Psyllid ID: psy12986

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MSLGLLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQLTKLELRSPSIH
ccccccccccccccccccccEEEccccccccccccccccccccEEEEEccccccccccEEEEcHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHcHHHHHHHHHHcccEEEccccHHHHHHHcccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccc
ccHHHHHHHHcHEcccccccEEEccccccccccccccccccccEEEEEEEEcccccccEEEEcHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEHHEHHHHHccccEEEEcHHHHHHcHHHHHHHHHHHccHEcccccHHHHHHHHHccHHHHHHHHccccHHHHHEEEEccccccccHHHHHHHHHHHHcccccccEcccccccccEEEEEccccccccccccc
mslgllseasnvvdikswptildtddmpkKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACelypsrhialcldpycglGFALWVLSSVysghhsilippsevevnpALWLSAVSQYRVRDTFCSYGVMELCtkglsgsipqLKARNIALGCVRTCVvvaeerprihLTSAFSKLFSalglspravstsfgCRVNIAICLQLTklelrspsih
mslgllseasnvvdikswptildtddmpkKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQltklelrspsih
MSLGLLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQLTKLELRSPSIH
**********NVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQLTKL********
********AS**VDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLS*****LKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQ************
MSLGLLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQLTKLELRSPSIH
*SLGLLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQLTKLELR*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLGLLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQLTKLELRSPSIH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
Q9P265 1576 Disco-interacting protein yes N/A 0.873 0.127 0.713 3e-90
Q6NVJ5 1577 Disco-interacting protein no N/A 0.873 0.127 0.708 5e-90
Q3UH60 1574 Disco-interacting protein no N/A 0.873 0.127 0.699 2e-89
Q9Y2E4 1556 Disco-interacting protein no N/A 0.895 0.132 0.727 4e-89
Q14689 1571 Disco-interacting protein no N/A 0.865 0.126 0.704 1e-88
Q8BWT5 1523 Disco-interacting protein no N/A 0.865 0.130 0.699 2e-88
Q9W0S9 1773 Disco-interacting protein yes N/A 0.913 0.118 0.687 2e-83
Q10250 1517 Uncharacterized protein C yes N/A 0.6 0.090 0.234 1e-07
P95141 619 Long-chain-fatty-acid--AM yes N/A 0.686 0.255 0.244 0.0004
Q7TXK5 619 Long-chain-fatty-acid--AM no N/A 0.686 0.255 0.244 0.0004
>sp|Q9P265|DIP2B_HUMAN Disco-interacting protein 2 homolog B OS=Homo sapiens GN=DIP2B PE=1 SV=3 Back     alignment and function desciption
 Score =  331 bits (849), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 152/213 (71%), Positives = 177/213 (83%)

Query: 8    EASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV 67
            EA+  VD+K+WPTI+DTDD+P+K+L  LY+ PT EMLAYLDFSVSTTGML G+KMSH+AV
Sbjct: 1117 EAAAAVDVKTWPTIIDTDDLPRKRLPQLYKPPTPEMLAYLDFSVSTTGMLTGVKMSHSAV 1176

Query: 68   TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALW 127
             +LCR++KL CELY SR IA+CLDPYCGLGFALW L SVYSGH S+LIPP E+E N  LW
Sbjct: 1177 NALCRAIKLQCELYSSRQIAICLDPYCGLGFALWCLCSVYSGHQSVLIPPMELENNLFLW 1236

Query: 128  LSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTS 187
            LS V+QY++RDTFCSY VMELCTKGL   +  LK R I L CVRTCVVVAEERPR+ L  
Sbjct: 1237 LSTVNQYKIRDTFCSYSVMELCTKGLGNQVEVLKTRGINLSCVRTCVVVAEERPRVALQQ 1296

Query: 188  AFSKLFSALGLSPRAVSTSFGCRVNIAICLQLT 220
            +FSKLF  +GLSPRAVST+FG RVN+AICLQ T
Sbjct: 1297 SFSKLFKDIGLSPRAVSTTFGSRVNVAICLQGT 1329

Homo sapiens (taxid: 9606)
>sp|Q6NVJ5|DI2BA_DANRE Disco-interacting protein 2 homolog B-A OS=Danio rerio GN=dip2ba PE=2 SV=1 Back     alignment and function description
>sp|Q3UH60|DIP2B_MOUSE Disco-interacting protein 2 homolog B OS=Mus musculus GN=Dip2b PE=1 SV=1 Back     alignment and function description
>sp|Q9Y2E4|DIP2C_HUMAN Disco-interacting protein 2 homolog C OS=Homo sapiens GN=DIP2C PE=2 SV=2 Back     alignment and function description
>sp|Q14689|DIP2A_HUMAN Disco-interacting protein 2 homolog A OS=Homo sapiens GN=DIP2A PE=1 SV=2 Back     alignment and function description
>sp|Q8BWT5|DIP2A_MOUSE Disco-interacting protein 2 homolog A OS=Mus musculus GN=Dip2a PE=2 SV=3 Back     alignment and function description
>sp|Q9W0S9|DIP2_DROME Disco-interacting protein 2 OS=Drosophila melanogaster GN=DIP2 PE=1 SV=2 Back     alignment and function description
>sp|Q10250|YD22_SCHPO Uncharacterized protein C56F8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.02 PE=4 SV=1 Back     alignment and function description
>sp|P95141|FAA29_MYCTU Long-chain-fatty-acid--AMP ligase FadD29 OS=Mycobacterium tuberculosis GN=fadD29 PE=1 SV=1 Back     alignment and function description
>sp|Q7TXK5|FAA29_MYCBO Long-chain-fatty-acid--AMP ligase FadD29 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD29 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
270004770 1556 hypothetical protein TcasGA2_TC010545 [T 0.769 0.113 0.900 1e-110
242023845 1529 disco-interacting protein, putative [Ped 0.8 0.120 0.900 1e-108
328777918 2173 PREDICTED: disco-interacting protein 2 [ 0.843 0.089 0.890 1e-107
357622675 1504 hypothetical protein KGM_18662 [Danaus p 0.895 0.136 0.881 1e-107
328699510 2215 PREDICTED: disco-interacting protein 2-l 0.904 0.093 0.872 1e-107
383866043 2194 PREDICTED: disco-interacting protein 2-l 0.843 0.088 0.886 1e-107
350396808 2144 PREDICTED: disco-interacting protein 2-l 0.843 0.090 0.886 1e-107
340715934 2169 PREDICTED: disco-interacting protein 2-l 0.843 0.089 0.886 1e-106
328699512 1693 PREDICTED: disco-interacting protein 2-l 0.904 0.122 0.872 1e-106
345496482 2267 PREDICTED: disco-interacting protein 2-l 0.769 0.078 0.881 1e-106
>gi|270004770|gb|EFA01218.1| hypothetical protein TcasGA2_TC010545 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/211 (90%), Positives = 201/211 (95%)

Query: 8    EASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV 67
            EASNVVDIKSWP ILDTDDMPKKKL  +YRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV
Sbjct: 1070 EASNVVDIKSWPAILDTDDMPKKKLPVVYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV 1129

Query: 68   TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALW 127
            T+LCRSMKLACELYPSRHIALCLDPYCGLGFALW LSS+YSGHHSILIPPSEVEVNPALW
Sbjct: 1130 TNLCRSMKLACELYPSRHIALCLDPYCGLGFALWCLSSIYSGHHSILIPPSEVEVNPALW 1189

Query: 128  LSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTS 187
            LSAVSQY+VRDTFCSYGVMELCTKGL  S+ QLK+R + L CVRTCVVVAEERPRI+LT+
Sbjct: 1190 LSAVSQYKVRDTFCSYGVMELCTKGLGSSVNQLKSRGVNLACVRTCVVVAEERPRINLTT 1249

Query: 188  AFSKLFSALGLSPRAVSTSFGCRVNIAICLQ 218
            +FSKLFSALGLSPRAVSTSFGCRVN+AICLQ
Sbjct: 1250 SFSKLFSALGLSPRAVSTSFGCRVNVAICLQ 1280

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242023845|ref|XP_002432341.1| disco-interacting protein, putative [Pediculus humanus corporis] gi|212517764|gb|EEB19603.1| disco-interacting protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328777918|ref|XP_391894.4| PREDICTED: disco-interacting protein 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|357622675|gb|EHJ74101.1| hypothetical protein KGM_18662 [Danaus plexippus] Back     alignment and taxonomy information
>gi|328699510|ref|XP_003240957.1| PREDICTED: disco-interacting protein 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383866043|ref|XP_003708481.1| PREDICTED: disco-interacting protein 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350396808|ref|XP_003484673.1| PREDICTED: disco-interacting protein 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340715934|ref|XP_003396462.1| PREDICTED: disco-interacting protein 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328699512|ref|XP_001952804.2| PREDICTED: disco-interacting protein 2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345496482|ref|XP_001601926.2| PREDICTED: disco-interacting protein 2-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
UNIPROTKB|J9NWG71277 DIP2C "Uncharacterized protein 0.926 0.166 0.732 1.7e-82
ZFIN|ZDB-GENE-091204-2 1578 dip2a "DIP2 disco-interacting 0.956 0.139 0.704 2.5e-82
UNIPROTKB|F1PTV7 1492 DIP2C "Uncharacterized protein 0.926 0.142 0.732 4.3e-82
RGD|1560155 1528 Dip2c "DIP2 disco-interacting 0.926 0.139 0.732 4.7e-82
UNIPROTKB|F1M140 1529 Dip2c "Protein Dip2c" [Rattus 0.926 0.139 0.732 4.7e-82
UNIPROTKB|H9KZD4 1543 DIP2B "Uncharacterized protein 0.926 0.138 0.718 4.9e-82
UNIPROTKB|F1NXI6 1515 DIP2A "Uncharacterized protein 0.926 0.140 0.732 5.9e-82
UNIPROTKB|F1MKT7 1528 DIP2C "Uncharacterized protein 0.926 0.139 0.727 9.9e-82
ZFIN|ZDB-GENE-031118-39 1547 dip2c "DIP2 disco-interacting 0.926 0.137 0.737 1e-81
UNIPROTKB|F1P1Z6 1502 DIP2C "Uncharacterized protein 0.926 0.141 0.727 1.2e-81
UNIPROTKB|J9NWG7 DIP2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 833 (298.3 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 156/213 (73%), Positives = 176/213 (82%)

Query:     8 EASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV 67
             EA+  VD+++WP ILDTDD+PKK+ A +Y+    + LAYLDFSVSTTGMLAG+KMSHAA 
Sbjct:   991 EAAAAVDVRAWPPILDTDDLPKKRPAQIYKPSNPDTLAYLDFSVSTTGMLAGVKMSHAAT 1050

Query:    68 TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALW 127
             ++ CRS+KL CELYPSR +A+CLDPYCGLGF LW L SVYSGH SILIPPSE+E NPALW
Sbjct:  1051 SAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALW 1110

Query:   128 LSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTS 187
             L AVSQY+VRDTFCSY VMELCTKGL      LKAR + L  VRTCVVVAEERPRI LT 
Sbjct:  1111 LLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQ 1170

Query:   188 AFSKLFSALGLSPRAVSTSFGCRVNIAICLQLT 220
             +FSKLF  LGL PRAVSTSFGCRVN+AICLQ T
Sbjct:  1171 SFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGT 1203
GO:0003824 "catalytic activity" evidence=IEA
ZFIN|ZDB-GENE-091204-2 dip2a "DIP2 disco-interacting protein 2 homolog A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTV7 DIP2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1560155 Dip2c "DIP2 disco-interacting protein 2 homolog C (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M140 Dip2c "Protein Dip2c" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H9KZD4 DIP2B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXI6 DIP2A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MKT7 DIP2C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-39 dip2c "DIP2 disco-interacting protein 2 homolog C (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1Z6 DIP2C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9P265DIP2B_HUMANNo assigned EC number0.71360.87390.1275yesN/A
Q9W0S9DIP2_DROMENo assigned EC number0.68720.91300.1184yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
cd05905 556 cd05905, Dip2, Disco-interacting protein 2 (Dip2) 3e-71
cd05931 547 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) 8e-14
pfam00501 412 pfam00501, AMP-binding, AMP-binding enzyme 1e-10
cd05906 560 cd05906, A_NRPS_TubE_like, The adenylation domain 7e-06
cd05908 499 cd05908, A_NRPS_MycA_like, The adenylation domain 4e-05
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 0.002
cd04433 338 cd04433, AFD_class_I, Adenylate forming domain, Cl 0.003
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) Back     alignment and domain information 
 Score =  226 bits (578), Expect = 3e-71
 Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 12/218 (5%)

Query: 7   SEASNVVDIKSWPTILDTDDMPKK-----KLAALYRAPTAEMLAYLDFSVSTTGMLAGIK 61
                ++  K WP ++      K      K    +  P     AY+++  S  G + G+ 
Sbjct: 106 KTTGEILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVT 165

Query: 62  MSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 121
           ++H A+ + C+++K AC+    R I   LD   G+GF    L+SV +G H+ILIPP+ ++
Sbjct: 166 VTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMK 225

Query: 122 VNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP 181
            NP LW   +S+Y+++DT      +                ++I L C+R  +V    RP
Sbjct: 226 NNPLLWFQIISKYKIKDTLVKSRDLHWALNA------HRDQKDINLSCLRMLIVADGARP 279

Query: 182 -RIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQ 218
             +    AF  +F + GLSP A ST      N  I  +
Sbjct: 280 WSLASCQAFLNVFQSKGLSPCASSTEASTVANRRIGTR 317

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) Back     alignment and domain information
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme Back     alignment and domain information
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents Back     alignment and domain information
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
KOG1176|consensus 537 99.97
COG0365 528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 99.96
COG0318 534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 99.96
KOG1177|consensus 596 99.95
COG1022 613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 99.95
PRK05851 525 long-chain-fatty-acid--[acyl-carrier-protein] liga 99.95
PLN02654 666 acetate-CoA ligase 99.95
PRK07769 631 long-chain-fatty-acid--CoA ligase; Validated 99.95
PRK06334 539 long chain fatty acid--[acyl-carrier-protein] liga 99.95
PRK08180 614 feruloyl-CoA synthase; Reviewed 99.94
PTZ00342 746 acyl-CoA synthetase; Provisional 99.94
TIGR02316 628 propion_prpE propionate--CoA ligase. This family c 99.94
PLN03051 499 acyl-activating enzyme; Provisional 99.94
PRK05691 4334 peptide synthase; Validated 99.94
TIGR02188 625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 99.94
PRK12476 612 putative fatty-acid--CoA ligase; Provisional 99.94
PRK07529 632 AMP-binding domain protein; Validated 99.93
PLN02736 651 long-chain acyl-CoA synthetase 99.93
PLN02860 563 o-succinylbenzoate-CoA ligase 99.93
PRK08043 718 bifunctional acyl-[acyl carrier protein] synthetas 99.93
PRK00174 637 acetyl-CoA synthetase; Provisional 99.93
PRK12582 624 acyl-CoA synthetase; Provisional 99.93
PLN02614 666 long-chain acyl-CoA synthetase 99.93
PRK09192 579 acyl-CoA synthetase; Validated 99.93
PRK07788 549 acyl-CoA synthetase; Validated 99.93
PRK05850 578 acyl-CoA synthetase; Validated 99.92
PRK04319 570 acetyl-CoA synthetase; Provisional 99.92
PRK13295 547 cyclohexanecarboxylate-CoA ligase; Reviewed 99.92
PTZ00237 647 acetyl-CoA synthetase; Provisional 99.92
PRK10524 629 prpE propionyl-CoA synthetase; Provisional 99.92
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 99.92
PRK08314 546 long-chain-fatty-acid--CoA ligase; Validated 99.92
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 99.92
PLN02861 660 long-chain-fatty-acid-CoA ligase 99.92
PRK07768 545 long-chain-fatty-acid--CoA ligase; Validated 99.92
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 99.92
PLN03052 728 acetate--CoA ligase; Provisional 99.92
PRK07787 471 acyl-CoA synthetase; Validated 99.92
PRK12467 3956 peptide synthase; Provisional 99.91
PRK13382 537 acyl-CoA synthetase; Provisional 99.91
TIGR03208 538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 99.91
PLN02574 560 4-coumarate--CoA ligase-like 99.91
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.91
TIGR02275 527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 99.91
KOG1256|consensus 691 99.91
PRK07656 513 long-chain-fatty-acid--CoA ligase; Validated 99.91
PRK06060 705 acyl-CoA synthetase; Validated 99.91
PLN02246 537 4-coumarate--CoA ligase 99.91
PRK03584 655 acetoacetyl-CoA synthetase; Provisional 99.91
PLN02387 696 long-chain-fatty-acid-CoA ligase family protein 99.91
PRK05852 534 acyl-CoA synthetase; Validated 99.91
PRK06839 496 acyl-CoA synthetase; Validated 99.91
PRK12467 3956 peptide synthase; Provisional 99.91
PRK08308 414 acyl-CoA synthetase; Validated 99.91
PRK10946 536 entE enterobactin synthase subunit E; Provisional 99.91
TIGR01217 652 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym 99.91
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.91
PRK12583 558 acyl-CoA synthetase; Provisional 99.91
PRK06145 497 acyl-CoA synthetase; Validated 99.9
PRK08316 523 acyl-CoA synthetase; Validated 99.9
TIGR03098 515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 99.9
TIGR02372 386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 99.9
KOG1180|consensus 678 99.9
PRK12316 5163 peptide synthase; Provisional 99.9
PRK12316 5163 peptide synthase; Provisional 99.9
PRK09274 552 peptide synthase; Provisional 99.9
PRK08279 600 long-chain-acyl-CoA synthetase; Validated 99.9
PRK08315 559 AMP-binding domain protein; Validated 99.9
TIGR01733 408 AA-adenyl-dom amino acid adenylation domain. This 99.9
PTZ00216 700 acyl-CoA synthetase; Provisional 99.9
PRK05605 573 long-chain-fatty-acid--CoA ligase; Validated 99.9
PLN02430 660 long-chain-fatty-acid-CoA ligase 99.9
PRK04813 503 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.9
TIGR01734 502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 99.89
PRK07008 539 long-chain-fatty-acid--CoA ligase; Validated 99.89
PRK07638 487 acyl-CoA synthetase; Validated 99.89
PRK03640 483 O-succinylbenzoic acid--CoA ligase; Provisional 99.89
PRK06087 547 short chain acyl-CoA synthetase; Reviewed 99.89
PRK05691 4334 peptide synthase; Validated 99.89
PRK05677 562 long-chain-fatty-acid--CoA ligase; Validated 99.89
PRK07445 452 O-succinylbenzoic acid--CoA ligase; Reviewed 99.89
TIGR02262 508 benz_CoA_lig benzoate-CoA ligase family. Character 99.89
PRK06187 521 long-chain-fatty-acid--CoA ligase; Validated 99.89
PRK05857 540 acyl-CoA synthetase; Validated 99.89
PRK07514 504 malonyl-CoA synthase; Validated 99.89
PRK05620 576 long-chain-fatty-acid--CoA ligase; Validated 99.89
PRK13388 540 acyl-CoA synthetase; Provisional 99.89
PRK06188 524 acyl-CoA synthetase; Validated 99.89
PRK07470 528 acyl-CoA synthetase; Validated 99.89
PRK06155 542 crotonobetaine/carnitine-CoA ligase; Provisional 99.88
PLN03102 579 acyl-activating enzyme; Provisional 99.88
PRK12492 562 long-chain-fatty-acid--CoA ligase; Provisional 99.88
PRK07786 542 long-chain-fatty-acid--CoA ligase; Validated 99.88
PRK07867 529 acyl-CoA synthetase; Validated 99.88
PRK13383 516 acyl-CoA synthetase; Provisional 99.88
PRK07824 358 O-succinylbenzoic acid--CoA ligase; Provisional 99.88
PRK06164 540 acyl-CoA synthetase; Validated 99.88
PRK09088 488 acyl-CoA synthetase; Validated 99.88
PLN02330 546 4-coumarate--CoA ligase-like 1 99.88
PRK12406 509 long-chain-fatty-acid--CoA ligase; Provisional 99.87
TIGR01923 436 menE O-succinylbenzoate-CoA ligase. This model rep 99.87
PRK06018 542 putative acyl-CoA synthetase; Provisional 99.87
TIGR03205 541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 99.87
KOG1179|consensus 649 99.87
PRK06710 563 long-chain-fatty-acid--CoA ligase; Validated 99.87
KOG1175|consensus 626 99.86
PRK08008 517 caiC putative crotonobetaine/carnitine-CoA ligase; 99.86
PRK08276 502 long-chain-fatty-acid--CoA ligase; Validated 99.86
PLN02479 567 acetate-CoA ligase 99.86
PRK07059 557 Long-chain-fatty-acid--CoA ligase; Validated 99.86
PRK08751 560 putative long-chain fatty acyl CoA ligase; Provisi 99.86
PRK09029 458 O-succinylbenzoic acid--CoA ligase; Provisional 99.86
PRK13390 501 acyl-CoA synthetase; Provisional 99.86
PRK13391 511 acyl-CoA synthetase; Provisional 99.85
PRK06178 567 acyl-CoA synthetase; Validated 99.85
PRK08974 560 long-chain-fatty-acid--CoA ligase; Validated 99.85
PRK08162 545 acyl-CoA synthetase; Validated 99.84
PRK07798 533 acyl-CoA synthetase; Validated 99.84
PRK07868 994 acyl-CoA synthetase; Validated 99.82
TIGR02155 422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 99.81
TIGR03335 445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.78
COG1021 542 EntE Peptide arylation enzymes [Secondary metaboli 99.78
PTZ00297 1452 pantothenate kinase; Provisional 99.73
COG1020642 EntF Non-ribosomal peptide synthetase modules and 99.72
KOG3628|consensus 1363 99.59
TIGR03089227 conserved hypothetical protein TIGR03089. This pro 99.36
COG1541 438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.23
TIGR02304 430 aden_form_hyp probable adenylate-forming enzyme. M 98.94
KOG1178|consensus 1032 98.79
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 97.82
KOG3628|consensus 1363 97.21
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 84.44
KOG1177|consensus 596 82.61
PF00501 417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 82.5
PRK02261137 methylaspartate mutase subunit S; Provisional 81.66
>KOG1176|consensus Back     alignment and domain information 
Probab=99.97  E-value=2.8e-29  Score=218.93  Aligned_cols=168  Identities=18%  Similarity=0.216  Sum_probs=141.6

Q ss_pred             cCCCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986         36 YRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI  115 (230)
Q Consensus        36 ~~~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~  115 (230)
                      ..+..++|++.|+|||||||.||||++||++++.+..+....+.+...|+.++.+|+||..|+...+...+..|.++++.
T Consensus       178 ~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~  257 (537)
T KOG1176|consen  178 IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICL  257 (537)
T ss_pred             cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEEC
Confidence            34456799999999999999999999999999998888777788888999999999999999998555566666666666


Q ss_pred             CCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhh
Q psy12986        116 PPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA  195 (230)
Q Consensus       116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~  195 (230)
                      +.+    ++..+++.|++|+||+++++|.++.++++..       ....++++++|.+.+||+ |+++++.+++.++|+ 
T Consensus       258 ~~f----~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p-------~~~~~~l~sl~~v~~gga-~~~~~~~~~~~~~l~-  324 (537)
T KOG1176|consen  258 RKF----DAELFLDLIEKYKVTHLFLVPPVLNMLAKSP-------IVKKYDLSSLRSVLSGGA-PLSPATLEKVKERLP-  324 (537)
T ss_pred             CCC----CHHHHHHHHHHhCEEEEEcChHHHHHHhcCC-------ccCcccCCccEEEEecCC-CCCHHHHHHHHHhCC-
Confidence            544    5899999999999999999999999876542       345689999999999998 899999999999985 


Q ss_pred             CCCCccccccccCCCcceeEEeecc
Q psy12986        196 LGLSPRAVSTSFGCRVNIAICLQLT  220 (230)
Q Consensus       196 ~gl~~~~~~~~YG~te~~~~~~~~~  220 (230)
                          ...+.++|||||++.....+.
T Consensus       325 ----~~~v~q~YGmTE~~~~~~~~~  345 (537)
T KOG1176|consen  325 ----NVTVIQGYGMTEAGGLITSND  345 (537)
T ss_pred             ----CceEEEeeccccccCceeecC
Confidence                245899999999985544433

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1177|consensus Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PRK12476 putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK09192 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05850 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PLN03052 acetate--CoA ligase; Provisional Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>KOG1256|consensus Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>KOG1180|consensus Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>KOG1179|consensus Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>KOG1175|consensus Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02479 acetate-CoA ligase Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08162 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG3628|consensus Back     alignment and domain information
>TIGR03089 conserved hypothetical protein TIGR03089 Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>KOG1178|consensus Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>KOG3628|consensus Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>KOG1177|consensus Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
3kxw_A 590 Saframycin MX1 synthetase B; fatty acid AMP ligase 1e-49
3gqw_A 576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 2e-16
3t5a_A 480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 1e-14
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 Back     alignment and structure
 Score =  169 bits (431), Expect = 1e-49
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 5/206 (2%)

Query: 7   SEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAA 66
            E +        P I        +  +    +  +  +A+L ++  +T    G+ +SH  
Sbjct: 132 DELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHN 191

Query: 67  VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPAL 126
           +      +  +  +     I   L P+  +G    +L+ +Y G  +I++ P     NP  
Sbjct: 192 LLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLS 251

Query: 127 WLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLT 186
           WL  +++Y+   +       + C K     I + K   + L    T    A E  R    
Sbjct: 252 WLKHITKYKATISGSPNFAYDYCVKR----IREEKKEGLDLSSWVTAFNGA-EPVREETM 306

Query: 187 SAFSKLFSALGLSPRAVSTSFGCRVN 212
             F + F   G    A    +G    
Sbjct: 307 EHFYQAFKEFGFRKEAFYPCYGLAEA 332
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
3t5a_A 480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 99.97
3kxw_A 590 Saframycin MX1 synthetase B; fatty acid AMP ligase 99.97
4gs5_A 358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 99.97
3gqw_A 576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 99.96
1pg4_A 652 Acetyl-COA synthetase; AMP-forming, adenylate-form 99.96
1ry2_A 663 Acetyl-coenzyme A synthetase 1, acyl-activating en 99.96
1mdb_A 539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 99.96
2d1s_A 548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 99.95
1t5h_X 504 4-chlorobenzoyl COA ligase; adenylate-forming coen 99.95
3ni2_A 536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 99.95
3rix_A 550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 99.95
3fce_A 512 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.95
3e7w_A 511 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.95
3o83_A 544 Peptide arylation enzyme; ligase, adenylation of 2 99.95
3r44_A 517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 99.95
3g7s_A 549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 99.95
4fuq_A 503 Malonyl COA synthetase; ANL superfamily, methylma 99.95
1v25_A 541 Long-chain-fatty-acid-COA synthetase; ligase, stru 99.95
3etc_A 580 AMP-binding protein; adenylate-forming acyl-COA sy 99.95
3c5e_A 570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 99.95
3ipl_A 501 2-succinylbenzoate--COA ligase; structural genomic 99.95
3nyq_A 505 Malonyl-COA ligase; A/B topology ababa sandwich be 99.95
3rg2_A 617 Enterobactin synthase component E (ENTE), 2,3-DIH 99.95
4dg8_A 620 PA1221; ANL superfamily, adenylation domain, pepti 99.95
4gr5_A 570 Non-ribosomal peptide synthetase; MBTH-like domain 99.94
2v7b_A 529 Benzoate-coenzyme A ligase; benzoate oxidation, be 99.94
3qov_A 436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 99.94
3l8c_A 521 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.94
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 99.94
1amu_A 563 GRSA, gramicidin synthetase 1; peptide synthetase, 99.94
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 99.93
3ivr_A 509 Putative long-chain-fatty-acid COA ligase; structu 99.93
2y27_A 437 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.93
2y4o_A 443 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.92
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 99.92
3ite_A 562 SIDN siderophore synthetase; ligase, non-ribosomal 99.92
3rix_A 550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 80.59
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
Probab=99.97  E-value=5.9e-31  Score=228.59  Aligned_cols=178  Identities=16%  Similarity=0.187  Sum_probs=146.0

Q ss_pred             CCCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCC------CCeEEEecCCcCchhHHHHHHHHhhhCc
Q psy12986         37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP------SRHIALCLDPYCGLGFALWVLSSVYSGH  110 (230)
Q Consensus        37 ~~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~~~~l~~~pl~~~~g~~~~~~~~l~~G~  110 (230)
                      ....++++++|+|||||||.||||+++|+++..++......+++..      +|++++++|++|++|++..++.+++.|+
T Consensus       178 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  257 (480)
T 3t5a_A          178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY  257 (480)
T ss_dssp             CCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred             CCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence            3456789999999999999999999999999999888888888877      8999999999999998877899999999


Q ss_pred             eeEEeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHH
Q psy12986        111 HSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFS  190 (230)
Q Consensus       111 ~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~  190 (230)
                      ++++.++..+..+|..|++.|+++++| +..+|.++..++....   ........++++||.+++||+ ++++++.++|.
T Consensus       258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~---~~~~~~~~~l~~lr~i~~gG~-~l~~~~~~~~~  332 (480)
T 3t5a_A          258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRT---TDDDMAGRDLGNILTILSGSE-RVQAATIKRFA  332 (480)
T ss_dssp             CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHC---CTGGGTTCCCTTCCEEEECCT-TCCHHHHHHHH
T ss_pred             ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhc---CcccccccchhhhheeeecCC-cCCHHHHHHHH
Confidence            999988766556899999999999999 6677777766554321   112345678999999999998 79999999999


Q ss_pred             HHhhhCCCCccccccccCCCcceeEEeec
Q psy12986        191 KLFSALGLSPRAVSTSFGCRVNIAICLQL  219 (230)
Q Consensus       191 ~~~~~~gl~~~~~~~~YG~te~~~~~~~~  219 (230)
                      ++|+..|++...+.+.||+||++.++...
T Consensus       333 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  361 (480)
T 3t5a_A          333 DRFARFNLQERVIRPSYWLAEATVYVATS  361 (480)
T ss_dssp             HHSGGGTCCGGGEEEEEEETTTTEEEEEC
T ss_pred             HHHhhcCCChhhccccccccccceeEeec
Confidence            99988888888899999999998876654
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 230
d1pg4a_ 643 e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en 7e-10
d1ry2a_ 640 e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast 1e-08
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 10/205 (4%)

Query: 5   LLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSH 64
           +L    + +D +    +   D + K        A  AE   ++ ++  +TG   G+  + 
Sbjct: 215 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 274

Query: 65  AA-VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVN 123
              +     + K   + +P        D     G +  +   +  G  +++         
Sbjct: 275 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 334

Query: 124 PALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRI 183
           PA     V +++V   + +   +                       +R    V E     
Sbjct: 335 PARMCQVVDKHQVNILYTAPTAIRALMA-----EGDKAIEGTDRSSLRILGSVGEPINP- 388

Query: 184 HLTSAFSKLFSALGLSPRAVSTSFG 208
               A+   +  +G     V  ++ 
Sbjct: 389 ---EAWEWYWKKIGKEKCPVVDTWW 410
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d1pg4a_ 643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 99.97
d1ry2a_ 640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 99.95
d1v25a_ 534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 99.88
d1lcia_ 541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 99.88
d1mdba_ 536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 99.84
d1amua_ 514 Phenylalanine activating domain of gramicidin synt 99.84
d3cw9a1 503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 99.8
d1lcia_ 541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 87.8
d3cw9a1 503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 85.28
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.97  E-value=1.7e-30  Score=231.41  Aligned_cols=172  Identities=12%  Similarity=0.045  Sum_probs=145.4

Q ss_pred             CCCCCceEEEEEccCCCCCceeeeccHHHHHHHH-HHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986         38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP  116 (230)
Q Consensus        38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~  116 (230)
                      ...++|+++|+|||||||.||||+++|++++... ......+++.++|++++.+|++|+.|+...++.+++.|+++++++
T Consensus       248 ~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~  327 (643)
T d1pg4a_         248 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE  327 (643)
T ss_dssp             CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred             CCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEec
Confidence            3467899999999999999999999999976554 445556789999999999999999998776788999999999987


Q ss_pred             CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986        117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL  196 (230)
Q Consensus       117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~  196 (230)
                      ......+|..+++.|+++++|+++.+|++++.+++....     ..+..++++||.+++||+ |+++++++++.+.|+..
T Consensus       328 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~-----~~~~~dl~sLr~i~~~G~-pl~~~~~~~~~~~~g~~  401 (643)
T d1pg4a_         328 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-----AIEGTDRSSLRILGSVGE-PINPEAWEWYWKKIGKE  401 (643)
T ss_dssp             SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----GTTTCCCTTCCEEEEESS-CCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch-----hccccCCCceEEEEEEeC-CCCHHHHHHHHHHhCCC
Confidence            655456789999999999999999999999988765322     345678999999999998 89999999999998543


Q ss_pred             CCCccccccccCCCcceeEEee
Q psy12986        197 GLSPRAVSTSFGCRVNIAICLQ  218 (230)
Q Consensus       197 gl~~~~~~~~YG~te~~~~~~~  218 (230)
                      +   ..+.+.||+||++..++.
T Consensus       402 ~---~~i~~~yG~TE~g~~~~~  420 (643)
T d1pg4a_         402 K---CPVVDTWWQTETGGFMIT  420 (643)
T ss_dssp             C---SCEEEEBCCGGGSSCSBC
T ss_pred             C---ceEEEeechhhccceEEe
Confidence            3   458999999999876554
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure