124.08  Aligned_cols=59  Identities=24%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             eeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        136 VQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       136 ~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ++.+.|... .++|||++ .||++|++|.|||+||.|.++  +++++|.|++|+|||||||++
T Consensus        15 G~~~~l~~~-~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~--~~~~~i~Dl~S~nGt~vNg~~   73 (99)
T d2ff4a3          15 GRGYPLQAA-ATRIGRLH-DNDIVLDSANVSRHHAVIVDT--GTNYVINDLRSSNGVHVQHER   73 (99)
T ss_dssp             CCEEECCSS-EEEEESST-TSSEECCCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred             CCEEEECCC-CEEEeeCc-CCCEEECCccccceeEEEEEe--CCEEEEEECCCcCCCeECCEE
Confidence            468999654 58999997 799999999999999999986  478999999999999999974

>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Antigen ki-67
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-16  Score=115.02  Aligned_cols=68  Identities=25%  Similarity=0.355  Sum_probs=58.9

Q ss_pred             EEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       127 L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      +.+.++|..+..+.|... .++|||++ .|||+|+++.|||+||.|.++  +++++|.|++|+|||+|||++
T Consensus         6 i~i~~~g~~g~~~~L~~~-~~~IGr~~-~~di~l~~~~is~~Ha~i~~~--~~~~~i~d~~s~ng~~vNg~~   73 (98)
T d2affa1           6 VTIKRSGVDGPHFPLSLS-TCLFGRGI-ECDIRIQLPVVSKQHCKIEIH--EQEAILHNFSSTNPTQVNGSV   73 (98)
T ss_dssp             EEECTTSCEEEEEECCSS-EEEEESST-TSSEEECCTTSCSSBEEEEEC--SSCEEEEECCSSSCCEETTEE
T ss_pred             EEEEcCCCCceEEEECCC-CEEEeeCC-CCCEEeCCCCcCceeEEEEEe--CCEEEEEECCCcccceECCEE
Confidence            334456777889999655 59999997 899999999999999999997  478999999999999999974

>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=119.17  Aligned_cols=71  Identities=15%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             ceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC----cCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        124 GLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS----CSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       124 ~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~----vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .|.|...  |...+.+.+..++.++|||++ .||++++++.    |||+||+|.++. ++.++|+|++|+|||||||++
T Consensus         5 ~w~L~r~--g~~~~~~~l~~~~~~tiGR~~-~~~~~l~~~~~~~~VSR~Ha~i~~~~-~g~~~l~D~~S~NGt~lNg~~   79 (127)
T d2piea1           5 SWCLRRV--GMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRAR   79 (127)
T ss_dssp             EEEEEET--TCSSCBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECT-TSCEEEEECSCSSCEEETTEE
T ss_pred             eEEEEEc--cCCCCeEEcCCCCEEEeccCC-CccEEECCCCcccccchhheEEEECC-CCeEEEEECCCcCCeEECCEE
Confidence            4767543  333455666667779999997 8999999987    999999999974 567999999999999999963

>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Cell cycle checkpoint protein Chfr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-16  Score=117.26  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeC-CCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICID-HQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~-~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      +|..+.+......+.+..+ .++|||++ .||++|. +++|||+||.|.++. +++++++|++|+|||||||++
T Consensus         6 ~Li~~~~~~~~~~~~l~~~-~~~iGR~~-~~di~l~d~~~iSr~Ha~I~~~~-~~~~~~~~d~S~nGT~vNg~~   76 (113)
T d1lgpa_           6 RLLRLGAEEGEPHVLLRKR-EWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDE-KSGQVTLEDTSTSGTVINKLK   76 (113)
T ss_dssp             EECCTTCCSSSCCEEECSS-EEEEESST-TSSEECTTCTTSCTTCEEEEECT-TTCCEEEEECSSSCCCCCCCC
T ss_pred             EEEEECCCCCceEEEeCCC-CEeeCCCC-CCCeEecCCCCcChHHeEEEEcc-ceeeEEecCCCceeeEECCEE
Confidence            4434333333445777554 59999997 8999996 589999999999975 456677777799999999975

