Psyllid ID: psy12958

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
PKKSVEENTSLTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE
cccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHccEEEcccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
pkksveentsltkvffapvnvelSAKDIVDALSKVvntedsalRVDVQNERLKRWqglkyipkCWAVIQSFLCAlympkcednvvsvpsqevckllsgpcrivaqelspefncqngtkisshscknegrdlkfnstgqckpplvstevvasfypgvegcglqcsdplyskeehESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGwllqftpgidkedivcqrdgtlrvpgprfdlcTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE
pkksveentsltkvffapvnvelSAKDIVDALSKVvntedsalrvdvqneRLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGtlrvpgprfdLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE
PKKSVEENTSLTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE
**********LTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQ***********************QCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKE*HESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITL******
***************FAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKT**
*********SLTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE
**KSVEENTSLTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSC***GRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQE****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
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PKKSVEENTSLTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
P91682 1036 Protein smoothened OS=Dro yes N/A 0.874 0.248 0.415 1e-56
Q99835 787 Smoothened homolog OS=Hom yes N/A 0.819 0.306 0.406 2e-53
P56726 793 Smoothened homolog OS=Mus yes N/A 0.816 0.302 0.408 4e-53
P97698 793 Smoothened homolog OS=Rat yes N/A 0.816 0.302 0.408 4e-53
O42224 794 Smoothened homolog (Fragm yes N/A 0.799 0.295 0.400 9e-49
Q61089 709 Frizzled-6 OS=Mus musculu no N/A 0.721 0.299 0.217 1e-08
Q8WMU5 712 Frizzled-6 OS=Canis famil no N/A 0.721 0.297 0.221 2e-07
Q5RCN4 707 Frizzled-6 OS=Pongo abeli no N/A 0.721 0.299 0.225 3e-07
Q9ULW2 581 Frizzled-10 OS=Homo sapie no N/A 0.891 0.450 0.212 3e-07
P58421 559 Frizzled-5 OS=Xenopus lae N/A N/A 0.452 0.237 0.242 4e-07
>sp|P91682|SMO_DROME Protein smoothened OS=Drosophila melanogaster GN=smo PE=1 SV=1 Back     alignment and function desciption
 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 166/279 (59%), Gaps = 22/279 (7%)

Query: 15  FFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCA 74
           F + +  ELS+ D+ D      +TE         N++L  +  LK++PKCWA IQ FLCA
Sbjct: 101 FGSKLPYELSSLDLTD-----FHTEKEL------NDKLNDYYALKHVPKCWAAIQPFLCA 149

Query: 75  LYMPKCE----DNVVSVPSQEVCKLLSGPCRIVAQE-LSPEFNCQNGTKISSHSCKNEGR 129
           ++ PKCE    +++V +PS E+C++   PCRI+      P+F   N T   +  C N  R
Sbjct: 150 VFKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNTTFFPKFLRCNETLFPT-KCTNGAR 208

Query: 130 DLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCAL 189
            +KFN TGQC  PLV T+  AS+YPG+EGCG++C DPLY+ +EH  +   I      C L
Sbjct: 209 GMKFNGTGQCLSPLVPTDTSASYYPGIEGCGVRCKDPLYTDDEHRQIHKLIGWAGSICLL 268

Query: 190 FIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTL 249
             +  V T  I+W+  + Y  + ++ YIN+CF   C+GWLLQFT G  +EDIVC++DGTL
Sbjct: 269 SNLFVVSTFFIDWKNANKY-PAVIVFYINLCFLIACVGWLLQFTSG-SREDIVCRKDGTL 326

