Psyllid ID: psy13005


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
MVESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEMLYLKNKKL
ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccHHHHHHHHHcccccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEHHHHHHcccHccccccccccccccHHHHHHHHEcccccc
mvestpsptpsranngFVLYLASTIMFVVYLIWAFIPDSILYYFGltylpqkywaiaVPIYGMVLLFVFVMFFYpcinmsltpvrdspnvmidsfslsdkketvpggipsacdipiSTVCEMLYLKNKKL
mvestpsptpsranNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMsltpvrdspnVMIDSFSLsdkketvpggipsacdipisTVCEMLYLKNKKL
MVESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGmvllfvfvmffYPCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEMLYLKNKKL
**************NGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFS*******VPGGIPSACDIPISTVCEMLYL*****
************ANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFSLSD******GGIPSACDIPISTVCEMLYLK****
***********RANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEMLYLKNKKL
******SPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEMLYLKN***
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEMLYLKNKKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query130 2.2.26 [Sep-21-2011]
Q5R946134 Phosphatidylinositol N-ac yes N/A 0.984 0.955 0.446 4e-24
Q9JHG1132 Phosphatidylinositol N-ac yes N/A 0.984 0.969 0.431 5e-24
P57054158 Phosphatidylinositol N-ac yes N/A 0.984 0.810 0.446 6e-24
O64792137 Phosphatidylinositol N-ac no N/A 0.830 0.788 0.330 3e-10
O13904195 Meiotically up-regulated no N/A 0.723 0.482 0.303 2e-08
>sp|Q5R946|PIGP_PONAB Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Pongo abelii GN=PIGP PE=2 SV=1 Back     alignment and function desciption
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 88/132 (66%), Gaps = 4/132 (3%)

Query: 1   MVESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPI 60
           MVE++PSP P RA  GFVL+L+S   F++YL+WAFIP+S L   GLTY PQKYWA+A+P+
Sbjct: 1   MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPV 60

Query: 61  YGMVLLFV-FVMFFYPCINMSLTPVRDSPNVMIDSFSLSDK-KETVPGGIPSACDIPIST 118
           Y ++ + + +V+ F   INM  T   DS + + D+++ + + K+     IP+  DI IS 
Sbjct: 61  YLLIAIVIGYVLLF--GINMMSTSPLDSIHTITDNYARNQRQKKYQEEAIPALRDISISE 118

Query: 119 VCEMLYLKNKKL 130
           V +M +L  K+L
Sbjct: 119 VNQMFFLAAKEL 130




Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Pongo abelii (taxid: 9601)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 9EC: 8
>sp|Q9JHG1|PIGP_MOUSE Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Mus musculus GN=Pigp PE=2 SV=1 Back     alignment and function description
>sp|P57054|PIGP_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Homo sapiens GN=PIGP PE=1 SV=3 Back     alignment and function description
>sp|O64792|PIGP_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Arabidopsis thaliana GN=At1g61280 PE=2 SV=1 Back     alignment and function description
>sp|O13904|MUG84_SCHPO Meiotically up-regulated gene 84 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug84 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
240849615136 phosphatidylinositol glycan, class P-lik 0.969 0.926 0.503 9e-29
380027375127 PREDICTED: phosphatidylinositol N-acetyl 0.976 1.0 0.492 1e-28
328787440127 PREDICTED: phosphatidylinositol N-acetyl 0.969 0.992 0.488 1e-28
332029589127 Phosphatidylinositol N-acetylglucosaminy 0.969 0.992 0.468 1e-27
307202017129 Phosphatidylinositol N-acetylglucosaminy 0.984 0.992 0.453 3e-27
383850265146 PREDICTED: phosphatidylinositol N-acetyl 0.984 0.876 0.449 2e-26
348556347 448 PREDICTED: hypothetical protein LOC10071 0.984 0.285 0.462 6e-26
242014398142 Phosphatidylinositol N-acetylglucosaminy 0.992 0.908 0.457 6e-26
239049727128 phosphatidylinositol glycan anchor biosy 0.969 0.984 0.453 7e-25
403271531134 PREDICTED: phosphatidylinositol N-acetyl 0.984 0.955 0.446 3e-23
>gi|240849615|ref|NP_001155421.1| phosphatidylinositol glycan, class P-like [Acyrthosiphon pisum] gi|239790457|dbj|BAH71789.1| ACYPI001350 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 82/127 (64%), Gaps = 1/127 (0%)

Query: 3   ESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYG 62
           ++TPSPT SRAN GF LYLAS   FVVYL WAFIP   L   GLTYLPQKYWAI +P++ 
Sbjct: 9   QNTPSPTESRANYGFALYLASKTAFVVYLAWAFIPSHWLECIGLTYLPQKYWAITIPVW- 67

Query: 63  MVLLFVFVMFFYPCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEM 122
           +    V +   YP +NM L P  + P ++ DS++     E  PGGIP+  D+ +S VC+ 
Sbjct: 68  VCCFIVAITLLYPAVNMLLVPPMNDPRILTDSYARETINEVRPGGIPTVSDLDLSEVCKT 127

Query: 123 LYLKNKK 129
           LYL +K 
Sbjct: 128 LYLDSKN 134




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027375|ref|XP_003697402.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Apis florea] Back     alignment and taxonomy information
>gi|328787440|ref|XP_003250949.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|332029589|gb|EGI69478.1| Phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307202017|gb|EFN81581.1| Phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383850265|ref|XP_003700716.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|348556347|ref|XP_003463984.1| PREDICTED: hypothetical protein LOC100715662 [Cavia porcellus] Back     alignment and taxonomy information
>gi|242014398|ref|XP_002427878.1| Phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative [Pediculus humanus corporis] gi|212512347|gb|EEB15140.1| Phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|239049727|ref|NP_001155061.1| phosphatidylinositol glycan anchor biosynthesis, class P [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|403271531|ref|XP_003927676.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Saimiri boliviensis boliviensis] gi|403271533|ref|XP_003927677.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Saimiri boliviensis boliviensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
RGD|1307205160 Pigp "phosphatidylinositol gly 0.992 0.806 0.427 3.8e-23
MGI|MGI:1860433132 Pigp "phosphatidylinositol gly 0.992 0.977 0.419 6.1e-23
UNIPROTKB|F1SGV8130 PIGP "Uncharacterized protein" 0.984 0.984 0.438 1.6e-22
UNIPROTKB|P57054158 PIGP "Phosphatidylinositol N-a 0.992 0.816 0.435 2.1e-22
UNIPROTKB|F1P0U0148 PIGP "Uncharacterized protein" 0.976 0.858 0.403 1.3e-20
DICTYBASE|DDB_G0272006 602 DDB_G0272006 "unknown" [Dictyo 0.869 0.187 0.396 6.1e-18
ASPGD|ASPL0000016851357 pigP [Emericella nidulans (tax 0.407 0.148 0.407 1.8e-12
UNIPROTKB|G4MSD7277 MGG_04460 "PIG-P domain-contai 0.423 0.198 0.428 5.1e-12
WB|WBGene00013001 890 Y48E1B.2 [Caenorhabditis elega 0.430 0.062 0.517 2.3e-11
UNIPROTKB|O18196 890 Y48E1B.2 "Protein Y48E1B.2, is 0.430 0.062 0.517 2.3e-11
RGD|1307205 Pigp "phosphatidylinositol glycan anchor biosynthesis, class P" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 56/131 (42%), Positives = 82/131 (62%)

Query:     1 MVESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPI 60
             MVE++PSP P RA  GFVL+L+S   F++YL+WAF+P+S L   GLTY PQKYWA+A+P+
Sbjct:    29 MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFVPESWLNSLGLTYWPQKYWAVALPV 88

Query:    61 YGXXXXXXXXXXXYPCINMSLTPVRDSPNVMIDSFSLSDKKETVP-GGIPSACDIPISTV 119
             Y            +  INM  T   DS + + D+++ + ++++     IP+  DIPIS V
Sbjct:    89 YLLITVVIGYVLLFG-INMMSTSPLDSIHTITDNYAKNQQRKSYQEDAIPALRDIPISEV 147

Query:   120 CEMLYLKNKKL 130
               M +L  K+L
Sbjct:   148 NRMFFLDAKEL 158




GO:0000506 "glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex" evidence=ISO
GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO
GO:0006506 "GPI anchor biosynthetic process" evidence=IEA;ISO
GO:0017176 "phosphatidylinositol N-acetylglucosaminyltransferase activity" evidence=ISO
MGI|MGI:1860433 Pigp "phosphatidylinositol glycan anchor biosynthesis, class P" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGV8 PIGP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P57054 PIGP "Phosphatidylinositol N-acetylglucosaminyltransferase subunit P" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0U0 PIGP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272006 DDB_G0272006 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016851 pigP [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MSD7 MGG_04460 "PIG-P domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00013001 Y48E1B.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O18196 Y48E1B.2 "Protein Y48E1B.2, isoform a" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R946PIGP_PONAB2, ., 4, ., 1, ., 1, 9, 80.44690.98460.9552yesN/A
Q9JHG1PIGP_MOUSE2, ., 4, ., 1, ., 1, 9, 80.43180.98460.9696yesN/A
P57054PIGP_HUMAN2, ., 4, ., 1, ., 1, 9, 80.44690.98460.8101yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.4.1.1980.914
3rd Layer2.4.10.921

Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
pfam08510123 pfam08510, PIG-P, PIG-P 6e-32
>gnl|CDD|219875 pfam08510, PIG-P, PIG-P Back     alignment and domain information
 Score =  109 bits (274), Expect = 6e-32
 Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 10  PSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVF 69
           P+R   GFVLY+ ST++FV+YL+WAF+PD +L+  G+TY P +YWA+A+PIY +++  ++
Sbjct: 1   PTREYYGFVLYILSTLLFVLYLLWAFLPDPVLHSLGITYYPSRYWALAIPIY-LLMAMLY 59

Query: 70  VMFFYPCINMSLTPVRDSPNVMIDSFSLSDK--------KETVPGGIPSACDIPISTVCE 121
               Y   N+ LTP  DS   + D ++             E     IP   D+PIS V  
Sbjct: 60  AYVGYALYNLVLTPPLDSLETITDEYARVLDEDDDADFEDEEKEKSIPGVYDLPISEVNR 119

Query: 122 MLYL 125
           +LY 
Sbjct: 120 LLYG 123


PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis. Length = 123

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 130
PF08510126 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphati 100.0
KOG2257|consensus135 100.0
PF0729778 DPM2: Dolichol phosphate-mannose biosynthesis regu 97.78
KOG3488|consensus81 95.15
TIGR0133280 cyt_b559_alpha cytochrome b559, alpha subunit. Seq 80.35
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [] Back     alignment and domain information
Probab=100.00  E-value=1.1e-49  Score=292.08  Aligned_cols=115  Identities=42%  Similarity=0.784  Sum_probs=107.1

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhhccChHHHHHcCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q psy13005         10 PSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPN   89 (130)
Q Consensus        10 ~~re~yGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWalaiP~~~l~~~~~~~~~~y~~~n~~~T~plds~~   89 (130)
                      |+||+|||++|++|+++|++|++||++||++||++|+|||||||||+|+|+|++|+++++|++ |.++|+++|+|+||++
T Consensus         1 p~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~-y~~~N~~~T~pld~~~   79 (126)
T PF08510_consen    1 PSREYYGFVLYILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVG-YPAYNLVLTPPLDSLR   79 (126)
T ss_pred             CCceeeehHHHHHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCccc
Confidence            799999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             ccccCCCccc-c-------CCCCC---CCCCCcccCCHHHHHHHHhc
Q psy13005         90 VMIDSFSLSD-K-------KETVP---GGIPSACDIPISTVCEMLYL  125 (130)
Q Consensus        90 tI~D~~a~~~-~-------~~~~~---~~ip~i~DlPi~~Vn~~LY~  125 (130)
                      ||+|++++.. .       ++...   +++|+++||||++|||+||+
T Consensus        80 ti~D~~~~~~~~~~~~~~~~~~~~~~~~~ip~i~Dlpi~~Vn~~Ly~  126 (126)
T PF08510_consen   80 TITDEYARVPDEDDDSSFEDENAFKEKKPIPPIRDLPITEVNRVLYG  126 (126)
T ss_pred             eeeccccccccccccccccccccccccCCCCCCccCCHHHHHHHHcC
Confidence            9999999876 1       11111   46999999999999999996



>KOG2257|consensus Back     alignment and domain information
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins Back     alignment and domain information
>KOG3488|consensus Back     alignment and domain information
>TIGR01332 cyt_b559_alpha cytochrome b559, alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
3arc_E83 Cytochrome B559 subunit alpha; PSII, membrane-prot 92.81
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E* Back     alignment and structure
Probab=92.81  E-value=0.13  Score=34.46  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             chhH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q psy13005         52 KYWA---IAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPN   89 (130)
Q Consensus        52 kyWa---laiP~~~l~~~~~~~~~~y~~~n~~~T~plds~~   89 (130)
                      |||.   |.||++++.+.+|...+  .+|+..-||..|..-
T Consensus        17 RYWvIHsITIPslFiaGwLFVstG--LaYdvFGtPrpneYf   55 (83)
T 3arc_E           17 RYWVIHSITIPALFIAGWLFVSTG--LAYDVFGTPRPDSYY   55 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHTCCCTTSSS
T ss_pred             eeEEEEeeccchHHHhhhhhhccC--cceeccCCCCccccc
Confidence            7884   69999999999988776  688888999876543




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
d2axte182 Cytochrome b559 subunit alpha, PsbE {Thermosynecho 93.48
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Cytochrome b559 subunits
family: Cytochrome b559 subunits
domain: Cytochrome b559 subunit alpha, PsbE
species: Thermosynechococcus elongatus [TaxId: 146786]
Probab=93.48  E-value=0.048  Score=34.95  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             chhH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q psy13005         52 KYWA---IAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPNV   90 (130)
Q Consensus        52 kyWa---laiP~~~l~~~~~~~~~~y~~~n~~~T~plds~~t   90 (130)
                      |||.   |.||++++.+.+|...+  .+|+..-||..|..-+
T Consensus        16 RYWvIHsiTIPslFiaGwlFVstG--LAYdvFGtPrPneYft   55 (82)
T d2axte1          16 RYWVIHSITIPALFIAGWLFVSTG--LAYDVFGTPRPDSYYA   55 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHTTCCCTTCSSC
T ss_pred             eEEEEEeecccHHHHhhhhheecc--cchhhcCCCCcccccc
Confidence            7884   68999999999988776  6888899998776443