Psyllid ID: psy13063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
CFIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI
Secondary Structure (PSIPRED)
ccEEEEEEEEccccccccccccccEEEEccEEEEEEEccEEEEEcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcEEEEEEEccEEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHcHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEHHHHcccEEEccccccccccHHHEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEccccccccccccccccccccccccccccccEEEEEcccccccccccHccHHHHHHHHHHHHHHHHHHHHHccccEEEccccEEcccEEEEEEEEEccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
cfiecfivcfshsyrgsgvssptnvsvyNTTLFRrisfgvcgrftsaeLFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKvatrpaenpvgLVAKRfhmggvardapklslpgklvfpslhqtghfsmlrglgdivmpGLLLCFVLRYDAykksqllhlglgdivmPGLLLCFVLRYDAYKksqllhlgetgipaprhlsriSYFHCSLIGYFLGLLTATVSSEIFKAAQPallylvpftllpLLTMAYLKGDLrrmwsepfiivppskhmdi
Flexible Loop (DISEMBL)
CFIECFIVCFshsyrgsgvssptnVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWsepfiivppskhmdi
Low Complexity Region (SEG)
CFIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAElfsfslslfIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVStllltgllIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQpallylvpftllpllTMAYLKGDLRRMWSEPFIIVPPSKHMDI
Disordered region (IsUnstruct)
*FIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIV********
Disordered Region (DISOPRED)
CFIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENP**LVA**FHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLH*********RHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSE*************
Disordered Region (DISEMBL)
CFIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI
Disordered Region (DISPRO)
CFIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQ***************SRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEP************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CFIECFIVCFSHSYRGSGVSSPTNVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9CUS9	384	Signal peptide peptidase-	yes	N/A	0.753	0.619	0.665	8e-96
Q8TCT6	385	Signal peptide peptidase-	yes	N/A	0.753	0.618	0.665	3e-95
Q7G7C7	371	Signal peptide peptidase-	yes	N/A	0.772	0.657	0.369	7e-42
Q93Z32	372	Signal peptide peptidase-	yes	N/A	0.731	0.620	0.364	5e-40
Q5N808	523	Signal peptide peptidase-	no	N/A	0.645	0.390	0.290	2e-23
Q5Z413	542	Signal peptide peptidase-	no	N/A	0.604	0.352	0.300	1e-20
Q0DWA9	545	Signal peptide peptidase-	no	N/A	0.556	0.322	0.293	5e-19
B9FJ61	343	Signal peptide peptidase	no	N/A	0.556	0.513	0.312	6e-19
P34248	587	Probable intramembrane pr	yes	N/A	0.667	0.359	0.290	6e-19
Q8W469	540	Signal peptide peptidase-	no	N/A	0.541	0.316	0.292	8e-19

>sp|Q9CUS9|SPPL3_MOUSE Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=2 SV=3

 Score =  350 bits (898), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 213/278 (76%), Gaps = 40/278 (14%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFG CGRFT+AEL SFSLS+ +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKV
Sbjct: 129 NKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKV 188

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKL 152
           S LLL+GLLIYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+L
Sbjct: 189 SCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRL 248

Query: 153 SLPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPG 211
           SLPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK        GD     
Sbjct: 249 SLPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKKQ-----ASGD----- 295

Query: 212 LLLCFVLRYDAYKKSQLLHLGETGIPAPRHLS----RISYFHCSLIGYFLGLLTATVSSE 267
                                  G P P ++S    ++SYFHC+LIGYF+GLLTATV+S 
Sbjct: 296 ---------------------SCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASR 334

Query: 268 IFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF 305
           I +AAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF
Sbjct: 335 IHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF 372

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q8TCT6|SPPL3_HUMAN Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=1 SV=1

 Score =  348 bits (893), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 213/278 (76%), Gaps = 40/278 (14%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFG CGRFT+AEL SFSLS+ +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKV
Sbjct: 130 NKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKV 189

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKL 152
           S LLL+GLLIYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+L
Sbjct: 190 SCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRL 249

Query: 153 SLPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPG 211
           SLPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK        GD     
Sbjct: 250 SLPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKKQ-----ASGD----- 296

Query: 212 LLLCFVLRYDAYKKSQLLHLGETGIPAPRHLS----RISYFHCSLIGYFLGLLTATVSSE 267
                                  G P P ++S    ++SYFHC+LIGYF+GLLTATV+S 
Sbjct: 297 ---------------------SCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASR 335

Query: 268 IFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF 305
           I +AAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF
Sbjct: 336 IHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPF 373

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q7G7C7|SIPL1_ORYSJ Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica GN=SPPL1 PE=2 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 153/271 (56%), Gaps = 27/271 (9%)

Query: 44  FTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLI 103
           FT  +    ++ +  V  W+++GHWLL + +G+ +C+AF++ VRLP++K+  LLL  L +
Sbjct: 125 FTRLQGLLVAICVGTVVAWLVSGHWLLNNLLGISICIAFVSHVRLPNIKICALLLVCLFV 184

Query: 104 YDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSL 163
           YDVFWVFFS   F  NVMV VAT+ A NPV  VA +  + G+     KL LP KLVFP  
Sbjct: 185 YDVFWVFFSERFFGANVMVSVATQKASNPVHTVANKLSLPGLQLITKKLELPVKLVFPR- 243

Query: 164 HQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAY 223
                 S++ GL     PG                 + LGLGD+ +PG+LL  VL +D +
Sbjct: 244 ------SLMGGLAPGSSPG---------------DYMMLGLGDMAIPGMLLALVLSFD-H 281

Query: 224 KKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFT 283
           +K + + + +   P+ +      Y   +L GY +GL+TA  +  + ++ QPALLYLVP T
Sbjct: 282 RKIKDMSVSQDMPPSKQR----KYVWYALTGYGVGLVTALAAGILSQSPQPALLYLVPST 337

Query: 284 LLPLLTMAYLKGDLRRMWSEPFIIVPPSKHM 314
           L P++ M++L+ +L  +W     I+    H+
Sbjct: 338 LGPVMYMSWLRNELWELWEGSRPIINDKAHL 368

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q93Z32|SIPL1_ARATH Signal peptide peptidase-like 1 OS=Arabidopsis thaliana GN=SPPL1 PE=2 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 143/258 (55%), Gaps = 27/258 (10%)

Query: 59  VCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFST 118
           V  W+++GHW+L + +G+ +C+AF++ VRLP++K+  +LL  L +YD+FWVFFS   F  
Sbjct: 140 VVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGA 199

Query: 119 NVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDI 178
           NVMV VAT+ A NPV  VA   ++ G+     KL LP K+VFP           R L   
Sbjct: 200 NVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIVFP-----------RNLLGG 248

Query: 179 VMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPA 238
           V+PG+             S  + LGLGD+ +P +LL  VL +D  K   ++++ +     
Sbjct: 249 VVPGV-----------SASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDL---- 293

Query: 239 PRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLR 298
            +      Y   +L GY +GL+ A  +  +  + QPALLYLVP TL P++ M++ + DL 
Sbjct: 294 -KSSKGHKYIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFMSWRRKDLA 352

Query: 299 RMWSEPFIIVPPSKHMDI 316
            +W  P +  P  K  +I
Sbjct: 353 ELWEGPALSNPIEKSHEI 370

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 114/272 (41%), Gaps = 68/272 (25%)

Query: 35  RISFGVCGRFTSAELFSFSLSLFIVCIWVLTGH----WLLMDAMGMGLCVAFIAFVRLPS 90
           +++  V G  T   L    L+L  V +W +  +    W+  D MG+ + +  +  V LP+
Sbjct: 313 KVALPVLGNVTVVTLVILPLALIFVVVWAVHQNSPFAWVGQDLMGICMMILVLQVVHLPN 372

Query: 91  LKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAP 150
           +KV+T LL    +YD+FWVF S +IF  +VM+ VA    E P                  
Sbjct: 373 IKVATALLVSAFMYDIFWVFISPFIFKKSVMITVARGSDEGP------------------ 414

Query: 151 KLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMP 210
             SLP  L  P    T +   + G GDI+ PGLL+ F  RYD      L           
Sbjct: 415 --SLPMVLKMPKEFDTWNGYDMIGFGDILFPGLLVAFSFRYDRANGKDLTD--------- 463

Query: 211 GLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFK 270
                                               YF C +IGY  GL    V   + K
Sbjct: 464 -----------------------------------GYFLCLMIGYAFGLSCTYVGLYLMK 488

Query: 271 AAQPALLYLVPFTLLPLLTMAYLKGDLRRMWS 302
           + QPALLYLVP TL  ++T+   +G+L ++W+
Sbjct: 489 SGQPALLYLVPSTLGTIVTLGAKRGELSQLWN 520

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 72/263 (27%)

Query: 61  IWVLTGH----WLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIF 116
           +W +  H    W+  D +G+ L +  I  VR+P+LKV ++LL+    YD+FWVF S   F
Sbjct: 334 LWAVHRHFTYAWIGQDILGIALIITVIQIVRVPNLKVGSVLLSCAFFYDIFWVFVSKRWF 393

Query: 117 STNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQT-GHFSMLRGL 175
             +VM+ VA     +  G                   +P  L  P +    G +S++ G 
Sbjct: 394 HESVMIVVARGDKTDEDG-------------------VPMLLKIPRMFDPWGGYSII-GF 433

Query: 176 GDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETG 235
           GDI++PGLL+ F LRYD   K  L                                 +TG
Sbjct: 434 GDILLPGLLVAFALRYDWAAKKSL---------------------------------QTG 460

Query: 236 IPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKA-AQPALLYLVPFTLLPLLTMAYLK 294
                      YF  S++ Y  GLL   V+  +     QPALLY+VPFTL  L+++ + +
Sbjct: 461 -----------YFLWSMVAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGALISLGWKR 509

Query: 295 GDLRRMWS--EPFIIVPPSKHMD 315
           G+L  +WS  EP  + P   HM 
Sbjct: 510 GELWNLWSKGEPERVCPHHMHMQ 532

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q0DWA9|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 66/242 (27%)

Query: 64  LTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVK 123
           +T  W+  D +G+ L V  I  VR+P+LKV ++LL+   +YD+FWVF S   F  +VM+ 
Sbjct: 342 MTYAWIGQDILGIALIVTVIQIVRIPNLKVGSVLLSCSFLYDIFWVFISKMWFHESVMIV 401

Query: 124 VATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQT-GHFSMLRGLGDIVMPG 182
           VA     +  G                   +P  L  P +    G FS++ G GDI++PG
Sbjct: 402 VARGDKTDEDG-------------------VPMLLKIPRMFDPWGGFSII-GFGDILLPG 441

Query: 183 LLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHL 242
           LL+ F LRYD   K  L                                           
Sbjct: 442 LLIAFALRYDWAAKKTL------------------------------------------- 458

Query: 243 SRISYFHCSLIGYFLGLLTATVSSEIFKA-AQPALLYLVPFTLLPLLTMAYLKGDLRRMW 301
            +  YF  S++ Y  GL+   V+  +     QPALLY+VPFTL   + +   +G+LR +W
Sbjct: 459 -QSGYFLWSMVAYGSGLMITYVALNLMDGHGQPALLYIVPFTLGTFIALGRKRGELRNLW 517

Query: 302 SE 303
           + 
Sbjct: 518 TR 519

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|B9FJ61|SIP2_ORYSJ Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 111/259 (42%), Gaps = 83/259 (32%)

Query: 24  NVSVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIW-VLTGHWLLMDAMGMGLCVAF 82
           N  V+   LF  +S      FT +++ + S+  F  CIW     HWL  + +G+  C+  
Sbjct: 121 NAIVWRAPLFHSLSV----EFTRSQVVA-SIPGFFFCIWYAAKKHWLANNVLGISFCIQG 175

Query: 83  IAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHM 142
           I  + L S K   +LL+GL  YD+FWVFF      T VMV VA            K F  
Sbjct: 176 IEMLSLGSFKTGAILLSGLFFYDIFWVFF------TPVMVSVA------------KSF-- 215

Query: 143 GGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHL 202
                DAP      KL+FP+      FSML GLGDIV+PG+ +   LR+D  +       
Sbjct: 216 -----DAPI-----KLLFPTGDAARPFSML-GLGDIVIPGIFVALALRFDVSR------- 257

Query: 203 GLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTA 262
                                           GI       +  YF+ + +GY +GL   
Sbjct: 258 --------------------------------GI-------KNRYFNSAFLGYTVGLTVT 278

Query: 263 TVSSEIFKAAQPALLYLVP 281
            +    F+AAQPALLY+VP
Sbjct: 279 IIVMNWFQAAQPALLYIVP 297

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P34248|YKK0_YEAST Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 121/272 (44%), Gaps = 61/272 (22%)

Query: 45  TSAELFSFSLSLFIVCIWVLT-GHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLI 103
            SA + SF LS+     + L+   WL+ +A+ M + +  IA ++L +LK   L+L  L  
Sbjct: 305 NSALIVSFVLSIVSTVYFYLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFF 364

Query: 104 YDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAP-KLSLPGKLVFPS 162
           YD+       ++F T+VMV VAT                     D P KLSLP K  F +
Sbjct: 365 YDI------CFVFGTDVMVTVATN-------------------LDIPVKLSLPVK--FNT 397

Query: 163 LHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDA 222
                +FS+L GLGDI +PG+ +    +YD +K     HL   D     L   +V +   
Sbjct: 398 AQNNFNFSIL-GLGDIALPGMFIAMCYKYDIWK----WHLDHDDTEFHFLNWSYVGK--- 449

Query: 223 YKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPF 282
                                   YF  +++ Y   L++A VS  IF  AQPALLY+VP 
Sbjct: 450 ------------------------YFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPS 485

Query: 283 TLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHM 314
            L+  + +A    D ++ W+  +  +   K +
Sbjct: 486 LLISTILVACWNKDFKQFWNFQYDTIEVDKSL 517

May act as intramembrane protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 68/239 (28%)

Query: 68  WLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVA-- 125
           W+  D +G+ L +  +  V +P+LKV T+LL+   +YD+FWVF S  +F  +VM+ VA  
Sbjct: 348 WIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMIVVARG 407

Query: 126 TRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLL 185
            +  E+ + ++ K           P++  P           G +S++ G GDI++PGLL+
Sbjct: 408 DKSGEDGIPMLLK----------IPRMFDP----------WGGYSII-GFGDILLPGLLI 446

Query: 186 CFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRI 245
            F LRYD      L                                            R 
Sbjct: 447 AFALRYDWLANKTL--------------------------------------------RT 462

Query: 246 SYFHCSLIGYFLGLLTATVSSEIFKA-AQPALLYLVPFTLLPLLTMAYLKGDLRRMWSE 303
            YF  +++ Y LGLL   V+  +     QPALLY+VPFTL  +LT+A  + DL  +W++
Sbjct: 463 GYFIWAMVAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTMLTLARKRDDLWILWTK 521

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
193673846	386	PREDICTED: signal peptide peptidase-like	0.797	0.652	0.787	1e-122
307180371	394	Signal peptide peptidase-like 3 [Campono	0.800	0.642	0.795	1e-122
48116446	393	PREDICTED: signal peptide peptidase-like	0.800	0.643	0.781	1e-121
350407569	393	PREDICTED: signal peptide peptidase-like	0.800	0.643	0.781	1e-121
242013387	372	conserved hypothetical protein [Pediculu	0.800	0.680	0.763	1e-121
383855912	393	PREDICTED: signal peptide peptidase-like	0.800	0.643	0.771	1e-120
156549607	395	PREDICTED: signal peptide peptidase-like	0.803	0.643	0.781	1e-120
427792693	423	Putative conserved membrane protein, par	0.797	0.595	0.766	1e-119
170051556	413	signal peptide peptidase [Culex quinquef	0.800	0.612	0.75	1e-117
321474528	396	hypothetical protein DAPPUDRAFT_314171 [	0.800	0.638	0.742	1e-117

>gi|193673846|ref|XP_001949884.1| PREDICTED: signal peptide peptidase-like 3-like [Acyrthosiphon pisum]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/283 (78%), Positives = 240/283 (84%), Gaps = 31/283 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFG+CGRFT AEL SFS++LFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 135 NKISFGICGRFTMAELLSFSMALFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 194

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           STLLLTGLLIYDVFWVFFSSYIF+TNVMVKVATR AENPVG+VA++ H+GGVA++AP+LS
Sbjct: 195 STLLLTGLLIYDVFWVFFSSYIFNTNVMVKVATRSAENPVGVVARKLHIGGVAKEAPRLS 254

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPS+H  G FSML GLGDIVMPGLLLCFV+RYDAYKKSQ               
Sbjct: 255 LPGKLVFPSIHN-GRFSML-GLGDIVMPGLLLCFVMRYDAYKKSQ--------------- 297

Query: 214 LCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQ 273
                         LLH GETG+P PRHL RISYFHCSLIGYFLGL+TATVSSEIFKAAQ
Sbjct: 298 --------------LLHFGETGVPPPRHLGRISYFHCSLIGYFLGLVTATVSSEIFKAAQ 343

Query: 274 PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFII  PSKHMD+
Sbjct: 344 PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIQQPSKHMDV 386

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180371|gb|EFN68397.1| Signal peptide peptidase-like 3 [Camponotus floridanus]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/284 (79%), Positives = 237/284 (83%), Gaps = 31/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFGVCGRFT AEL SFSLS+ IVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 141 NKISFGVCGRFTGAELLSFSLSVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 200

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPA+NPV LVA+R H+GGVAR APKL 
Sbjct: 201 STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPADNPVSLVARRLHLGGVARAAPKLP 260

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPS+HQ GHFSML                              GLGD+VMPGLL
Sbjct: 261 LPGKLVFPSMHQAGHFSML------------------------------GLGDVVMPGLL 290

Query: 214 LCFVLRYDAYKKSQLLHLG-ETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
           LCFVLRYDAYKK+QLL  G ETG+P PRH SRISYFHCSLIGYFLGLLTATVSSE+FKAA
Sbjct: 291 LCFVLRYDAYKKTQLLPGGCETGVPPPRHFSRISYFHCSLIGYFLGLLTATVSSEVFKAA 350

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI   PSKHMD+
Sbjct: 351 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFISQQPSKHMDV 394

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48116446|ref|XP_393189.1| PREDICTED: signal peptide peptidase-like 3-like isoform 1 [Apis mellifera] gi|340717514|ref|XP_003397226.1| PREDICTED: signal peptide peptidase-like 3-like isoform 1 [Bombus terrestris] gi|340717516|ref|XP_003397227.1| PREDICTED: signal peptide peptidase-like 3-like isoform 2 [Bombus terrestris] gi|380030598|ref|XP_003698931.1| PREDICTED: signal peptide peptidase-like 3-like [Apis florea]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/284 (78%), Positives = 239/284 (84%), Gaps = 31/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFGVCGRFT AEL SFSLS+ IVCIWVLTGHWLLMDAMGMGLCVAFIAF+RLPSLKV
Sbjct: 140 NKISFGVCGRFTGAELLSFSLSVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFIRLPSLKV 199

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           ST+LLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPA+NPV LVA+R H+GGVAR+APKL 
Sbjct: 200 STILLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPADNPVNLVARRLHLGGVAREAPKLP 259

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPS+HQ GHFSML                              GLGD+VMPGLL
Sbjct: 260 LPGKLVFPSMHQAGHFSML------------------------------GLGDVVMPGLL 289

Query: 214 LCFVLRYDAYKKSQLLHLG-ETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
           LCFVLRYDAYKK+QLL  G ETG+P PRH++RISYFHCSLIGYFLGLLTATVSSE+FKAA
Sbjct: 290 LCFVLRYDAYKKTQLLPGGCETGVPPPRHINRISYFHCSLIGYFLGLLTATVSSEVFKAA 349

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI   PSKHM++
Sbjct: 350 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFISQQPSKHMEV 393

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407569|ref|XP_003488128.1| PREDICTED: signal peptide peptidase-like 3-like isoform 1 [Bombus impatiens] gi|350407572|ref|XP_003488129.1| PREDICTED: signal peptide peptidase-like 3-like isoform 2 [Bombus impatiens]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/284 (78%), Positives = 239/284 (84%), Gaps = 31/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFGVCGRFT AEL SFSLS+ IVCIWVLTGHWLLMDAMGMGLCVAFIAF+RLPSLKV
Sbjct: 140 NKISFGVCGRFTGAELLSFSLSVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFIRLPSLKV 199

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           ST+LLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPA+NPV LVA+R H+GGVAR+APKL 
Sbjct: 200 STILLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPADNPVNLVARRLHLGGVAREAPKLP 259

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPS+HQ GHFSML                              GLGD+VMPGLL
Sbjct: 260 LPGKLVFPSMHQAGHFSML------------------------------GLGDVVMPGLL 289

Query: 214 LCFVLRYDAYKKSQLLHLG-ETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
           LCFVLRYDAYKK+QLL  G ETG+P PRH++RISYFHCSLIGYFLGLLTATVSSE+FKAA
Sbjct: 290 LCFVLRYDAYKKTQLLPGGCETGLPPPRHINRISYFHCSLIGYFLGLLTATVSSEVFKAA 349

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI   PSKHM++
Sbjct: 350 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFISQQPSKHMEV 393

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013387|ref|XP_002427389.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511763|gb|EEB14651.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/283 (76%), Positives = 238/283 (84%), Gaps = 30/283 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFG+CGRFT AEL SFSL++FIVCIW+LTGHW+LMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 120 NKISFGICGRFTGAELLSFSLAVFIVCIWILTGHWILMDAMGMGLCVAFIAFVRLPSLKV 179

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           STLLLTGLLIYDVFWVFFSSYIF+ NVMVKVATRPAENPVG+VA+R H+GGV +DAPKLS
Sbjct: 180 STLLLTGLLIYDVFWVFFSSYIFNANVMVKVATRPAENPVGMVARRLHLGGVVKDAPKLS 239

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPS++  GHFSML                              GLGDIVMPGLL
Sbjct: 240 LPGKLVFPSMNHAGHFSML------------------------------GLGDIVMPGLL 269

Query: 214 LCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQ 273
           LCFVLRYDAYKKSQL HLGE G+P P+HLS I+YFHCSL+GYFLGL+TATVSSE+FKAAQ
Sbjct: 270 LCFVLRYDAYKKSQLNHLGELGVPPPKHLSNITYFHCSLLGYFLGLVTATVSSEVFKAAQ 329

Query: 274 PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI  PP+K ++I
Sbjct: 330 PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFISHPPNKQLEI 372

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855912|ref|XP_003703454.1| PREDICTED: signal peptide peptidase-like 3-like [Megachile rotundata]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/284 (77%), Positives = 237/284 (83%), Gaps = 31/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFGVCGRFT AEL SFSLS+ IVCIWVLTGHWLL+DAMGMGLCVAFIAF+RLPSLKV
Sbjct: 140 NKISFGVCGRFTGAELLSFSLSVSIVCIWVLTGHWLLVDAMGMGLCVAFIAFIRLPSLKV 199

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           ST+LLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPA+NPV LVA+R H+GGVAR+APKL 
Sbjct: 200 STILLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPADNPVNLVARRLHLGGVAREAPKLP 259

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LP KLVFPS+HQ GHFSML                              GLGD+VMPGLL
Sbjct: 260 LPAKLVFPSMHQAGHFSML------------------------------GLGDVVMPGLL 289

Query: 214 LCFVLRYDAYKKSQLLHLG-ETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
           LCFVLRYDAYKK+QLL  G ETG+P PRH++RISYFHCSLIGYFLGLLTA VSSE+FKAA
Sbjct: 290 LCFVLRYDAYKKTQLLPGGCETGVPPPRHINRISYFHCSLIGYFLGLLTAAVSSEVFKAA 349

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI   PSKHM++
Sbjct: 350 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFISQQPSKHMEV 393

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549607|ref|XP_001603590.1| PREDICTED: signal peptide peptidase-like 3-like isoform 1 [Nasonia vitripennis] gi|345487961|ref|XP_003425799.1| PREDICTED: signal peptide peptidase-like 3-like isoform 2 [Nasonia vitripennis] gi|345487963|ref|XP_003425800.1| PREDICTED: signal peptide peptidase-like 3-like isoform 3 [Nasonia vitripennis]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/284 (78%), Positives = 239/284 (84%), Gaps = 30/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFGVCGRFT AEL SFSLS+ IVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 141 NKISFGVCGRFTGAELLSFSLSVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 200

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGG-VARDAPKL 152
           STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPA+NPVGLVA+R H+GG VAR+APKL
Sbjct: 201 STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPADNPVGLVARRLHLGGSVAREAPKL 260

Query: 153 SLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGL 212
           SLPGKLVFPS+H+ GHFSML GLGD+VMPGLLLCFVLRYDAYKKSQ L  G         
Sbjct: 261 SLPGKLVFPSMHRAGHFSML-GLGDVVMPGLLLCFVLRYDAYKKSQPLPGGC-------- 311

Query: 213 LLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
                               E G+P PRHL+RI+YFHCSLIGYFLGLLTATVSSE+FKAA
Sbjct: 312 --------------------EAGVPPPRHLNRITYFHCSLIGYFLGLLTATVSSEVFKAA 351

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI+   SKH+++
Sbjct: 352 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIVQQQSKHLEV 395

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792693|gb|JAA61798.1| Putative conserved membrane protein, partial [Rhipicephalus pulchellus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/283 (76%), Positives = 237/283 (83%), Gaps = 31/283 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
           ++ISFG CGRFT+AEL SFSLS+ IVC+WVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 172 KKISFGTCGRFTAAELVSFSLSVAIVCVWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 231

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           STLLLTGLLIYDVFWVFFSSYIF+ NVMVKVATRPA+NPVGLVAK+ H+G + R+APKLS
Sbjct: 232 STLLLTGLLIYDVFWVFFSSYIFNANVMVKVATRPADNPVGLVAKKLHLGSMVREAPKLS 291

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPS+H +GHFSML                              GLGDIVMPGLL
Sbjct: 292 LPGKLVFPSVHSSGHFSML------------------------------GLGDIVMPGLL 321

Query: 214 LCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQ 273
           LCFVLRYDAYKK+QL    ETG+P P HL++ISYFHCSLIGYFLGLLTATVSSE+FKAAQ
Sbjct: 322 LCFVLRYDAYKKAQLSS-AETGLPPPNHLNKISYFHCSLIGYFLGLLTATVSSEVFKAAQ 380

Query: 274 PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFI  PPSKH+D+
Sbjct: 381 PALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFISSPPSKHLDV 423

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051556|ref|XP_001861816.1| signal peptide peptidase [Culex quinquefasciatus] gi|167872753|gb|EDS36136.1| signal peptide peptidase [Culex quinquefasciatus]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/284 (75%), Positives = 236/284 (83%), Gaps = 31/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            RISFGVCGRFT+AELFSFSL++ IVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 160 NRISFGVCGRFTAAELFSFSLAVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 219

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
           STLLLTGLLIYDVFWVFFSSYIF+TNVMVKVATRPA+NPVG+VA++ ++GG+ R+ PKL+
Sbjct: 220 STLLLTGLLIYDVFWVFFSSYIFNTNVMVKVATRPADNPVGIVARKLNLGGIVREPPKLN 279

Query: 154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLL 213
           LPGKLVFPSLH +GHFSML                              GLGDIVMPGLL
Sbjct: 280 LPGKLVFPSLHNSGHFSML------------------------------GLGDIVMPGLL 309

Query: 214 LCFVLRYDAYKKSQLLHLGETGIPAPRHL-SRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
           LCFVLRYDAYKKSQ     ETG+P PR + SR++YFHCSL+GYFLGLLTATVSSE+FKAA
Sbjct: 310 LCFVLRYDAYKKSQCTQTAETGVPPPRGVGSRLTYFHCSLLGYFLGLLTATVSSEVFKAA 369

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFII   SK +++
Sbjct: 370 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIQQASKQLEV 413

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321474528|gb|EFX85493.1| hypothetical protein DAPPUDRAFT_314171 [Daphnia pulex]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 230/284 (80%), Gaps = 31/284 (10%)

Query: 34  RRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
            +ISFG+CGRFT AEL SFS++L IVC+W+LTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct: 143 NKISFGICGRFTGAELLSFSMALTIVCVWILTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 202

Query: 94  STLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKL 152
           STLLLTGLL+YDVFWVFFSSYIF+ NVMVKVATRPA+NPVG++AK+FH   G+ARDAPKL
Sbjct: 203 STLLLTGLLVYDVFWVFFSSYIFNANVMVKVATRPADNPVGVMAKKFHFASGMARDAPKL 262

Query: 153 SLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGL 212
           SLPGKLVFPS+H  GHFSML                              GLGDIVMPGL
Sbjct: 263 SLPGKLVFPSMHNVGHFSML------------------------------GLGDIVMPGL 292

Query: 213 LLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA 272
           LLCFVLRYDAYKKSQLLH  ETG+P P H +RI+YFHCSLIGYFLGLLTATVSSE FKAA
Sbjct: 293 LLCFVLRYDAYKKSQLLHSAETGVPPPNHFNRITYFHCSLIGYFLGLLTATVSSEFFKAA 352

Query: 273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSKHMDI 316
           QPALLYLVPFTLLPLL MAYLKGDLRRMW EPFI  P  K + +
Sbjct: 353 QPALLYLVPFTLLPLLVMAYLKGDLRRMWDEPFIAPPQPKQLHV 396

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
FB|FBgn0039381	422	SppL "Signal peptide peptidase	0.518	0.388	0.781	4.4e-68
ZFIN|ZDB-GENE-050913-71	382	sppl3 "signal peptide peptidas	0.503	0.416	0.689	6.8e-56
RGD|1562826	384	Sppl3 "signal peptide peptidas	0.503	0.414	0.689	6.8e-56
UNIPROTKB|E1C173	384	LOC416968 "Uncharacterized pro	0.503	0.414	0.689	6.8e-56
UNIPROTKB|Q8TCT6	385	SPPL3 "Signal peptide peptidas	0.503	0.412	0.689	6.8e-56
MGI|MGI:1891433	384	Sppl3 "signal peptide peptidas	0.503	0.414	0.689	6.8e-56
UNIPROTKB|F1N419	384	SPPL3 "Uncharacterized protein	0.503	0.414	0.689	6.8e-56
UNIPROTKB|G3MWR0	385	SPPL3 "Uncharacterized protein	0.503	0.412	0.689	6.8e-56
UNIPROTKB|J9P8J7	384	SPPL3 "Uncharacterized protein	0.503	0.414	0.689	6.8e-56
UNIPROTKB|F1RJH0	416	SPPL3 "Uncharacterized protein	0.503	0.382	0.689	6.8e-56

FB|FBgn0039381 SppL "Signal peptide peptidase-like" [Drosophila melanogaster (taxid:7227)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 129/165 (78%), Positives = 140/165 (84%)

Query:    34 RRISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 93
             +R SFG CGRFT+AE         IVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV
Sbjct:   170 KRFSFGFCGRFTAAELFSFTLSVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKV 229

Query:    94 SXXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLS 153
             S        IYDVFWVF SSYIFSTNVMVKVATRPA+NPVG+VA++ H+GG+ RD PKL+
Sbjct:   230 STLLLTGLLIYDVFWVFLSSYIFSTNVMVKVATRPADNPVGIVARKLHLGGIVRDTPKLN 289

Query:   154 LPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQ 198
             LPGKLVFPSLH TGHFSML GLGD+VMPGLLLCFVLRYDAYKK+Q
Sbjct:   290 LPGKLVFPSLHNTGHFSML-GLGDVVMPGLLLCFVLRYDAYKKAQ 333

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IDA

GO:0006465 "signal peptide processing" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-050913-71 sppl3 "signal peptide peptidase 3" [Danio rerio (taxid:7955)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   131 KISFGCCGRFTLAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 190

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G G+ RD P+LS
Sbjct:   191 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPGMGRDVPRLS 250

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   251 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 291

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISS

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISS

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISS

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

RGD|1562826 Sppl3 "signal peptide peptidase like 3" [Rattus norvegicus (taxid:10116)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   130 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   250 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 290

GO:0005791 "rough endoplasmic reticulum" evidence=IEA;ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA;ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO

UNIPROTKB|E1C173 LOC416968 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   130 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   250 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 290

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|Q8TCT6 SPPL3 "Signal peptide peptidase-like 3" [Homo sapiens (taxid:9606)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   131 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 190

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   191 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 250

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   251 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 291

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IMP

GO:0030660 "Golgi-associated vesicle membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IDA

MGI|MGI:1891433 Sppl3 "signal peptide peptidase 3" [Mus musculus (taxid:10090)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   130 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   250 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 290

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008233 "peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

UNIPROTKB|F1N419 SPPL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   130 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   250 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|G3MWR0 SPPL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   131 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 190

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   191 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 250

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   251 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 291

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

UNIPROTKB|J9P8J7 SPPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   130 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   250 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1RJH0 SPPL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 113/164 (68%), Positives = 131/164 (79%)

Query:    35 RISFGVCGRFTSAEXXXXXXXXXIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVS 94
             +ISFG CGRFT+AE         +V IWVLTGHWLLMDA+ MGLCVA IAFVRLPSLKVS
Sbjct:   162 KISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 221

Query:    95 XXXXXXXXIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMG-GVARDAPKLS 153
                     IYDVFWVFFS+YIF++NVMVKVAT+PA+NP+ +++++ H+G  V RD P+LS
Sbjct:   222 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 281

Query:   154 LPGKLVFPSLHQTG-HFSMLRGLGDIVMPGLLLCFVLRYDAYKK 196
             LPGKLVFPS   TG HFSML G+GDIVMPGLLLCFVLRYD YKK
Sbjct:   282 LPGKLVFPS--STGSHFSML-GIGDIVMPGLLLCFVLRYDNYKK 322

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CUS9	SPPL3_MOUSE	3, ., 4, ., 2, 3, ., -	0.6654	0.7531	0.6197	yes	N/A
Q8TCT6	SPPL3_HUMAN	3, ., 4, ., 2, 3, ., -	0.6654	0.7531	0.6181	yes	N/A
Q93Z32	SIPL1_ARATH	3, ., 4, ., 2, 3, ., -	0.3643	0.7310	0.6209	yes	N/A
Q7G7C7	SIPL1_ORYSJ	3, ., 4, ., 2, 3, ., -	0.3690	0.7721	0.6576	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	316
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	1e-72
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	4e-42

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  225 bits (576), Expect = 1e-72
 Identities = 107/268 (39%), Positives = 136/268 (50%), Gaps = 71/268 (26%)

Query: 41  CGRFTSAELFSFSLSLFIVCIW-VLTG-HWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLL 98
            GRFT +EL +  L +     W VL   HW+L D +G+ LC+  I  +RLP+LKV T+LL
Sbjct: 89  NGRFTYSELVALLLCIVFAVWWYVLRKEHWILQDILGIALCINVIKILRLPNLKVGTILL 148

Query: 99  TGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKL 158
           +GL  YD+FWVF S YIF T+VMV VAT P +                       LP KL
Sbjct: 149 SGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAEK-------------------LPMKL 189

Query: 159 VFPSLHQT----GHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLL 214
           VFP L+      G FSML GLGDIVMPGLL+ F LR+D  K                   
Sbjct: 190 VFPRLNDYPGNWGPFSML-GLGDIVMPGLLIAFCLRFDISKN------------------ 230

Query: 215 CFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQP 274
                                       S  +YF  ++I Y LGLL   V+  +FKAAQP
Sbjct: 231 ---------------------------KSSRTYFISTMIAYGLGLLITFVALNLFKAAQP 263

Query: 275 ALLYLVPFTLLPLLTMAYLKGDLRRMWS 302
           ALLYLVP TL  LL +A  +G+L+++W+
Sbjct: 264 ALLYLVPCTLGTLLLVALWRGELKKLWN 291

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  145 bits (369), Expect = 4e-42
 Identities = 75/265 (28%), Positives = 105/265 (39%), Gaps = 64/265 (24%)

Query: 32  LFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTG--HWLLMDAMGMGLCVAFIAFVRLP 89
           L+  +      R     L    L+  +V  W +     W+  D +G+ LC+A +  +RLP
Sbjct: 47  LYSLLYPLEVFRVDYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLP 106

Query: 90  SLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDA 149
           S   + +LL  L IYD+F VF +       VMV+VAT                    RD 
Sbjct: 107 SEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEVATG-------------------RDE 145

Query: 150 PKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVM 209
           P    P  L  P L       ++    D      +L                 GLGDIV 
Sbjct: 146 PIKVFPALLYVPRL-------VVSFEDDEEERFSML-----------------GLGDIVF 181

Query: 210 PGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIF 269
           PG+L+    R+D   +S                   +YF    + Y +GL+   V   +F
Sbjct: 182 PGILVASAARFDVSVRSDS-----------------NYFLACFVAYGIGLILTLVLLALF 224

Query: 270 KAAQPALLYLVPFTLLPLLTMAYLK 294
           K AQPAL YLVPFTL+  L  A L+
Sbjct: 225 KKAQPALPYLVPFTLVFYLLTALLR 249

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG2443|consensus	362		100.0
KOG2442|consensus	541		100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	99.62
COG3389	277	Uncharacterized protein conserved in archaea [Func	99.44
KOG2443|consensus	362		96.62
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	94.78
KOG2736|consensus	406		93.72
KOG2442|consensus	541		91.93
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	90.09
PF01080	403	Presenilin: Presenilin Alzheimer disease; InterPro	89.45
COG3389	277	Uncharacterized protein conserved in archaea [Func	83.05

>KOG2443|consensus

Probab=100.00  E-value=2.3e-59  Score=446.38  Aligned_cols=213  Identities=52%  Similarity=0.829  Sum_probs=191.4

Q ss_pred             ccccccccccccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Q psy13063         26 SVYNTTLFRRISFGVCGRFTSAELFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYD  105 (316)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~w~~~~~W~l~Nilgi~~~i~~i~~i~l~s~k~~tiLL~gLf~YD  105 (316)
                      -+|.+...+|..+++|+++|..|++++..|..++++|++++||++||++|+++|+++|+.+|++|+|+|++||.|||+||
T Consensus       132 ~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~~i~v~~ll~~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYD  211 (362)
T KOG2443|consen  132 LLFPRGPGEKKEFICNGKFTRAQIVALVLSSMIVVWYLLTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYD  211 (362)
T ss_pred             eeeeccCCcccceeecccccHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHh
Confidence            34555666667789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhheeecccccccceeEEeecCCCCCCccchhhcccCCCcccCCCCCCCCceeeccCCCC-----CCcccccccCCCccc
Q psy13063        106 VFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQ-----TGHFSMLRGLGDIVM  180 (316)
Q Consensus       106 IF~VF~sp~~f~tsVMvtVAt~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~~~-----~~~~SmL~glGDiv~  180 (316)
                      |||||+      |||||||||+                        +|.|+|++||+...     ..+||||        
T Consensus       212 IfwVFg------TnVMVtVAt~------------------------~D~PikL~fP~~l~~~~~~as~fsML--------  253 (362)
T KOG2443|consen  212 IFWVFG------TNVMVTVATS------------------------LDAPIKLVFPQKLLFPGLTASNFSML--------  253 (362)
T ss_pred             eEEEec------CceEEEeecc------------------------cCCceEEecchhhccCCCccccceec--------
Confidence            999995      8999999996                        57888888887532     2358998        


Q ss_pred             ccceeeeeehhhhhhhhhhhhcCCCCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q psy13063        181 PGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLL  260 (316)
Q Consensus       181 Pg~l~~~~lr~d~~~~~~~~~lGlGDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~  260 (316)
                                            ||||||+||+|+|+++|||.+|+++.              .+.+||.++++||.+||.
T Consensus       254 ----------------------GLGDIviPGiflAl~lRfD~~k~~~s--------------~~~~YF~~t~i~Y~~gL~  297 (362)
T KOG2443|consen  254 ----------------------GLGDIVIPGIFLALVLRFDIRKKRNS--------------KVRTYFHNTFIAYFLGLL  297 (362)
T ss_pred             ----------------------cccchhhHHHHHHHHHHhhHHHHhcc--------------cCceEEEEeHHHHHhhhH
Confidence                                  99999999999999999999887752              123899999999999999


Q ss_pred             HHHHHHHHhCcCccchhhhhhhhhHHHHHHHHHHhHHHHhccCcccCCCCCC
Q psy13063        261 TATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIVPPSK  312 (316)
Q Consensus       261 ~t~~a~~~~~~gQPALLYLVP~~L~~~~~~A~~RgEl~~~W~g~~~~~~~~~  312 (316)
                      .|+++|+++|++|||||||||+|+++.+++|++|||++.+|++++.-.++++
T Consensus       298 ~ti~~~~~FkaAQPALLYlVP~~l~~~ll~A~~~gdlk~l~s~~~~~~~~~~  349 (362)
T KOG2443|consen  298 TTIVVLHIFKAAQPALLYLVPACLGPLLLMAYWRGDLKVLWSFDESTKEESA  349 (362)
T ss_pred             HHhhhhhhhhccchhhhhhhHHHHhHHHHHHHHccchHhhhCccccCCCCcH
Confidence            9999999999999999999999999999999999999999999996665554

>KOG2442|consensus

Probab=100.00  E-value=2.3e-58  Score=454.45  Aligned_cols=219  Identities=37%  Similarity=0.698  Sum_probs=194.9

Q ss_pred             cccccc--ccccccccccccccc---------chhHHHHHHHHHHHHHHHhhh----hhHHHhHHHHHHHHHHHHhcccC
Q psy13063         25 VSVYNT--TLFRRISFGVCGRFT---------SAELFSFSLSLFIVCIWVLTG----HWLLMDAMGMGLCVAFIAFVRLP   89 (316)
Q Consensus        25 ~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~w~~~~----~W~l~Nilgi~~~i~~i~~i~l~   89 (316)
                      .++|||  ++++|.++|.|...+         ...++.-.+|++++++|.+.|    +|++||++|||+|+++++.+|+|
T Consensus       281 ~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~v~R~e~~AwilqDvLGIalci~vLk~vRLP  360 (541)
T KOG2442|consen  281 QGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWAVFRNEDWAWILQDVLGIALCITVLKTVRLP  360 (541)
T ss_pred             chHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhheeEEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCC
Confidence            579997  999999999885322         344455567888999998865    79999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhhhheeecccccc--cceeEEeecCCCCCCccchhhcccCCCcccCCCCCCCCceeeccCCC---
Q psy13063         90 SLKVSTLLLTGLLIYDVFWVFFSSYIFS--TNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLH---  164 (316)
Q Consensus        90 s~k~~tiLL~gLf~YDIF~VF~sp~~f~--tsVMvtVAt~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~~---  164 (316)
                      |+|++++||..+|+|||||||+||++|+  +|||++||+|+++++                   +++||.+.+||+.   
T Consensus       361 nlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~-------------------EkiPMlLkVPrl~~s~  421 (541)
T KOG2442|consen  361 NLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTE-------------------EKIPMLLKVPRLFFSV  421 (541)
T ss_pred             chhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCC-------------------CCcceEEEcchhcccc
Confidence            9999999999999999999999999998  899999999976552                   5679999999976   


Q ss_pred             --C-CCcccccccCCCcccccceeeeeehhhhhhhhhhhhcCCCCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCC
Q psy13063        165 --Q-TGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRH  241 (316)
Q Consensus       165 --~-~~~~SmL~glGDiv~Pg~l~~~~lr~d~~~~~~~~~lGlGDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~  241 (316)
                        + .++||||                              |+|||++||++++||+|||.+.++.              
T Consensus       422 ~~~~~~~~sil------------------------------GFGDIl~PGlLVa~c~RfD~~~~~~--------------  457 (541)
T KOG2442|consen  422 LSDPWGGYSIL------------------------------GFGDILVPGLLVAFCLRFDVQVNSV--------------  457 (541)
T ss_pred             ccccCCCeeEe------------------------------eecccccchHHHHHHHHhhhhcccc--------------
Confidence              3 3567877                              9999999999999999999886652              


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhCcCccchhhhhhhhhHHHHHHHHHHhHHHHhccCcccCC
Q psy13063        242 LSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFIIV  308 (316)
Q Consensus       242 ~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPALLYLVP~~L~~~~~~A~~RgEl~~~W~g~~~~~  308 (316)
                        |..||.++++||++||++|++++.+||.|||||||||||||++...+|++|||++++|+|.-...
T Consensus       458 --~~iYfv~~tvaYgiGLlvTfvaL~LM~~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~  522 (541)
T KOG2442|consen  458 --SNIYFVWSTVAYGIGLLVTFVALVLMKGGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQK  522 (541)
T ss_pred             --ceeEEehhHHHHHHHHHHHHHHHHHhcCCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCccc
Confidence              34899999999999999999999999999999999999999999999999999999999998654

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.6e-58  Score=439.93  Aligned_cols=198  Identities=49%  Similarity=0.936  Sum_probs=1.0

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHhhh--hhHHHhHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhhhheeecccccc
Q psy13063         40 VCGRFTSAELFSFSLSLFIVCIWVLTG--HWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFS  117 (316)
Q Consensus        40 ~~~~~~~~~~~~~~~s~~~~~~w~~~~--~W~l~Nilgi~~~i~~i~~i~l~s~k~~tiLL~gLf~YDIF~VF~sp~~f~  117 (316)
                      ...+++..++++..+|+++++.|++.+  ||++||++|+|+|+.+++.+|+||+|+++++|+++|+|||||||+||++||
T Consensus        94 ~~~~~~~~~l~~~~~s~~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~s~~~~g  173 (298)
T PF04258_consen   94 FSGSFTLSDLLSFLISLAIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATILLIGLFLYDIFWVFISPYFFG  173 (298)
T ss_dssp             ---------------------S----------------------------------------------------------
T ss_pred             eeeeeeHHHHHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            345788899999999999999988754  799999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEeecCCCCCCccchhhcccCCCcccCCCCCCCCceeeccCCC-----CCCcccccccCCCcccccceeeeeehhh
Q psy13063        118 TNVMVKVATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLH-----QTGHFSMLRGLGDIVMPGLLLCFVLRYD  192 (316)
Q Consensus       118 tsVMvtVAt~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~~-----~~~~~SmL~glGDiv~Pg~l~~~~lr~d  192 (316)
                      +|||++|||++.+++                   .++|+|+++|+..     ..+++|||                    
T Consensus       174 ~svM~~VA~~~~~~~-------------------~~~P~~l~~P~~~~~~~~~~~~~s~L--------------------  214 (298)
T PF04258_consen  174 TSVMVTVATGGFDAP-------------------EKLPIKLQFPRFFDSNSSCPKPFSML--------------------  214 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cchhhhhhccccccc-------------------cCCCeEEEEeccccccccCCCCeeEe--------------------
Confidence            999999999855442                   3579999999974     35678888                    


Q ss_pred             hhhhhhhhhcCCCCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcC
Q psy13063        193 AYKKSQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAA  272 (316)
Q Consensus       193 ~~~~~~~~~lGlGDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~g  272 (316)
                                |+|||++||+++++|+|||..+++.                +++||.++++||++||++|+++++++|+|
T Consensus       215 ----------GlGDIviPGl~i~~~~rfD~~~~~~----------------~~~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~  268 (298)
T PF04258_consen  215 ----------GLGDIVIPGLFIAFCLRFDKSRNKS----------------RKPYFIASLIGYALGLLLTFVALHLFKHG  268 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------ccchHHHHHHHHHHHHHhhHhhccc----------------cchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                      9999999999999999999887321                23799999999999999999999999999


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHhHHHHhcc
Q psy13063        273 QPALLYLVPFTLLPLLTMAYLKGDLRRMWS  302 (316)
Q Consensus       273 QPALLYLVP~~L~~~~~~A~~RgEl~~~W~  302 (316)
                      |||||||||+|+++++++|++|||++++||
T Consensus       269 QPALlylvP~~l~~~~~~a~~r~el~~~w~  298 (298)
T PF04258_consen  269 QPALLYLVPCTLGSVLLVAWIRGELKDFWN  298 (298)
T ss_dssp             ------------------------------
T ss_pred             CCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence            999999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=1.1e-42  Score=324.24  Aligned_cols=180  Identities=41%  Similarity=0.694  Sum_probs=156.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhh--hhHHHhHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhhhheeecccccccceeEEe
Q psy13063         47 AELFSFSLSLFIVCIWVLTG--HWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKV  124 (316)
Q Consensus        47 ~~~~~~~~s~~~~~~w~~~~--~W~l~Nilgi~~~i~~i~~i~l~s~k~~tiLL~gLf~YDIF~VF~sp~~f~tsVMvtV  124 (316)
                      ........+++++..|.+++  +|++||++|+++|++.++.+++||+|+++++|+++++||+||||.||.  +.+|||+|
T Consensus        62 ~~~~~~~~~~~v~~~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~v  139 (249)
T smart00730       62 PTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEV  139 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhH
Confidence            44566667788888888664  999999999999999999999999999999999999999999999987  88999999


Q ss_pred             ecCCCCCCccchhhcccCCCcccCCCCCCCCceeeccCC------CCCCcccccccCCCcccccceeeeeehhhhhhhhh
Q psy13063        125 ATRPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSL------HQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQ  198 (316)
Q Consensus       125 At~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~------~~~~~~SmL~glGDiv~Pg~l~~~~lr~d~~~~~~  198 (316)
                      |++..++                   .+..|+++..|+.      .+.+++|+|                          
T Consensus       140 A~~~~~~-------------------~~~~P~ll~~p~~~~~~~~~~~~~~~~L--------------------------  174 (249)
T smart00730      140 ATGRDEP-------------------IKVFPALLYVPRLVVSFEDDEEGRFSML--------------------------  174 (249)
T ss_pred             hccCCCC-------------------cccCChhhcccccccccccCCCCcccee--------------------------
Confidence            9974321                   1457888888873      223456666                          


Q ss_pred             hhhcCCCCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccchhh
Q psy13063        199 LLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLY  278 (316)
Q Consensus       199 ~~~lGlGDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPALLY  278 (316)
                          |+||||+||+++++|+|||..++.                 +..||.++++||++||+.|+++++++|+|||||+|
T Consensus       175 ----GLGDiv~Pgilv~~a~~fd~~~~~-----------------~~~yf~~~~~ay~~GL~~t~~~l~~~~~aqPALly  233 (249)
T smart00730      175 ----GLGDIVFPGILVASAARFDVSVRS-----------------DSNYFLACFVAYGIGLILTLVLLALFKKAQPALPY  233 (249)
T ss_pred             ----cCCCeeeHHHHHHHHHHhhhcccC-----------------CcccHHHHHHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence                999999999999999999976432                 23799999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHH
Q psy13063        279 LVPFTLLPLLTMAYLK  294 (316)
Q Consensus       279 LVP~~L~~~~~~A~~R  294 (316)
                      +||+++++.+++|+.|
T Consensus       234 lvp~~l~~~~~~~~~r  249 (249)
T smart00730      234 LVPFTLVFYLLTALLR  249 (249)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999976

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=99.62  E-value=1.2e-15  Score=144.01  Aligned_cols=185  Identities=22%  Similarity=0.327  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHhcccC-chHHHHHHHHHHHHHhhhheeecccccccceeEEeecC
Q psy13063         49 LFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLP-SLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATR  127 (316)
Q Consensus        49 ~~~~~~s~~~~~~w~~~~~W~l~Nilgi~~~i~~i~~i~l~-s~k~~tiLL~gLf~YDIF~VF~sp~~f~tsVMvtVAt~  127 (316)
                      ..++..+++++...+.+++|+..|+.|+.++.+.-..+.+. +...+.+||+.|-+||..-||      +|++|++.|++
T Consensus        93 ~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl~~lpaiiLL~iLAVYDaISVY------kTkHMltLAeg  166 (283)
T PF06550_consen   93 IIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISLGILPAIILLAILAVYDAISVY------KTKHMLTLAEG  166 (283)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhccHHHHHHHHHHHHHhhhhhee------cchHHHHHHHH
Confidence            44566777777777788999999999999999877766665 667799999999999999999      67899999997


Q ss_pred             CCCCCccchhhcccCCCcccCCCCCCCCceeeccCCCCCCcccccccCCCcccccceeeeeehhhhh---hhhhhhhcCC
Q psy13063        128 PAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAY---KKSQLLHLGL  204 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~~~~~~~SmL~glGDiv~Pg~l~~~~lr~d~~---~~~~~~~lGl  204 (316)
                      ..                     .+++|+.++.|+.   ++||.+ +.|              .+..   ++|+...+|+
T Consensus       167 v~---------------------d~klPilfViP~~---~~ySf~-~~~--------------~~~~~~~~~r~a~fiGl  207 (283)
T PF06550_consen  167 VM---------------------DLKLPILFVIPKK---RGYSFL-KDG--------------FDNREEKEERDAFFIGL  207 (283)
T ss_pred             Hh---------------------ccCCceEEEEecc---cCcccc-ccc--------------cccccccccccceEecc
Confidence            43                     2578999999983   568887 222              1222   2367789999


Q ss_pred             CCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhH-HHHHHHHHHHHHHHHHHHHHhCcCccchhhhhhhh
Q psy13063        205 GDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYF-HCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFT  283 (316)
Q Consensus       205 GDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF-~~sligY~~GL~~t~~a~~~~~~gQPALLYLVP~~  283 (316)
                      ||.++|.++++....|.....-                .-..++ ..+++|=.+|+.+=+.. ...+++||+|-||.-+.
T Consensus       208 GD~vmPtILVvSa~~f~~~~~~----------------~~~~lpalga~~Gtl~gl~vL~~~-v~kgrp~aGLP~LN~Ga  270 (283)
T PF06550_consen  208 GDAVMPTILVVSAAFFLSAPIL----------------GGLNLPALGAMLGTLAGLAVLLRF-VMKGRPQAGLPFLNGGA  270 (283)
T ss_pred             chhhhHHHHHHHHHHhccccch----------------hhhhHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCCccchhH
Confidence            9999999999988888643110                000121 33355555554332221 23589999999999999


Q ss_pred             hHHHHHHHHHHh
Q psy13063        284 LLPLLTMAYLKG  295 (316)
Q Consensus       284 L~~~~~~A~~Rg  295 (316)
                      ++..++-++..|
T Consensus       271 I~Gflig~l~sg  282 (283)
T PF06550_consen  271 IAGFLIGALASG  282 (283)
T ss_pred             HHHHHHHHHHcC
Confidence            888877766543

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.44  E-value=1.5e-13  Score=126.62  Aligned_cols=162  Identities=24%  Similarity=0.337  Sum_probs=127.3

Q ss_pred             hhhhhHHHhHHHHHHHHHHHHhcccC-chHHHHHHHHHHHHHhhhheeecccccccceeEEeecCCCCCCccchhhcccC
Q psy13063         64 LTGHWLLMDAMGMGLCVAFIAFVRLP-SLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVATRPAENPVGLVAKRFHM  142 (316)
Q Consensus        64 ~~~~W~l~Nilgi~~~i~~i~~i~l~-s~k~~tiLL~gLf~YDIF~VF~sp~~f~tsVMvtVAt~~~~~~~~~~~~~~~~  142 (316)
                      .++.|+..|..|.+++.+.-..+.++ ....+..+|..+-+||..-|+      ||++|++.|++..             
T Consensus       108 ~~peWyVid~ag~~la~Giaai~GIsfgv~pavvlL~~lavYDaIsVY------kT~HMIslA~~v~-------------  168 (277)
T COG3389         108 KYPEWYVIDLAGFFLAVGIAAIFGISFGVLPAVVLLIALAVYDAISVY------KTRHMISLAEGVM-------------  168 (277)
T ss_pred             hccceEEeehHHHHHHhhHHHhheeecchHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHH-------------
Confidence            35699999999999999987777666 666789999999999999998      6889999999732             


Q ss_pred             CCcccCCCCCCCCceeeccCCCCCCcccccccCCCcccccceeeeeehhhhhhhhhhhhcCCCCccccceeeeeeehhhh
Q psy13063        143 GGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMPGLLLCFVLRYDA  222 (316)
Q Consensus       143 ~~~~~~~~~l~~Pikl~~P~~~~~~~~SmL~glGDiv~Pg~l~~~~lr~d~~~~~~~~~lGlGDIviPGl~ia~~~rfD~  222 (316)
                              .+|+||.+++|.   +..||+. +              ..||+.++++..+.|+||+++|.+++..+.-|-.
T Consensus       169 --------d~~lPmlfviP~---~l~ysf~-~--------------~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~  222 (277)
T COG3389         169 --------DLDLPMLFVIPE---NLAYSFV-E--------------DAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLI  222 (277)
T ss_pred             --------hcCCceEEEeec---cccccee-e--------------hhhhcCCCCceEEEeechhhcccceeeehHHhcc
Confidence                    368999999997   3568887 3              3577778999999999999999999998877743


Q ss_pred             hhhhhcccCCCCCCCCCCCcccchhH--HHHHHHHHHHHHHHHHHHHHhCcCccchhhhhhhhhHHHHHHHH
Q psy13063        223 YKKSQLLHLGETGIPAPRHLSRISYF--HCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTLLPLLTMAY  292 (316)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~r~~YF--~~sligY~~GL~~t~~a~~~~~~gQPALLYLVP~~L~~~~~~A~  292 (316)
                      ..                    ..+|  ..++.|=.+|+++-  -+..-+++||-|-|+.-+++.+.++-+.
T Consensus       223 s~--------------------~l~f~~Lpal~GglvGl~vL--~~v~r~Rp~pGLP~lN~GaIaGflig~V  272 (277)
T COG3389         223 SP--------------------ILAFIVLPALAGGLVGLAVL--YFVNRGRPHPGLPFLNTGAIAGFLIGFV  272 (277)
T ss_pred             CC--------------------chhhhhHHHHhccHHHHHHH--HHHhcCCCCCCCceeccchHHHHHHHHH
Confidence            21                    1233  23577777777543  3345689999999999888877665443

>KOG2443|consensus

Probab=96.62  E-value=0.0003  Score=68.88  Aligned_cols=22  Identities=55%  Similarity=1.004  Sum_probs=21.2

Q ss_pred             Ccccccceeeeeehhhhhhhhh
Q psy13063        177 DIVMPGLLLCFVLRYDAYKKSQ  198 (316)
Q Consensus       177 Div~Pg~l~~~~lr~d~~~~~~  198 (316)
                      ||||||+++|+++|||.+++++
T Consensus       257 DIviPGiflAl~lRfD~~k~~~  278 (362)
T KOG2443|consen  257 DIVIPGIFLALVLRFDIRKKRN  278 (362)
T ss_pred             chhhHHHHHHHHHHhhHHHHhc
Confidence            8999999999999999999887

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.78  E-value=0.0081  Score=57.87  Aligned_cols=19  Identities=53%  Similarity=1.121  Sum_probs=0.0

Q ss_pred             Ccccccceeeeeehhhhhh
Q psy13063        177 DIVMPGLLLCFVLRYDAYK  195 (316)
Q Consensus       177 Div~Pg~l~~~~lr~d~~~  195 (316)
                      |||+||+++++|+|||.++
T Consensus       218 DIviPGl~i~~~~rfD~~~  236 (298)
T PF04258_consen  218 DIVIPGLFIAFCLRFDKSR  236 (298)
T ss_dssp             -------------------
T ss_pred             hHHHHHHHHHHHHHhhHhh
Confidence            8999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>KOG2736|consensus

Probab=93.72  E-value=0.11  Score=51.91  Aligned_cols=70  Identities=23%  Similarity=0.392  Sum_probs=54.8

Q ss_pred             hhhhhcCCCCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccch
Q psy13063        197 SQLLHLGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPAL  276 (316)
Q Consensus       197 ~~~~~lGlGDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPAL  276 (316)
                      .....||+||-|+=.++++-+.-+|.+                      .=-++|.+|-.+||.+|...+.++|++-|||
T Consensus       317 ~r~ikLGlGDFIFYSvLvGkAa~~~d~----------------------~TviAC~vaIL~GL~~TL~llsv~~kALPAL  374 (406)
T KOG2736|consen  317 ERGIKLGLGDFIFYSVLVGKAAAYGDL----------------------NTVIACFVAILIGLCLTLLLLSVFKKALPAL  374 (406)
T ss_pred             ccceeeccCceEEEEeeccchhhcCCh----------------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCC
Confidence            334567999999888888776666622                      1136889999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHH
Q psy13063        277 LYLVPFTLLPLLTM  290 (316)
Q Consensus       277 LYLVP~~L~~~~~~  290 (316)
                      -  +|.++|.+.-.
T Consensus       375 P--isI~~G~iFYF  386 (406)
T KOG2736|consen  375 P--ISITFGLIFYF  386 (406)
T ss_pred             c--hHHHHHHHHHH
Confidence            8  57777766543

>KOG2442|consensus

Probab=91.93  E-value=0.032  Score=57.28  Aligned_cols=21  Identities=52%  Similarity=0.980  Sum_probs=19.0

Q ss_pred             Ccccccceeeeeehhhhhhhh
Q psy13063        177 DIVMPGLLLCFVLRYDAYKKS  197 (316)
Q Consensus       177 Div~Pg~l~~~~lr~d~~~~~  197 (316)
                      ||++||+|+++|+|||-..++
T Consensus       436 DIl~PGlLVa~c~RfD~~~~~  456 (541)
T KOG2442|consen  436 DILVPGLLVAFCLRFDVQVNS  456 (541)
T ss_pred             ccccchHHHHHHHHhhhhccc
Confidence            899999999999999987654

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=90.09  E-value=0.048  Score=51.50  Aligned_cols=19  Identities=42%  Similarity=0.774  Sum_probs=17.7

Q ss_pred             Ccccccceeeeeehhhhhh
Q psy13063        177 DIVMPGLLLCFVLRYDAYK  195 (316)
Q Consensus       177 Div~Pg~l~~~~lr~d~~~  195 (316)
                      |||+||+++++++|||.++
T Consensus       178 Div~Pgilv~~a~~fd~~~  196 (249)
T smart00730      178 DIVFPGILVASAARFDVSV  196 (249)
T ss_pred             CeeeHHHHHHHHHHhhhcc
Confidence            8999999999999999764

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.45  E-value=0.18  Score=50.93  Aligned_cols=65  Identities=26%  Similarity=0.428  Sum_probs=43.5

Q ss_pred             hhhcCCCCccccceeeeeeehh-hhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccchh
Q psy13063        199 LLHLGLGDIVMPGLLLCFVLRY-DAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALL  277 (316)
Q Consensus       199 ~~~lGlGDIviPGl~ia~~~rf-D~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPALL  277 (316)
                      ..-||+||-|+=+++++-+..+ |                       ..-..++.+|-.+||.+|++.+.++|++-|||-
T Consensus       325 ~~klGlGDFiFYs~Lvg~aa~~~~-----------------------~~~~~~~~~ail~Gl~~Tl~~l~~~~~alPALP  381 (403)
T PF01080_consen  325 GIKLGLGDFIFYSVLVGRAAMYGD-----------------------WNTVVACFVAILIGLCLTLLLLAIFRKALPALP  381 (403)
T ss_dssp             --SS-TTTHHHHHHHHHHHHHH-T-----------------------TTTHHHHHHHHHHHHHHHHHHHHHHT-S-SSSS
T ss_pred             ceeecchhHHHHHHHHhHHHhcCC-----------------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            4458999999888777755443 1                       123568899999999999999999999999997


Q ss_pred             hhhhhhhHHHH
Q psy13063        278 YLVPFTLLPLL  288 (316)
Q Consensus       278 YLVP~~L~~~~  288 (316)
                        ++..++.+.
T Consensus       382 --isi~~g~~~  390 (403)
T PF01080_consen  382 --ISIALGLIF  390 (403)
T ss_dssp             --S----HHHH
T ss_pred             --HHHHHHHHH
Confidence              455555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.05  E-value=3.4  Score=39.24  Aligned_cols=35  Identities=37%  Similarity=0.510  Sum_probs=25.6

Q ss_pred             cccccccCCCcccccceeeeeehhhhhhhhhhhhcCCCCcccc
Q psy13063        168 HFSMLRGLGDIVMPGLLLCFVLRYDAYKKSQLLHLGLGDIVMP  210 (316)
Q Consensus       168 ~~SmL~glGDiv~Pg~l~~~~lr~d~~~~~~~~~lGlGDIviP  210 (316)
                      +-=|. |+||+|||.+++.-+.=|..+.       +++=+++|
T Consensus       198 na~mi-G~GDavmPsIlVvSaa~f~~s~-------~l~f~~Lp  232 (277)
T COG3389         198 NAYMI-GLGDAVMPSILVVSAAFFLISP-------ILAFIVLP  232 (277)
T ss_pred             ceEEE-eechhhcccceeeehHHhccCC-------chhhhhHH
Confidence            33455 9999999999998766665544       56667777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.92
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	94.48

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.92  E-value=7.5e-27  Score=219.04  Aligned_cols=189  Identities=19%  Similarity=0.258  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHhccc--CchHHHHHHHHHHHHHhhhheeecccccccceeEEeec
Q psy13063         49 LFSFSLSLFIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRL--PSLKVSTLLLTGLLIYDVFWVFFSSYIFSTNVMVKVAT  126 (316)
Q Consensus        49 ~~~~~~s~~~~~~w~~~~~W~l~Nilgi~~~i~~i~~i~l--~s~k~~tiLL~gLf~YDIF~VF~sp~~f~tsVMvtVAt  126 (316)
                      .+++..|+++...++.+++|+..|+.|+++|.+....+.+  ..+ .+.+||++|.+||++|||      +|++|+++|+
T Consensus       105 ~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy------~TkHMvtLAe  177 (301)
T 4hyg_A          105 AGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVY------RTKHMITLAE  177 (301)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHH------HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhcc------CchHHHHHHH
Confidence            3555667778888888999999999999999998776655  666 899999999999999999      5789999999


Q ss_pred             CCCCCCccchhhcccCCCcccCCCCCCCCceeeccCCCCCCcccccccCCCcccccceeeeeehhhh--hhhhhhhhcCC
Q psy13063        127 RPAENPVGLVAKRFHMGGVARDAPKLSLPGKLVFPSLHQTGHFSMLRGLGDIVMPGLLLCFVLRYDA--YKKSQLLHLGL  204 (316)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pikl~~P~~~~~~~~SmL~glGDiv~Pg~l~~~~lr~d~--~~~~~~~~lGl  204 (316)
                      +..                     ++++|+++++|+.   .+||+++.               ..+.  .++++..++|+
T Consensus       178 gvm---------------------dlk~PilfViP~~---~~ys~~~~---------------~~~~~~~~er~a~~iGl  218 (301)
T 4hyg_A          178 GVL---------------------ETKAPIMVVVPKR---ADYSFRKE---------------GLNISEGEERGAFVMGM  218 (301)
T ss_dssp             TC-----------------------------------------------------------------------CHHHHHH
T ss_pred             hhh---------------------ccCCceEEEEecC---CCcccccc---------------ccccccccccceeEecC
Confidence            743                     3688999999973   46787621               1222  34788899999


Q ss_pred             CCccccceeeeeeehhhhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccchhhhhhhhh
Q psy13063        205 GDIVMPGLLLCFVLRYDAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPALLYLVPFTL  284 (316)
Q Consensus       205 GDIviPGl~ia~~~rfD~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPALLYLVP~~L  284 (316)
                      ||+++|+++++.+.+||......       +      +-..+ +..+++||.+||.+.+.... .+++||.|.||+++++
T Consensus       219 GD~viP~ilVvSa~~F~~~~~~~-------g------~~~lP-algA~~Gt~~Gl~vLl~~V~-~grpqaGLP~LN~GaI  283 (301)
T 4hyg_A          219 GDLIMPSILVVSSHVFVDAPAVL-------W------TLSAP-TLGAMVGSLVGLAVLLYFVN-KGNPQAGLPPLNGGAI  283 (301)
T ss_dssp             HHHHHHHHHHHHHHCC----------------------CCCS-CHHHHHHHHHHHHHHHHHHT-SSSCCCSHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHccccccc-------c------cccch-HHHHHHHHHHHHHHHHHHHH-cCCCCCCCCccchHHH
Confidence            99999999999999998642210       0      00123 78899999999998876322 7999999999999999


Q ss_pred             HHHHHHHHHHhHHH
Q psy13063        285 LPLLTMAYLKGDLR  298 (316)
Q Consensus       285 ~~~~~~A~~RgEl~  298 (316)
                      ++.++.++.+||+.
T Consensus       284 ~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          284 LGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHHTTSCC----
T ss_pred             HHHHHHHHHhceec
Confidence            99999999999986

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=94.48  E-value=0.013  Score=51.45  Aligned_cols=66  Identities=26%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             hhhcCCCCccccceeeeeee--hh-hhhhhhhcccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCcCccc
Q psy13063        199 LLHLGLGDIVMPGLLLCFVL--RY-DAYKKSQLLHLGETGIPAPRHLSRISYFHCSLIGYFLGLLTATVSSEIFKAAQPA  275 (316)
Q Consensus       199 ~~~lGlGDIviPGl~ia~~~--rf-D~~~~~~~~~~~~~~~~~~~~~~r~~YF~~sligY~~GL~~t~~a~~~~~~gQPA  275 (316)
                      -.-|||||-|+=+++++-+.  ++ |-                       .=..+|++|..+||.+|++.+.+++++-||
T Consensus        87 gikLGLGDFIFYSvLVgkAa~~~~~d~-----------------------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPA  143 (176)
T 2kr6_A           87 GVKLGLGDFIFYSVLVGKASATASGDW-----------------------NTTIACFVAILIGLCLTLLLLAIFKKALPA  143 (176)
T ss_dssp             CCSSCTTTHHHHHHHHHHHHHHSCCTT-----------------------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSS
T ss_pred             cccccccCeeehHHHHHHHHHhhccCH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence            34579999998887777554  21 21                       125788999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHH
Q psy13063        276 LLYLVPFTLLPLLT  289 (316)
Q Consensus       276 LLYLVP~~L~~~~~  289 (316)
                      |-  +|..++.+..
T Consensus       144 LP--iSI~lG~~fy  155 (176)
T 2kr6_A          144 LP--ISITFGLVFY  155 (176)
T ss_dssp             SS--SCCCCHHHHH
T ss_pred             Cc--HHHHHHHHHH
Confidence            97  4556655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00