Psyllid ID: psy12978

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MEQQTCFAQWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR
Secondary Structure (PSIPRED)
ccccHHHHHHcccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccEEEEEEEHHHHEEcccccHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccEEEcccccHHHHHHccccHHHHcccccccccccccc
Coil and Loop (DISEMBL)
meqqtcfaqwtSSVYKISFSFQYFMELDNVTESSMKILNVEfssvnpqqaegedELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLfpssvsfsaACDEEWRRMAVAAAQETQrllspgmpgmatqlrtptatplgaplilspripaiptsaasllngspggqlmnpadahqliytpyadyanyaaltgspllteyasadhsgglyvr
Flexible Loop (DISEMBL)
meqqtcfaqwtsSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEyasadhsgglyvr
Low Complexity Region (SEG)
MEQQTCFAQWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR
Disordered region (IsUnstruct)
****TCFAQWTSSVYKISFSFQYFMELDNVTESSMKILNVE*******************LMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAA*****************************PLILS*************************ADAHQLIYTPYADYANYAALTGSPLLTEYA***********
Disordered Region (DISOPRED)
****TC**QWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQQAE*EDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAAC**************************************GAPLILSPRI*******************MNPADAHQLIYTPYADYANYAALTGSPLLTEYASADH*G**Y**
Disordered Region (DISEMBL)
MEQQTCFAQWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSV**********LKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR
Disordered Region (DISPRO)
***QTCFAQWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQ*AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHS**LY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQQTCFAQWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
O01367	405	Protein held out wings OS	yes	N/A	0.642	0.333	0.550	6e-29
Q6IRN2	342	Protein quaking-B OS=Xeno	N/A	N/A	0.495	0.304	0.436	6e-09
Q32NN2	341	Protein quaking-A OS=Xeno	N/A	N/A	0.490	0.302	0.436	8e-09
Q5W9D5	341	Protein quaking OS=Sus sc	yes	N/A	0.476	0.293	0.408	1e-08
Q9QYS9	341	Protein quaking OS=Mus mu	yes	N/A	0.476	0.293	0.408	1e-08
Q96PU8	341	Protein quaking OS=Homo s	yes	N/A	0.476	0.293	0.408	1e-08
Q5W9D6	341	Protein quaking OS=Equus	yes	N/A	0.476	0.293	0.408	1e-08
Q7JJZ8	341	Protein quaking OS=Felis	N/A	N/A	0.476	0.293	0.408	1e-08
Q9GMY1	341	Protein quaking OS=Canis	yes	N/A	0.476	0.293	0.408	1e-08
Q5W9D7	341	Protein quaking OS=Bos ta	yes	N/A	0.476	0.293	0.408	1e-08

>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 104/158 (65%), Gaps = 23/158 (14%)

Query: 49  QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAV 108
           QAEGEDELKKRQLMELAIINGTYRD  AK +                 A CDEEWRR+  
Sbjct: 237 QAEGEDELKKRQLMELAIINGTYRDTTAKSV-----------------AVCDEEWRRL-- 277

Query: 109 AAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMN 168
            AA +++ L S G+PG+A Q+R P A PLGAPLIL+PR+  +PT+AAS+L+         
Sbjct: 278 VAASDSRLLTSTGLPGLAAQIRAPAAAPLGAPLILNPRM-TVPTTAASILSAQAAPTAAF 336

Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGG 206
               H +I+ PY DYANYAAL G+PLLTEY  ADHS G
Sbjct: 337 DQTGHGMIFAPY-DYANYAALAGNPLLTEY--ADHSVG 371

Required for integrin-mediated cell-adhesion in wing blade. Vital role in steroid regulation of muscle development and to control heart rate. Required during embryogenesis, in late stages of somatic muscle development, for myotube migration and during metamorphosis for muscle reorganization.
Drosophila melanogaster (taxid: 7227)

>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 66/133 (49%), Gaps = 29/133 (21%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A   +  R+   
Sbjct: 184 AEGEDSLKKMQLMELAILNGTYRDANLKSPALA------------FSLAATAQAPRIITG 231

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS--PGGQLM 167
            A        P +P  A  LRTP  TP G  L+  P I  I T A  + NG+  P   LM
Sbjct: 232 PA--------PVLPPAA--LRTP--TPAGPTLM--PLIRQIQT-ATVMPNGTPHPTATLM 276

Query: 168 NPADAHQLIYTPY 180
           + A    LIYTPY
Sbjct: 277 SQAPEAGLIYTPY 289

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of some pre-mRNA. Acts as a translational repressor.