Query: 250 RVPGPRFD---LCTVTFVIIYWSVISGLVWFIILTYILH 285
           R   P       C V FV++Y+ + +G+VWF+ LTY  H
Sbjct: 327 RHSEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYAWH 365
Segment polarity protein required for correct patterning of every segment. G protein-coupled receptor that associates with the patched protein (ptc) to transduce the hedgehog (hh) signal through the activation of an inhibitory G-protein. In the absence of hh, ptc represses the constitutive signaling activity of smo through fused (fu).
Drosophila melanogaster (taxid: 7227)
>sp|Q99835|SMO_HUMAN Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=1 Back     alignment and function description
>sp|P56726|SMO_MOUSE Smoothened homolog OS=Mus musculus GN=Smo PE=1 SV=2 Back     alignment and function description
>sp|P97698|SMO_RAT Smoothened homolog OS=Rattus norvegicus GN=Smo PE=2 SV=1 Back     alignment and function description
>sp|O42224|SMO_CHICK Smoothened homolog (Fragment) OS=Gallus gallus GN=SMO PE=2 SV=1 Back     alignment and function description
>sp|Q61089|FZD6_MOUSE Frizzled-6 OS=Mus musculus GN=Fzd6 PE=2 SV=1 Back     alignment and function description
>sp|Q8WMU5|FZD6_CANFA Frizzled-6 OS=Canis familiaris GN=FZD6 PE=2 SV=1 Back     alignment and function description
>sp|Q5RCN4|FZD6_PONAB Frizzled-6 OS=Pongo abelii GN=FZD6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULW2|FZD10_HUMAN Frizzled-10 OS=Homo sapiens GN=FZD10 PE=2 SV=1 Back     alignment and function description
>sp|P58421|FZD5_XENLA Frizzled-5 OS=Xenopus laevis GN=fzd5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
380030387 983 PREDICTED: LOW QUALITY PROTEIN: protein 0.819 0.245 0.455 1e-60
332025120 960 Protein smoothened [Acromyrmex echinatio 0.823 0.252 0.449 2e-60
328783980 983 PREDICTED: protein smoothened [Apis mell 0.819 0.245 0.459 2e-60
383864516 1000 PREDICTED: protein smoothened-like [Mega 0.823 0.242 0.453 4e-60
307211399 1032 Protein smoothened [Harpegnathos saltato 0.819 0.233 0.453 5e-60
350398856 982 PREDICTED: protein smoothened-like [Bomb 0.816 0.244 0.455 8e-60
340712152 982 PREDICTED: protein smoothened-like [Bomb 0.816 0.244 0.451 5e-59
321469830 1093 hypothetical protein DAPPUDRAFT_318256 [ 0.836 0.225 0.447 1e-58
345493548 979 PREDICTED: protein smoothened-like [Naso 0.809 0.243 0.438 2e-57
193634190 815 PREDICTED: protein smoothened-like [Acyr 0.809 0.292 0.479 2e-57
>gi|380030387|ref|XP_003698830.1| PREDICTED: LOW QUALITY PROTEIN: protein smoothened-like [Apis florea] Back     alignment and taxonomy information
 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/248 (45%), Positives = 169/248 (68%), Gaps = 7/248 (2%)

Query: 46  DVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIV-A 104
           D+  E+L   Q L+++PKCWAV+Q  LC+++MPKC ++ V +PSQE+CK++SGPCRIV  
Sbjct: 108 DIMEEKLHVLQALRHVPKCWAVVQPLLCSIFMPKCINDTVDLPSQEMCKMVSGPCRIVFN 167

Query: 105 QELSPEF-NCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQC 163
             + P F  C+N T +    CKN+ R+LKFN + +C  PLV T+   + + GVEGCGLQC
Sbjct: 168 HTIWPSFVKCEN-TDLFXRLCKNDIRELKFNISSKCLKPLVPTDNALAIFEGVEGCGLQC 226

Query: 164 SDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFN 223
           +DP ++ +EH+ + + I   A  C  F + +++T  I+W + + Y  + VI YIN CF  
Sbjct: 227 NDPFFTPDEHKQIHSFIAWAAGICGSFNLFTIITFLIDWRSANKY-PALVIFYINCCFMV 285

Query: 224 TCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFD--LCTVTFVIIYWSVISGLVWFIILT 281
           +CIGWL QFTPG  +E IVC++DGTLR+  P  +   C V FV++Y+S+++ +VWF+ILT
Sbjct: 286 SCIGWLAQFTPG-SREVIVCRKDGTLRMSEPSGENLSCVVVFVLVYYSLMAAMVWFVILT 344

Query: 282 YILHITLQ 289
           Y  H++ Q
Sbjct: 345 YAWHMSFQ 352

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332025120|gb|EGI65300.1| Protein smoothened [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328783980|ref|XP_395373.3| PREDICTED: protein smoothened [Apis mellifera] Back     alignment and taxonomy information
>gi|383864516|ref|XP_003707724.1| PREDICTED: protein smoothened-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307211399|gb|EFN87526.1| Protein smoothened [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350398856|ref|XP_003485326.1| PREDICTED: protein smoothened-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712152|ref|XP_003394628.1| PREDICTED: protein smoothened-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|321469830|gb|EFX80809.1| hypothetical protein DAPPUDRAFT_318256 [Daphnia pulex] Back     alignment and taxonomy information
>gi|345493548|ref|XP_001602300.2| PREDICTED: protein smoothened-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|193634190|ref|XP_001949027.1| PREDICTED: protein smoothened-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
ZFIN|ZDB-GENE-980526-89 822 smo "smoothened homolog (Droso 0.860 0.307 0.412 1.9e-55
FB|FBgn0003444 1036 smo "smoothened" [Drosophila m 0.795 0.225 0.444 1.4e-54
UNIPROTKB|E1BE57 780 SMO "Uncharacterized protein" 0.816 0.307 0.408 4.8e-52
UNIPROTKB|F1SMQ3 783 SMO "Uncharacterized protein" 0.816 0.306 0.408 5.1e-52
UNIPROTKB|Q99835 787 SMO "Smoothened homolog" [Homo 0.816 0.304 0.408 5.5e-52
MGI|MGI:108075 793 Smo "smoothened homolog (Droso 0.816 0.302 0.408 1.4e-51
RGD|3726 793 Smo "smoothened, frizzled fami 0.806 0.298 0.406 1.4e-51
UNIPROTKB|P97698 793 Smo "Smoothened homolog" [Ratt 0.806 0.298 0.406 1.4e-51
UNIPROTKB|O42224 794 SMO "Smoothened homolog" [Gall 0.789 0.292 0.406 9.4e-49
UNIPROTKB|F1PEJ6 659 SMO "Uncharacterized protein" 0.710 0.317 0.389 3.8e-42
ZFIN|ZDB-GENE-980526-89 smo "smoothened homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 573 (206.8 bits), Expect = 1.9e-55, P = 1.9e-55
 Identities = 108/262 (41%), Positives = 164/262 (62%)

Query:    33 SKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEV 92
             + ++  EDS  + +   E+L  W GL+  P+CWAVIQ  LCA+YMPKCE+  V +PSQ +
Sbjct:    66 TSLILAEDSETQEEAF-EKLAMWSGLRNAPRCWAVIQPLLCAVYMPKCENGKVELPSQHL 124

Query:    93 CKLLSGPCRIVAQELS-PEF-NCQNGTKISSHSCKNEGRDLKFNSTGQCKPPLVSTEVVA 150
             C+    PC IV +E   P F  C+N  +     C+NE + LKFN++GQC+ PLV T++ A
Sbjct:   125 CQATRNPCSIVERERGWPNFLKCENKEQFPK-GCQNEVQKLKFNTSGQCEAPLVKTDIQA 183

Query:   151 SFYPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT 210
             S+Y  VEGCG+QC +PL++++EH  M + I V      L   L + T   +W+ ++ Y  
Sbjct:   184 SWYKDVEGCGIQCDNPLFTEDEHSDMHSYIAVFGTITLLCTFLHLATFLADWKNSNRY-P 242

Query:   211 SQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRV--PGPRFDL-CTVTFVIIY 267
             + ++ Y+N CFF   IGWL QF  G  + +IVC+ D T+R+  P     L C + FVI+Y
Sbjct:   243 AVILFYVNACFFIGSIGWLAQFMDGA-RNEIVCKSDNTMRLGEPSSTETLSCVIIFVIVY 301

