Psyllid ID: psy13000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKREFDHNK
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
msffknifgkteekgpttGEAIQKLRETEDMLIKKQEFLEKKIGEEINiartngtknkrefdhnk
Flexible Loop (DISEMBL)
msffknifgkteekgpttgeAIQKLRETEDMLIKKQEFlekkigeeiniartngtknkrefdhnk
Low Complexity Region (SEG)
MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKREFDHNK
Disordered region (IsUnstruct)
*****************************************************************
Disordered Region (DISOPRED)
*************************RE**********FLEKKIGEEINIA***************
Disordered Region (DISEMBL)
MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKN********
Disordered Region (DISPRO)
**************GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTN************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFFKNIFGKTEEKGPTTGEAxxxxxxxxxxxxxxxxxxxxxIGEEINIARTNGTKNKREFDHNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
A2VDY3	222	Charged multivesicular bo	yes	N/A	0.907	0.265	0.616	5e-12
Q9BY43	222	Charged multivesicular bo	no	N/A	0.907	0.265	0.633	7e-12
Q5XGW6	222	Charged multivesicular bo	N/A	N/A	0.907	0.265	0.590	6e-11
Q6GL11	222	Charged multivesicular bo	yes	N/A	0.907	0.265	0.590	7e-11
Q6IQ73	224	Charged multivesicular bo	yes	N/A	0.676	0.196	0.75	9e-11
Q9D8B3	224	Charged multivesicular bo	yes	N/A	0.907	0.263	0.571	1e-09
Q9H444	224	Charged multivesicular bo	no	N/A	0.907	0.263	0.571	1e-09
Q5ZHP5	227	Charged multivesicular bo	yes	N/A	0.676	0.193	0.681	2e-09
Q6GNN8	227	Charged multivesicular bo	N/A	N/A	0.707	0.202	0.652	6e-09
Q7ZVC4	220	Charged multivesicular bo	no	N/A	0.615	0.181	0.75	7e-09

>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 1  MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MS    +FG+  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+ +GTKNKR
Sbjct: 1  MSGLGRLFGRGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIEQELQAAKKHGTKNKR 60

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4A filaments can promote or stabilize negative curvature and outward budding.
Bos taurus (taxid: 9913)

>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 1  MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MS    +FGK  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+  GTKNKR
Sbjct: 1  MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 60

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4A filaments can promote or stabilize negative curvature and outward budding. Via its interaction with PDCD6IP involved in HIV-1 p6-and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 1  MSFFKNIFGKTEE--KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
          MS    +FG   +  KGP+  EAIQKLR+TE+ML KKQEFLEKKI +E+  A+ +GTKNK
Sbjct: 1  MSLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHGTKNK 60

Query: 59 R 59
          R
Sbjct: 61 R 61

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 1  MSFFKNIFGKTEE--KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
          MS    +FG   +  KGP+  EAIQKLR+TE+ML KKQEFLEKKI +E+  A+ +GTKNK
Sbjct: 1  MSLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHGTKNK 60

Query: 59 R 59
          R
Sbjct: 61 R 61

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 37/44 (84%)

Query: 16 PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          PT  EAIQKLRETE+ML KKQ+FLEKKI  E+ IA+ NGTKNKR
Sbjct: 18 PTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKKNGTKNKR 61

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 1  MSFFKNIFGKTEEKG----PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTK 56
          MS F  +FG    K     PT  EAIQ+LR+TE+ML KKQEFLEKKI +E+  A+ +GTK
Sbjct: 1  MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTK 60

Query: 57 NKR 59
          NKR
Sbjct: 61 NKR 63

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4B filaments can promote or stabilize negative curvature and outward budding.

Mus musculus (taxid: 10090)

>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 1  MSFFKNIFGKTEEKG----PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTK 56
          MS F  +FG    K     PT  EAIQ+LR+TE+ML KKQEFLEKKI +E+  A+ +GTK
Sbjct: 1  MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTK 60

Query: 57 NKR 59
          NKR
Sbjct: 61 NKR 63

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4B filaments can promote or stabilize negative curvature and outward budding. Via its interaction with PDCD6IP involved in HIV-1 p6-and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 16 PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          P+  EAIQ+LR+TE+ML KKQEFLEKKI +E+  AR +GTKNKR
Sbjct: 22 PSPQEAIQRLRDTEEMLSKKQEFLEKKIEQELAAARKHGTKNKR 65

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c PE=2 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 14 KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          KGP+  EA+ KLRETE+ML KKQE+LEKKI  E+  A+ +GTKNKR
Sbjct: 22 KGPSAQEALFKLRETEEMLTKKQEYLEKKIELELATAKKHGTKNKR 67

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 35/40 (87%)

Query: 20 EAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          EAIQ+LRETE+ML KKQEFLEKKI +E+  A+ NGTKNKR
Sbjct: 22 EAIQRLRETEEMLTKKQEFLEKKIEQELVTAKKNGTKNKR 61

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
91085925	214	PREDICTED: similar to GA20793-PA [Tribol	0.907	0.275	0.745	2e-16
289739563	234	hypothatical protein [Glossina morsitans	0.907	0.252	0.728	4e-16
242004538	211	Charged multivesicular body protein 4C,	0.907	0.279	0.75	5e-16
194863252	226	GG10579 [Drosophila erecta] gi|190662218	0.907	0.261	0.728	9e-16
195401617	228	GJ18577 [Drosophila virilis] gi|19414241	0.907	0.258	0.728	9e-16
194754635	226	GF12950 [Drosophila ananassae] gi|190620	0.907	0.261	0.728	1e-15
195474956	226	GE22521 [Drosophila yakuba] gi|194175853	0.907	0.261	0.728	1e-15
28573949	226	shrub [Drosophila melanogaster] gi|17861	0.907	0.261	0.728	1e-15
195332727	226	GM20627 [Drosophila sechellia] gi|195581	0.907	0.261	0.728	1e-15
121543879	223	putative chromatin modifying protein 4B	0.907	0.264	0.7	2e-15

>gi|91085925|ref|XP_969990.1| PREDICTED: similar to GA20793-PA [Tribolium castaneum] gi|270009953|gb|EFA06401.1| hypothetical protein TcasGA2_TC009279 [Tribolium castaneum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 49/59 (83%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FGK EEK PTTGEAIQKLRETEDMLIKKQE+LE KI +EI  A+ N +KNKR
Sbjct: 1  MSFFGKMFGKKEEKAPTTGEAIQKLRETEDMLIKKQEYLESKIDQEILTAKKNASKNKR 59

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739563|gb|ADD18529.1| hypothatical protein [Glossina morsitans morsitans]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 50/59 (84%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E+ P+TGEAIQKLRETE+MLIKKQEFLE KI EE+NIAR N +KNKR
Sbjct: 1  MSFFGKMFGGKKEQAPSTGEAIQKLRETENMLIKKQEFLESKIEEELNIARKNASKNKR 59

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004538|ref|XP_002423140.1| Charged multivesicular body protein 4C, putative [Pediculus humanus corporis] gi|212506086|gb|EEB10402.1| Charged multivesicular body protein 4C, putative [Pediculus humanus corporis]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 1  MSFFKNIFG-KTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG K  +K PTTGEAIQKLRETEDMLIKKQEFLE KI +E+ IAR NG KNKR
Sbjct: 1  MSFFGRMFGGKKGDKAPTTGEAIQKLRETEDMLIKKQEFLESKIEQELQIARANGVKNKR 60

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863252|ref|XP_001970351.1| GG10579 [Drosophila erecta] gi|190662218|gb|EDV59410.1| GG10579 [Drosophila erecta]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI +E+NIAR N +KNKR
Sbjct: 1  MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401617|ref|XP_002059409.1| GJ18577 [Drosophila virilis] gi|194142415|gb|EDW58821.1| GJ18577 [Drosophila virilis]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 48/59 (81%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI EE+N AR N +KNKR
Sbjct: 1  MSFFGKMFGAKKEVAPTTGEAIQKLRETENMLIKKQEFLESKIEEELNTARKNASKNKR 59

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754635|ref|XP_001959600.1| GF12950 [Drosophila ananassae] gi|190620898|gb|EDV36422.1| GF12950 [Drosophila ananassae]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI +E+NIAR N +KNKR
Sbjct: 1  MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474956|ref|XP_002089752.1| GE22521 [Drosophila yakuba] gi|194175853|gb|EDW89464.1| GE22521 [Drosophila yakuba]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI +E+NIAR N +KNKR
Sbjct: 1  MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573949|ref|NP_610462.3| shrub [Drosophila melanogaster] gi|17861598|gb|AAL39276.1| GH13992p [Drosophila melanogaster] gi|28381065|gb|AAF58977.2| shrub [Drosophila melanogaster] gi|220945254|gb|ACL85170.1| shrb-PA [synthetic construct] gi|220954992|gb|ACL90039.1| shrb-PA [synthetic construct]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI +E+NIAR N +KNKR
Sbjct: 1  MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332727|ref|XP_002033045.1| GM20627 [Drosophila sechellia] gi|195581800|ref|XP_002080718.1| GD10100 [Drosophila simulans] gi|194125015|gb|EDW47058.1| GM20627 [Drosophila sechellia] gi|194192727|gb|EDX06303.1| GD10100 [Drosophila simulans]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 1  MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI +E+NIAR N +KNKR
Sbjct: 1  MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543879|gb|ABM55604.1| putative chromatin modifying protein 4B [Maconellicoccus hirsutus]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 1  MSFFKNIFG-KTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          MSF   +FG K EEKGPTT EAIQ LR+TE+ML+KKQ FLEKKI EE+ +A+ NGTKNKR
Sbjct: 1  MSFLSKVFGGKKEEKGPTTAEAIQNLRQTEEMLMKKQSFLEKKIDEELAVAKANGTKNKR 60

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
FB|FBgn0086656	226	shrb "shrub" [Drosophila melan	0.907	0.261	0.728	2e-17
ZFIN|ZDB-GENE-040426-2812	224	chmp4b "chromatin modifying pr	0.907	0.263	0.655	3.8e-14
UNIPROTKB|F1S4Z2	224	CHMP4B "Uncharacterized protei	0.907	0.263	0.619	7.9e-14
UNIPROTKB|A2VDY3	222	CHMP4A "Charged multivesicular	0.907	0.265	0.616	1.3e-13
UNIPROTKB|E9PQI5	166	CHMP4A "Charged multivesicular	0.907	0.355	0.633	1.3e-13
UNIPROTKB|H0YI46	205	CHMP4A "Charged multivesicular	0.907	0.287	0.633	1.3e-13
UNIPROTKB|Q14D22	265	CHMP4A "Charged multivesicular	0.907	0.222	0.633	1.3e-13
UNIPROTKB|Q9BY43	222	CHMP4A "Charged multivesicular	0.907	0.265	0.633	1.3e-13
UNIPROTKB|E2RCT8	264	TM9SF1 "Uncharacterized protei	0.907	0.223	0.6	3.4e-13
UNIPROTKB|H0YI89	61	CHMP4A "Charged multivesicular	0.815	0.868	0.666	3.4e-13

FB|FBgn0086656 shrb "shrub" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query:     1 MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MSFF  +FG  +E  PTTGEAIQKLRETE+MLIKKQEFLE KI +E+NIAR N +KNKR
Sbjct:     1 MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0044130 "negative regulation of growth of symbiont in host" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-2812 chmp4b "chromatin modifying protein 4B" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query:     1 MSFFKNIFGKTEE--KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
             MS F  +FG   +  KGPT  EAIQKLRETE+ML KKQ+FLEKKI  E+ IA+ NGTKNK
Sbjct:     1 MSVFGKLFGGGGKGGKGPTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKKNGTKNK 60

Query:    59 R 59
             R
Sbjct:    61 R 61

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|F1S4Z2 CHMP4B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query:     1 MSFFKNIFG----KTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTK 56
             MS F  +FG    K  E GPT  EAIQ+LR+TEDML KKQEFLEKKI +E+  A+ +GTK
Sbjct:     1 MSVFGKLFGAGGGKAGEGGPTPQEAIQRLRDTEDMLSKKQEFLEKKIEQELTAAKKHGTK 60

Query:    57 NKR 59
             NKR
Sbjct:    61 NKR 63

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|A2VDY3 CHMP4A "Charged multivesicular body protein 4a" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query:     1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MS    +FG+  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+ +GTKNKR
Sbjct:     1 MSGLGRLFGRGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIEQELQAAKKHGTKNKR 60

GO:0031902 "late endosome membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

UNIPROTKB|E9PQI5 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query:     1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MS    +FGK  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+  GTKNKR
Sbjct:    44 MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 103

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|H0YI46 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query:     1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MS    +FGK  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+  GTKNKR
Sbjct:    21 MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 80

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q14D22 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query:     1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MS    +FGK  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+  GTKNKR
Sbjct:    44 MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 103

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9BY43 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query:     1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MS    +FGK  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+  GTKNKR
Sbjct:     1 MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 60

GO:0008289 "lipid binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

UNIPROTKB|E2RCT8 TM9SF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 36/60 (60%), Positives = 47/60 (78%)

Query:     1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             MS    +FG+  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+ +A+ +G KNKR
Sbjct:    44 MSGLGRLFGRGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQMAKKHGIKNKR 103

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|H0YI89 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 36/54 (66%), Positives = 44/54 (81%)

Query:     7 IFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
             +FGK  +EKGPT  EAIQKL+ETE +LIKKQEFLE+KI +E+  A+  GTKNKR
Sbjct:     5 LFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 58

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6IQ73	CHM4C_DANRE	No assigned EC number	0.75	0.6769	0.1964	yes	N/A
Q6GL11	CHM4B_XENTR	No assigned EC number	0.5901	0.9076	0.2657	yes	N/A
Q5ZHP5	CHM4B_CHICK	No assigned EC number	0.6818	0.6769	0.1938	yes	N/A
Q9D8B3	CHM4B_MOUSE	No assigned EC number	0.5714	0.9076	0.2633	yes	N/A
A2VDY3	CHM4A_BOVIN	No assigned EC number	0.6166	0.9076	0.2657	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	65
pfam03357	169	pfam03357, Snf7, Snf7	6e-05

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 37.6 bits (88), Expect = 6e-05
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 20 EAIQKLRETEDMLIKKQEFLEKKIGEEIN-IARTNGTKNKR 59
          EAI  LR+    L KKQE LEKKI +    I +     NK 
Sbjct: 1  EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKD 41

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG1656|consensus	221		99.93
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.54
PTZ00464	211	SNF-7-like protein; Provisional	98.98
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	96.78
PF10115	91	HlyU: Transcriptional activator HlyU; InterPro: IP	94.87
COG5453	96	Uncharacterized conserved protein [Function unknow	94.66
KOG2910|consensus	209		92.84
KOG1655|consensus	218		89.97
PRK09343	121	prefoldin subunit beta; Provisional	85.07
PRK13989	84	cell division topological specificity factor MinE;	84.08
KOG2911|consensus	439		80.32
PRK13991	87	cell division topological specificity factor MinE;	80.05

>KOG1656|consensus

Probab=99.93  E-value=9.1e-26  Score=160.21  Aligned_cols=64  Identities=61%  Similarity=0.789  Sum_probs=60.3

Q ss_pred             CchhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchhhhhhc
Q psy13000          1 MSFFKNIFGKT-EEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINI-ARTNGTKNKREFDHN   64 (65)
Q Consensus         1 Ms~~~~~FG~~-~~~~~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~-AKk~~~kNKr~Al~~   64 (65)
                      ||+|++||||. +..+++|++||++||||++||+|||+||++||++|++. |++|++||||+|||.
T Consensus         1 ms~~~~~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~Alqa   66 (221)
T KOG1656|consen    1 MSMFSRLFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQA   66 (221)
T ss_pred             CcHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            89999999985 57889999999999999999999999999999999777 999999999999973

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.54  E-value=1.8e-14  Score=100.58  Aligned_cols=58  Identities=33%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             hhhcCCCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhhh
Q psy13000          6 NIFGKTEEKG----------PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR-EFDH   63 (65)
Q Consensus         6 ~~FG~~~~~~----------~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~~kNKr-~Al~   63 (65)
                      .|||+++.+|          .+|.+||.+||+++++|+||+.||+++|+.+...||+++.+||+ +|++
T Consensus         3 ~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~   71 (191)
T PTZ00446          3 FWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKI   71 (191)
T ss_pred             cccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            4899643322          36999999999999999999999999999999999999988887 6764

>PTZ00464 SNF-7-like protein; Provisional

Probab=98.98  E-value=1.5e-09  Score=76.48  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=47.3

Q ss_pred             hhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccc------hhhhhh
Q psy13000          5 KNIFGKTE-EKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNG--TKN------KREFDH   63 (65)
Q Consensus         5 ~~~FG~~~-~~~~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~--~kN------Kr~Al~   63 (65)
                      ++|||+++ .+++++.+||..||+++++|+||.    .+|+.|++.||+++  ++|      |+.||+
T Consensus         2 ~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi----~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~   65 (211)
T PTZ00464          2 NRLFGKKNKTPKPTLEDASKRIGGRSEVVDARI----NKIDAELMKLKEQIQRTRGMTQSRHKQRAMQ   65 (211)
T ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            67999854 578999999999999999999999    56999999999998  444      777775

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=96.78  E-value=0.0044  Score=39.89  Aligned_cols=43  Identities=35%  Similarity=0.270  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhhh
Q psy13000         20 EAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK-REFD   62 (65)
Q Consensus        20 ~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~~kNK-r~Al   62 (65)
                      +||.+|+.+...|+++...|+.+|+.....|+++..++. ..|+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~   44 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAK   44 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            689999999999999999999999999999999995544 4554

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function

Probab=94.87  E-value=0.007  Score=38.51  Aligned_cols=15  Identities=40%  Similarity=0.818  Sum_probs=11.9

Q ss_pred             CchhhhhhcCCCCCC
Q psy13000          1 MSFFKNIFGKTEEKG   15 (65)
Q Consensus         1 Ms~~~~~FG~~~~~~   15 (65)
                      ||+|++||||++...
T Consensus         1 M~~~s~LFGg~~~~~   15 (91)
T PF10115_consen    1 MSFFSRLFGGGKKSE   15 (91)
T ss_pred             CcHHHHhhCCCCCCC
Confidence            999999999865433

One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.

>COG5453 Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.01  Score=38.18  Aligned_cols=12  Identities=50%  Similarity=0.980  Sum_probs=10.7

Q ss_pred             CchhhhhhcCCC
Q psy13000          1 MSFFKNIFGKTE   12 (65)
Q Consensus         1 Ms~~~~~FG~~~   12 (65)
                      ||+|+++||+++
T Consensus         1 msffsrlFG~g~   12 (96)
T COG5453           1 MSFFSRLFGGGS   12 (96)
T ss_pred             CcHHHHhhCCCC
Confidence            899999999754

>KOG2910|consensus

Probab=92.84  E-value=0.63  Score=33.53  Aligned_cols=57  Identities=28%  Similarity=0.293  Sum_probs=45.9

Q ss_pred             hhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhhh
Q psy13000          5 KNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKN-KREFD   62 (65)
Q Consensus         5 ~~~FG~~~~~~~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~~kN-Kr~Al   62 (65)
                      +.+||+ +..-.....||..|..+-+-|-+=+.-|++.|+.|...||+....+ |..|+
T Consensus         2 G~lfsK-~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAl   59 (209)
T KOG2910|consen    2 GNLFSK-KSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRAL   59 (209)
T ss_pred             CccccC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            567874 3334557789999999999999999999999999999999999444 44454

>KOG1655|consensus

Probab=89.97  E-value=1.8  Score=31.34  Aligned_cols=36  Identities=31%  Similarity=0.497  Sum_probs=21.9

Q ss_pred             hhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000          5 KNIFGKTE--EKGPTTGEAIQKLRETEDMLIKKQEFLE   40 (65)
Q Consensus         5 ~~~FG~~~--~~~~~~~~aI~kLret~emL~KKe~~Le   40 (65)
                      .|+||.++  .++|+-.+||..+...-+-+++|-.-|.
T Consensus         2 nRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLD   39 (218)
T KOG1655|consen    2 NRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLD   39 (218)
T ss_pred             cccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            68999754  4567777777766544444444444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=85.07  E-value=3.3  Score=26.65  Aligned_cols=43  Identities=16%  Similarity=-0.021  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhh
Q psy13000         19 GEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNG-TKNKREF   61 (65)
Q Consensus        19 ~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~-~kNKr~A   61 (65)
                      .+-|.-+...+.-|+|++++|++++.+....-+... .-++++|
T Consensus        77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~  120 (121)
T PRK09343         77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG  120 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            344556667788889999999999988777777766 4455543

>PRK13989 cell division topological specificity factor MinE; Provisional

Probab=84.08  E-value=0.47  Score=29.37  Aligned_cols=11  Identities=27%  Similarity=0.582  Sum_probs=9.4

Q ss_pred             CchhhhhhcCC
Q psy13000          1 MSFFKNIFGKT   11 (65)
Q Consensus         1 Ms~~~~~FG~~   11 (65)
                      ||+|.+|||++
T Consensus         1 M~l~~~f~~~k   11 (84)
T PRK13989          1 MSILSFLLGEK   11 (84)
T ss_pred             CchHHHhhcCC
Confidence            89999999953

>KOG2911|consensus

Probab=80.32  E-value=5.4  Score=31.61  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhhh
Q psy13000         18 TGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR-EFDH   63 (65)
Q Consensus        18 ~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~~kNKr-~Al~   63 (65)
                      ..-+|..|+.+...|.++-++|++.|+.--..+|....++++ .|+.
T Consensus       231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~  277 (439)
T KOG2911|consen  231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAIT  277 (439)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            345788999999999999999999999999999999976665 4664

>PRK13991 cell division topological specificity factor MinE; Provisional

Probab=80.05  E-value=2.1  Score=26.76  Aligned_cols=50  Identities=20%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             CchhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Q psy13000          1 MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKK----QEFLEKKIGEEINIARTNG   54 (65)
Q Consensus         1 Ms~~~~~FG~~~~~~~~~~~aI~kLret~emL~KK----e~~LekkI~~E~~~AKk~~   54 (65)
                      ||+|.+|||++  .+.|..-|=.+|+  +-+-..|    -++|+.==.+=++-..+|+
T Consensus         1 M~~l~~~f~~k--~~~Sa~~AKeRLq--liLahdR~~~~p~~l~~lk~eil~VIsKYv   54 (87)
T PRK13991          1 MSFLDGLFGRK--RDSSSELAKQRLL--TVLVHDRVKLTPEMMEQMKADLAEVIKRYV   54 (87)
T ss_pred             CChHHHhhcCC--CCCcHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence            89999999953  2334444444443  3333344    2555532223334444554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	65
4abm_A	79	Crystal Structure Of Chmp4b Hairpin Length = 79		1e-09

>pdb|4ABM|A Chain A, Crystal Structure Of Chmp4b Hairpin Length = 79

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 36/45 (80%)
Query: 15 GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          G    EAIQ+LR+TE+ML KKQEFLEKKI +E+  A+ +GTKNKR
Sbjct: 1  GAMEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKR 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	8e-11

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Length = 79

 Score = 51.1 bits (122), Expect = 8e-11
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query: 15 GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
          G    EAIQ+LR+TE+ML KKQEFLEKKI +E+  A+ +GTKNKR
Sbjct: 1  GAMEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKR 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.68
1aq5_A	47	Matrilin-1, CMP, cartilage matrix protein; coiled-	80.65
2kxo_A	95	Cell division topological specificity factor; MINE	80.03

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.68  E-value=4.4e-17  Score=99.35  Aligned_cols=49  Identities=59%  Similarity=0.798  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh
Q psy13000         15 GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKREFDH   63 (65)
Q Consensus        15 ~~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~~kNKr~Al~   63 (65)
                      +|||.+||.+||++++||+|+++||+++|++|++.||+++++||++|++
T Consensus         1 ~p~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~   49 (79)
T 4abm_A            1 GAMEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQ   49 (79)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            5899999999999999999999999999999999999999999999985

>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1

Probab=80.65  E-value=4  Score=22.38  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000         17 TTGEAIQKLRETEDMLIKKQEFLEKKI   43 (65)
Q Consensus        17 ~~~~aI~kLret~emL~KKe~~LekkI   43 (65)
                      ++.++|+.|-..++-+.+|-+.||.+|
T Consensus        20 ~v~~~l~~Lt~kL~~vt~rle~lEnrl   46 (47)
T 1aq5_A           20 KVEELINTLQQKLEAVAKRIEALENKI   46 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            367889999999999999999999886

>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}

Probab=80.03  E-value=0.33  Score=29.79  Aligned_cols=10  Identities=40%  Similarity=0.893  Sum_probs=9.1

Q ss_pred             CchhhhhhcC
Q psy13000          1 MSFFKNIFGK   10 (65)
Q Consensus         1 Ms~~~~~FG~   10 (65)
                      ||+|..|||+
T Consensus         1 M~l~~~f~~k   10 (95)
T 2kxo_A            1 MSLIELLFGR   10 (95)
T ss_dssp             CCHHHHHTCS
T ss_pred             CchHHHhccC
Confidence            8999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00