Xenopus laevis (taxid: 8355)

>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 65/133 (48%), Gaps = 30/133 (22%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A   +  R+   
Sbjct: 184 AEGEDSLKKMQLMELAILNGTYRDANLKSPALA------------FSLAATGQAPRIITG 231

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPG--GQLM 167
            A     +LSP        LRTP  TP G  L+  P I  I T  A + NG+P     LM
Sbjct: 232 PAP----VLSPA------ALRTP--TPAGHTLM--PLIRQIQT--AVMPNGTPHPTATLM 275

Query: 168 NPADAHQLIYTPY 180
             A    LIYTPY
Sbjct: 276 QQAPEGGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of some pre-mRNA. Acts as a translational repressor (By similarity). Essential for notochord development.

Xenopus laevis (taxid: 8355)

>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Sus scrofa (taxid: 9823)

>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Also required for visceral endoderm function and blood vessel development. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation, as well as cellular processes including apoptosis, cell cycle, glial cell fate and development. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Isoform 1 is involved in regulation of mRNA splicing of MAG pre-mRNA by acting as a negative regulator of MAG exon 12 alternative splicing. Isoform 3 can induce apoptosis, while heterodimerization with other isoforms results in nuclear translocation of isoform 3 and suppression of apoptosis. Isoform 4 acts as a translational repressor for GLI1. May also play a role in smooth muscle development.

Mus musculus (taxid: 10090)

>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B. Regulator of oligodendrocyte differentiation and maturation in the brain that may play a role in myelin and oligodendrocyte dysfunction in schizophrenia. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Homo sapiens (taxid: 9606)

>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Equus caballus (taxid: 9796)

>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Felis catus (taxid: 9685)

>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Canis familiaris (taxid: 9615)

>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           AEGED LKK QLMELAI+NGTYRD N K  A A            FS A          A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220

Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
            AQ   R+++   P +P  A  LRTPT A P   PLI            A + NG+P   
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271

Query: 164 GQLMNPADAHQLIYTPY 180
             ++ P     LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
270002790	318	held out wings [Tribolium castaneum]	0.685	0.452	0.687	2e-53
282392017	340	held out wings [Tribolium castaneum]	0.680	0.420	0.679	4e-51
332024057	215	Protein held out wings [Acromyrmex echin	0.661	0.646	0.697	2e-50
380022441	188	PREDICTED: protein held out wings-like,	0.666	0.744	0.680	2e-49
307181228	214	Protein held out wings [Camponotus flori	0.657	0.644	0.697	4e-49
242022033	338	KH-domain protein, putative [Pediculus h	0.628	0.390	0.697	1e-48
383857591	335	PREDICTED: protein held out wings-like i	0.638	0.4	0.687	2e-47
307192068	315	Protein held out wings [Harpegnathos sal	0.633	0.422	0.694	1e-46
345489230	300	PREDICTED: protein held out wings-like [	0.642	0.45	0.658	2e-44
383857593	333	PREDICTED: protein held out wings-like i	0.628	0.396	0.656	3e-44

>gi|270002790|gb|EEZ99237.1| held out wings [Tribolium castaneum]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/163 (68%), Positives = 130/163 (79%), Gaps = 19/163 (11%)

Query: 49  QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAV 108
           QA+GEDELKKRQLMELAIINGTYRD+++K ++A                ACDEEWRR+A 
Sbjct: 174 QADGEDELKKRQLMELAIINGTYRDSSSKAVSAT---------------ACDEEWRRVAA 218