Query:   268 WSVISGLVWFIILTYILHITLQ 289
             +S++SG++WF++LTY  H + +
Sbjct:   302 YSLMSGVIWFVMLTYAWHTSFK 323
GO:0007166 "cell surface receptor signaling pathway" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0004888 "transmembrane signaling receptor activity" evidence=IEA
GO:0007224 "smoothened signaling pathway" evidence=IEA;IMP
GO:0021508 "floor plate formation" evidence=IGI
GO:0009880 "embryonic pattern specification" evidence=IMP
GO:0010002 "cardioblast differentiation" evidence=IMP
GO:0005929 "cilium" evidence=ISS;IBA
GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IBA
GO:0017147 "Wnt-protein binding" evidence=IBA
GO:0008406 "gonad development" evidence=IBA
GO:0001649 "osteoblast differentiation" evidence=IBA
GO:0021910 "smoothened signaling pathway involved in ventral spinal cord patterning" evidence=IBA
GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IMP;IBA
GO:0021696 "cerebellar cortex morphogenesis" evidence=IBA
GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IBA
GO:0043025 "neuronal cell body" evidence=IBA
GO:0007283 "spermatogenesis" evidence=IBA
GO:0043066 "negative regulation of apoptotic process" evidence=IBA
GO:0031102 "neuron projection regeneration" evidence=IBA
GO:0003007 "heart morphogenesis" evidence=IBA
GO:0021904 "dorsal/ventral neural tube patterning" evidence=IBA
GO:0021938 "smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation" evidence=IBA
GO:0021953 "central nervous system neuron differentiation" evidence=IBA
GO:0021561 "facial nerve development" evidence=IBA
GO:0002052 "positive regulation of neuroblast proliferation" evidence=IBA
GO:0001755 "neural crest cell migration" evidence=IBA
GO:0042813 "Wnt-activated receptor activity" evidence=IBA
GO:0030165 "PDZ domain binding" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IBA
GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IBA
GO:0007368 "determination of left/right symmetry" evidence=IBA
GO:0048846 "axon extension involved in axon guidance" evidence=IBA
GO:0005886 "plasma membrane" evidence=IBA
GO:0031016 "pancreas development" evidence=IMP
GO:0021536 "diencephalon development" evidence=IGI
GO:0021587 "cerebellum morphogenesis" evidence=IMP
GO:0048557 "embryonic digestive tract morphogenesis" evidence=IMP
GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IMP
GO:0048741 "skeletal muscle fiber development" evidence=IMP
GO:0035270 "endocrine system development" evidence=IMP
GO:0007517 "muscle organ development" evidence=IMP
GO:0035143 "caudal fin morphogenesis" evidence=IMP
GO:0030182 "neuron differentiation" evidence=IMP
GO:0055002 "striated muscle cell development" evidence=IMP
GO:0021537 "telencephalon development" evidence=IMP
GO:0021798 "forebrain dorsal/ventral pattern formation" evidence=IMP
GO:0021523 "somatic motor neuron differentiation" evidence=IMP
GO:0060896 "neural plate pattern specification" evidence=IMP
GO:0007399 "nervous system development" evidence=IMP
GO:0030902 "hindbrain development" evidence=IMP
GO:0042693 "muscle cell fate commitment" evidence=IMP
GO:0030900 "forebrain development" evidence=IMP
GO:0031017 "exocrine pancreas development" evidence=IMP
GO:0048702 "embryonic neurocranium morphogenesis" evidence=IMP
GO:0048752 "semicircular canal morphogenesis" evidence=IMP
GO:0032474 "otolith morphogenesis" evidence=IMP
GO:0042472 "inner ear morphogenesis" evidence=IMP
GO:0048795 "swim bladder morphogenesis" evidence=IMP
GO:0048794 "swim bladder development" evidence=IMP
GO:0014003 "oligodendrocyte development" evidence=IMP
GO:0021520 "spinal cord motor neuron cell fate specification" evidence=IMP
GO:0031018 "endocrine pancreas development" evidence=IMP
GO:0021984 "adenohypophysis development" evidence=IMP
GO:0031076 "embryonic camera-type eye development" evidence=IDA
GO:0060844 "arterial endothelial cell fate commitment" evidence=IMP
GO:0035479 "angioblast cell migration from lateral mesoderm to midline" evidence=IMP
GO:0035912 "dorsal aorta morphogenesis" evidence=IMP
GO:0051216 "cartilage development" evidence=IMP
GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP
GO:0060956 "endocardial cell differentiation" evidence=IMP
GO:0004871 "signal transducer activity" evidence=IEA
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0004930 "G-protein coupled receptor activity" evidence=IEA
GO:0007275 "multicellular organismal development" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0009952 "anterior/posterior pattern specification" evidence=IMP
GO:0048839 "inner ear development" evidence=IMP
GO:0001947 "heart looping" evidence=IMP
GO:0003231 "cardiac ventricle development" evidence=IMP
GO:0048745 "smooth muscle tissue development" evidence=IMP
GO:0060041 "retina development in camera-type eye" evidence=IMP
GO:0030239 "myofibril assembly" evidence=IMP
GO:0001839 "neural plate morphogenesis" evidence=IMP
GO:0014033 "neural crest cell differentiation" evidence=IMP
GO:0048663 "neuron fate commitment" evidence=IMP
GO:0001570 "vasculogenesis" evidence=IMP
GO:0007411 "axon guidance" evidence=IMP
GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP
GO:0007417 "central nervous system development" evidence=IMP
GO:0021782 "glial cell development" evidence=IMP
FB|FBgn0003444 smo "smoothened" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE57 SMO "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMQ3 SMO "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q99835 SMO "Smoothened homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108075 Smo "smoothened homolog (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3726 Smo "smoothened, frizzled family receptor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P97698 Smo "Smoothened homolog" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O42224 SMO "Smoothened homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEJ6 SMO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
cd07451132 cd07451, CRD_SMO, Cysteine-rich domain of the smoo 3e-38
pfam01534 328 pfam01534, Frizzled, Frizzled/Smoothened family me 4e-15
smart00063113 smart00063, FRI, Frizzled 2e-07
pfam01392108 pfam01392, Fz, Fz domain 9e-07
cd07066119 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, 0.001
>gnl|CDD|143560 cd07451, CRD_SMO, Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein Back     alignment and domain information 
 Score =  131 bits (331), Expect = 3e-38
 Identities = 51/96 (53%), Positives = 66/96 (68%), Gaps = 3/96 (3%)

Query: 49  NERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELS 108
            E+L  W GL+ +PKCWAVIQ  LCALYMPKCE+  V +PSQE+C+   GPC+IV  E  
Sbjct: 38  QEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCENGKVELPSQEMCQATRGPCKIVENERG 97

Query: 109 -PEF-NCQNGTKISSHSCKNEGRDLKFNSTGQCKPP 142
            P+F  C N  +     CKN+ R+LKFN++GQC+ P
Sbjct: 98  WPDFLRCDN-DRFPPRGCKNDVRELKFNTSGQCESP 132

The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo. Length = 132
>gnl|CDD|216557 pfam01534, Frizzled, Frizzled/Smoothened family membrane region Back     alignment and domain information
>gnl|CDD|214498 smart00063, FRI, Frizzled Back     alignment and domain information
>gnl|CDD|201766 pfam01392, Fz, Fz domain Back     alignment and domain information
>gnl|CDD|143549 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
KOG3577|consensus 556 100.0
PF01534 328 Frizzled: Frizzled/Smoothened family membrane regi 100.0
cd07451132 CRD_SMO Cysteine-rich domain of the smoothened rec 100.0
cd07454124 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A 99.97
cd07466125 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07441126 CRD_SFRP3 Cysteine-rich domain of the secreted fri 99.97
cd07465127 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07464127 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07462127 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07449127 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07458119 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD 99.97
cd07442127 CRD_SFRP4 Cysteine-rich domain of the secreted fri 99.97
cd07460127 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of 99.96
cd07450127 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of 99.96
cd07457121 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD 99.96
cd07463127 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of 99.96
cd07456120 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD 99.96
cd07461125 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of 99.96
cd07444127 CRD_SFRP5 Cysteine-rich domain of the secreted fri 99.96
cd07448126 CRD_FZ4 Cysteine-rich Wnt-binding domain of the fr 99.96
cd07447128 CRD_Carboxypeptidase_Z Cysteine-rich domain of car 99.96
smart00063113 FRI Frizzled. Drosophila melanogaster frizzled med 99.96
cd07446128 CRD_SFRP2 Cysteine-rich domain of the secreted fri 99.96
cd07443124 CRD_SFRP1 Cysteine-rich domain of the secreted fri 99.96
cd07888122 CRD_corin_2 One of two cysteine-rich domains of th 99.96
cd07445130 CRD_corin_1 One of two cysteine-rich domains of th 99.96
cd07453135 CRD_crescent Cysteine-rich domain of the crescent 99.96
cd07452141 CRD_sizzled Cysteine-rich domain of the sizzled pr 99.95
cd07455123 CRD_Collagen_XVIII Cysteine-rich domain of the var 99.94
cd07066119 CRD_FZ CRD_domain cysteine-rich domain, also known 99.88
PF01392116 Fz: Fz domain; InterPro: IPR020067 The frizzled (f 99.82
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 98.45
cd07459135 CRD_TK_ROR_like Cysteine-rich domain of tyrosine k 97.79
cd07469147 CRD_TK_ROR_related Cysteine-rich domain of protein 96.98
cd07467142 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinas 96.96
cd07468140 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinas 96.75
PF00002 242 7tm_2: 7 transmembrane receptor (Secretin family); 96.59
KOG4193|consensus 610 96.12
PF11710201 Git3: G protein-coupled glucose receptor regulatin 93.7
KOG4564|consensus 473 83.27
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 81.19
>KOG3577|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.4e-59  Score=466.12  Aligned_cols=275  Identities=22%  Similarity=0.453  Sum_probs=237.1