>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=8.2e-16  Score=120.08  Aligned_cols=72  Identities=19%  Similarity=0.305  Sum_probs=60.3

Q ss_pred             eEEEEEeCCceeeEEEecCc-ceEEeccCCCCcceEeCCCCcCccceEEEEEcc-------------CCeEEEEeCCCCC
Q psy12929        125 LHLDVLKEDKLVQKLMLDEK-KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA-------------LERAFLVDLGSIL  190 (198)
Q Consensus       125 ~~L~v~~~~~~~~~~~l~~~-~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~-------------~~~~~i~DL~StN  190 (198)
                      ..|.++++....+.+.|... ..|+|||++ .||++++++.|||.||.|.++..             .+.+||.|+ |+|
T Consensus         6 ~~L~~l~~~~~~~~i~i~~~~~~~~iGR~~-~~d~~i~~~~vS~~H~~I~~~~~~~~~~~~~~~~~~~~~~~l~D~-S~N   83 (158)
T d1dmza_           6 LTLKPLPDSIIQESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTN   83 (158)
T ss_dssp             EEEEECTTSSCCCCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STT
T ss_pred             EEEEEccCCCcceeEEEccCCCcEEecCCc-CccEEECCCcccCcceEEEEeccccccccccccccCCCcEEEEec-CCC
Confidence            46888877777788998653 469999997 89999999999999999998631             247899999 999


Q ss_pred             CeeecCcC
Q psy12929        191 PRELYGVT  198 (198)
Q Consensus       191 GT~vNg~~  198 (198)
                      ||||||++
T Consensus        84 Gt~vN~~~   91 (158)
T d1dmza_          84 VSYLNNNR   91 (158)
T ss_dssp             CCEETTEE
T ss_pred             CeEECCEE
Confidence            99999973

>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.5e-15  Score=114.48  Aligned_cols=53  Identities=26%  Similarity=0.310  Sum_probs=46.1

Q ss_pred             CcceEEeccCCCCcceEeC-CCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        143 EKKCYLFGRNKDLCDICID-HQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       143 ~~~~~~iGR~~~~~di~l~-~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+..|+|||++ .||++++ +|.|||+||.|.++.  ++++++|++|+|||||||++
T Consensus        34 ~~~~~~iGR~~-~~d~~l~d~~~VSr~Ha~i~~~~--~~~~~~d~~S~NGT~vNg~~   87 (127)
T d1g6ga_          34 IKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE--DGNLLLNDISTNGTWLNGQK   87 (127)
T ss_dssp             CCEEEEEESST-TSSEECCSCTTSCSSCEEEEECT--TSCEEEEECCSSCCEETTEE
T ss_pred             CCccEEEccCc-ccCccCCCcchhhHHHHHeeecc--cEEEEEECCCcceeEECCEE
Confidence            34568999998 8999996 589999999999873  67888999999999999974

>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Chk2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.3e-15  Score=109.60  Aligned_cols=68  Identities=24%  Similarity=0.318  Sum_probs=51.9

Q ss_pred             EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCC---------CcCccceEEEEEcc--CCe-EEEEeCCCCCCee
Q psy12929        126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQ---------SCSRVHAAFVYHTA--LER-AFLVDLGSILPRE  193 (198)
Q Consensus       126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~---------~vSr~Ha~i~~~~~--~~~-~~i~DL~StNGT~  193 (198)
                      +|.+...+  ...++|..+ .++|||++ .||+++++|         .|||+||+|..+..  ++. +++.|+ |+||||
T Consensus         4 rL~~~~~~--~~~~~L~~~-~~~iGR~~-~cdi~l~~~~~~~~~~~~~ISr~H~~I~~~~~~~~~~~~~i~d~-S~NGT~   78 (116)
T d1gxca_           4 RLWALQDG--FANLECVND-NYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDH-SGNGTF   78 (116)
T ss_dssp             EEEECSTT--CCCEEECSS-EEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEEC-CSSCEE
T ss_pred             EEEecCCC--CceEEeCCC-CEEeeeCC-CCCeEecCCccccccccceEecceEEEEEecccCCCCEEEEECC-CccCce
Confidence            67665444  357888655 48999998 799999997         69999999988642  233 555555 999999


Q ss_pred             ecCcC
Q psy12929        194 LYGVT  198 (198)
Q Consensus       194 vNg~~  198 (198)
                      |||++
T Consensus        79 vN~~~   83 (116)
T d1gxca_          79 VNTEL   83 (116)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            99963

>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Polynucleotide kinase 3'-phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.8e-14  Score=101.77  Aligned_cols=51  Identities=18%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             cceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        144 KKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       144 ~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ...++|||++ +|+|  .++.|||+||+|.++..++.+++.|+ |+|||||||++
T Consensus        21 ~~~~~iGR~~-~~~i--~d~~vSr~Ha~i~~~~~~~~~~v~~~-s~Ngt~vNg~~   71 (101)
T d2brfa1          21 GQALVLGRGP-LTQV--TDRKCSRTQVELVADPETRTVAVKQL-GVNPSTTGTQE   71 (101)
T ss_dssp             TCCEEECSBT-TTTB--CCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEEC-CB
T ss_pred             CCeEEcccCc-cccc--cCCCcChhheEEEeccCceeEEEEcC-CCcceEEEEEE
Confidence            3458999997 6765  69999999999998754445666666 88999999974

>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.7e-13  Score=98.99  Aligned_cols=59  Identities=12%  Similarity=-0.053  Sum_probs=50.1

Q ss_pred             eEEEecCcceEEeccCC-CCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929        137 QKLMLDEKKCYLFGRNK-DLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       137 ~~~~l~~~~~~~iGR~~-~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~  198 (198)
                      ..+.|+. ...+|||.+ +.|||+|+++.||++||.|..+  ++.+++.|++|+|||||||++
T Consensus        22 ~~~~l~~-~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~--~~~~~l~d~~s~~gt~vng~~   81 (107)
T d1wlna1          22 KLYRLQL-SVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGVVTVTPRSMDAETYVDGQR   81 (107)
T ss_dssp             CEEECCS-EEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSCEEEEESCSSSCEEETSCB
T ss_pred             EEEEECC-CCEEECCCCCCCCcEEECCcceeeeEEEEEEc--ccccEEecCCCCcceEEcccc
Confidence            4577755 458999642 3799999999999999999987  478999999999999999974

>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinesin-like protein kif1c
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.5e-13  Score=95.84  Aligned_cols=58  Identities=14%  Similarity=0.007  Sum_probs=48.5

Q ss_pred             EEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEcc--CCeEEEEeCCCCCCeeecCcC
Q psy12929        138 KLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA--LERAFLVDLGSILPRELYGVT  198 (198)
Q Consensus       138 ~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~--~~~~~i~DL~StNGT~vNg~~  198 (198)
                      .+.|++ ..++|||.  .|||+|+++.||++||+|....+  +..+++.|++|+|||||||++
T Consensus        18 ~y~l~~-~~~~iGr~--~~dI~l~~~~vs~~Ha~i~~~~~~~~~~~~i~d~~s~~gt~VNg~~   77 (102)
T d2g1la1          18 LYHIKD-GVTRVGQV--DMDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKL   77 (102)
T ss_dssp             EEECCS-EEEEEESS--SCSEECCCTTCCSEEEEEEEEECTTSCEEEEEEECTTCCEEETTEE
T ss_pred             EEEcCC-CcEECCCC--CcCEEecccceeeeeeEEEEEEcCCCcEEEEecCCCCCCeEECCeE
Confidence            466754 45899994  69999999999999999988642  236999999999999999974