Query: 109 AAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLM 167
           AAA ETQRLLSP +PG+AT LRTP ATPLGAPLILSPR+ ++PT+AAS+LNGS P G L+
Sbjct: 219 AAA-ETQRLLSPAIPGLATPLRTP-ATPLGAPLILSPRM-SVPTTAASILNGSAPPGSLL 275

Query: 168 NPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR 210
           +P D H LIYTPYADY NYAAL  SPLLTEYA+ADHSGGL+ R
Sbjct: 276 SPGDPHGLIYTPYADYTNYAALAASPLLTEYATADHSGGLFAR 318

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282392017|ref|NP_001164152.1| held out wings [Tribolium castaneum]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/162 (67%), Positives = 127/162 (78%), Gaps = 19/162 (11%)

Query: 49  QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAV 108
           QA+GEDELKKRQLMELAIINGTYRD+++K ++A                ACDEEWRR+A 
Sbjct: 174 QADGEDELKKRQLMELAIINGTYRDSSSKAVSAT---------------ACDEEWRRVAA 218

Query: 109 AAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLM 167
           AAA ETQRLLSP +PG+AT LRTP ATPLGAPLILSPR+ ++PT+AAS+LNGS P G L+
Sbjct: 219 AAA-ETQRLLSPAIPGLATPLRTP-ATPLGAPLILSPRM-SVPTTAASILNGSAPPGSLL 275

Query: 168 NPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYV 209
           +P D H LIYTPYADY NYAAL  SPLLTEYA+ADHSG   V
Sbjct: 276 SPGDPHGLIYTPYADYTNYAALAASPLLTEYATADHSGAAAV 317

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024057|gb|EGI64274.1| Protein held out wings [Acromyrmex echinatior]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 23/162 (14%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           A+GEDELKKRQLMELAIINGTYRD+N KV AAA               ACDEEWRR+A A
Sbjct: 76  ADGEDELKKRQLMELAIINGTYRDSNTKVAAAA---------------ACDEEWRRVAAA 120

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLMN 168
           AA ETQRLL    PG+AT +RTP+A PLGAPLILSPRI ++PT+AASLLNGS P G L++
Sbjct: 121 AA-ETQRLL----PGLATPMRTPSA-PLGAPLILSPRI-SVPTTAASLLNGSGPPGSLLS 173

Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR 210
             D H LIYTPYADYANYAAL  SPLLTEYA+ADHSGGL+ R
Sbjct: 174 AGDPHGLIYTPYADYANYAALAASPLLTEYATADHSGGLFAR 215

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022441|ref|XP_003695054.1| PREDICTED: protein held out wings-like, partial [Apis florea]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 125/163 (76%), Gaps = 23/163 (14%)

Query: 49  QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAV 108
           QA+GEDELKKRQLMELAIINGTYRD+N KV AA                ACDEEWRR+A 
Sbjct: 48  QADGEDELKKRQLMELAIINGTYRDSNTKVAAAT---------------ACDEEWRRVAA 92

Query: 109 AAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLM 167
           AAA ETQRLL    PG+AT +RTP+A PLGAPLILSPRI ++PT+AASLLNGS P G L+
Sbjct: 93  AAA-ETQRLL----PGLATPMRTPSA-PLGAPLILSPRI-SVPTTAASLLNGSGPPGSLL 145

Query: 168 NPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR 210
           +  D H LIYTPYADYANYAAL  SPLLT+Y +ADHSGGL+ R
Sbjct: 146 SAGDPHGLIYTPYADYANYAALAASPLLTDYTAADHSGGLFAR 188

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181228|gb|EFN68925.1| Protein held out wings [Camponotus floridanus]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 24/162 (14%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           A+GEDELKKRQLMELAIINGTYRD+N KV AAA               ACDEEWRR+A A
Sbjct: 76  ADGEDELKKRQLMELAIINGTYRDSNTKVAAAA---------------ACDEEWRRVAAA 120

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLMN 168
           AA ETQRLL    PG+AT +RTP+A PLGAPLILSPRI ++PT+AASLLNGS P G L++
Sbjct: 121 AA-ETQRLL----PGLATPMRTPSA-PLGAPLILSPRI-SVPTTAASLLNGSGPPGSLLS 173

Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYVR 210
             D H LIYTPYADYANYAAL  SPLLTEYA+ADHSGGL+ R
Sbjct: 174 AGDPHGLIYTPYADYANYAAL-ASPLLTEYATADHSGGLFAR 214

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022033|ref|XP_002431446.1| KH-domain protein, putative [Pediculus humanus corporis] gi|212516734|gb|EEB18708.1| KH-domain protein, putative [Pediculus humanus corporis]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 118/149 (79%), Gaps = 17/149 (11%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           A+GEDELKKRQLMELAIINGTYRD+NAKV A A               ACDEEWRR+AV+
Sbjct: 175 ADGEDELKKRQLMELAIINGTYRDSNAKVAAVA---------------ACDEEWRRLAVS 219

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNP 169
           AA ETQRLLSP MPG+ T LR+P ATPLGAPLI+SPR+P +PT+AASLLNG+  G L++P
Sbjct: 220 AAAETQRLLSPAMPGLGTPLRSP-ATPLGAPLIISPRLP-VPTTAASLLNGTGTGPLLSP 277

Query: 170 ADAHQLIYTPYADYANYAALTGSPLLTEY 198
           A+   LIYTPYADYANYAAL  SPLLTEY
Sbjct: 278 AEHPGLIYTPYADYANYAALATSPLLTEY 306

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857591|ref|XP_003704288.1| PREDICTED: protein held out wings-like isoform 1 [Megachile rotundata]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 121/157 (77%), Gaps = 23/157 (14%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           A+GEDELKKRQLMELAIINGTYRD+N KV AA+               ACDEEWRR+A A
Sbjct: 175 ADGEDELKKRQLMELAIINGTYRDSNTKVAAAS---------------ACDEEWRRVAAA 219

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLMN 168
           AA ETQRLL    PG+AT +RTP+A PLGAPLILSPRI ++PT+AASLLNGS P G L++
Sbjct: 220 AA-ETQRLL----PGLATPMRTPSA-PLGAPLILSPRI-SVPTTAASLLNGSGPPGSLLS 272

Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSG 205
             D H LIYTPYADYANYAAL  SPLLTEY +ADHSG
Sbjct: 273 AGDPHGLIYTPYADYANYAALAASPLLTEYTTADHSG 309

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192068|gb|EFN75427.1| Protein held out wings [Harpegnathos saltator]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/157 (69%), Positives = 121/157 (77%), Gaps = 24/157 (15%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           A+GEDELKKRQLMELAIINGTYRD+N KV AA               AACDEEWRR+A A
Sbjct: 133 ADGEDELKKRQLMELAIINGTYRDSNTKVAAA---------------AACDEEWRRVAAA 177

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLMN 168
           AA ETQRLL    PG+AT +RTP+ TPLGAPLILSPRI ++PT+AASLLNGS P G L++
Sbjct: 178 AA-ETQRLL----PGLATPIRTPS-TPLGAPLILSPRI-SVPTTAASLLNGSGPPGSLLS 230

Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSG 205
             D H LIYTPY DYANYAAL  SPLLTEYA+ADHSG
Sbjct: 231 AGDPHGLIYTPY-DYANYAALAASPLLTEYATADHSG 266

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489230|ref|XP_001604343.2| PREDICTED: protein held out wings-like [Nasonia vitripennis]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 116/158 (73%), Gaps = 23/158 (14%)

Query: 49  QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAV 108
           QA+GEDELKKRQLMELAIINGTYRD+N KV AA                ACDEEWRR+A 
Sbjct: 139 QADGEDELKKRQLMELAIINGTYRDSNTKVAAAT---------------ACDEEWRRVAA 183

Query: 109 AAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLM 167
           AAA E+QRLL    PG+   +R   A PLGAPLILSPRI ++PT+AASLLNGS P G L+
Sbjct: 184 AAA-ESQRLL----PGLGQPMRAQNA-PLGAPLILSPRI-SVPTTAASLLNGSGPPGSLL 236

Query: 168 NPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSG 205
           +  D H LIY PYADYANYAAL  SPLLTEYA+ADHSG
Sbjct: 237 SAGDPHGLIYAPYADYANYAALASSPLLTEYATADHSG 274

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857593|ref|XP_003704289.1| PREDICTED: protein held out wings-like isoform 2 [Megachile rotundata]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/157 (65%), Positives = 117/157 (74%), Gaps = 25/157 (15%)

Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
           A+GEDELKKRQLMELAIINGTYR+ N                 ++   ACDEEWRR+A A
Sbjct: 175 ADGEDELKKRQLMELAIINGTYREFN-----------------INCVLACDEEWRRVAAA 217

Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS-PGGQLMN 168
           AA ETQRLL    PG+AT +RTP+A PLGAPLILSPRI ++PT+AASLLNGS P G L++
Sbjct: 218 AA-ETQRLL----PGLATPMRTPSA-PLGAPLILSPRI-SVPTTAASLLNGSGPPGSLLS 270

Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSG 205
             D H LIYTPYADYANYAAL  SPLLTEY +ADHSG
Sbjct: 271 AGDPHGLIYTPYADYANYAALAASPLLTEYTTADHSG 307

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
FB|FBgn0264491	405	how "held out wings" [Drosophi	0.495	0.256	0.545	1.7e-38
UNIPROTKB|J9NVZ6	286	QKI "Protein quaking" [Canis l	0.271	0.199	0.508	2.2e-10
UNIPROTKB|F1PLY2	310	QKI "Protein quaking" [Canis l	0.271	0.183	0.508	3.1e-10
UNIPROTKB|F1SBW4	311	QKI "Protein quaking" [Sus scr	0.271	0.183	0.508	3.1e-10
UNIPROTKB|F1N7N1	315	QKI "Protein quaking" [Bos tau	0.271	0.180	0.508	3.3e-10
UNIPROTKB|D4A2X0	338	Qk "Protein Qk" [Rattus norveg	0.271	0.168	0.508	4.4e-10
UNIPROTKB|F1PX61	339	QKI "Protein quaking" [Canis l	0.271	0.168	0.508	4.4e-10
UNIPROTKB|Q5W9D7	341	QKI "Protein quaking" [Bos tau	0.271	0.167	0.508	4.5e-10
UNIPROTKB|Q9GMY1	341	QKI "Protein quaking" [Canis l	0.271	0.167	0.508	4.5e-10
UNIPROTKB|Q96PU8	341	QKI "Protein quaking" [Homo sa	0.271	0.167	0.508	4.5e-10

FB|FBgn0264491 how "held out wings" [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 60/110 (54%), Positives = 76/110 (69%)

Query:    97 AACDEEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAAS 156
             A CDEEWRR+   AA +++ L S G+PG+A Q+R P A PLGAPLIL+PR+  +PT+AAS
Sbjct:   268 AVCDEEWRRLV--AASDSRLLTSTGLPGLAAQIRAPAAAPLGAPLILNPRM-TVPTTAAS 324

Query:   157 LLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGG 206
             +L+             H +I+ PY DYANYAAL G+PLLTEYA  DHS G
Sbjct:   325 ILSAQAAPTAAFDQTGHGMIFAPY-DYANYAALAGNPLLTEYA--DHSVG 371

GO:0007525 "somatic muscle development" evidence=IMP

GO:0005634 "nucleus" evidence=IC;NAS;IDA

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0007521 "muscle cell fate determination" evidence=IDA

GO:0007155 "cell adhesion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0003729 "mRNA binding" evidence=NAS;IDA

GO:0007498 "mesoderm development" evidence=IEP

GO:0030154 "cell differentiation" evidence=TAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0007438 "oenocyte development" evidence=IMP

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007284 "spermatogonial cell division" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

UNIPROTKB|J9NVZ6 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   104 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 160

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PLY2 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   133 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 189

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1SBW4 QKI "Protein quaking" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   134 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 190

GO:0042759 "long-chain fatty acid biosynthetic process" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1N7N1 QKI "Protein quaking" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   133 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 189

GO:0042759 "long-chain fatty acid biosynthetic process" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|D4A2X0 Qk "Protein Qk" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   159 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PX61 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   162 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 218

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q5W9D7 QKI "Protein quaking" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   159 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9GMY1 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   159 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q96PU8 QKI "Protein quaking" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 29/57 (50%), Positives = 33/57 (57%)

Query:    26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 82
             +  N  E  +K    E   +    AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   159 DAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0042759 "long-chain fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O01367	HOW_DROME	No assigned EC number	0.5506	0.6428	0.3333	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	210
cd02395	120	cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho	4e-06

>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 47  PQQAEGEDELKKRQLMELAIINGTYR 72
           P    G DELK+ QL ELA++NGTYR
Sbjct: 95  PAIEGGNDELKREQLRELALLNGTYR 120

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
cd02395	120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	99.25
KOG1588|consensus	259		99.21
KOG0119|consensus	554		98.8
COG5176	269	MSL5 Splicing factor (branch point binding protein	98.04

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

Probab=99.25  E-value=7.4e-12  Score=98.95  Aligned_cols=52  Identities=33%  Similarity=0.519  Sum_probs=47.7

Q ss_pred             EeeehhcchhHHHHHHHHHHHhhhcCCCCCcC-chHHHHHHHHHHHHHhcccc
Q psy12978         21 FQYFMELDNVTESSMKILNVEFSSVNPQQAEG-EDELKKRQLMELAIINGTYR   72 (210)
Q Consensus        21 ~~~f~D~qn~ae~kLkkAve~I~~LLvP~pEg-~DeLKR~QLrELAiLNGTyR   72 (210)
                      -|+++...+.+++++++|++.|++||.+..++ .|+|||+||||||++|||||
T Consensus        68 lhV~I~a~~~~~e~~~~A~~~I~~ll~~~~~~~~~~~k~~ql~~la~~nGt~~  120 (120)
T cd02395          68 LHVLITAETPPEEALAKAVEAIEELLKPAIEGGNDELKREQLRELALLNGTYR  120 (120)
T ss_pred             cEEEEEeCCcHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHhcccCC
Confidence            67777777778999999999999999988776 99999999999999999997

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.

>KOG1588|consensus

Probab=99.21  E-value=1.2e-11  Score=109.88  Aligned_cols=57  Identities=28%  Similarity=0.380  Sum_probs=47.7

Q ss_pred             EEeeehhc---chhHHHHHHHHHHHhhhcCCCCCcCchHHHHHHHHHHHHHhccccCCCchh
Q psy12978         20 SFQYFMEL---DNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKV   78 (210)
Q Consensus        20 ~~~~f~D~---qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyRe~~~~~   78 (210)
                      -.||.+++   .+++.++|.+|+|+|+++|+|.+|++|  ||+||||||+|||||+.+..++
T Consensus       160 pLHVlIe~~~p~~ea~~rl~~AleeI~klL~P~~e~~d--k~~QL~ELa~lngt~~~~~~~~  219 (259)
T KOG1588|consen  160 PLHVLIETEAPPAEAYARLAYALEEIKKLLVPDHEDED--KREQLRELAILNGTYLRSESRK  219 (259)
T ss_pred             CcEEEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCch--HHHHHHHHhhcCCccccccccc
Confidence            35666555   489999999999999999999999999  9999999999999955444433

>KOG0119|consensus

Probab=98.80  E-value=2.9e-09  Score=102.28  Aligned_cols=54  Identities=30%  Similarity=0.392  Sum_probs=48.5

Q ss_pred             eeehhcchhHHHHHHHHHHHhhhcC---CCCCcCchHHHHHHHHHHHHHhccccCCC
Q psy12978         22 QYFMELDNVTESSMKILNVEFSSVN---PQQAEGEDELKKRQLMELAIINGTYRDNN   75 (210)
Q Consensus        22 ~~f~D~qn~ae~kLkkAve~I~~LL---vP~pEg~DeLKR~QLrELAiLNGTyRe~~   75 (210)
                      -.|..+...+++|||+|++.|++|+   |.++|++|+|||.||||||.+|||+|+++
T Consensus       204 pLH~~Isadt~eki~~Ai~vienli~~av~~~e~~n~l~~~Qlrela~lNgt~r~~d  260 (554)
T KOG0119|consen  204 PLHCLISADTQEKIKKAIAVIENLIQSAVSVPEGQNDLKRLQLRELARLNGTLRDDD  260 (554)
T ss_pred             ceeEEEecchHHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHHhCCCCCccc
Confidence            3455566778899999999999999   58999999999999999999999999988

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]

Probab=98.04  E-value=3.9e-06  Score=74.92  Aligned_cols=52  Identities=27%  Similarity=0.303  Sum_probs=40.7

Q ss_pred             eehhcchhHHHHHHHHHHHhhhcC---CCCCcCchHHHHHHHHHHHHHhccccCC
Q psy12978         23 YFMELDNVTESSMKILNVEFSSVN---PQQAEGEDELKKRQLMELAIINGTYRDN   74 (210)
Q Consensus        23 ~f~D~qn~ae~kLkkAve~I~~LL---vP~pEg~DeLKR~QLrELAiLNGTyRe~   74 (210)
                      .|-+++...+.|+.++..-+...+   +.+|||+|||||-||++||-+|||+|++
T Consensus       215 lhcLI~adsedki~~~ik~~~n~I~~a~~~PeGqnDlkR~qlr~la~lngtlr~d  269 (269)
T COG5176         215 LHCLIEADSEDKICRLIKSQLNAIREARRNPEGQNDLKRFQLRWLAHLNGTLRAD  269 (269)
T ss_pred             HHHHhhcchhhhHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHhcceecCC
Confidence            344556677777777755444444   6789999999999999999999999975

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2bl5_A	140	Solution Structure Of The Kh-Qua2 Region Of The Xen		7e-06

>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 50  AEGEDELKKRQLMELAIINGTYRDNNAK 77
           AEGED LKK +LMELAI+NGTYRD N K
Sbjct: 103 AEGEDSLKKMKLMELAILNGTYRDANLK 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1k1g_A	131	SF1-BO isoform; splicing, branch point sequence, p	1e-09
2bl5_A	140	MGC83862 protein, quaking protein; STAR proteins,	4e-09

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 51  EGEDELKKRQLMELAIINGTYRDNNAK 77
           E +++L+K QL ELA +NGT R+++ +
Sbjct: 105 EDQNDLRKMQLRELARLNGTLREDDNR 131

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 51  EGEDELKKRQLMELAIINGTYRDNNAK 77
           EGED LKK +LMELAI+NGTYRD N K
Sbjct: 104 EGEDSLKKMKLMELAILNGTYRDANLK 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2bl5_A	140	MGC83862 protein, quaking protein; STAR proteins,	99.56
1k1g_A	131	SF1-BO isoform; splicing, branch point sequence, p	99.44
2yqr_A	119	KIAA0907 protein; structure genomics, KH domain, s	87.12

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1

Probab=99.56  E-value=5.1e-16  Score=124.87  Aligned_cols=55  Identities=49%  Similarity=0.584  Sum_probs=50.7

Q ss_pred             hcchhHHHHHHHHHHHhhhcCCCCCcCchHHHHHHHHHHHHHhccccCCCchhhH
Q psy12978         26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLA   80 (210)
Q Consensus        26 D~qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyRe~~~~~~a   80 (210)
                      |.++++..+|++|+++|++||+|++|++|++||+||||||+||||||+++....+
T Consensus        79 ~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~~~  133 (140)
T 2bl5_A           79 DAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPA  133 (140)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSCTT
T ss_pred             CchhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccchh
Confidence            5568899999999999999999999999999999999999999999998876654

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=99.44  E-value=3e-14  Score=112.33  Aligned_cols=54  Identities=24%  Similarity=0.407  Sum_probs=42.8

Q ss_pred             EeeehhcchhHHHHHHHHHHHhhhcCC---CCCcCchHHHHHHHHHHHHHhccccCCCc
Q psy12978         21 FQYFMELDNVTESSMKILNVEFSSVNP---QQAEGEDELKKRQLMELAIINGTYRDNNA   76 (210)
Q Consensus        21 ~~~f~D~qn~ae~kLkkAve~I~~LLv---P~pEg~DeLKR~QLrELAiLNGTyRe~~~   76 (210)
                      -|+++...+  .+++++|+++|++||.   |+||++|++||+||||||+||||||+++.
T Consensus        74 lhV~I~a~~--~e~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~  130 (131)
T 1k1g_A           74 LHALVTANT--MENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN  130 (131)
T ss_dssp             EEEEEEESS--HHHHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred             eEEEEEECC--HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence            355554433  5689999999999995   58999999999999999999999998763

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.12  E-value=0.16  Score=39.41  Aligned_cols=38  Identities=0%  Similarity=-0.032  Sum_probs=30.3

Q ss_pred             EeeehhcchhHHHHHHHHHHHhhhcCCCCCcCchHHHHHH
Q psy12978         21 FQYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQ   60 (210)
Q Consensus        21 ~~~f~D~qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~Q   60 (210)
                      -|+++...  ..+++++|++.|++|+.++.|..+++|++|
T Consensus        74 l~V~I~a~--~~e~i~~A~~~Ie~Ll~~v~~~~~~~~~q~  111 (119)
T 2yqr_A           74 MYIYISHP--KPEGLAAAKKLCENLLQTVHAEYSRFVNQI  111 (119)
T ss_dssp             CEEEEEES--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeC--CHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence            35554443  346799999999999999999999999886

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2bl5a1	134	d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric	4e-09
d1k1ga_	122	d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s	4e-09

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 51  EGEDELKKRQLMELAIINGTYRDNNAK 77
           EGED LKK +LMELAI+NGTYRD N K
Sbjct: 104 EGEDSLKKMKLMELAILNGTYRDANLK 130

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 51  EGEDELKKRQLMELAIINGTYR 72
           E +++L+K QL ELA +NGT R
Sbjct: 101 EDQNDLRKMQLRELARLNGTLR 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2bl5a1	134	Quaking protein A (Xqua) {African clawed frog (Xen	99.59
d1k1ga_	122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	99.3

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.59  E-value=9.9e-17  Score=126.58  Aligned_cols=60  Identities=45%  Similarity=0.557  Sum_probs=53.5

Q ss_pred             Eeeehh---cchhHHHHHHHHHHHhhhcCCCCCcCchHHHHHHHHHHHHHhccccCCCchhhH
Q psy12978         21 FQYFME---LDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLA   80 (210)
Q Consensus        21 ~~~f~D---~qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyRe~~~~~~a   80 (210)
                      .|+++.   .+.+++.+|++|+++|+++|+|++|++|++||+||||||+|||||||++.+.++
T Consensus        71 LHv~I~a~~~~~~a~~kl~~A~~~I~~lL~p~~e~~de~k~~QL~eLa~lNGt~r~~~~~~~~  133 (134)
T d2bl5a1          71 LHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPA  133 (134)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSCTT
T ss_pred             CEEEEEecCcHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhcCccccccCCCCC
Confidence            466654   457789999999999999999999999999999999999999999999887763

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.2e-13  Score=103.40  Aligned_cols=50  Identities=28%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             EeeehhcchhHHHHHHHHHHHhhhcC---CCCCcCchHHHHHHHHHHHHHhcccc
Q psy12978         21 FQYFMELDNVTESSMKILNVEFSSVN---PQQAEGEDELKKRQLMELAIINGTYR   72 (210)
Q Consensus        21 ~~~f~D~qn~ae~kLkkAve~I~~LL---vP~pEg~DeLKR~QLrELAiLNGTyR   72 (210)
                      .|+++..  .+..++++|++.|+++|   .++||++|++||+||||||+||||||
T Consensus        70 LHv~I~a--~~~~~~~~A~~~i~~ll~~~~~~~e~~d~~k~~Ql~eLa~lnGt~r  122 (122)
T d1k1ga_          70 LHALVTA--NTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLR  122 (122)
T ss_dssp             EEEEEEE--SSHHHHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC
T ss_pred             ceEEEec--CChhhHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCcCC
Confidence            4666544  44678999999999999   56899999999999999999999998