Q ss_pred             eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCH
Q psy12958         13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQ   90 (294)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr   90 (294)
                      +-.|+||+|+| |+||+||.|.+|| ++||+||+||+.++++|.||++. +||+++++||||+|+|+|++  +++++|||
T Consensus        40 ~~~c~pi~i~~-C~~i~Yn~T~~PN-ll~H~tQ~ea~~~~~~f~PLv~~-~Cs~~l~~FLCS~y~P~C~~~~d~pi~PCR  116 (556)
T KOG3577|consen   40 KARCEPITIPM-CQGLGYNMTAMPN-LVGHETQEEAGLKLHQFHPLVAL-RCSPGLRFFLCSLYAPMCTEDLDRPILPCR  116 (556)
T ss_pred             cccccceeccc-cCCCCCCcccCCc-cccchhHHHhhhcccccCCcccc-ccchhhhhHhhcCCCCcCccccCcccCccH
Confidence            34799999999 6999999999999 78999999999999999999999 99999999999999999985  89999999


Q ss_pred             HHHhhhcCCcccccc---ccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC-----------ccccc------
Q psy12958         91 EVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISS---HSCKNEGRDLKFNSTGQCKPP-----------LVSTE------  147 (294)
Q Consensus        91 ~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p---~~c~~~~~~~~~n~~~~Cp~p-----------Lv~~~------  147 (294)
                      ++||++|++|+++|+   +.||+.|+|++||...   +.|+++++....+..+.++.+           +...+      
T Consensus       117 slCe~ar~~Ce~~m~~~gf~WPe~L~C~~fp~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  196 (556)
T KOG3577|consen  117 SLCEAAREGCEPLMEMFGFPWPEFLRCDKFPVPDSAGELCMGPPSEGFAISAGSAGVSVLPDFGGPGVVLAKPWSDELCQ  196 (556)
T ss_pred             HHHHHHhcccHHHHHhcCCCCCccccCCCCCCCCCccccccCCccccccCCCCCCCCCCCCCCCCCccccCCCCcccccc
Confidence            999999999999994   8999999999999875   578765443322211111110           01111      


Q ss_pred             ccccc----cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHH
Q psy12958        148 VVASF----YPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFN  223 (294)
Q Consensus       148 ~~~~y----~~~~~~C~~pC~~~~ft~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~  223 (294)
                      ++..|    +.+.++|++||++++|+++|+++++.|+++|+.+|+.+|+|+++||++|..| ||| |||||+|+++||++
T Consensus       197 ~~~~~~~~~~~~~~~C~~~C~~~~f~~~e~~~~~~~i~~~s~~c~~~tlft~ltf~~d~~r-fry-per~i~~l~~c~~~  274 (556)
T KOG3577|consen  197 NPSNFVGKESSEISNCAPPCPNPLFSRDENRFARSWIGIWSALCFLSTLFTVLTFLIDRMR-FRY-PERPIFFLSACYLI  274 (556)
T ss_pred             CccccccccccCcccCCCCCCCcccchhhhhhHHHHhhhhhhccchhhHhHHHhhccchhh-ccC-CCcchhhHHHhhhh
Confidence            22222    2345799999999999999999999999999999999999999999999777 999 99999999999999


Q ss_pred             HHHHHHHHhcCCCCCCceeecC-CCceeecCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy12958        224 TCIGWLLQFTPGIDKEDIVCQR-DGTLRVPGPRF-DLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE  294 (294)
Q Consensus       224 ~Sl~~li~~~~g~~~~~i~C~~-~~~~~~~~~~d-~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~~kw~~  294 (294)
                      ++++|++++..|  +++++|+. +.+....++++ ..|+++|+++|||+||+.+||++++++||+++++||++
T Consensus       275 ~s~~~~~~~~~g--~~~~~c~~~~~~~~~~~~~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~~kw~~  345 (556)
T KOG3577|consen  275 VSVGYLSSFVLG--SDEIACRATPARLLVQTGLENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAGLKWGE  345 (556)
T ss_pred             hccceeecccCC--CceeccCCCCCCceeecCCCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhcCcccc
Confidence            999999999999  69999995 44444555666 89999999999999999999999999999999999986

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein Back     alignment and domain information
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17 Back     alignment and domain information
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor Back     alignment and domain information
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist Back     alignment and domain information
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor Back     alignment and domain information
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor Back     alignment and domain information
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor Back     alignment and domain information
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor Back     alignment and domain information
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1 Back     alignment and domain information
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist Back     alignment and domain information
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor Back     alignment and domain information
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor Back     alignment and domain information
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9 Back     alignment and domain information
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor Back     alignment and domain information
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5 Back     alignment and domain information
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor Back     alignment and domain information
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity Back     alignment and domain information
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor Back     alignment and domain information
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family Back     alignment and domain information
>smart00063 FRI Frizzled Back     alignment and domain information
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity Back     alignment and domain information
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity Back     alignment and domain information
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease Back     alignment and domain information
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease Back     alignment and domain information
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein Back     alignment and domain information
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein Back     alignment and domain information
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ) Back     alignment and domain information
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain Back     alignment and domain information
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors Back     alignment and domain information
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors Back     alignment and domain information
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1 Back     alignment and domain information
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2 Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
1ijy_A130 Frizzled homolog 8; WNT receptor, frizzled protein 1e-04
1ijx_A127 Secreted frizzled-related sequence protein 3; WNT 3e-04
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1 Length = 130 Back     alignment and structure
 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 49  NERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSV--PSQEVCKLLSGPCRIVAQE 106
              + ++  L  I +C   ++ FLC++Y P C ++      P + VC+     C  + ++
Sbjct: 41  GLEVHQFWPLVEI-QCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQ 99

Query: 107 LS----PEFNCQN 115
                     C  
Sbjct: 100 YGFAWPDRMRCDR 112
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1 Length = 127 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
1ijx_A127 Secreted frizzled-related sequence protein 3; WNT 99.95
1ijy_A130 Frizzled homolog 8; WNT receptor, frizzled protein 99.95
3hkl_A197 Muscle, skeletal receptor tyrosine protein kinase; 97.69
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 89.75
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 81.43
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 81.09
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1 Back     alignment and structure
Probab=99.95  E-value=1.7e-29  Score=208.14  Aligned_cols=105  Identities=21%  Similarity=0.315  Sum_probs=96.4

Q ss_pred             eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCC---CCCCCC
Q psy12958         13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDN---VVSVPS   89 (294)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~---~~i~PC   89 (294)
                      ...|+||.++| |+|++||.|.+|| ++||+||+||+.+++.|.+|++. +||+++++||||+|+|+|.++   ++++||
T Consensus         2 ~~~C~pi~~~~-C~~l~Yn~T~~PN-~lgh~~q~ea~~~~~~f~~Lv~~-~C~~~l~~FlCs~~~P~C~~~~~~~~i~PC   78 (127)
T 1ijx_A            2 SAACEPVRIPL-CKSLPWEMTKMPN-HLHHSTQANAILAMEQFEGLLGT-HCSPDLLFFLCAMYAPICTIDFQHEPIKPC   78 (127)
T ss_dssp             -CCCEECCCGG-GGGSSCCEECSSC-TTCCSSHHHHHHHHHTTHHHHTT-TCCTTHHHHHHHHHSCBCBSSCSSSCCCBC
T ss_pred             CCccccCChhH-hCCCCCCeeECCC-cCCCcCHHHHHHHHHHHHHHHcc-CcCHHHHhhhhhccCCcccCCCCCcccCcc
Confidence            35799999999 5999999998887 58999999999999999999998 999999999999999999863   789999


Q ss_pred             HHHHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958         90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS  120 (294)
Q Consensus        90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~  120 (294)
                      |++||++|++|+++|.   +.||+.|+|++||..
T Consensus        79 RslCe~vr~~C~~~~~~~g~~WP~~l~C~~fP~~  112 (127)
T 1ijx_A           79 KSVCERARQGCEPILIKYRHSWPESLACDELPVY  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCGGGCGGGCCCT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcCccccCCCC
Confidence            9999999999999984   789999999998764
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1 Back     alignment and structure
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d1ijxa_125 a.141.1.1 (A:) Secreted Frizzled-related protein 3 0.004
>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3 (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure

class: All alpha proteins
fold: Frizzled cysteine-rich domain
superfamily: Frizzled cysteine-rich domain
family: Frizzled cysteine-rich domain
domain: Secreted Frizzled-related protein 3 (SFRP-3;fzb)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 64  CWAVIQSFLCALYMPKCEDNVVSV---PSQEVCKLLSGPCRIVAQELSPE----FNC 113
           C   +  FLCA+Y P C  +       P + VC+     C  +  +          C
Sbjct: 48  CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLAC 104

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d1ijya_122 Frizzled 8 (FZ8) {Mouse (Mus musculus) [TaxId: 100 99.92
d1ijxa_125 Secreted Frizzled-related protein 3 (SFRP-3;fzb) { 99.91
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 82.41
>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Frizzled cysteine-rich domain
superfamily: Frizzled cysteine-rich domain
family: Frizzled cysteine-rich domain
domain: Frizzled 8 (FZ8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.4e-27  Score=189.02  Aligned_cols=105  Identities=19%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCH
Q psy12958         13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQ   90 (294)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr   90 (294)
                      |..|+||.+++ |+|++||.|.+||. +||.+|+||..++..|.+|++. +||+++++|+|++|+|+|++  +.+++|||
T Consensus         1 ~~~C~pi~~~~-C~~l~Yn~T~~PN~-~~h~~~~e~~~~~~~~~~l~~~-~C~~~l~~flCs~~~P~C~~~~~~~~~PCr   77 (122)
T d1ijya_           1 ELACQEITVPL-CKGIGYEYTYMPNQ-FNHDTQDEAGLEVHQFWPLVEI-QCSPDLKFFLCSMYTPICLEDYKKPLPPCR   77 (122)
T ss_dssp             CCCCEECCCGG-GTTSSCCEECSSCT-TCCCSHHHHHHHHGGGHHHHHH-TSCTTHHHHHHHHHSCBCCSSCCSCCCBCH
T ss_pred             CCeeeecChhh-hCCCCCCceECcCc-ccCcCHHHHHHHHHHHhhhhcc-ccCHhHHHHHhhhccCcccCCCCCccCccH
Confidence            35699999999 59999999988885 7999999999999999999998 99999999999999999976  45789999


Q ss_pred             HHHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958         91 EVCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS  120 (294)
Q Consensus        91 ~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~  120 (294)
                      ++|++++++|++++.   ..||+.++|++||+.
T Consensus        78 s~Ceev~~~C~~~~~~~~~~wP~~l~C~~fP~~  110 (122)
T d1ijya_          78 SVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQ  110 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCGGGCGGGSCCS
T ss_pred             HHHHHHHhhhHHHHHHcCCCCCCcCChhhCCCC
Confidence            999999999999874   689999999998753
>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3 (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure